NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F060876

Metagenome / Metatranscriptome Family F060876

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F060876
Family Type Metagenome / Metatranscriptome
Number of Sequences 132
Average Sequence Length 69 residues
Representative Sequence EEGQRLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTLEQNHKLLKDGIQILDEIVLKRKSS
Number of Associated Samples 122
Number of Associated Scaffolds 132

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.76 %
% of genes near scaffold ends (potentially truncated) 96.97 %
% of genes from short scaffolds (< 2000 bps) 93.94 %
Associated GOLD sequencing projects 117
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(11.364 % of family members)
Environment Ontology (ENVO) Unclassified
(30.303 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.939 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.32%    β-sheet: 0.00%    Coil/Unstructured: 53.68%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 132 Family Scaffolds
PF00903Glyoxalase 84.85
PF12681Glyoxalase_2 8.33
PF01321Creatinase_N 3.03
PF00106adh_short 0.76
PF00795CN_hydrolase 0.76
PF00557Peptidase_M24 0.76
PF13520AA_permease_2 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 132 Family Scaffolds
COG0006Xaa-Pro aminopeptidaseAmino acid transport and metabolism [E] 3.03

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664021|ICCgaii200_c0670859All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1044Open in IMG/M
3300000893|AP72_2010_repI_A001DRAFT_1084809All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria501Open in IMG/M
3300000956|JGI10216J12902_105528670All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria609Open in IMG/M
3300003997|Ga0055466_10198425All Organisms → cellular organisms → Bacteria → Proteobacteria591Open in IMG/M
3300004019|Ga0055439_10051655All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1118Open in IMG/M
3300004081|Ga0063454_100551706All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria827Open in IMG/M
3300004463|Ga0063356_100383370All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae1797Open in IMG/M
3300004643|Ga0062591_101793273All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria626Open in IMG/M
3300005294|Ga0065705_10678460All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria663Open in IMG/M
3300005295|Ga0065707_10633488All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria672Open in IMG/M
3300005327|Ga0070658_10721533All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300005333|Ga0070677_10682324All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria577Open in IMG/M
3300005336|Ga0070680_101758457All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300005353|Ga0070669_100625508All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria904Open in IMG/M
3300005356|Ga0070674_101785091All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria557Open in IMG/M
3300005457|Ga0070662_101492566All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria583Open in IMG/M
3300005467|Ga0070706_100867780All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria834Open in IMG/M
3300005518|Ga0070699_100281020All Organisms → cellular organisms → Bacteria → Proteobacteria1491Open in IMG/M
3300005544|Ga0070686_100206711All Organisms → cellular organisms → Bacteria → Proteobacteria1411Open in IMG/M
3300005557|Ga0066704_10634028All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria682Open in IMG/M
3300005561|Ga0066699_10503053All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria866Open in IMG/M
3300005713|Ga0066905_101154043All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria690Open in IMG/M
3300005719|Ga0068861_101481457All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300006605|Ga0074057_10911540All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria682Open in IMG/M
3300006755|Ga0079222_10583229All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria848Open in IMG/M
3300006755|Ga0079222_10710063All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300006806|Ga0079220_10056373All Organisms → cellular organisms → Bacteria → Proteobacteria1876Open in IMG/M
3300006852|Ga0075433_10592257All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria974Open in IMG/M
