NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F061079

Metagenome / Metatranscriptome Family F061079

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F061079
Family Type Metagenome / Metatranscriptome
Number of Sequences 132
Average Sequence Length 56 residues
Representative Sequence MSEPEARKPVSQGVTRERDKDDVLAAARPLPPDEDVLIDDLTEDEDRLFLAAVLDA
Number of Associated Samples 116
Number of Associated Scaffolds 132

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 86.36 %
% of genes near scaffold ends (potentially truncated) 15.15 %
% of genes from short scaffolds (< 2000 bps) 77.27 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (90.152 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(14.394 % of family members)
Environment Ontology (ENVO) Unclassified
(23.485 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.62%    β-sheet: 0.00%    Coil/Unstructured: 77.38%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 132 Family Scaffolds
PF01850PIN 19.70
PF07929PRiA4_ORF3 9.09
PF00296Bac_luciferase 2.27
PF12728HTH_17 1.52
PF00589Phage_integrase 1.52
PF01914MarC 1.52
PF08044DUF1707 1.52
PF00994MoCF_biosynth 0.76
PF13561adh_short_C2 0.76
PF03551PadR 0.76
PF03703bPH_2 0.76
PF14019DUF4235 0.76
PF00578AhpC-TSA 0.76
PF01636APH 0.76
PF02771Acyl-CoA_dh_N 0.76
PF12910PHD_like 0.76
PF13302Acetyltransf_3 0.76
PF13360PQQ_2 0.76
PF08327AHSA1 0.76
PF00067p450 0.76
PF00248Aldo_ket_red 0.76
PF00313CSD 0.76
PF06559DCD 0.76
PF13683rve_3 0.76
PF09851SHOCT 0.76
PF13399LytR_C 0.76
PF03466LysR_substrate 0.76
PF13185GAF_2 0.76
PF14588YjgF_endoribonc 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 132 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 2.27
COG2095Small neutral amino acid transporter SnatA, MarC familyAmino acid transport and metabolism [E] 1.52
COG0717dCTP deaminaseNucleotide transport and metabolism [F] 0.76
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.76
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.76
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.76
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.76
COG2124Cytochrome P450Defense mechanisms [V] 0.76
COG3402Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domainFunction unknown [S] 0.76
COG3428Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domainFunction unknown [S] 0.76

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms90.15 %
UnclassifiedrootN/A9.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2070309004|prs_FIHLEPW02QY8VRAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia512Open in IMG/M
2189573003|GZIR7W402ITSIDAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia503Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105693902All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1272Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105695639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1913Open in IMG/M
3300000956|JGI10216J12902_112013113All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia689Open in IMG/M
3300001175|JGI12649J13570_1016634Not Available811Open in IMG/M
3300001356|JGI12269J14319_10026108All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia saprophytica4008Open in IMG/M
3300001356|JGI12269J14319_10090663All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1556Open in IMG/M
3300001545|JGI12630J15595_10033245All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300002245|JGIcombinedJ26739_100327132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1415Open in IMG/M
3300003505|JGIcombinedJ51221_10032629All Organisms → cellular organisms → Bacteria1906Open in IMG/M
3300004006|Ga0055453_10132395Not Available755Open in IMG/M
3300004268|Ga0066398_10192578All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria534Open in IMG/M
3300004633|Ga0066395_10898406Not Available536Open in IMG/M
3300005332|Ga0066388_100016127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6233Open in IMG/M
