Metagenome / Metatranscriptome Family F060468

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060468
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	64 residues
Representative Sequence	MPRLLADDPNHWRQRGEEMRTLGEAMKERATKAIMLRIAADYDKLAERAEIRTGNRTR
Number of Associated Samples	53
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	39.10 %
% of genes near scaffold ends (potentially truncated)	26.32 %
% of genes from short scaffolds (< 2000 bps)	86.47 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (55.639 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (39.098 % of family members)
Environment Ontology (ENVO)	Unclassified (68.421 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (89.474 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.84% β-sheet: 0.00% Coil/Unstructured: 51.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d6txia_	6txi	0.86301
a.25.1.1: Ferritin	d4iwka_	4iwk	0.85809
a.25.1.1: Ferritin	d3bvfa1	3bvf	0.85798
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.85739
a.25.1.0: automated matches	d6sooa_	6soo	0.84703

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF08042	PqqA	9.02
PF13545	HTH_Crp_2	7.52
PF13202	EF-hand_5	4.51
PF04392	ABC_sub_bind	1.50
PF01436	NHL	1.50
PF13505	OMP_b-brl	1.50
PF00072	Response_reg	0.75
PF13191	AAA_16	0.75
PF00196	GerE	0.75
PF01979	Amidohydro_1	0.75
PF04138	GtrA	0.75
PF07681	DoxX	0.75
PF13899	Thioredoxin_7	0.75
PF10282	Lactonase	0.75
PF02082	Rrf2	0.75
PF02738	MoCoBD_1	0.75
PF08734	GYD	0.75
PF01068	DNA_ligase_A_M	0.75
PF09856	ScfRs	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.50
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.75
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.75
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.75
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.75
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.75
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.75
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.75
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.75
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.75
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.75
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.75
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.75
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.64 %
Unclassified	root	N/A	44.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.64 %
Unclassified	root	N/A	44.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.64 %
Unclassified	root	N/A	44.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.13 %
Unclassified	root	N/A	44.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.11 %
Unclassified	root	N/A	44.36 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.31 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.26 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.03 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.36 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.26 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.50 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.50 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.75 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459015\|G14TP7Y01B8C6L	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	561	Open in IMG/M
3300003505\|JGIcombinedJ51221_10248937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	722	Open in IMG/M
3300003505\|JGIcombinedJ51221_10324692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300004633\|Ga0066395_10219336	Not Available	1005	Open in IMG/M
3300005167\|Ga0066672_10271962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1095	Open in IMG/M
3300005179\|Ga0066684_10316995	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300005332\|Ga0066388_100047895	All Organisms → cellular organisms → Bacteria → Proteobacteria	4341	Open in IMG/M