3300006852|Ga0075433_10917036All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300006871|Ga0075434_101485472All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300006903|Ga0075426_10657181All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria785Open in IMG/M
3300006904|Ga0075424_100014200All Organisms → cellular organisms → Bacteria → Proteobacteria8014Open in IMG/M
3300006904|Ga0075424_101278284All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria780Open in IMG/M
3300006904|Ga0075424_102295940All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria567Open in IMG/M
3300007004|Ga0079218_10493566All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1080Open in IMG/M
3300009094|Ga0111539_12966171All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria548Open in IMG/M
3300009100|Ga0075418_10209859All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2073Open in IMG/M
3300009147|Ga0114129_10826906All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1179Open in IMG/M
3300009147|Ga0114129_11331312All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria889Open in IMG/M
3300009156|Ga0111538_11880168All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria753Open in IMG/M
3300009162|Ga0075423_10573735All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1188Open in IMG/M
3300009162|Ga0075423_11350402All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria762Open in IMG/M
3300009179|Ga0115028_10831240All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria723Open in IMG/M
3300009545|Ga0105237_11690349All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria640Open in IMG/M
3300009807|Ga0105061_1033923All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria730Open in IMG/M
3300010029|Ga0105074_1006585All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1764Open in IMG/M
3300010166|Ga0126306_11846197All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria506Open in IMG/M
3300010326|Ga0134065_10256072All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria654Open in IMG/M
3300010358|Ga0126370_10165028All Organisms → cellular organisms → Bacteria1632Open in IMG/M
3300010360|Ga0126372_11111471All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria809Open in IMG/M
3300010361|Ga0126378_11516155All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria760Open in IMG/M
3300010391|Ga0136847_12109140All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria860Open in IMG/M
3300010397|Ga0134124_12295051All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria580Open in IMG/M
3300010400|Ga0134122_10814266All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria893Open in IMG/M
3300011406|Ga0137454_1051187All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria660Open in IMG/M
3300012034|Ga0137453_1094273All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300012038|Ga0137431_1038715All Organisms → cellular organisms → Bacteria1303Open in IMG/M
3300012199|Ga0137383_10339687All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1100Open in IMG/M
3300012199|Ga0137383_11361481All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria503Open in IMG/M
3300012202|Ga0137363_10122393All Organisms → cellular organisms → Bacteria2009Open in IMG/M
3300012208|Ga0137376_10276541All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300012209|Ga0137379_11258828All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria646Open in IMG/M
3300012211|Ga0137377_10254854All Organisms → cellular organisms → Bacteria1685Open in IMG/M
3300012231|Ga0137465_1265903All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300012354|Ga0137366_10746847All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria696Open in IMG/M
3300012357|Ga0137384_11422763All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria542Open in IMG/M
3300012489|Ga0157349_1011026All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria731Open in IMG/M
3300012508|Ga0157315_1047956All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria564Open in IMG/M
3300012509|Ga0157334_1011369All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria848Open in IMG/M
3300012673|Ga0137339_1018610All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300012922|Ga0137394_10058887All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3181Open in IMG/M
3300012929|Ga0137404_12196365All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria516Open in IMG/M