3300005450|Ga0066682_10212204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1242Open in IMG/M
3300005467|Ga0070706_100004752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia13019Open in IMG/M
3300005467|Ga0070706_100329545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1424Open in IMG/M
3300005467|Ga0070706_100805331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria869Open in IMG/M
3300005553|Ga0066695_10842431All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium526Open in IMG/M
3300005610|Ga0070763_10014794All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3314Open in IMG/M
3300005764|Ga0066903_100360106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2360Open in IMG/M
3300005921|Ga0070766_10300143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1031Open in IMG/M
3300005921|Ga0070766_11170654Not Available532Open in IMG/M
3300005994|Ga0066789_10045422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1930Open in IMG/M
3300006028|Ga0070717_10288582All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1456Open in IMG/M
3300006047|Ga0075024_100125565All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1148Open in IMG/M
3300006176|Ga0070765_100839007Not Available869Open in IMG/M
3300006796|Ga0066665_10781192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia754Open in IMG/M
3300006854|Ga0075425_100038591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5326Open in IMG/M
3300006871|Ga0075434_100072080All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3446Open in IMG/M
3300006893|Ga0073928_10690906Not Available712Open in IMG/M
3300006904|Ga0075424_102170764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia585Open in IMG/M
3300009029|Ga0066793_10098629Not Available1691Open in IMG/M
3300009038|Ga0099829_10057610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2903Open in IMG/M
3300009089|Ga0099828_10308945All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1423Open in IMG/M
3300009174|Ga0105241_12572194All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia511Open in IMG/M
3300009400|Ga0116854_1014821All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1278Open in IMG/M
3300009519|Ga0116108_1211291All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia569Open in IMG/M
3300009623|Ga0116133_1019682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1671Open in IMG/M
3300009644|Ga0116121_1226867Not Available596Open in IMG/M
3300009645|Ga0116106_1131471All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia804Open in IMG/M
3300009698|Ga0116216_10089483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1895Open in IMG/M
3300009824|Ga0116219_10604820All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia602Open in IMG/M
3300009839|Ga0116223_10723595All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii571Open in IMG/M
3300010362|Ga0126377_11575142All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia731Open in IMG/M
3300010379|Ga0136449_100938538All Organisms → cellular organisms → Bacteria1403Open in IMG/M
3300010396|Ga0134126_12269545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia592Open in IMG/M
3300010396|Ga0134126_13002681All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia509Open in IMG/M
3300010880|Ga0126350_10408110All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia606Open in IMG/M
3300011269|Ga0137392_10955655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia705Open in IMG/M
3300011270|Ga0137391_10188330All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1797Open in IMG/M
3300012096|Ga0137389_11043583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia700Open in IMG/M
3300012198|Ga0137364_10202860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1454Open in IMG/M
3300012199|Ga0137383_10630801All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia783Open in IMG/M
3300012201|Ga0137365_10153159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1730Open in IMG/M