3300005332\|Ga0066388_100136650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3007	Open in IMG/M
3300005332\|Ga0066388_100252134	All Organisms → cellular organisms → Bacteria	2404	Open in IMG/M
3300005332\|Ga0066388_100354953	Not Available	2113	Open in IMG/M
3300005332\|Ga0066388_100825182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1516	Open in IMG/M
3300005332\|Ga0066388_101496060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M
3300005332\|Ga0066388_101678579	Not Available	1123	Open in IMG/M
3300005332\|Ga0066388_102010289	All Organisms → cellular organisms → Bacteria → Proteobacteria	1036	Open in IMG/M
3300005332\|Ga0066388_102067935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1023	Open in IMG/M
3300005332\|Ga0066388_102842998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	884	Open in IMG/M
3300005332\|Ga0066388_102933487	Not Available	872	Open in IMG/M
3300005332\|Ga0066388_103042507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300005332\|Ga0066388_104824251	Not Available	686	Open in IMG/M
3300005332\|Ga0066388_105244857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300005332\|Ga0066388_105356597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	650	Open in IMG/M
3300005332\|Ga0066388_107308637	Not Available	555	Open in IMG/M
3300005332\|Ga0066388_107317991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	554	Open in IMG/M
3300005363\|Ga0008090_14370693	Not Available	727	Open in IMG/M
3300005436\|Ga0070713_101323534	Not Available	698	Open in IMG/M
3300005560\|Ga0066670_10103817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1596	Open in IMG/M
3300005561\|Ga0066699_11155975	Not Available	532	Open in IMG/M
3300005713\|Ga0066905_101593993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	597	Open in IMG/M
3300005764\|Ga0066903_100012475	All Organisms → cellular organisms → Bacteria → Proteobacteria	8337	Open in IMG/M
3300005764\|Ga0066903_100056340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4857	Open in IMG/M
3300005764\|Ga0066903_101036285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1504	Open in IMG/M
3300005764\|Ga0066903_101516996	Not Available	1266	Open in IMG/M
3300005764\|Ga0066903_101694188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1203	Open in IMG/M
3300005764\|Ga0066903_101765796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300005764\|Ga0066903_102014503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1109	Open in IMG/M
3300005764\|Ga0066903_102987519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	916	Open in IMG/M
3300005764\|Ga0066903_104015011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300005764\|Ga0066903_106036397	Not Available	634	Open in IMG/M
3300005764\|Ga0066903_106121584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	629	Open in IMG/M
3300005764\|Ga0066903_108500999	Not Available	523	Open in IMG/M
3300005764\|Ga0066903_108652984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	518	Open in IMG/M
3300006028\|Ga0070717_10413398	Not Available	1213	Open in IMG/M
3300006041\|Ga0075023_100184563	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300006041\|Ga0075023_100246662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	712	Open in IMG/M
3300006102\|Ga0075015_100075734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1648	Open in IMG/M
3300009090\|Ga0099827_11197190	Not Available	660	Open in IMG/M
3300009792\|Ga0126374_10209677	Not Available	1240	Open in IMG/M
3300009792\|Ga0126374_10332444	Not Available	1034	Open in IMG/M
3300009792\|Ga0126374_11416751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300010046\|Ga0126384_10269048	Not Available	1386	Open in IMG/M
3300010046\|Ga0126384_11397213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300010048\|Ga0126373_10098009	Not Available	2706	Open in IMG/M