3300012948|Ga0126375_11061416All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria664Open in IMG/M
3300013306|Ga0163162_10987218All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria952Open in IMG/M
3300014150|Ga0134081_10404901All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria513Open in IMG/M
3300014865|Ga0180078_1080962All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria563Open in IMG/M
3300014878|Ga0180065_1119623All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria605Open in IMG/M
3300015245|Ga0137409_11110854All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria630Open in IMG/M
3300015372|Ga0132256_101802754All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria720Open in IMG/M
3300015373|Ga0132257_102288373All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria700Open in IMG/M
3300015373|Ga0132257_103713305All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria555Open in IMG/M
3300016371|Ga0182034_10547691All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria971Open in IMG/M
3300018000|Ga0184604_10039956All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1245Open in IMG/M
3300018056|Ga0184623_10050709All Organisms → cellular organisms → Bacteria1895Open in IMG/M
3300018063|Ga0184637_10306576All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria961Open in IMG/M
3300018064|Ga0187773_10374591All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria817Open in IMG/M
3300018073|Ga0184624_10522114All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria514Open in IMG/M
3300018076|Ga0184609_10018751All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2713Open in IMG/M
3300018077|Ga0184633_10153670All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1193Open in IMG/M
3300018084|Ga0184629_10325599All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria809Open in IMG/M
3300018089|Ga0187774_10349871All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria880Open in IMG/M
3300018469|Ga0190270_12161247All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria616Open in IMG/M
3300019377|Ga0190264_11822279All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria548Open in IMG/M
3300019377|Ga0190264_11832775All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria547Open in IMG/M
3300020197|Ga0194128_10211977All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300021073|Ga0210378_10316158All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria585Open in IMG/M
3300021344|Ga0193719_10376773All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria587Open in IMG/M
3300022208|Ga0224495_10152290All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria987Open in IMG/M
3300025165|Ga0209108_10620171All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria503Open in IMG/M
3300025173|Ga0209824_10089601All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1143Open in IMG/M
3300025271|Ga0207666_1085838All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria509Open in IMG/M
3300025537|Ga0210061_1072090All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria599Open in IMG/M
3300025909|Ga0207705_10439948All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1010Open in IMG/M
3300025910|Ga0207684_10662635All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria889Open in IMG/M
3300025917|Ga0207660_11301024All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria590Open in IMG/M
3300025918|Ga0207662_10232944All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1203Open in IMG/M
3300025936|Ga0207670_10498807All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria988Open in IMG/M
3300025960|Ga0207651_10981240All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria754Open in IMG/M
3300026298|Ga0209236_1090906All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1393Open in IMG/M
3300026326|Ga0209801_1199293All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria804Open in IMG/M
3300026540|Ga0209376_1117342All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1329Open in IMG/M
3300027277|Ga0209846_1027211All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria921Open in IMG/M
3300027787|Ga0209074_10177247All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria786Open in IMG/M
3300027873|Ga0209814_10007018All Organisms → cellular organisms → Bacteria → Proteobacteria4354Open in IMG/M