3300012206|Ga0137380_10045984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4009Open in IMG/M
3300012206|Ga0137380_11067279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia689Open in IMG/M
3300012210|Ga0137378_11474742Not Available592Open in IMG/M
3300012356|Ga0137371_10339294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1168Open in IMG/M
3300012357|Ga0137384_10625656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia877Open in IMG/M
3300012362|Ga0137361_11398887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia623Open in IMG/M
3300012363|Ga0137390_11498340Not Available615Open in IMG/M
3300012917|Ga0137395_10544508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia837Open in IMG/M
3300012929|Ga0137404_10342047All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1307Open in IMG/M
3300012930|Ga0137407_10470003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1172Open in IMG/M
3300012985|Ga0164308_11910250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia553Open in IMG/M
3300014200|Ga0181526_10122572All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1664Open in IMG/M
3300014501|Ga0182024_10771976Not Available1175Open in IMG/M
3300015371|Ga0132258_12386799All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1325Open in IMG/M
3300015372|Ga0132256_102802511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia586Open in IMG/M
3300016319|Ga0182033_10917395All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300016341|Ga0182035_10678991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia896Open in IMG/M
3300017940|Ga0187853_10486879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia539Open in IMG/M
3300017946|Ga0187879_10001827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria14460Open in IMG/M
3300017966|Ga0187776_10003367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8200Open in IMG/M
3300017970|Ga0187783_10025103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4412Open in IMG/M
3300018038|Ga0187855_10017181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4768Open in IMG/M
3300018058|Ga0187766_10189003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1296Open in IMG/M
3300019888|Ga0193751_1078560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1325Open in IMG/M
3300021181|Ga0210388_10071217All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2930Open in IMG/M
3300021402|Ga0210385_10101528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2007Open in IMG/M
3300021402|Ga0210385_10208906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1422Open in IMG/M
3300021474|Ga0210390_11658664All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia502Open in IMG/M
3300021560|Ga0126371_10086620All Organisms → cellular organisms → Bacteria3087Open in IMG/M
3300021560|Ga0126371_10760286All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1116Open in IMG/M
3300025504|Ga0208356_1050551All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300025509|Ga0208848_1082329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia662Open in IMG/M
3300025910|Ga0207684_10004748All Organisms → cellular organisms → Bacteria12737Open in IMG/M
3300025910|Ga0207684_10085159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2692Open in IMG/M
3300025910|Ga0207684_10985117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia706Open in IMG/M
3300025916|Ga0207663_10725489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales788Open in IMG/M
3300026291|Ga0209890_10014071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3207Open in IMG/M
3300026304|Ga0209240_1004927All Organisms → cellular organisms → Bacteria5045Open in IMG/M
3300026304|Ga0209240_1066337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1347Open in IMG/M
3300027080|Ga0208237_1029525All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia828Open in IMG/M
3300027432|Ga0209421_1059107Not Available768Open in IMG/M