3300010048\|Ga0126373_10189645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1984	Open in IMG/M
3300010048\|Ga0126373_10703568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300010048\|Ga0126373_11577617	Not Available	721	Open in IMG/M
3300010048\|Ga0126373_12763946	Not Available	548	Open in IMG/M
3300010048\|Ga0126373_13155644	Not Available	513	Open in IMG/M
3300010358\|Ga0126370_10077013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2227	Open in IMG/M
3300010358\|Ga0126370_12024200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300010360\|Ga0126372_10590420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1063	Open in IMG/M
3300010361\|Ga0126378_10090417	Not Available	2993	Open in IMG/M
3300010361\|Ga0126378_10857058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1016	Open in IMG/M
3300010361\|Ga0126378_10926782	Not Available	977	Open in IMG/M
3300010361\|Ga0126378_11831384	Not Available	690	Open in IMG/M
3300010361\|Ga0126378_11973980	Not Available	665	Open in IMG/M
3300010361\|Ga0126378_12529055	Not Available	586	Open in IMG/M
3300010361\|Ga0126378_12656461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	572	Open in IMG/M
3300010361\|Ga0126378_12981349	Not Available	540	Open in IMG/M
3300010362\|Ga0126377_11590288	Not Available	728	Open in IMG/M
3300010366\|Ga0126379_12728735	Not Available	590	Open in IMG/M
3300010376\|Ga0126381_100081122	Not Available	4081	Open in IMG/M
3300010376\|Ga0126381_100204328	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300010376\|Ga0126381_100414291	Not Available	1880	Open in IMG/M
3300010376\|Ga0126381_100826910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1331	Open in IMG/M
3300010376\|Ga0126381_101020412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1194	Open in IMG/M
3300010376\|Ga0126381_101046677	Not Available	1178	Open in IMG/M
3300010376\|Ga0126381_101757734	Not Available	895	Open in IMG/M
3300010376\|Ga0126381_104415175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	544	Open in IMG/M
3300010398\|Ga0126383_10001748	All Organisms → cellular organisms → Bacteria	13642	Open in IMG/M
3300010398\|Ga0126383_13247742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300010868\|Ga0124844_1116252	Not Available	1020	Open in IMG/M
3300010868\|Ga0124844_1195147	Not Available	743	Open in IMG/M
3300010868\|Ga0124844_1299228	Not Available	544	Open in IMG/M
3300012209\|Ga0137379_10237971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1734	Open in IMG/M
3300012357\|Ga0137384_10235706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1528	Open in IMG/M
3300012948\|Ga0126375_10415742	Not Available	977	Open in IMG/M
3300012971\|Ga0126369_10143769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2233	Open in IMG/M
3300012971\|Ga0126369_10490616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1284	Open in IMG/M
3300012971\|Ga0126369_11195585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	850	Open in IMG/M
3300012971\|Ga0126369_11579004	Not Available	746	Open in IMG/M
3300012971\|Ga0126369_12018458	Not Available	665	Open in IMG/M
3300012971\|Ga0126369_12394075	Not Available	614	Open in IMG/M
3300016319\|Ga0182033_10423937	Not Available	1129	Open in IMG/M
3300016319\|Ga0182033_10624229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300016341\|Ga0182035_10185948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1631	Open in IMG/M
3300016341\|Ga0182035_12162713	Not Available	505	Open in IMG/M
3300016404\|Ga0182037_11549186	Not Available	589	Open in IMG/M
3300016445\|Ga0182038_10864398	Not Available	795	Open in IMG/M
3300017970\|Ga0187783_10023806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4534	Open in IMG/M
3300017970\|Ga0187783_10437156	Not Available	950	Open in IMG/M
3300018058\|Ga0187766_10584208	Not Available	761	Open in IMG/M