3300027876|Ga0209974_10444454All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300028828|Ga0307312_10875948All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria595Open in IMG/M
(restricted) 3300031150|Ga0255311_1062683All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria788Open in IMG/M
3300031890|Ga0306925_10685444All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1074Open in IMG/M
3300031908|Ga0310900_10213714All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1364Open in IMG/M
3300031912|Ga0306921_11789271All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria661Open in IMG/M
3300031942|Ga0310916_10562887All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria970Open in IMG/M
3300031962|Ga0307479_10172562All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2125Open in IMG/M
3300032012|Ga0310902_10241989All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1082Open in IMG/M
3300032122|Ga0310895_10091465All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1220Open in IMG/M
3300032174|Ga0307470_11682437All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria534Open in IMG/M
3300032180|Ga0307471_101278772All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria896Open in IMG/M
3300032180|Ga0307471_102064144All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria716Open in IMG/M
3300033412|Ga0310810_10529800All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1160Open in IMG/M
3300033414|Ga0316619_10870686All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria775Open in IMG/M
3300033486|Ga0316624_12181604All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria515Open in IMG/M
3300034115|Ga0364945_0208859All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300034151|Ga0364935_0004259All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3320Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere11.36%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.33%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil5.30%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.55%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.79%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.03%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.03%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.27%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.27%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.27%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.27%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.52%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.52%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.52%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.52%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.52%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.52%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.52%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.52%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.52%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.52%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland0.76%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.76%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.76%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.76%
WastewaterEnvironmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater0.76%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.76%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.76%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.76%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.76%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.76%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.76%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.76%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.76%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.76%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.76%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000893Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003997Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1EnvironmentalOpen in IMG/M
3300004019Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300006605Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009179Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1EnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300010029Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011406Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2EnvironmentalOpen in IMG/M