3300027505|Ga0209218_1061085All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia768Open in IMG/M
3300027521|Ga0209524_1132603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia517Open in IMG/M
3300027676|Ga0209333_1000577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria20116Open in IMG/M
3300027846|Ga0209180_10026518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3098Open in IMG/M
3300027854|Ga0209517_10237748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1099Open in IMG/M
3300027855|Ga0209693_10047565All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2107Open in IMG/M
3300027889|Ga0209380_10101632Not Available1661Open in IMG/M
3300027905|Ga0209415_10163783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2196Open in IMG/M
3300027915|Ga0209069_10613066All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia628Open in IMG/M
3300028047|Ga0209526_10002454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria12502Open in IMG/M
3300028047|Ga0209526_10117378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1870Open in IMG/M
3300028718|Ga0307307_10074603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1015Open in IMG/M
3300030524|Ga0311357_10526111All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300030991|Ga0073994_12174425All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia567Open in IMG/M
3300031543|Ga0318516_10503730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales695Open in IMG/M
3300031561|Ga0318528_10197367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1076Open in IMG/M
3300031564|Ga0318573_10217135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1016Open in IMG/M
3300031670|Ga0307374_10000165All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria117820Open in IMG/M
3300031770|Ga0318521_10440561All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia779Open in IMG/M
3300031798|Ga0318523_10238819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales908Open in IMG/M
3300031823|Ga0307478_10955921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia716Open in IMG/M
3300031897|Ga0318520_10560890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia708Open in IMG/M
3300032065|Ga0318513_10618044All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium531Open in IMG/M
3300032090|Ga0318518_10542578All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia595Open in IMG/M
3300032090|Ga0318518_10576384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia575Open in IMG/M
3300032160|Ga0311301_10084950All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6424Open in IMG/M
3300032160|Ga0311301_12702692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia546Open in IMG/M
3300032515|Ga0348332_11738694All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia591Open in IMG/M
3300032770|Ga0335085_10879947All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia978Open in IMG/M
3300032783|Ga0335079_10457347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1367Open in IMG/M
3300032783|Ga0335079_10666214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1091Open in IMG/M
3300032893|Ga0335069_10472627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1459Open in IMG/M
3300032895|Ga0335074_10010022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia13243Open in IMG/M
3300032898|Ga0335072_10038391All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6574Open in IMG/M