3300020580\|Ga0210403_10073267	All Organisms → cellular organisms → Bacteria → Proteobacteria	2753	Open in IMG/M
3300020580\|Ga0210403_10493441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	995	Open in IMG/M
3300020583\|Ga0210401_10584882	Not Available	978	Open in IMG/M
3300021560\|Ga0126371_10030965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5011	Open in IMG/M
3300021560\|Ga0126371_10143037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2446	Open in IMG/M
3300021560\|Ga0126371_10836989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1066	Open in IMG/M
3300021560\|Ga0126371_10897088	Not Available	1030	Open in IMG/M
3300021560\|Ga0126371_10993696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	981	Open in IMG/M
3300021560\|Ga0126371_11136461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	919	Open in IMG/M
3300021560\|Ga0126371_11150251	Not Available	914	Open in IMG/M
3300021560\|Ga0126371_12226230	Not Available	662	Open in IMG/M
3300021560\|Ga0126371_12255633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300021560\|Ga0126371_12584605	Not Available	615	Open in IMG/M
3300021560\|Ga0126371_13733724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	513	Open in IMG/M
3300027645\|Ga0209117_1018691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2257	Open in IMG/M
3300027645\|Ga0209117_1024029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1946	Open in IMG/M
3300027874\|Ga0209465_10129489	Not Available	1247	Open in IMG/M
3300027910\|Ga0209583_10310487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	719	Open in IMG/M
3300031231\|Ga0170824_120721288	Not Available	777	Open in IMG/M
3300031546\|Ga0318538_10390237	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300031573\|Ga0310915_10983213	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300031879\|Ga0306919_11275819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300031941\|Ga0310912_11077196	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300031954\|Ga0306926_10643446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1291	Open in IMG/M
3300031954\|Ga0306926_10818364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1121	Open in IMG/M
3300031954\|Ga0306926_11499348	Not Available	778	Open in IMG/M
3300031954\|Ga0306926_11873709	Not Available	678	Open in IMG/M
3300032001\|Ga0306922_12328233	Not Available	513	Open in IMG/M
3300032076\|Ga0306924_12542552	Not Available	512	Open in IMG/M
3300032261\|Ga0306920_103999417	Not Available	535	Open in IMG/M
3300032261\|Ga0306920_104368919	Not Available	507	Open in IMG/M
3300033289\|Ga0310914_10972558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.25%
Engineered	Engineered	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.24%
Aquatic	Environmental → Aquatic	3.01%
Solid Waste	Engineered → Solid Waste	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.24%
Sediment	Environmental → Aquatic → Sediment	3.01%
Grass	Engineered → Solid Waste → Grass	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.41%
Loam	Environmental → Terrestrial → Soil → Loam	31.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.26%
Composting	Engineered → Solid Waste → Grass → Composting	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.01%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.50%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.75%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	39.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	27.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.75%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.75%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4PV_00429550	2170459015	Switchgrass, Maize And Mischanthus Litter	TPCLLVDDPDHWRQRGEEMRKLADSMKHRATKAIMLRIAHDYDRLAAQTEVRTGKKTTKG