3300012034Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2EnvironmentalOpen in IMG/M
3300012038Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012231Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2EnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012489Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610EnvironmentalOpen in IMG/M
3300012508Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510Host-AssociatedOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012673Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2EnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014865Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10DEnvironmentalOpen in IMG/M
3300014878Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10DEnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300022208Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300025165Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1EnvironmentalOpen in IMG/M
3300025173Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)EnvironmentalOpen in IMG/M
3300025271Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025537Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027277Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033414Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_BEnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M
3300034151Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_067085912228664021SoilGRVVAHPKVEPIYPRMKELQGFLGTPRVQLNTLEQNHKFYKEGIQILDEIVLKRKPV
AP72_2010_repI_A001DRAFT_108480923300000893Forest SoilEQGQQLIAKEGRVVAHPKVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIILKRKSSSM*
JGI10216J12902_10552867013300000956SoilKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVKILDEIVLKRKSSGH*
Ga0055466_1019842513300003997Natural And Restored WetlandsFYDFLLSEEGQRLIAKEGRVVAHPKVDPIYPRMKELQSLLGTPRVQLNTVEQNHKLYKDGLKILDEIILKRKG*
Ga0055439_1005165513300004019Natural And Restored WetlandsRVVAHPKVEPVYPRMKELQNLLGTPRIQLNTLEQSAKLLKDGVKILDEIVLKRKSSGD*
Ga0063454_10055170623300004081SoilHPYSAGLFYDFLISEQGQRLIATEGRVVAHPKVEPIYARMKELQGLLGTSRIQLNTLEQNHRFYKEGLQILDEIVLKRRAPSTQ*
Ga0063356_10038337033300004463Arabidopsis Thaliana RhizosphereAPHPYSAALFYDFMISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQGFLGTPRVQLNTLEQNQKFYKEGIQILDEIILKRKPASQAG*
Ga0062591_10179327323300004643SoilIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL*
Ga0065705_1067846023300005294Switchgrass RhizosphereFMLSEEGQRLIAKEGRVVGHPSVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKAS*
Ga0065707_1063348823300005295Switchgrass RhizosphereIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSGH*
Ga0070658_1072153323300005327Corn RhizospherePYAAALFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL*
Ga0070677_1068232423300005333Miscanthus RhizosphereQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL*
Ga0070680_10175845713300005336Corn RhizosphereHAAALFYDFLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTMEQNHRLLKDGIQILDEIVLKRKSS*
Ga0070669_10062550813300005353Switchgrass RhizosphereVSHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0070674_10178509113300005356Miscanthus RhizosphereHPYAAALFYDYLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVKILDEIVLKRKSSGH*
Ga0070662_10149256623300005457Corn RhizosphereFYDFMLSEEGQRLIAKEGRVVGHPSVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKAS*
Ga0070706_10086778013300005467Corn, Switchgrass And Miscanthus RhizosphereVAHPKVEPIYPRMKELQNLLGTSRVQLNTVEQNHKFYKDGLQILDEIVLKRK*
Ga0070699_10028102033300005518Corn, Switchgrass And Miscanthus RhizosphereAALFYDFLISEPGQQLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNHKYYKDGLQILDEIVLRRKTS*
Ga0070686_10020671133300005544Switchgrass RhizosphereEEGQRLIAKEGRVVSHPKVEPVYPRMKELQNLLGTPRIQLNTVEQNYRLLKDGIQILDEIILKRKTS*
Ga0066704_1063402823300005557SoilFLISEQGQQLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTVEQNHKYYKEGLQILDEIILKRKPS*
Ga0066699_1050305313300005561SoilVGHPKVEPIYPRMKELQNVLGTPRVQLNTLEQSHKLLKDGLQILDEIILKRKSS*
Ga0066905_10115404313300005713Tropical Forest SoilQLIAKEGRVVAHPKVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDGIILKRKSSSM*
Ga0068861_10148145713300005719Switchgrass RhizosphereFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL*