3300032955|Ga0335076_10027845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5676Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil14.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.61%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil8.33%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.58%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.06%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.55%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.55%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.03%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.03%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.27%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.27%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.27%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.27%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.52%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.52%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.52%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.52%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.52%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.76%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.76%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.76%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.76%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.76%
Green-Waste CompostEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost0.76%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.76%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.76%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.76%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.76%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.76%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.76%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.76%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2070309004Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto RicoEnvironmentalOpen in IMG/M
2189573003Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001175Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004006Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009400Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858EnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025504Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025509Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300027080Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)EnvironmentalOpen in IMG/M
3300027432Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027521Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031670Soil microbial communities from Risofladan, Vaasa, Finland - OX-3EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
prs_016252302070309004Green-Waste CompostMSEPELRKPASEGANLERSREDVLRAARPLPPDDEVLIEDLTEDEDRIFLDAILNA
FE2_041618102189573003Grass SoilMSESEADRSAAKGTTLERDKHDVLGAARPLPPDEDVMIGGITEDEDRLFLAAILDA
INPhiseqgaiiFebDRAFT_10569390233300000364SoilLSEPEAPRPASKGTTLERDRNDVLDAARPLPPDADVLIEDLTEDEDRIFLDAILEA*
INPhiseqgaiiFebDRAFT_10569563923300000364SoilMSEPEVHKSAAKGTTLERDRNHVLGAARPLPPDADVLIGDLTEDEDRLFLAAILEA*
JGI10216J12902_11201311323300000956SoilMSEPEVHRSGSKGATLERGRNDVLDAARPLPPDADVLIEDLTEDEDRLFLAAILEA*
JGI12649J13570_101663413300001175Forest SoilMSEPEAGKPLSQGVARERDKDDVLAAARPLPPDEDVLIDDLTEDEDRPFLAAVLDA*
JGI12269J14319_1002610853300001356Peatlands SoilMSEPEAHKPVSEGVTRERAKGDVLAAAHPLPPDEEVLIDDLTEDEDHLFLAAVLEA*
JGI12269J14319_1009066333300001356Peatlands SoilMSEPEARKLASQGVTRERAKGDVLAAARPLPPDEDVRIDDLTEDEDRLFLAAVLDA*
JGI12630J15595_1003324523300001545Forest SoilMSEPEARKRVSQAVTRERDKDDVLAAARPLXPDEDALIDDLTEDEDRLFLAAVLDA*
JGIcombinedJ26739_10032713223300002245Forest SoilMTEPEARRPDSRGPSRERSRDDVLAAARPLPPDEDVLMDDLTEDEDRLFVAVVLDA*
JGIcombinedJ51221_1003262943300003505Forest SoilRREVRLGVMSQDGKPVSQGVTPERDKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA*
Ga0055453_1013239513300004006Natural And Restored WetlandsMSEPEAHKQPLQGMAHERDKDDVLAAARPLPPDEDALIRGLTEDEDRLFLAAVLDA*
Ga0066398_1019257813300004268Tropical Forest SoilMSEPEVHRSVSKGTTLERDRNDVLGAARPLPPDADVLIDDLTDDEDRLFLAAILEA*
Ga0066395_1089840623300004633Tropical Forest SoilMSEPEVHKSASKGTTLERDRNDVLGAARPLPPDADVLIDDLTEDEDRLFLAAILEA*
Ga0066388_10001612723300005332Tropical Forest SoilMSEPGARQPYAKGTSLERERSEVLDAARPLPPDEDVVIGGLTDEEDHLFLAAILDA*
Ga0066682_1021220423300005450SoilMSEPEVNRSASKGTALERDRNDVLDAARPLPPDADVLIDDLTDDEDRLFLAAILEA*
Ga0070706_100004752143300005467Corn, Switchgrass And Miscanthus RhizosphereMSEPEAHKLVPPGGTRERDKDDVLAAARPLPPDEDVLIDDLSEDEDRLFLAAVLDA*
Ga0070706_10032954533300005467Corn, Switchgrass And Miscanthus RhizosphereMSEPGARKPDAKGTSLERERSEVLDAARPLPPDEDVLIGGLTDEEDHLFLAAILDA*
Ga0070706_10080533123300005467Corn, Switchgrass And Miscanthus RhizosphereMSEPGARKPDAKGTSLERERSDVLDAARPLPPDEDVVIGGLTDEEDHLFLAAILDA*
Ga0066695_1084243113300005553SoilMSEPEVYRSASKGTTLERDRNDVLDAARPLPPDADVLIDDLTEDEDRL
Ga0070763_1001479423300005610SoilMSEQEARMSDPRGLSRERSRDDVLAAAQPLPPDEDVLIDDLTEDEDRLFVAAVLDA*
Ga0066903_10036010633300005764Tropical Forest SoilVSEPEVHRSASKGTTLERDRNDVLDAARPLPPDADVLIEDLTEDEDRLFLAAVLEA*
Ga0070766_1030014323300005921SoilMSEPEARKLASQGVTHERDKDDVLAAARPLPPDEEVLIDGLTEDQDRLFLAAVLEA*
Ga0070766_1117065413300005921SoilRMEVAMSEQEARMSDPRGLSRERSRDDVLAAAQPLPPDEDVLIDDLTEDEDRLFVAAVLDA*
Ga0066789_1004542223300005994SoilMTEPEARRPDSRGPSRDRSRDDVLAAARPLPFDEDVLMDDLTEDEDRLFVAAVLDA*
Ga0070717_1028858233300006028Corn, Switchgrass And Miscanthus RhizosphereMSEPEVHRSASKGTTLERDKNDVLDTARPLPPDADVLIDDLTEDEDRLFLAAILEA*
Ga0075024_10012556523300006047WatershedsMSEPEAHKLVSQVVTRERDKEDVLGAARPLPPDEDVLIDDLTEDEDRLFLAAVLDA*
Ga0070765_10083900713300006176SoilMSEPEARKLASQGVTRERDKDDVLAAARPLPPDEDVLIDGLTEDEDRLFLAAVLEA*
Ga0066665_1078119213300006796SoilMSEPEVHKSAAKSTTLERDRNRVLGAARPLPPDADVLIGDLTEDEDRLFLAAILEA*
Ga0075425_10003859153300006854Populus RhizosphereVLSEPEAPRPASKGTTLERDRNDVLDAARPLPPDADVLIEDLTEDEDRIFLDAILEA*
Ga0075434_10007208063300006871Populus RhizosphereVLSEPEAPRPASKGTTLERDRNGVLDAARPLPPDADVLIEDLTEDEDRIFLDAILEA*
Ga0073928_1069090623300006893Iron-Sulfur Acid SpringMPKRRLRKTSSKGASLERTRQEVLRAARPLPPDHEVLIDDLTDDEDRIFLDIILNA*
Ga0075424_10217076423300006904Populus RhizosphereMSEPEVHRSASKGTTLERGRNDVLDAARPLPPDADALIDNLTVDEDRLFLAAILEA*
Ga0066793_1009862923300009029Prmafrost SoilMSEPEAHKPVSQGVTRERDKDDVLAAARPLPPDEDVLIDDLTEDEDHLFLAAVLDA*
Ga0099829_1005761033300009038Vadose Zone SoilMSESEVRKPDSDRTTRERRKSDVLDAARPLPPDEDALINDLTEDEDRLFLAAVLSA*
Ga0099828_1030894533300009089Vadose Zone SoilMSEPEARKLAAQDVTRERAKDDVLAAARPLPPDEDVLIDDFTEDEDRLFLAAVLEA*
Ga0105241_1257219423300009174Corn RhizosphereMRYAMSEPEVHRSASKGTTLERDRNDVLDAARPLPPDADVLIDDLTEDEDRLFLAAI
Ga0116854_101482113300009400SoilMSEPEARKLASEPVTRERDKDDVLAAARPLPPDEDVLINDLTEDEDRIFLAAVLDA*
Ga0116108_121129123300009519PeatlandMSEPEAHKPVSQRVTRERAKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA*
Ga0116133_101968233300009623PeatlandMTEPEARRPDSRVPSRERSRDDVLAAARPLPPDEDVLMDDLTEDEDRLFVAAVLDA*
Ga0116121_122686723300009644PeatlandMTEPEARRPDSRVPSRERSRDDVLAAARPLPPDEDVLMDDLTEDEDRLFAGAVRDA*
Ga0116106_113147113300009645PeatlandMWRCAMSEPEAHKPVSQRVTRERAKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA*
Ga0116216_1008948343300009698Peatlands SoilMSEPEAHKPVSEGVTRERAKGDVLAAAHPLPPDEEVLIDDLTEDEDRLFLAAVLEA*
Ga0116219_1060482013300009824Peatlands SoilRKLASQGVTRERNKDDVLTAARPLPPDEDVLIDGLTEDEDRLFLAAVLEA*
Ga0116223_1072359523300009839Peatlands SoilMSEPEARKLASQGVTRERNKDDVLTAARPLPPDEDVLIDGLTEDEDRLFLAAVLEA*
Ga0126377_1157514213300010362Tropical Forest SoilSKGTTVERDRNGVLDAARPLPPDANVLIDDLTEDEDRLFLAAILEA*
Ga0136449_10093853823300010379Peatlands SoilMSESEARKLVSQGVTRERDKDDVLTAARPLPPDEDVLIDDLTEDEDQLFFAAVLDA*
Ga0134126_1226954523300010396Terrestrial SoilEPEVHRSASKGTTLERDRNDVLDAARPLPPDADVLIDDLTEDEDRLFLAAILEA*
Ga0134126_1300268113300010396Terrestrial SoilMEVAMSEQEAQRPDPRGSSRERSRDDVLAAAQPLPPDEDVLIDDLTDDEDRLFIAAVLDA
Ga0126350_1040811023300010880Boreal Forest SoilMSEPEARKLASQGVTRERGRDDALAAARPRPPDEDVLIDDLTEDEDRLFIAAVLDA*
Ga0137392_1095565523300011269Vadose Zone SoilMSEPEAHKLVPQGGTRERDKDDVLAAARPLPPDEDVLIDDLTEDEDRHFLAAVLDA*
Ga0137391_1018833033300011270Vadose Zone SoilMSEPEARKLASQGVTRERDKDDVLAAARPLPPDEDVPIDGLTEDEDRLFLAAVLEA*
Ga0137389_1104358313300012096Vadose Zone SoilMSEPEARKLASQGMTRERDKDDVLAAARPLPPDEDVLIDGLTEDEDRLFLAAVLEA*
Ga0137364_1020286023300012198Vadose Zone SoilMSEPEVYRSASKGTTLERDRNDVLDAARPLPPDADVLIDDLTEDEDRLFLTAILEA*
Ga0137383_1063080123300012199Vadose Zone SoilMSEPEVNRSASKGTALERDRNDVLDAARPLPTDADVLIDDLTDDEDRLFLAAILEA*
Ga0137365_1015315933300012201Vadose Zone SoilMSEPEVPRSASKGTTLERDRNDVLDAARSLPPDADVLIDDLTEDEDRIFLAAILEA*
Ga0137380_1004598473300012206Vadose Zone SoilMSEPAGRPAPKGTTLERGKSDVLDAARPLPPDEEVLIDGLTEEEDRLFLAAILSA*
Ga0137380_1106727913300012206Vadose Zone SoilMSEPEVPGSGSQGTTVERDKDDVLDAARPLPPDEDVLMDDLTEDEDRIFLAAILNA*
Ga0137378_1147474213300012210Vadose Zone SoilMSESEVRRPDSRRPDSRRPSRERSKDDVLAAARPLPRDEDVLIGDLTEDEDRLFIAAVLDA*
Ga0137371_1033929423300012356Vadose Zone SoilMLEPEVPRSASKGTTLERDRNDVLDAVRPLPPDADVLIDDLTEDEDRIFLAAILEA*
Ga0137384_1062565613300012357Vadose Zone SoilESRDGGEAMSEPEVRRPDSRRPSRERSKDDVLAAARPLPRDEDVLIGDLTEDEDRLFIAAVLDA*
Ga0137361_1139888713300012362Vadose Zone SoilMSESSARRPDVKGTTLERERNEVLDAARLLPPDEDVLIGEFTDEEDHLFLAAILDA*
Ga0137390_1149834013300012363Vadose Zone SoilMSELEAHRPGGEENPLERGKNDVLDAARPLPPDEDVLIDGLTEDEDRLFLAAIFNA*
Ga0137395_1054450823300012917Vadose Zone SoilMSEPEAHKLPSQQVTRERDKDDVLAAARPLPPDVDVLIDDLTEDEDRLFLAAVLDA*
Ga0137404_1034204723300012929Vadose Zone SoilMEVAMSEQEAGSPDPQGPSRERSRDDVLAAAQPLPPDKDVLIDDLTEDEDRLFLAAVLEA
Ga0137407_1047000313300012930Vadose Zone SoilEPCRYGDPKQRMEVAMSEQEAGSPDPQGPSRERSRDDVLAAAQPLPPDKDVLIDDLTEDEDRLFLAAVLEA*
Ga0164308_1191025013300012985SoilMSEPEVHRSASKGTTLDRDRNDVLDAARPLPPDADVLIDDLTEDEDRLFLAAILEA*
Ga0181526_1012257233300014200BogMTEPEARRADSRGPSRERSRDDVLAAARLLPPDEDVLMDDLTEDEDRLFVAAVLDT*
Ga0182024_1077197613300014501PermafrostMPEPETRKLASQGLSRERGKDDVLAAARPLPPDEDVLIDGLTDDEDRLFIAAVLDA*
Ga0132258_1238679933300015371Arabidopsis RhizosphereMSEPEVHRSASKGTTLERDRNDVLDAARPLPPDADVPIDDLTEDEDRLFLAAILEA*
Ga0132256_10280251123300015372Arabidopsis RhizosphereMSEPEVHRSASKGTTLERDRNDVLDAARPLPPDADVPIDDLTEDEVRLFLAAMLEA*
Ga0182033_1091739523300016319SoilMSESEADRSAAKGTTLERNKNDVLDAARPLPPDEDVMIGGNTEDEDRLFLAAILDA
Ga0182035_1067899113300016341SoilMSESEADRSAAKGTTLERNKNDVLDAARPLPPDEDVMIGGITEDEDRLFLAAILDA
Ga0187853_1048687913300017940PeatlandMSEPEAHKPVSQRVTRERAKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA
Ga0187879_1000182733300017946PeatlandMTEPEARRPDSRVPSRERSRDDVLAAARPLPPDEDVLMDDLTEDEDRLFAGAVRDA
Ga0187776_1000336793300017966Tropical PeatlandMSEPEVHRSASKGTTLERDRNDVLGAARPLRPDADVLIDDLTEDEDRLFLAAIFGA
Ga0187783_1002510363300017970Tropical PeatlandMSEPELRKPASDGASLERSREDVLRAARPLPPDDEVLIEDLTEDEDRIFLDAILNA
Ga0187855_1001718163300018038PeatlandMSEPEAHKPVSQGVTRERAKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA
Ga0187766_1018900323300018058Tropical PeatlandMSEPELRKPASEGANLERSREEVLRAARPLPPDDEVLIEDLTEDEDRIFLDAILNA
Ga0193751_107856023300019888SoilMSEPEAHKLVSQRVTGEREKDDVLAAARPLPPDEDVLIHDLTEDEDRLFLAAVLDA
Ga0210388_1007121733300021181SoilMSQDGKPVSQGVTPERDKDDVLAAARPLPPDEDTLIDDLTEDEDRLFLAAVLDA
Ga0210385_1010152823300021402SoilMSQDGKPVSQGVTPERDKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA
Ga0210385_1020890633300021402SoilMSEPEARKLASQGVTHERDKDDVLAAARPLPPDEEVLIDGLTEDQDRLFLAAVLEA
Ga0210390_1165866423300021474SoilMSEPEARKLASQGVTHERDKDDVLAAARPLPPDEDVLIDGLTEDEDRLFLAAVLEA
Ga0126371_1008662023300021560Tropical Forest SoilMSEPEVHKSASKGTTLERDRNDVLGAARPLPPDADVLIDDLTEDEDRLFLAAILEA
Ga0126371_1076028613300021560Tropical Forest SoilMSESEADRSAAKGTTLERDKNDVLDAARPLPPDEDVMIDGITEDEDRLFFAAILDA
Ga0208356_105055113300025504Arctic Peat SoilMPEPETRKLASQGLSRERGKDDVLAAARPLPPDEDVLIDGLTDDEDRLFIAAVLDA
Ga0208848_108232913300025509Arctic Peat SoilMSEPGAHKQIPPGMTQERDKDDVLAAARPLPPDENALIGDLTEDEDRLFLAAVLDA
Ga0207684_10004748133300025910Corn, Switchgrass And Miscanthus RhizosphereMSEPEAHKLVPPGGTRERDKDDVLAAARPLPPDEDVLIDDLSEDEDRLFLAAVLDA
Ga0207684_1008515933300025910Corn, Switchgrass And Miscanthus RhizosphereMSEPGARKPDAKGTSLERERSDVLDAARPLPPDEDVVIGGLTDEEDHLFLAAILDA
Ga0207684_1098511723300025910Corn, Switchgrass And Miscanthus RhizosphereMSEPGARKPDAKGTSLERERSEVLDAARPLPPDEDVLIGGLTDEEDHLFLAAILDA
Ga0207663_1072548923300025916Corn, Switchgrass And Miscanthus RhizosphereMSEPEVHRSASKGTTLERDKNDVLDTARPLPPDADVLIDDLTEDEDRLFLAAILEA
Ga0209890_1001407153300026291SoilMTEPEARRPDSRGPSRDRSRDDVLAAARPLPFDEDVLMDDLTEDEDRLFVAAVLDA
Ga0209240_100492723300026304Grasslands SoilMSESSARRPDVKGTTLERERNEVLDAARLLPPDEDVLIGELTDEEDHLFLAAILDA
Ga0209240_106633723300026304Grasslands SoilMSEPGARRPDVKGTTLERQRSEVLDAARPLPPDEDVLIGELTDEEDRLFLAAILDA
Ga0208237_102952513300027080Forest SoilQDGKPVSQGVTPERDKDDVLAAARPLPPDEDALIDDLTEDEDRLFLAAVLDA
Ga0209421_105910723300027432Forest SoilMSEPEAGKPLSQGVARERDKDDVLAAARPLPPDEDVLIDDLTEDEDRLFLAAVLDA
Ga0209218_106108523300027505Forest SoilMTEPEARRPDSRGPSRERSRDDVLAAARPLPPDEDVLMDDLTEDEDRLFVAVVLDA
Ga0209524_113260313300027521Forest SoilMSEPEARKRVSQAVTRERDKDDVLAAARPLCPDEDALIDDLTEDEDRLFLAAVLDA
Ga0209333_1000577223300027676Forest SoilMSEPEAGKPLSQGVARERDKDDVLAAARPLPPDEDVLIDDLTEDEDRPFLAAVLDA
Ga0209180_1002651843300027846Vadose Zone SoilMSESEVRKPDSDRTTRERRKSDVLDAARPLPPDEDALINDLTEDEDRLFLAAVLSA
Ga0209517_1023774813300027854Peatlands SoilMSEPEAHKPVSEGVTRERAKGDVLAAAHPLPPDEEVLIDDLTEDEDHLFLAAVLEA
Ga0209693_1004756533300027855SoilMEVAMSEQEARMSDPRGLSRERSRDDVLAAAQPLPPDEDVLIDDLTEDEDRLFVAAVLDA
Ga0209380_1010163213300027889SoilRSRMEVAMSEQEARMSDPRGLSRERSRDDVLAAAQPLPPDEDVLIDDLTEDEDRLFVAAVLDA
Ga0209415_1016378333300027905Peatlands SoilMSEPEARKLASQGVTRERAKGDVLAAARPLPPDEDVRIDDLTEDEDRLFLAAVLDA
Ga0209069_1061306613300027915WatershedsMSEPEAHKLVSQVVTRERDKEDVLGAARPLPPDEDVLIDDLTEDEDRLFLAAVLDA
Ga0209526_1000245453300028047Forest SoilMSEPEARKRVSQAVTRERDKDDVLAAARPLRPDEDALIDDLTEDEDRLFLAAVLDA
Ga0209526_1011737833300028047Forest SoilMSEPEARKPLFQGGTRERDKGDVLSAARPLPPDEYVLINDLTEDEDRLFLAAVLDA
Ga0307307_1007460323300028718SoilMSEPEVPRSASKGTTLERDRNDVLDAARSLPPDADVLIDDLTEDEDRIFLAAILEA
Ga0311357_1052611123300030524PalsaMSEPEARKPVSQGVTRERDKDDVLAAARPLPPDEDVLIDDLTEDEDRLFLAAVLDA
Ga0073994_1217442523300030991SoilEWRCAMSEPEARKLVSPGVTRERDKDDVLAAARPLPPDEDVLIDDLTEDEDRLFLAAVLD
Ga0318516_1050373023300031543SoilMSESEAGRSAAKGTTLERDKNDVLDAARALPPDEDVMIGGITEDEDRLFLAAILDA
Ga0318528_1019736713300031561SoilMSESEADRSAAKGTTLERNKNDVLDAARPLPPDEDVMIGDITEDEDRLFLAAILDA
Ga0318573_1021713523300031564SoilMSESEAGRSAAKGTTLERNKNDVLDAARPLPPDEDVMIGDITEDEDRLFLAAILDA
Ga0307374_10000165613300031670SoilMSEPEARKPLSQGVTRERDKDDVLAAARPLPPDEDVLIDDLTEDEDRLFLAAVLDA
Ga0318521_1044056113300031770SoilAGRSAAKGTTLERDKNDVLDAARALPPDEDVMIGGITEDEDRLFLAAILDA
Ga0318523_1023881923300031798SoilMSESEADRSAAKGTTLERNKNDVLDAARPLPPDEDVMIGDITEDEDRLFL
Ga0307478_1095592123300031823Hardwood Forest SoilMSEQESRRPDPRGPSIERSRDDVLAAAQPLPRDEDVLIDDLTEDEDRLFIAAVLDA
Ga0318520_1056089023300031897SoilSESEADRSAAKGTTLERNKNDVLDAARPLPPDEDVMIGDITEDEDRLFLAAILDA
Ga0318513_1061804413300032065SoilMSELEVHGSASKGTTLERGRSDVLDSARPLPPDGDVVIDDLTEDEDRLFLAAILEARICRRL
Ga0318518_1054257813300032090SoilGCAMSESEAGRSAAKGTTLERDKNDVLDAARALPPDEDVMIGGITEDEDRLFLAAILDA
Ga0318518_1057638423300032090SoilMSESEADRSAAKGTTLERDKNDVLDAARPLPPDEDVMIGDITEDEDRLFFAAILDA
Ga0311301_1008495073300032160Peatlands SoilMSEPEARKLASQGVTRERNKDDVLTAARPLPPDEDVLIDGLTEDEDRLFLAAVLEA
Ga0311301_1270269213300032160Peatlands SoilMTEPEARRPDSRGPSRERSRDDVLSAARPLPPDEDVLMDDLTEDEDRLFVAAVLDA
Ga0348332_1173869413300032515Plant LitterMSEAEVHATGDGHGVTLERDRGDVLDAAKPLPPDEDALIADLTDDEDRLFLAAIFDA
Ga0335085_1087994733300032770SoilMSEPEVHRSAPKGTTLERDRNDVLDAARPLPPDADVLINDLTEDEDRLFQAAIFEA
Ga0335079_1045734733300032783SoilLASEPVTRERDKNDVLAAARPLPPDEDALIDDLTEDEDRIFLAAVLDA
Ga0335079_1066621423300032783SoilMTEPEARRPDPQRPSRERSRDDVLAAARPLPPDEDVRMDDLTEDEDRLFIAAVLDA
Ga0335069_1047262713300032893SoilWDLSAAVGTLRAGWRWAMSEPEARRPDSREPSRERSRDDVLAAARPLPRDKDVRIDDLTEDEDRLFIAAVLDA
Ga0335074_10010022103300032895SoilMRPVGSGGYSRRRMEVAMSEQEARLSDPRGPSRERSRDDVLAAAQPLPPDEDVLIDDLTEDEDRLFVAAVLDA
Ga0335072_1003839183300032898SoilMEVAMSEQEARLSDPRGPSRERSRDDVLAAAQPLPPDEDVLIDDLTEDEDRLFVAAVLDA
Ga0335076_1002784513300032955SoilMAEPDSRKSDSRGPSRERSRDDVLAAGRPLPPDEDVLIDDLTEDEDHLFIKPA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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