JGIcombinedJ51221_102489371	3300003505	Forest Soil	MSDNNPPPVLADDLNHWRQRGEEMRALADTMKDRATKAIMLRIAHDYDRLADRAEVRTGKKATKE*
JGIcombinedJ51221_103246921	3300003505	Forest Soil	MPYSKTPPMPGLLADDPDHWRQRGEEMRTLADSTKDRLTKAIMLRIAHDYDRLAARAEVRIKK*
Ga0066395_102193361	3300004633	Tropical Forest Soil	KLEMLCRRGMASGANDPPPPMPRLLVDDPNHWRQREEMRALAGTIKERATKAIMLRIANDYDRLARHADARTDNRTST*
Ga0066672_102719621	3300005167	Soil	MSDNNPSPVLAADPNHWRHRAEELPAPADPMQDRAIKAIMLRIAHDYDRLADRAEVRTGKKAIKE*
Ga0066684_103169952	3300005179	Soil	MSDNNPPAMPRFLADDADHWRQRGEEMRTLADSMKDRATKAIMLRIADDYDKLAERAEVQTGKETAKE*
Ga0066388_1000478959	3300005332	Tropical Forest Soil	MSDTTPMPRFLADDPDHWRHRGEEMRAIAGTMKEQATKAIMLRIADDYDKLARRAEIRIGNKTTSNE*
Ga0066388_1001366501	3300005332	Tropical Forest Soil	PPPMPRLLVDDPNHWRQRGEEMRALAGTIKERATKAIMIRIANDYDRLTRHADARTGNITNK*
Ga0066388_1002521343	3300005332	Tropical Forest Soil	MPLILADDPNHWRDSGEEMRSLAAAMRDPATKAIMCRIADDYEKLANRAEQHAAKPL*
Ga0066388_1003549535	3300005332	Tropical Forest Soil	MPNNKPPPPMPHLLADDPNHWRQRGEEMRTLGEAMKERATKAIMLRIAADYDKLAERAEIRTGNRTR*
Ga0066388_1008251821	3300005332	Tropical Forest Soil	MPIINPSAPPPMPRMLADDPNHWRQRGEEMRTLAGTMKEQATKAIMLRIAADYDRLARHAEARTGNGTTTNK*
Ga0066388_1014960603	3300005332	Tropical Forest Soil	MPDSKPPPMPRVLTDDPNHWRQRGEEIRTIAGTMTEQATKAIMLRIADDYDRLAELAEIRTGNRTNNK*
Ga0066388_1016785791	3300005332	Tropical Forest Soil	MPRSLADDPNHWRQRGEEMRTLAEAMKDRATKAIMFRIAADYDKLAERAEVRTGNKAIRK
Ga0066388_1020102892	3300005332	Tropical Forest Soil	MSDNNPPPVPGLLADDPNHWRQRAEEMRVLADNMKDRATKAIMLRIAHDYERDANRAKVRAGKKRARNKT*
Ga0066388_1020679352	3300005332	Tropical Forest Soil	VLADDPNHWRQRSEEMRTIVETMNERATRVIMLRIADDYDKLAERAEIRTGKRTTTNK*
Ga0066388_1028429982	3300005332	Tropical Forest Soil	MSDNNRPSVPRLLADDPHWRQRAEEMRALADTMKDRATKAIMLRIAHDYDRLADRAEVRTGKKAKKE*
Ga0066388_1029334872	3300005332	Tropical Forest Soil	MSDTNSHPPMPRMLADDPNHWRQRDEEMRTLADGMKDPATKAIMLRIADDYDKLAKRAEQRSR*
Ga0066388_1030425071	3300005332	Tropical Forest Soil	MPRMLADDPNHWRQRGEEMRTLAETMKQRATREIMLRIADDYDKLAERAEIRTGNRTTNK
Ga0066388_1048242512	3300005332	Tropical Forest Soil	MANDPPPPMPRLLADDAHHWRQRGEEMRALAGTMKERATKAIMLPIANDYDRLARHAEARSSSGINSK*
Ga0066388_1052448572	3300005332	Tropical Forest Soil	MLVSNPLPLTSLADDPEHWRRRGEEMRILAGTMKERAIKAIMLRIAHDYDRLARHAEARSGKRTTTK*
Ga0066388_1053565972	3300005332	Tropical Forest Soil	MAITPTTPTPMPRMLADDPNHWRQLAAEMRTLAETMNERATKAIMLRIANDYDRLARRAELRTHNK*
Ga0066388_1073086371	3300005332	Tropical Forest Soil	MANNNPPVPRFLADDPNHWRQRGEEMRTIAETMKERASREIMLRIAGDYDRLAELAEIRTGNRTNN
Ga0066388_1073179911	3300005332	Tropical Forest Soil	RLLADDPNHWRHRGEEMRTLTDGMKDGATKAIIIRIADDYDKLAKRAEVRTGNKAINIAACL*
Ga0008090_143706932	3300005363	Tropical Rainforest Soil	MPRMLADDPDHWRQRGEEMRTLAEIMKERVTRQIMLRIADDYDKLAERAEIRTGNRTTTNK*
Ga0070713_1013235341	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPRCLADDPDHWRARGEEMRAFADNMKDRPTKAIMLRIAHDYDRLATRAEVRVKK*
Ga0066670_101038172	3300005560	Soil	MSDNNPPAMPRFLADDADHWRQRGEEMRTLADSMKDRATKAIMLRIADDYDKLAERAEVRTGKETAKE*
Ga0066699_111559752	3300005561	Soil	MTDTPHRYPRVLADDPNRWRQRGEEMRTLAETMKEPATKAIMLRIADDYDKLAKRAAIRTGKTNNY*
Ga0066905_1015939931	3300005713	Tropical Forest Soil	MPRLLADDPDHWSQRAEEMRTLAHNMKDRTTKAIMLRIAHDYDRLAARAKVRIKK*
Ga0066903_1000124757	3300005764	Tropical Forest Soil	MPDSKPPPMPRILADDPNHWRDRGEEMRSLAAARRDPATKAIMCRIADDYDKLAKRAEQRAAKPL*
Ga0066903_1000563407	3300005764	Tropical Forest Soil	MSENKPPPMPRLLADDPNHWRHRGEEMRTLTDGMKDGATKAIIIRIADDYDKLGKRAEVRTGNKAINIAACL*
Ga0066903_1010362852	3300005764	Tropical Forest Soil	MANKSHPLPRVLADDPDHWRARGEEMRTIAEGMKDRCTKAIMLGIADDYDRLAKRAEIRSGNRTTTNK*
Ga0066903_1015169962	3300005764	Tropical Forest Soil	MPRVLTDDPNHWRQRGREIRTIAGTMTEQATKAIMLRIAADYDKLAKLAELRTSSRTNNK
Ga0066903_1016941882	3300005764	Tropical Forest Soil	MPRLLADDAHHWRQRGEEMRALAGTMKERATKAIMLPIANDYDRLARHAEARSSSGINSK
Ga0066903_1017657963	3300005764	Tropical Forest Soil	VTTPVSNPLSLTSLADDPEHWRQRGEEMRTLAGTMKERAIKAIMLRIAHDYDRLARHAEARTGNRTTTK*