Ga0074057_1091154013300006605SoilEEGQRLIAKEGRVVSHPKVEPIYPRMRELQSLLGTPRIQLNTLEQNYKLIKDGVQILDEVVLKRKTSSR*
Ga0079222_1058322913300006755Agricultural SoilYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNHRLLKDGLQILDDIILKRKSF*
Ga0079222_1071006323300006755Agricultural SoilYAAALFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL*
Ga0079220_1005637313300006806Agricultural SoilGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0075433_1059225723300006852Populus RhizosphereAKEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNAKLLKDGVKILDEVVLKRKSSGH*
Ga0075433_1091703613300006852Populus RhizosphereALFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL*
Ga0075434_10148547223300006871Populus RhizosphereLFYDFLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQSHKLLKEGIQILDEIVLKRKLS*
Ga0075426_1065718123300006903Populus RhizosphereAPLFYDFLLSEQGQQLIAKEGRVVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIILKRKSASL*
Ga0075424_10001420013300006904Populus RhizosphereYDFMLSEEGQRLIAKEGRVVSHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0075424_10127828423300006904Populus RhizosphereVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKSASL*
Ga0075424_10229594023300006904Populus RhizosphereSEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQSHKLLKEGIQILDEIVLKRKLS*
Ga0079218_1049356623300007004Agricultural SoilAALFYDFMISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQSFLGTPRVQLNTLEQNQKFYKEGLQILDEIVLKRKPV*
Ga0111539_1296617123300009094Populus RhizosphereIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNAKLLKDGVKILDEVVLKRKSSGH*
Ga0075418_1020985913300009100Populus RhizosphereGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQSHKLLKEGIQILDEIVLKRKSS*
Ga0114129_1082690613300009147Populus RhizosphereAKEGRVVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKSASL*
Ga0114129_1133131223300009147Populus RhizosphereIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQSHKLLKEGIQILDEIVLKRKLS*
Ga0111538_1188016813300009156Populus RhizosphereAALFYDYLISEEGQRLIAKEGRVVSHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVKILDEVVLKRKSSGH*
Ga0075423_1057373513300009162Populus RhizosphereQGQQLIANEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNHKYYKEGLQILDAIVLKRKTS*
Ga0075423_1135040213300009162Populus RhizosphereEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNAKLLKDGVKILDEVVLKRKSSGH*
Ga0115028_1083124023300009179WetlandISEEGQRLIAKEGRVVAHPKVEPVYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKPSSH*
Ga0105237_1169034913300009545Corn RhizosphereEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTMEQNHRLLKDGIQILDEIVLKRKSS*
Ga0105061_103392323300009807Groundwater SandMVDVIKSSTDLLPVEGRVVAHPRVDPIYPRMKELQSLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKSASL*
Ga0105074_100658523300010029Groundwater SandMVDVIKPSTDLLPVEGRVVAHPRVDPIYPRMKELQSLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKSASL*
Ga0126306_1184619713300010166Serpentine SoilGRVVVHPKVEPIYPRMKELQNLLGTPRVQINTMEQNAKLIKDGIQILDEVILQRKSSNH*
Ga0134065_1025607213300010326Grasslands SoilIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEIVLKQKSS*
Ga0126370_1016502813300010358Tropical Forest SoilHPYAAALFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0126372_1111147113300010360Tropical Forest SoilLFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0126378_1151615513300010361Tropical Forest SoilSEQGQQLIANEGRVVAHPKVEPIYLRMKELQNLLGTPRVQLNTLEQNHKYYKEGLQILDEIVLKRKTS*
Ga0136847_1210914013300010391Freshwater SedimentKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSSH*
Ga0134124_1229505113300010397Terrestrial SoilDFLISEEGQRLIAKEGRVVTHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNHKLLKDGIQILDEIVLKRKSS*
Ga0134122_1081426623300010400Terrestrial SoilIAKEGRVVAHPKVEPIYPRMKELQGFLGTPRVQLNTLEQNQKFYKEGIQILDEIVLKRKPGQQAG*
Ga0137454_105118723300011406SoilRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQPNTLEQNAKLLKDGVQILDEVVLKRKSSGH*
Ga0137453_109427313300012034SoilEEGQRLIAREGRVVAHPKVEPIYPRMKELQSLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSSL*
Ga0137431_103871513300012038SoilLFYNFLLSESGQQLIAKEGRVVAHPKVEPIYPRMKELQNLLGTARIQLNTLEQNAKLLKDGVQILDEVVLKRKSSGH*
Ga0137383_1033968713300012199Vadose Zone SoilQQLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEIVLKQKSS*
Ga0137383_1136148113300012199Vadose Zone SoilEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTLEQNHKLLKDGIQILDEIVLKRKSS*
Ga0137363_1012239313300012202Vadose Zone SoilYDFLLSEPGQQLIAKEGRVVAHPKVEPIYPRMKELQNLLGTSRVQLNTVEQNHKFYKDGLQILDEIVLKRK*
Ga0137376_1027654113300012208Vadose Zone SoilEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYKLLKDGIQILAEIILKRKSS*
Ga0137379_1125882823300012209Vadose Zone SoilLLSEPGQQLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEIVLKQKSS*
Ga0137377_1025485433300012211Vadose Zone SoilHPYSAALFYDFLLSEQGQQLIAKEGRVVAHPRVDPIYPRMKELQSLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKSASL*
Ga0137465_126590313300012231SoilEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKTSSH
Ga0137366_1074684713300012354Vadose Zone SoilEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEIVLKQKSS*
Ga0137384_1142276313300012357Vadose Zone SoilLFYDFLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQSHKLLKEGIQILDEIVLKRKSS*
Ga0157349_101102613300012489Unplanted SoilIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0157315_104795623300012508Arabidopsis RhizosphereFYDFILSEEGQRLIAKDGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS*
Ga0157334_101136923300012509SoilFYDFLLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNFLGTPRVQLNTLEQNYKLLKDGIQILDEIILKRKSS*
Ga0137339_101861013300012673SoilPPHAHAAALFYDYVISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSSL*
Ga0137394_1005888713300012922Vadose Zone SoilKEGRVVGHPKVEPIYPRMKELQNLLGTSRVQLNTLEQNHKLLKDGIQILDEIILKRKSP*
Ga0137404_1219636513300012929Vadose Zone SoilGQQLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEIVLKQRN*
Ga0126375_1106141613300012948Tropical Forest SoilKEGRVVAHPKVDPIYPRMKELQALLGTSRVQLNTVEQNHKLYKEGLQILDEIVLKRKSSSM*
Ga0163162_1098721813300013306Switchgrass RhizosphereEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNFLGTPRVQLNTLEQNYKLLKDGIQILDEIILKRKSS*
Ga0134081_1040490123300014150Grasslands SoilFLLSEPGQQLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTIEQNHTFYKDGLQILDEIVLKQKSS*
Ga0180078_108096223300014865SoilFYDFMISEEGQRLIAQEGRVVTHPKVEPIYPRMKELQNLLGTPRVQINTMEQNAKLVKDGVQILDEVVLKRKSSGH*
Ga0180065_111962313300014878SoilPHPYAAALFYDYLISEEGQRLIAKEGRVVSHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVKILDEVVLKRKSSGH*
Ga0137409_1111085423300015245Vadose Zone SoilAAALFYDFLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTLEQNHKLLKDGIQILDEIVLKRKSS*
Ga0132256_10180275423300015372Arabidopsis RhizosphereAAALFYDFLISEEGQRLIAKEGRVVTHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNHKLLKDGIQILDEIVLKRKSS*
Ga0132257_10228837313300015373Arabidopsis RhizosphereLLSEEGQRLIAKEGRVVGHSKVEPIYPRMKELQNFLGTPRVQLNTLEQNYKLLKDGIQILDEVILKRKSS*
Ga0132257_10371330523300015373Arabidopsis RhizosphereQRLIAKEGRVVSHPKGEPIYPRMKELQGLLGTPRIQLNTLEQNTKLLKEGVQMLDEIVLKRRAS*
Ga0182034_1054769123300016371SoilFLLSEPGQQLIAKEGRVVAHPKVDPIYPRMKELQNLLGTSRVQLNTVEQNHKFYKDGLQILDEIVLKRK
Ga0184604_1003995613300018000Groundwater SedimentPHPYSAALFYDFLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQSFLGTPRVQLNTLEQNHKFYKEGIQILDEIVLKRKSS
Ga0184623_1005070933300018056Groundwater SedimentYDYLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQSLLGTSRVQLNTIEQNHSLYKDGIQILDEIVLKRRQS
Ga0184637_1030657623300018063Groundwater SedimentAKEGRVVAHPKVEPIYPRMKELQSLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSGY
Ga0187773_1037459113300018064Tropical PeatlandAPHPYSAALFYDFLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTSRVGLNTMEQNHKFLNDGIQILDEIVLKRKSS
Ga0184624_1052211413300018073Groundwater SedimentDFLLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNFLGTPRVQLNTLEQNYKLLKDGIQILDEVILKRKSS
Ga0184609_1001875113300018076Groundwater SedimentIAREGRVVAHPKIEPIYPRMKELQSFLGTPRIQLNSLEQNHKYYKEGIQILDEIVLKRRS
Ga0184633_1015367023300018077Groundwater SedimentAALFYDFLISEEGQRLIAREGRVVAHPKVEPIYPRMKELQGFLGTPRVQLNSLEQNHKYYKEGIQILDEIVLKRRSS
Ga0184629_1032559913300018084Groundwater SedimentQQLIAKEGRVVAHPRVDPIYPRMKGLQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKTTSP
Ga0187774_1034987113300018089Tropical PeatlandGRVVAHPKVEPLYPRMKELQNLLGTSHIQLNTVEQNHKFYKDGIQILDEIILKRK
Ga0190270_1216124713300018469SoilEEGQRLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTMEQNHRLLKDGIQILDEIVLKRKSS
Ga0190264_1182227923300019377SoilHAGALFYDFMISEEGQRLIAQEGRVVVHPKVEPIYPRMKELQNLLGTPRVQINTLEQNAKLIKDGVQILDEVVLKRKSSGH
Ga0190264_1183277523300019377SoilIAKEGRVVAHPKVDPIYPRMKELQSYLGTPRVQLNTVEQNHKLYKDGIQILDEIILKRRP