Ga0066903_1020145033	3300005764	Tropical Forest Soil	MANSPRHSPPMPHLLADDPDLWRQRSEEMRTLAETMKERATKAIMLRIANDYDRLARRA
Ga0066903_1029875192	3300005764	Tropical Forest Soil	MPNNKPPPPMPRVLADDPNHWRQRGEEMRVLAETMKEHATKAIMLRIADDYDKLAHRAEVRTGKGPEKQ*
Ga0066903_1040150112	3300005764	Tropical Forest Soil	MPNNNPPPPPRFLADDPNHWRQRGEEMRALAETMKEHATKAIMLRIADDYDKLAERAEVRTGKRT*
Ga0066903_1060363972	3300005764	Tropical Forest Soil	MSDNNPPPVPRLLADDPNHWRQRAVLAGTMKERAAKAIMLRIAHDYDRLARRTEIRAFPVLLHAHE*
Ga0066903_1061215842	3300005764	Tropical Forest Soil	MPRVLADDPNHWRQRGEEMRTLAGTMKEQATKAIMLRIAADYDRLARHAEART
Ga0066903_1085009992	3300005764	Tropical Forest Soil	GTKCLFPDSCPIMTGNRSPAPIAALLGDDPNHWRQRGEEMRTLAGIMKESATRQIMLRIADDYEKLAARAEIRSGNRTTTNK*
Ga0066903_1086529842	3300005764	Tropical Forest Soil	MSDNTSPPMPRLLADDPNHWSQRGEEIRTLAEGMKDHATKAIMLRIADDYDKLAKRAEVRTGNKLIK*
Ga0070717_104133982	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSHNNPPMLADDPNHWRQRGEEMRALADTMKDRASKAIMLRIAHDNDRLADQAEVQTGKSDQGIN*
Ga0075023_1001845632	3300006041	Watersheds	MQCLLADDPDHWRQRAEEMRLLADSMKDRLTKAIMLRIAHDYDRLAERAEVRTGKTMTK*
Ga0075023_1002466622	3300006041	Watersheds	MPGLLADDADHWRQRGEEMRTLADSTKDRPTKAIMLRIAHDYDRLAARAEVRIKK*
Ga0075015_1000757343	3300006102	Watersheds	MPDSKTPPMPGLLADDADHWRQRGEEMRTLADSTKDRPTKAIMLRIAHDYDRLAARAEVRIKK*
Ga0099827_111971902	3300009090	Vadose Zone Soil	MPHLLADDPDHWRAKGEELRTLAEAMKDRATKAIMHRIAHDYDRLAERAEVRIGNRTTEKFSRPRP
Ga0126374_102096772	3300009792	Tropical Forest Soil	MPDSKPPPMPRILADDPNHWRDRGEEMRSLAAARRDPATKAIMCRIADDYDKLANRAEQHAAKPL*
Ga0126374_103324442	3300009792	Tropical Forest Soil	MTGNNSPAPMPRFLADDSNHWRQGGEEMRTLAETMKEQAVKAIMLRIADDYDKLAERAEIRTGNRTSTNK*
Ga0126374_114167512	3300009792	Tropical Forest Soil	MSDTTPMPRFLADDPDHRRHRGEEMRAIAGTMKEQATKAIMLRIADDYDKLARRAEIRIGNKTTSNE*
Ga0126384_102690482	3300010046	Tropical Forest Soil	MPNSKPPPMPLILADDPNHWRDRGEEMRSLAAAMRDPATKAIMCRIADDYEKLANRAEQHAAKPL*
Ga0126384_113972131	3300010046	Tropical Forest Soil	LNLTEPMPRVLADDPDHWRQRGEEMRTLAGIMKERVTRQIMLRIADDYDKLAERAEIRTGNRTTTNK*
Ga0126373_100980096	3300010048	Tropical Forest Soil	MPRVLADDPNYWRQRGEEMRTLAGTMKEQATKAIMLRIADDYDRLARRAEIRTGNTA*
Ga0126373_101896451	3300010048	Tropical Forest Soil	MANSPGHSPPMPHLLADDPDLWRQRSEEMRTLAETMKERATKAIMLRIANDYDRLARRAEIRKPAGDSTDNN*
Ga0126373_107035681	3300010048	Tropical Forest Soil	RLLADDPNHWRQRAEEMRVLADNMKDRATKAIMLRIAHDYERDANRAKVRAGKKRARNKT
Ga0126373_115776172	3300010048	Tropical Forest Soil	MSSNNPPPPPRLLADNPNHWRQRGEEMRVLAETMKEHATKAIMLRIADDYDKLAERAEVRIGKRTTNN*
Ga0126373_127639461	3300010048	Tropical Forest Soil	MPRLLADDPNHWRQRDEEMRTLAEGMKEAATKAIMLRIADDYDKLAKHAEIRAGKK*
Ga0126373_131556441	3300010048	Tropical Forest Soil	MTGNNSPAPMPRFFSNHWRQRGEEMRTLAETMKEQATKAIMLRIADDYDKLAEIRTGNRTPTSK*
Ga0126370_100770134	3300010358	Tropical Forest Soil	MPRVLADDPDHWRQRGEEMRTLAGIMKERVTRQIMLRIADDYDKLAERAEIRTGNRTTTNK*
Ga0126370_120242002	3300010358	Tropical Forest Soil	MPRLLADDPNHWRHRGEEMRTLTDGMKDGATKAIIIRIADDYDKLAKRAEVRTGNKAINIAACL*
Ga0126372_105904202	3300010360	Tropical Forest Soil	MPNNNPPPPPRILADDPNHWRQRGEEMRTLAGTMKEQATKAIMLRIADDYDKLANHAEIRTSNRTPTSK*
Ga0126378_100904174	3300010361	Tropical Forest Soil	MPNSKPPPMPLILADDPNHWRDRGEEMRSLAAAMRDPATKAIMCRIADDYDKLAKRAEQRAAKPL*
Ga0126378_108570582	3300010361	Tropical Forest Soil	MPRLLADDPNHWRHRGEEMRTLTDGMKDGATKAIIIRIADDYDKLAKRAEVRTGNKAINIVACL*
Ga0126378_109267821	3300010361	Tropical Forest Soil	MSENNPPPVLADDPSHWRQRGEEMRALADTMKDRATKAIMLRIAHDYDRRADRAEVRAGKKASKE*
Ga0126378_118313841	3300010361	Tropical Forest Soil	SSNNLPPPPRLLADDPNHWRQRGEEMRALGDTMKEHATKAIMLRIADDYDKLAERAEVRSGKGTAKK*
Ga0126378_119739801	3300010361	Tropical Forest Soil	MANNNPPVPRFLADDPNHRRQRGEEMRTIAETMKERASREIMLRIAGDYDRLAELAEIRT
Ga0126378_125290551	3300010361	Tropical Forest Soil	MPRVLADDPNHWRQRGEEMRTLAGTMKEQATKAIMLRIAADYDRLARHAEARTGNGTTTNK*
Ga0126378_126564612	3300010361	Tropical Forest Soil	LLADDPNHWRERGEEMRALAEVMKDRATKAIMRRIADDYDKLAHRAEVRTGNKAINK*
Ga0126378_129813491	3300010361	Tropical Forest Soil	MPRVLADDPDHWRQRGEEMRTLAGIMKERATKRIADDYDKLAQRAETRTGNRTTTNK*
Ga0126377_115902882	3300010362	Tropical Forest Soil	MPRVLADDPNHWRQRGEEMCTLAGIMKERATKAIMLRIADDYEKLAERAEIRTGNRTTTNK*
Ga0126379_127287351	3300010366	Tropical Forest Soil	MSSNNPPPPPRLLADDPNHWRQRGEEMRVLAETMKEHATKAIMLPIADDYDKLAHRAEVRTGKGPAKQ*
Ga0126381_1000811224	3300010376	Tropical Forest Soil	MPNSKPPPMPLILADDPNHWRDSGEEMRSLAAAMRDPATKAIMCRIADDYEKLANRAEQHAAKPL*
Ga0126381_1002043286	3300010376	Tropical Forest Soil	VLADDPNHWRNRGEEMRTIAETMKERATKAIMLRIADDYDKLAKRAEFRTGKRNNN*
Ga0126381_1004142914	3300010376	Tropical Forest Soil	MPHLLADDPNHWRQRGEEMRTLGEAMKERATKAIMLRIAADYDKLAERAEIRTGNRTR*
Ga0126381_1008269102	3300010376	Tropical Forest Soil	MSSNNPPPPPRLLADDPNHWRQRGEEMRVLAETMKEHATKAIMLRIADDYDKLAERAEVRTGKRTTKS*
Ga0126381_1010204121	3300010376	Tropical Forest Soil	MLASNPLPLTSLADDAEYWRQRGEGMRTLAETMKERAAKAIMLRIAHDYDRLARRTEIRAFPVLLHAHE*
Ga0126381_1010466772	3300010376	Tropical Forest Soil	MPPLLADDPNHWRQRGEEMRTLAEDMKDRATKAIMQRIADDYDKLAHRAEVRTGNKAINK
Ga0126381_1017577343	3300010376	Tropical Forest Soil	ADDPNHWRQRGEEMRTLAEIMKEPATKAIMLRIADDYDKLAKRAEIRTGKRTN*
Ga0126381_1044151751	3300010376	Tropical Forest Soil	MLADDPNHWRQRGEEMRVLAETMKEHATKAIMLRIADDYDKLAHRAEVRTGKGPEKR*
Ga0126383_100017488	3300010398	Tropical Forest Soil	MPNSKPPPMPLILADDPNHWRDRAEEMRSLAAAMRDPATKAIMCRIADDYEKLANRAEQHAAKPL*
Ga0126383_132477422	3300010398	Tropical Forest Soil	MLADDPNHWRQRGEEMRVLAETMKEHATKAIMLRIADDYDKLAHRAEVRTG
Ga0124844_11162521	3300010868	Tropical Forest Soil	NIAVMTNTHSPQGPARVLADDPNHWRQRSEEMRTIVETMNERATRVIMLRIADDYDKLAERAEIRTGKRTTTNK*
Ga0124844_11951471	3300010868	Tropical Forest Soil	IAVMTNTHSPQGPARVLADDPNHWRQRSEEMLRTIVETMNERATRVIMLRIADDYDKLAERAEIRTGKRTTTNK*
Ga0124844_12992282	3300010868	Tropical Forest Soil	IAVMTNTHSPQGPARVLADDPNHWRQRSEEMRTIVETMNERATRVIMLRIADDYDKLAERAEIRTGKRTTTNK*
Ga0137379_102379712	3300012209	Vadose Zone Soil	MPQPSLYDDPNHWRARAEEMRTIADGMKDTRTKAIMLRIADDYDKLAERAEIRIGGKK*
Ga0137384_102357063	3300012357	Vadose Zone Soil	MPQPSLYDDPNHWRARAEEMRTIADGMKDTRTKAIMLRIADDYDKLAERAEIRTGGEK*
Ga0126375_104157422	3300012948	Tropical Forest Soil	MPRSLADDPNHWRARGEEIRTIAEVMEDRATKAIRLRIADDYDKLAERAEIRTGKSTK*
Ga0126369_101437694	3300012971	Tropical Forest Soil	MPRMLADDPDHWRQRGEEMRTLAEIMKERVTRQIMLTIADDYDKLAERAEIRTGNRTTTNK*
Ga0126369_104906163	3300012971	Tropical Forest Soil	MSDNNPPPAPRLLADDPNHWRQRAEEMRVLADNMKDRATKAIMLRIAHDYDRLANRVEVRNGKKATKE*
Ga0126369_111955853	3300012971	Tropical Forest Soil	MPNNNPPPPPRILADDPNHWRQRGEEMRTLAEIMKEPATKAIMLRIADDYDKLAKRAEIRTGKRTN*
Ga0126369_115790041	3300012971	Tropical Forest Soil	ANDPPPPMPRLLVDDPNHWRQREEMRALAGTIKERATKAIMLRIANDYDRLARHADARTDNRTST*
Ga0126369_120184582	3300012971	Tropical Forest Soil	MPHLLADDPDLWRQRSEEMRTLAETMKERATKAIMLRIANDYDRLARRAEIRKPTGDATDNN*
Ga0126369_123940752	3300012971	Tropical Forest Soil	MPRLLADDPNHWRHRGEEMRTLADGMKDGATKAIMLRIADDYDKLAKRAEVRTGNKAINK
Ga0182033_104239373	3300016319	Soil	PRMLADDPNHWRQRAAEMRTLVETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0182033_106242292	3300016319	Soil	MLVSNPLPLTSLTDDPEYWRRRGEEMRTLAETMKERATKSIMLRIAHDYDRLTKRAEILTGNTTNNK
Ga0182035_101859481	3300016341	Soil	MSDNDPPPVLADDPSHWRQRAAEMRALADTVKDRATKAIMLRIAHDYDRLADRAEV
Ga0182035_121627131	3300016341	Soil	MVTKNLSPAPMPRLLADDPNHWRNGVRKCVPLPMKEQATKAIMLRIADDYDKLARRAEIRAGNRTA
Ga0182037_115491861	3300016404	Soil	MQRVLADDPNHWRQRGEEMRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTTNN
Ga0182038_108643981	3300016445	Soil	MPRFLADDSNHWRQRGEEMRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTPTS
Ga0187783_100238062	3300017970	Tropical Peatland	VPLEKPIRALPRILADDPVHWRERGEETRVLAEDMKDPATKAIMFRIAADYDKLAERAEIRTDDGKRPR
Ga0187783_104371562	3300017970	Tropical Peatland	MPRFLADNANHWRERGEEMRVNAEDMKDPKTRAIMLRIVDDYERLAERAEIRRDGGARRR