Ga0194128_1021197713300020197Freshwater LakeEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNAKLLNDGVKILDEIVLKRKSSGH
Ga0210378_1031615823300021073Groundwater SedimentHPYSAALFYDFLISEEGQRLIAREGRVVAHPKIEPIYPRMKELQSFLGTPRIQLNSLEQNHKYYKEGIQILDEIVLKRRSS
Ga0193719_1037677323300021344SoilRLIAKEGRVVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKTTSP
Ga0224495_1015229023300022208SedimentVVAHPKVDPIYPRMKEVQNLLGTPRIQLNSLEQNTKLLKDGVQILDEVVLKRKSSGH
Ga0209108_1062017123300025165SoilLALLDFLLSEQGQQLIAREGRVVAHPKVEPIYPRMKELQSLLGTSRVQLNTIEQNHRLYKDGIQILDEIVLKRRQS
Ga0209824_1008960123300025173WastewaterPYSAALFYDFLLSENGQRMIANEGRLVANPKIEPIYPRMRELRGFLGTPRVHLNTVEDATQYHKEGLQVLDEVVLKRKR
Ga0207666_108583823300025271Corn, Switchgrass And Miscanthus RhizosphereLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL
Ga0210061_107209023300025537Natural And Restored WetlandsLFYDFLLSEEGQRLIAKEGRVVAHPKVDPIYPRMKELQSLLGTPRVQLNTVEQNHKLYKDGLKILDEIILKRKG
Ga0207705_1043994813300025909Corn RhizosphereHPYAAALFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL
Ga0207684_1066263523300025910Corn, Switchgrass And Miscanthus RhizosphereDFLLSEPGQQLIAKEGRVVAHPKVEPIYPRMKELQNLLGTSRVQLNTVEQNHKFYKDGLQILDEIVLKRK
Ga0207660_1130102413300025917Corn RhizosphereVSHPKVEPVYPRMKELQNLLGTPRIQLNTVEQNYRLLKDGIQILDEIILKRKTS
Ga0207662_1023294423300025918Switchgrass RhizosphereDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL
Ga0207670_1049880713300025936Switchgrass RhizosphereEGRVVSHPKVEPIYPRMKELQGLLGTPRIQLNTLEQNTKLLKEGVQMLDEIVLKRRAS
Ga0207651_1098124013300025960Switchgrass RhizosphereVVSHPKVEPVYPRMKELQNLLGTPRIQLNTVEQNYRLLKDGIQILDEIILKRKTS
Ga0209236_109090613300026298Grasslands SoilSEPGQQLIAKEGRVVAHPKVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEVVLKQRN
Ga0209801_119929313300026326SoilLFYDFLLSEPDQQLIAKEGRVVAHPRVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYEDGLQILDEIVLKQKSS
Ga0209376_111734213300026540SoilSEPGQQLIAKEGRVVAHPRVEPIYPRMKELQNFLGTPRVQLNTVEQNHTFYKDGLQILDEIVLKQKSP
Ga0209846_102721113300027277Groundwater SandRVVAHPRVDPIYPRMKELQSLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKSASL
Ga0209074_1017724723300027787Agricultural SoilLFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL
Ga0209814_1000701853300027873Populus RhizosphereAKEGRVVAHPKVEPIYPRMKELQNLLGTPRIQLNTLEQSHKLLKEGIQILDEIVLKRKLS
Ga0209974_1044445423300027876Arabidopsis Thaliana RhizospherePHPYAAALFYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRIQLNTLEQNYRLLKDGIQILDEIILKRKTL
Ga0307312_1087594813300028828SoilLISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQGFLGTPRVQLNTLEQSHKFYKEGIQILDEIVLKRKSS
(restricted) Ga0255311_106268323300031150Sandy SoilALFYDFMISEEGQRLIAKEGRVVAHPKVEPIYPRMKELQGFLGTPRVQLNTLEQNQKFYKEGIQILDEIILKRKPASQAG
Ga0306925_1068544423300031890SoilLFYDFLLSEPGQQLIAKEGRVVAHPKVDPIYPRMKELQNLLGTSRVQLNTVEQNHKFYKDGLQILDEVVLKRK
Ga0310900_1021371433300031908SoilLSEEGQRLIAKEGRVVSHPKVEPVYPRMKELQNLLGTPRIQLNTVEQNYRLLKDGIQILDEIILKRKTS
Ga0306921_1178927113300031912SoilYDFMLSEEGQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDETILKRKTS
Ga0310916_1056288723300031942SoilGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS
Ga0307479_1017256233300031962Hardwood Forest SoilFCDFLLSEQGQQLIAKEGRVVAHPKVEPIYPRMKDLQNLLGTPRVQLNTLEQNHKYYKEGLQILDEIVLKRKTS
Ga0310902_1024198923300032012SoilKEGRVVSHPKVEPIYPRMKELQNLLGTSRIGLNTMEQNSRLLKDGIQILDEIVLRRKSS
Ga0310895_1009146513300032122SoilRVVSHPKVEPVYPRMKELQNLLGTPRIQLNTVEQNYRLLKDGIQILDEIILKRKTS
Ga0307470_1168243723300032174Hardwood Forest SoilRVVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKTTSP
Ga0307471_10127877223300032180Hardwood Forest SoilGQQLIAKEGRVVAHPKVEPIYPRMKELQNLLGTSRVQLNTVEQNHKFYKDGLQILDEIVLKRK
Ga0307471_10206414413300032180Hardwood Forest SoilEQGQQLIAKEGRVVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLQILDEIVLKRKTTSP
Ga0310810_1052980013300033412SoilQRLIAKEGRVVGHPKVEPIYPRMKELQNLLGTPRVQLNTLEQNYRLLKDGIQILDEIILKRKTS
Ga0316619_1087068613300033414SoilYDFLISEEGQRLIAKEGRVVAHPKVEPVYPRMKELQNLLGTPRIQLNTLEQNAKLLKDGVQILDEVVLKRKSSGH
Ga0316624_1218160413300033486SoilSAALFYDFLLSEEGQKLIAKEGRVVAHPKVEPIYPRMKELQNLLGTPRVQLNTVEQNQKLYKDGLQILDEIILKRKG
Ga0364945_0208859_11_2473300034115SedimentLFYDFLLSEQGQQLIAKEGRVVAHPRVDPIYPRMKELQGLLGTSRVQLNTVEQNHKLYKDGLRILDEIVLKRKSSSGL
Ga0364935_0004259_1_1863300034151SedimentQEGRVVTHPKVEPIYPRMKELQNLLGTPRVQINTMEQNAKLVKDGVQILDEVVLKRKSSG

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.