Ga0187766_105842082	3300018058	Tropical Peatland	MLADDPNHWRQRAAEMRTLADTMHERATKAIMLRIANDFDRLARRAEIRTGDTANNN
Ga0210403_100732671	3300020580	Soil	MSDNNPPPVLADDLNHWRQRGEEMRALADTMKDRATKAIMLRIAHDYDRLADRAEVRTGKKATKE
Ga0210403_104934412	3300020580	Soil	MPYSKTPPMPGLLADDPDHWRQRGEEMRTLADSTKDRLTKAIMLRIAHDYDRLAARAEVRIKK
Ga0210401_105848821	3300020583	Soil	ARVTCFAFLPMPYSKTPPMPGLLADDPDHWRQRGEEMRTLADSTKDRLTKAIMLRIAHDYDRLAARAEVRIKK
Ga0126371_100309652	3300021560	Tropical Forest Soil	MANSPGHSPPMPHLLADDPDLWRQRSEEMRTLAETMKERATKAIMLRIANDYDRLARRAEIRKPSGDATDNN
Ga0126371_101430372	3300021560	Tropical Forest Soil	MSDTTPMPRFLADDPDHWRHRGEEMRAIAGTMKEQATKAIMLRIADDYDKLARRAEIRIGNKTTSNE
Ga0126371_108369892	3300021560	Tropical Forest Soil	MPNNNPPPPPRILADDPNHWRQRGEEMRTLAEIMKEPATKAIMLRIADDYDKLAKRAEIRTGKRTN
Ga0126371_108970881	3300021560	Tropical Forest Soil	MPRLLADDPNHWRQRGEEMRTLGEAMKERATKAIMLRIAADYDKLAERAEIRTGNRTR
Ga0126371_109936962	3300021560	Tropical Forest Soil	MAITPTTPTPMPRMLADDPNHWRQLAAEMRTLAETMNERATKAIMLRIANDYDRLARRAELRTHNK
Ga0126371_111364611	3300021560	Tropical Forest Soil	MSDNTSPPMPRFLADDPNHWRHRGEEMRTLADGMKDSATKAIMLRIADDYDKLAKRAEVRTGNKAINK
Ga0126371_111502512	3300021560	Tropical Forest Soil	MSSNNPPPPPRLLADDPNHWRQRGEEMRVLAETMKEHATKAIMLRIADDYDKLAERAEVRTGKRTTKS
Ga0126371_122262301	3300021560	Tropical Forest Soil	DNNPPPVPRLLADDPNHWRQRAVLAGTMKERAAKAIMLRIAHDYDRLARRTEIRAFPVLLHAHE
Ga0126371_122556332	3300021560	Tropical Forest Soil	VPGLLADDPNHWRQRAEEMRVLADNMKDRATKAIMLRIAHDNERDANRAKVRTGKNRARNKT
Ga0126371_125846052	3300021560	Tropical Forest Soil	MPRVLADDPNHWRQRGEEMRTIAETMNEQATKAIMLRIADDYDKLAKRAEIRAGNNNK
Ga0126371_137337241	3300021560	Tropical Forest Soil	MSENKPPPMPRLLADDPNHWRHRGEEMRTLTDGMKDGATKAIIIRIADDYDKLAKRAEVRTGNKAINIAACL
Ga0209117_10186913	3300027645	Forest Soil	MPDSKTPPMPGLLADDADHWRQRGEEMRTLADSTKDRPTKAIMLRIAHDYGRLAARAEVRIKK
Ga0209117_10240291	3300027645	Forest Soil	MSDNNPPAVPRLLADDPNHWRQRGDEMRALADIVKDRATKAIMLRIAHDYDRLADRAEARTGKKAKKDKN
Ga0209465_101294891	3300027874	Tropical Forest Soil	KLEMLCRRGMASGANDPPPPMPRLLVDDPNHWRQREEMRALAGTIKERATKAIMLRIANDYDRLARHADARTDNRTST
Ga0209583_103104872	3300027910	Watersheds	MPDSKTPPMPGLLADDADHWRQRGEEMRTLADSTKDRPTKAIMLRIAHDYDRLAARAEVRIKK
Ga0170824_1207212882	3300031231	Forest Soil	MTNHHPPHYPRSLVDDPDHWRQRGEEMRTIAEGMNHRATKTIMLQIADDYDKLAAQAEQRTGKSNK
Ga0318538_103902371	3300031546	Soil	PMVTKNLSPAPMPRLLADDPNHWRQRGEEMRTLAEIMKEQATRAIMLRIADDYDELARRAEIRTGDTSN
Ga0310915_109832131	3300031573	Soil	MPRLLADDPNHWRQRGEEMRTLAEIMKEQATRAIMLRIADDYDELARRAEIRTGDTSN
Ga0306919_112758192	3300031879	Soil	MLASNPLPLTSLADDAEYWRQRGEEMRTLAETMKERETKAIMLRIAHDYDRLPRRAEIRTGNTTSNNK
Ga0310912_110771962	3300031941	Soil	PAPMPRILADDPNHWRQRGEEMRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTPTSK
Ga0306926_106434464	3300031954	Soil	MLASNPLPLTSLADDAEYWRQRGEEMRTLAETMKERETKAIMLRIAHDYDRLPRRAEIRTGNTTSNNT
Ga0306926_108183641	3300031954	Soil	RWLADDPNYWRQRAEEMRALADTMKDRATKAIMLRIARDYDRLADRAEALTAKKRKRNKN
Ga0306926_114993482	3300031954	Soil	MNIDVDQGNCAPAMAITPATPTPMPRMLADDPNHWRQRAAEMRTLVETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0306926_118737091	3300031954	Soil	SPAPMPHILADDPNHWRQRGEEMRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTTTHK
Ga0306922_123282332	3300032001	Soil	VDQEYCSSAMAITPATPTPMPRMLADDPNHWRQRAAAETMNERATKAIMLRIANDYDRLARRAEIRTTNK
Ga0306924_125425522	3300032076	Soil	HSPAPMPHILADDPNHWRQRGEEMRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTTTHK
Ga0306920_1039994172	3300032261	Soil	LADDAQYWRQRGEEMRTLAETMKERETKAIMLRIAHDYDRLPRRAEIRTGNTTSNNK
Ga0306920_1043689192	3300032261	Soil	MSCNNRPPVPRLLADAPNHWRQKAEEMRALADTMKDRATKAIMLRIAHDYDRLADRAEVRTGKKAR
Ga0310914_109725582	3300033289	Soil	MLADDPNHWRQRAAAETMNERATKAIMLRIANDYDRLARRAEIRTTNK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060468

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences