NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F062038

Metagenome / Metatranscriptome Family F062038

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F062038
Family Type Metagenome / Metatranscriptome
Number of Sequences 131
Average Sequence Length 48 residues
Representative Sequence MGTDPIIASQSDSHRYEAVLRISEAIAACREPEELARTLADEIGKFL
Number of Associated Samples 91
Number of Associated Scaffolds 131

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 60.47 %
% of genes near scaffold ends (potentially truncated) 96.95 %
% of genes from short scaffolds (< 2000 bps) 85.50 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (93.130 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(36.641 % of family members)
Environment Ontology (ENVO) Unclassified
(42.748 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.725 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.00%    β-sheet: 0.00%    Coil/Unstructured: 52.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 131 Family Scaffolds
PF13505OMP_b-brl 6.87
PF02954HTH_8 3.05
PF00196GerE 2.29
PF01408GFO_IDH_MocA 2.29
PF13561adh_short_C2 1.53
PF13620CarboxypepD_reg 1.53
PF00989PAS 0.76
PF03479PCC 0.76
PF13432TPR_16 0.76
PF00440TetR_N 0.76
PF00578AhpC-TSA 0.76
PF02470MlaD 0.76
PF14659Phage_int_SAM_3 0.76
PF02771Acyl-CoA_dh_N 0.76
PF11737DUF3300 0.76
PF02371Transposase_20 0.76
PF00479G6PD_N 0.76
PF08308PEGA 0.76
PF00150Cellulase 0.76
PF01590GAF 0.76
PF00296Bac_luciferase 0.76
PF02797Chal_sti_synt_C 0.76
PF00069Pkinase 0.76
PF05569Peptidase_M56 0.76
PF03699UPF0182 0.76
PF01425Amidase 0.76
PF00561Abhydrolase_1 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 131 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.05
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.76
COG0364Glucose-6-phosphate 1-dehydrogenaseCarbohydrate transport and metabolism [G] 0.76
COG1615Uncharacterized membrane protein, UPF0182 familyFunction unknown [S] 0.76
COG1661Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domainGeneral function prediction only [R] 0.76
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.76
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.76
COG2730Aryl-phospho-beta-D-glucosidase BglC, GH1 familyCarbohydrate transport and metabolism [G] 0.76
COG3547TransposaseMobilome: prophages, transposons [X] 0.76
COG3934Endo-1,4-beta-mannosidaseCarbohydrate transport and metabolism [G] 0.76

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.13 %
UnclassifiedrootN/A6.87 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002908|JGI25382J43887_10068830All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1913Open in IMG/M
3300005174|Ga0066680_10744151All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300005335|Ga0070666_10758675All Organisms → cellular organisms → Bacteria713Open in IMG/M
3300005437|Ga0070710_10642617All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300005518|Ga0070699_100071170All Organisms → cellular organisms → Bacteria3024Open in IMG/M
3300005541|Ga0070733_10210978All Organisms → cellular organisms → Bacteria1272Open in IMG/M
3300005553|Ga0066695_10889598All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300005602|Ga0070762_10405880All Organisms → cellular organisms → Bacteria879Open in IMG/M
3300005602|Ga0070762_10492155All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300005610|Ga0070763_10677603All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300005921|Ga0070766_10375740All Organisms → cellular organisms → Bacteria → Acidobacteria927Open in IMG/M
3300006102|Ga0075015_101010256All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300006175|Ga0070712_101301120All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium633Open in IMG/M
3300006237|Ga0097621_102219046All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300006854|Ga0075425_102615327Not Available557Open in IMG/M
3300006871|Ga0075434_101745706All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300006903|Ga0075426_10883884All Organisms → cellular organisms → Bacteria → Acidobacteria674Open in IMG/M
3300009012|Ga0066710_104514840All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium520Open in IMG/M
3300009101|Ga0105247_10052535All Organisms → cellular organisms → Bacteria2513Open in IMG/M
3300011271|Ga0137393_11441059All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300012202|Ga0137363_11089943All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium679Open in IMG/M
3300012203|Ga0137399_11144395All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300012205|Ga0137362_10186446All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1784Open in IMG/M
3300012205|Ga0137362_11493696All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300012211|Ga0137377_10916068All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300012285|Ga0137370_10066655All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1965Open in IMG/M
3300012361|Ga0137360_10319426All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1293Open in IMG/M
3300012362|Ga0137361_10349845All Organisms → cellular organisms → Bacteria1356Open in IMG/M
3300012683|Ga0137398_10909573All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium613Open in IMG/M
3300012685|Ga0137397_11362203Not Available501Open in IMG/M
3300012917|Ga0137395_10264856All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300012917|Ga0137395_10678041All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium746Open in IMG/M
3300012923|Ga0137359_10260353All Organisms → cellular organisms → Bacteria1547Open in IMG/M
3300012925|Ga0137419_10003565All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7457Open in IMG/M
3300012925|Ga0137419_11918896All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300012929|Ga0137404_11896527All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium555Open in IMG/M
3300012930|Ga0137407_10338660All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1383Open in IMG/M
3300012986|Ga0164304_11240469All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300013297|Ga0157378_11993927All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium630Open in IMG/M
3300015054|Ga0137420_1464643All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4590Open in IMG/M
3300018044|Ga0187890_10552260All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300020579|Ga0210407_10133235All Organisms → cellular organisms → Bacteria → Acidobacteria1907Open in IMG/M
3300020579|Ga0210407_10237767All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1418Open in IMG/M
3300020579|Ga0210407_10731102All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300020579|Ga0210407_11029770All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300020580|Ga0210403_11239296All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300020581|Ga0210399_10913172All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium711Open in IMG/M
3300020581|Ga0210399_11500684All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300020582|Ga0210395_10143911Not Available1777Open in IMG/M
3300021088|Ga0210404_10568533All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium643Open in IMG/M
3300021168|Ga0210406_10264596All Organisms → cellular organisms → Bacteria1407Open in IMG/M
3300021168|Ga0210406_10921926All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300021170|Ga0210400_10446880All Organisms → cellular organisms → Bacteria1066Open in IMG/M
3300021170|Ga0210400_11221783All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300021171|Ga0210405_10501768All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300021178|Ga0210408_10609268All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300021180|Ga0210396_10006686All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium11021Open in IMG/M
3300021180|Ga0210396_11119989All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300021180|Ga0210396_11276254All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300021180|Ga0210396_11667616All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300021401|Ga0210393_11675785All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300021403|Ga0210397_10477184All Organisms → cellular organisms → Bacteria942Open in IMG/M
3300021403|Ga0210397_10784106All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300021404|Ga0210389_10486146All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300021404|Ga0210389_10842126All Organisms → cellular organisms → Bacteria → Acidobacteria715Open in IMG/M
3300021405|Ga0210387_11314456All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300021405|Ga0210387_11363254All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium611Open in IMG/M
3300021405|Ga0210387_11428429All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300021406|Ga0210386_10563794All Organisms → cellular organisms → Bacteria984Open in IMG/M
3300021407|Ga0210383_11197217All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300021420|Ga0210394_10300653All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1408Open in IMG/M
3300021420|Ga0210394_11478687All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300021420|Ga0210394_11741811All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300021432|Ga0210384_10524435All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1066Open in IMG/M
3300021432|Ga0210384_11684670All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
3300021433|Ga0210391_10334101All Organisms → cellular organisms → Bacteria → Acidobacteria1189Open in IMG/M
3300021433|Ga0210391_10357184All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1146Open in IMG/M
3300021433|Ga0210391_11152225All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300021474|Ga0210390_10531232All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300021474|Ga0210390_10853000All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium752Open in IMG/M
3300021477|Ga0210398_10709492All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium813Open in IMG/M
3300021478|Ga0210402_10295450All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1499Open in IMG/M
3300021479|Ga0210410_10780151All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium840Open in IMG/M
3300021479|Ga0210410_10819528All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium816Open in IMG/M
3300022713|Ga0242677_1082871All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300023046|Ga0233356_1028995All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300024330|Ga0137417_1211022All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium598Open in IMG/M
3300025906|Ga0207699_10559378All Organisms → cellular organisms → Bacteria830Open in IMG/M
3300025922|Ga0207646_10087525All Organisms → cellular organisms → Bacteria → Acidobacteria2787Open in IMG/M
3300025961|Ga0207712_11646736All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300026285|Ga0209438_1174322All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300026296|Ga0209235_1043558All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2214Open in IMG/M
3300026301|Ga0209238_1002379All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7414Open in IMG/M
3300026557|Ga0179587_10437898All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium854Open in IMG/M
3300026999|Ga0207949_1014193All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300027076|Ga0208860_1017016All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300027567|Ga0209115_1093399All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300027676|Ga0209333_1107289All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300027729|Ga0209248_10004507All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 834429Open in IMG/M
3300027842|Ga0209580_10604875All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium543Open in IMG/M
3300027842|Ga0209580_10679570Not Available509Open in IMG/M
3300027855|Ga0209693_10506407All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300027875|Ga0209283_10652933All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium662Open in IMG/M
3300027895|Ga0209624_10863187Not Available592Open in IMG/M
3300027908|Ga0209006_11291637All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300028036|Ga0265355_1018925All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300028536|Ga0137415_10017292All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7150Open in IMG/M
3300029636|Ga0222749_10285547All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300030814|Ga0265741_100028All Organisms → cellular organisms → Bacteria4245Open in IMG/M
3300031708|Ga0310686_106554699All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300031715|Ga0307476_10466214All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium935Open in IMG/M
3300031715|Ga0307476_10871534All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300031715|Ga0307476_10986775All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300031718|Ga0307474_10074628All Organisms → cellular organisms → Bacteria2520Open in IMG/M
3300031718|Ga0307474_10417176All Organisms → cellular organisms → Bacteria → Acidobacteria1046Open in IMG/M
3300031718|Ga0307474_10693594All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300031753|Ga0307477_10058662All Organisms → cellular organisms → Bacteria → Acidobacteria2650Open in IMG/M
3300031754|Ga0307475_10126890All Organisms → cellular organisms → Bacteria2013Open in IMG/M
3300031754|Ga0307475_10143316All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1894Open in IMG/M
3300031754|Ga0307475_10513261Not Available962Open in IMG/M
3300031823|Ga0307478_10026574All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4135Open in IMG/M
3300031823|Ga0307478_10149021Not Available1855Open in IMG/M
3300031823|Ga0307478_10331399All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1251Open in IMG/M
3300031823|Ga0307478_10585679All Organisms → cellular organisms → Bacteria933Open in IMG/M
3300031823|Ga0307478_11508702All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300031962|Ga0307479_10027755All Organisms → cellular organisms → Bacteria5380Open in IMG/M
3300031962|Ga0307479_10050396All Organisms → cellular organisms → Bacteria4001Open in IMG/M
3300031962|Ga0307479_10727540All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis970Open in IMG/M
3300031962|Ga0307479_10966028All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium822Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil36.64%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil17.56%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil14.50%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.58%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.82%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.29%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.29%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.53%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.53%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.76%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.76%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.76%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.76%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.76%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022713Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023046Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MSEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026999Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)EnvironmentalOpen in IMG/M
3300027076Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)EnvironmentalOpen in IMG/M
3300027567Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028036Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030814Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25382J43887_1006883013300002908Grasslands SoilMGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGK
Ga0066680_1074415113300005174SoilMGTELIVESQTGSYRYEAIVRISEAIAACREPEEMAATLASEIG
Ga0070666_1075867513300005335Switchgrass RhizosphereMGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLRFDHLYFV
Ga0070710_1064261713300005437Corn, Switchgrass And Miscanthus RhizosphereMGTDSIIAPRCDASRYEAVVRISEAIAACREPEQLATTLADEIGKFLNFD
Ga0070699_10007117053300005518Corn, Switchgrass And Miscanthus RhizosphereMDTDPIVAPPSDSHRYAAVVRISEAIAACREPEELATTLADEIGKFLNFDH
Ga0070733_1021097813300005541Surface SoilMGTELIIAPQSDSRRYEAVLRISEAIAACREPEELAKTLADQIGKFLHFDHLYFVV
Ga0066695_1088959813300005553SoilMGTEPIVESQTGSYRSEAIVRISETIAACREPEELATTLASEIGKFLRFDHLYFV
Ga0070762_1040588013300005602SoilMGTDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIGK
Ga0070762_1049215523300005602SoilMGTEPIIESQTDSHRYEAIVRISEAIAACREPKELATTLADEIG
Ga0070763_1067760323300005610SoilMISPESDSHRYEAVLRISEAIAACREPEELATTLASEIGKFLHFDHLYFVVLK
Ga0070766_1037574013300005921SoilMGTEPIIESQTDSYRYEALVRISEAIAACREPKELATT
Ga0075015_10101025613300006102WatershedsMGTDLIIAPQSDSHRYEAVLRISEAIAACREPEELAKTLADQIGKLLH
Ga0070712_10130112023300006175Corn, Switchgrass And Miscanthus RhizosphereMGTDSIIASQGDSHRYEAVLRISEAIAACREPEELARTLADEIGKLLHFDHLYF
Ga0097621_10221904623300006237Miscanthus RhizosphereMGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLRFD
Ga0075425_10261532713300006854Populus RhizosphereMATNPTLPPQSDTHRYEAVVRISKAIAACREPQELA
Ga0075434_10174570613300006871Populus RhizosphereMGTDPIAPQSDSHRYEAVLRISEAIAACREPEDLATTLASEIGKF
Ga0075426_1088388423300006903Populus RhizosphereMATNPTIPPQSDTDRYKAVVRISKAIAACREPQELASTLADEIGK
Ga0066710_10451484013300009012Grasslands SoilMGTEPIVESQTGSYRSEAIVRISETIAACREPEELATTLASEIGKFL
Ga0105247_1005253563300009101Switchgrass RhizosphereMGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLRFDHLYFVV
Ga0137393_1144105913300011271Vadose Zone SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGK
Ga0137363_1108994323300012202Vadose Zone SoilMATEPIVESQTSSYRYEAIVRISETIAACREPEELATTLASEIG
Ga0137399_1114439523300012203Vadose Zone SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGKF
Ga0137362_1018644613300012205Vadose Zone SoilMGTDPIIAPLSDTRRYEAIVRISETIAACREPEEMATTLASEI
Ga0137362_1149369613300012205Vadose Zone SoilMGTEPIVESQTGSYRYEAVVRISEAIAACREPEELARTLADEIGKFLQFDHLYFIVF
Ga0137377_1091606813300012211Vadose Zone SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACREPEQLATTLADEIGKY
Ga0137370_1006665513300012285Vadose Zone SoilMGTEPIVESQTGSYRYEAVVRISEAIAACREPKELARILADEIGKFLQFDHLYFIVFKEN
Ga0137360_1031942613300012361Vadose Zone SoilMGTDPIIAPLSDTRRYEAIVRISETIAACREPEEMATTLASEIRKFLHFDH
Ga0137361_1034984543300012362Vadose Zone SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGKFLNFDHLYFVVLKE
Ga0137398_1090957313300012683Vadose Zone SoilMATEPIVESQTGSYRYEAIVRISETIAACREPEELATTLASEIGKFLHFDHLY
Ga0137397_1136220313300012685Vadose Zone SoilMNTDPIIASRNDRSRFEAVVRISEAITECSEPDELARALADEISKFIH
Ga0137395_1026485613300012917Vadose Zone SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATT
Ga0137395_1067804123300012917Vadose Zone SoilMGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIG
Ga0137359_1026035313300012923Vadose Zone SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGKFLNFDHLYFV
Ga0137419_1000356513300012925Vadose Zone SoilMDSIIVHESDSRHYEAVRRISEAIAACREPEELATTLASEIGKFLHFDHLY
Ga0137419_1191889613300012925Vadose Zone SoilMVTDPIITPEIHSHRYEVVVRISEAIAACREPEQLATTLADEIGKFLNFDHLYFVVL
Ga0137404_1189652713300012929Vadose Zone SoilMRTEPIVESQTGSYRYKEIVRISETIAACREPEEMATTLASEIGKFLHFDHLYFVV
Ga0137407_1033866013300012930Vadose Zone SoilMGTDVIIAPQSGGHRYEAVLRISEAIAACREPEELATTL
Ga0164304_1124046913300012986SoilMGTEPIVESQTDSYRYEAIVRISEAIAACGEPKELW
Ga0157378_1199392713300013297Miscanthus RhizosphereMGTEPLVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGKFLHFD
Ga0137420_146464353300015054Vadose Zone SoilMGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGKFLHSTTFTSLC*
Ga0187890_1055226023300018044PeatlandMATELIVESQTGSYRYEAIVRISEAIAACREPKELATTLADE
Ga0210407_1013323543300020579SoilMGTDPIIAPQSDTRRYEAIVRISEAIAACREPEQLATTLADEIGKFLNF
Ga0210407_1023776713300020579SoilMGTDPIIAPQSDASRYEAVMRISEAIAACGEPEELATNLADE
Ga0210407_1073110223300020579SoilMGTEPIIGPQSDTHRYAAVLRISEAIAACREPEELATTLASEIGKFLQFDHLYFVVLK
Ga0210407_1102977023300020579SoilMGTESIIAPLSDSFRYEAVVRISEAIAACREPEELARTLADEIGKLLPFDHLYFFVF
Ga0210403_1123929613300020580SoilMGTEPIIAPQSDTLRYAAVLRISEAIAACREPEELATTLASEIGKFLQFD
Ga0210399_1091317233300020581SoilMSTDPIIATQCDASRYEAVVRISEAIAACGEPAELATSLANEI
Ga0210399_1150068413300020581SoilMNDTVPVIGDETSSHHYEAVMRISEAIAAYREPEELARTLSVEIGGFLHFDHLYFTVFKENSS
Ga0210395_1014391123300020582SoilMSIDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIG
Ga0210404_1056853313300021088SoilMGTEPIVESQTDSYRYEAIVRISEAIAACRDPEELATTLASE
Ga0210406_1026459643300021168SoilMGTEPIVESQTDSYRYQAIVRISEAIAACREPKELAT
Ga0210406_1092192613300021168SoilMDSIIVHESDSRHYEAVRRISEAIAACREPEQLATTVAAEIGKFLNFDH
Ga0210400_1044688023300021170SoilMNNSLPVIARETSSPRYEAVVRISEAIAACREPEELAHTLADEIGDF
Ga0210400_1122178313300021170SoilMGTESIVESQPGSHRYEAIVRISEAIAACREPKELAATLAVEIGKLLN
Ga0210405_1035940523300021171SoilMDSIIVHESDSRHYEAVRLISEAIAACREPEQLATTLADEIGKF
Ga0210405_1046257923300021171SoilMDSMIVHESNSRHYEAVRRISEAISACRDPEELATTLADEIGKSLN
Ga0210405_1050176813300021171SoilMGTEPIIAPLSDSYRYEAVVRISEAIAACREPEELATTL
Ga0210408_1060926813300021178SoilMDSIIVHESDSRHYEAVRLISEAIAACREPEQLATTLADEIGKFLNFDHLYL
Ga0210396_10006686143300021180SoilMGTDPIIAPQSDTRRYEAIVRISEAIAACREPEQLATTLADEIGKFLNFDHLYLVVLQER
Ga0210396_1111998923300021180SoilMNTDLIVAPQSDSHCYEAVLRISEAIAACREPEELAGALADEIGNFLHF
Ga0210396_1127625413300021180SoilMGTDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIG
Ga0210396_1166761623300021180SoilMTSPESDSHQYKAVLRISEAIAACREPEELARTLADEI
Ga0210393_1167578513300021401SoilMGTDSIIASQVDSHRYEAVLRISEAIAACREPEELARTLADEIG
Ga0210397_1047718413300021403SoilMNNTVAVIARETSSPHYEAVMRISEAIAACREPEELASTLADEIGDFFHFDHLYLTVFKE
Ga0210397_1078410623300021403SoilMGTDSIIASQGDSHRYEAALRISEAIAASREPEELARTLADEIGKLLDFDHLYFVVV
Ga0210389_1048614613300021404SoilMNNSVAVIPRETSSPHYEAVIRISEAIAACREPEELASTLADEIGDFFHF
Ga0210389_1084212613300021404SoilMGTEPIIESQTDSYRYEALVRISEAIAACREPKELATTLADEIGK
Ga0210387_1131445613300021405SoilMGTDPINAPQCDTHRYEAVVRISEAIAACREPEQLATTLADEIGKFLNFDHLYLV
Ga0210387_1136325423300021405SoilMNNTVSVIERETSSYRYEAVMHISEAIAACREPEELAGTLADEIGKLLHFEHL
Ga0210387_1142842913300021405SoilMDSIIVHENDSRHYEAVRRISEAIAGCREPEQLATTLADEIGKF
Ga0210386_1056379433300021406SoilMGTDPISAPQSDSHRYEAVLRISEAIAACREPEELATTLASEIGKFLQFDHLY
Ga0210383_1119721723300021407SoilMGIDLIIAPQSDSHRYEAVLRISEAIAACREPEDLATTLASEIGKF
Ga0210394_1030065323300021420SoilMGTDPIIAPQSDTHRYQAVLRISEAIAACREPEELATTLASEIGK
Ga0210394_1147868723300021420SoilMSIDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIGKLLH
Ga0210394_1174181113300021420SoilMSTDPIIAPQRDASRYEAVMRISEAIAACGEPEELATSLADEIGKFLQFDHL
Ga0210384_1052443533300021432SoilMGTDPIIAPQSDTHRYEAVVRISEAIAACREPEQLATTLA
Ga0210384_1168467023300021432SoilMGTDSIIASQVDSHRYEAVLRISEAIAACREPEELARTLAD
Ga0210391_1033410113300021433SoilMGTDPIIAPQCDTHRYEAVLRISEAIAACREPEELATTLASEIGKFLHFDHLY
Ga0210391_1035718413300021433SoilMGTDPITAPQCDASRYEAVVRISEAIAACGEPEELATSLADEIGKFLQFDHLYFIVFK
Ga0210391_1115222513300021433SoilMSTEPIVESQADSYRYEAIVRISEAIAACREPEELASTLTD
Ga0210390_1053123233300021474SoilMGIDPIVAPQSDSHRYEAVLRISEAIAACREPEDLATTLASEIGKFLHF
Ga0210390_1085300023300021474SoilMSTDLIISPQTDSQRYEAVLRISEAIAACPEPEELAGTLADEIGKFL
Ga0210398_1070949213300021477SoilMGTDLLIAPQSGNHRYDAVLRISEAIAACREPEELASTLAGEIDKLL
Ga0210402_1029545043300021478SoilMGTDPIIAPQCDASRYEAVMRISEAIAACGEPEELATSLADEIGKFLQFDHL
Ga0210410_1078015113300021479SoilMGTDPFITPQCDTHRYEAVLRISEAIAECREPEELATTLA
Ga0210410_1081952813300021479SoilMGTESIVESQPGSYRYEAIVRISEAIAACREPKELATTLADEIGKLLNFDHLYFVVVKEN
Ga0242677_108287113300022713SoilMGTDLLIAPQSGNHRYDAVLRISEAIAACREPEELASTLAGEIDKLLHIDHLYFFVFK
Ga0233356_102899513300023046SoilMGTDAIIAPQSETHRYETVVRISEAIAACREPEQLATTLASEIGKFLNFD
Ga0137417_121102213300024330Vadose Zone SoilMGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGKFTTLA
Ga0207699_1055937823300025906Corn, Switchgrass And Miscanthus RhizosphereMGTDSIIASQGDSHRYEAVLRISEAIAACREPEELARTLADEIGKLLHFDHLYFVV
Ga0207646_1008752553300025922Corn, Switchgrass And Miscanthus RhizosphereMATNPTLPPPSDTHRYEAVVRISKAIAACREPQELASTLADEIGKVLQFDH
Ga0207712_1164673623300025961Switchgrass RhizosphereMGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLAD
Ga0209438_117432213300026285Grasslands SoilMGTDPIIAPLSDTHRYEAVVRISEAIAACHEPEELATTLADEIGKF
Ga0209235_104355813300026296Grasslands SoilMGTEPIVEPQTGSYRYEAVVRISEAIAACREPEELARTLADEIGKFLQFD
Ga0209238_100237973300026301Grasslands SoilMGTEPIVESQTGSYRYEAIVRISETIAACREPEELATT
Ga0179587_1043789813300026557Vadose Zone SoilMGTDLMIEPQSDSLRYGAVLRISEAIAACREPEELATTLASEIDK
Ga0207949_101419313300026999Forest SoilMGTDPFITPQCDTHRYEAVLRISEAIAECREPEELATTLASEIGKFL
Ga0208860_101701623300027076Forest SoilMGTDLIIAPQSDSHRYEAVLRISEAIAACREPEELATT
Ga0209115_109339913300027567Forest SoilMATNPPITPQSDMHRYKAVVRVSEAIAACREPDELARTLADELDKLLQFDHLYFVVL
Ga0209333_110728923300027676Forest SoilMGTEPIVESQIGDSQTDSYRYEAIVRTSEAIAACREPKELATTLADEIGKLLDFDHLYFA
Ga0209248_1000450713300027729Bog Forest SoilMNNTVPVIARDTGSRHYEAVMCISEAIAACREPEELASALADEVGDFLHFDHLYLTVFKE
Ga0209580_1060487513300027842Surface SoilMGTDPIIAPQCDASRYEAVVRISEAIAVCRKPKELATTLADEIGKLLDFDH
Ga0209580_1067957013300027842Surface SoilMATNPTLPPQSDTHRYEAVVRISKAIAACREPQELASTL
Ga0209693_1050640713300027855SoilMGTDLIIAPQSDGRRYEAVLHISEAIAACREPGELATTLASEIGKFLH
Ga0209283_1065293323300027875Vadose Zone SoilMGTEPIVESQTGSYRYEAIVRISETIAACREPEEMAT
Ga0209624_1086318713300027895Forest SoilMATEPIVESQRDSYRYEAVVRISEAITASREPKELATTLADEIGKLLDFDHLY
Ga0209006_1129163713300027908Forest SoilMGTDPIIASQSDSHRYEAVLRISEAIAACREPEELARTLADEIGKFL
Ga0265355_101892513300028036RhizosphereMDTEPIVESQIDSYRYEAIVRISEVIAACREPKELATTLADEIGKLLNYD
Ga0137415_1001729273300028536Vadose Zone SoilMDSIIVHESDSRHYEAVRRISEAIAACREPEELATTLASEIGKFLHFDHLYFVVLKEN
Ga0222749_1028554723300029636SoilMGTDPIIAPQSDTHRYEAVLRISEAIAACGEPEQLAITLADEIGKFLNFD
Ga0265741_10002813300030814SoilMDTEPIVESQIDSYRYEAIVRISEVIAACREPKELATTLADEIGKLLNYDHLFFVVVKENTQ
Ga0310686_10655469913300031708SoilMGIDPIVESQTDSYRYEAIVRISEATAACREPKELATTLADEIGKLLNFDHLYF
Ga0307476_1046621433300031715Hardwood Forest SoilMGTDPFITPQCDTHRYEAVLRISEAIAECREPEELATTLASE
Ga0307476_1087153413300031715Hardwood Forest SoilMGTDLMIAPQSDSQRYEAVLRISEAIAACREPEEL
Ga0307476_1098677523300031715Hardwood Forest SoilMDCKAMGTDLIIAPQSDSQRYEAVVRISEAIAACREPEQLATTLADE
Ga0307474_1007462813300031718Hardwood Forest SoilMGTGPIIAPQSDSRRYEAVLRIGEAIAACREPEDLATTLACEIGKFLHFEHLYF
Ga0307474_1041717623300031718Hardwood Forest SoilMGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLNFDHL
Ga0307474_1069359413300031718Hardwood Forest SoilMGTDPIIAPQSDTHRYEAVVRISEAIAACREPEQLATTLADEIGKFLN
Ga0307477_1005866213300031753Hardwood Forest SoilVWIVYGYSLIIAPQSDSYRYEAVLRISEAIAACREPEELAKTLA
Ga0307475_1012689013300031754Hardwood Forest SoilMGTDPFIAPQSDNHRYEAVLRISEAIAACREPEELA
Ga0307475_1014331613300031754Hardwood Forest SoilMGTDPIIAPESDSHRYEAVLRISEAIAACREPEEL
Ga0307475_1051326113300031754Hardwood Forest SoilMGTEPITEFQRDCHRYEAVMRISEAIAACREPDELA
Ga0307478_1002657443300031823Hardwood Forest SoilMNNLVPVIARETSSPRYEAVVRISEAIAACREPEELARTLADEIGD
Ga0307478_1014902113300031823Hardwood Forest SoilMGTDPIVAPQSDSHRYEAVLRISEAIAACREPEELAKTLADQIGKFLH
Ga0307478_1033139933300031823Hardwood Forest SoilMNNTVPVIARETSSHRYEAVMRISEAIAACRDPEELASTLADEIGDFLHFDH
Ga0307478_1058567923300031823Hardwood Forest SoilMNNSLPVIARETSSPRYEAVVRISEAIAACREPEELARTLADEIGDFLHFDHLY
Ga0307478_1150870213300031823Hardwood Forest SoilMGTDLIIAPQSETQRYEAVVRISEAIAACREPEQLATTLADEIGKFLN
Ga0307479_1002775513300031962Hardwood Forest SoilMGTEPMLESQTGSYRYEAIVRISETIAACREPEELATTVASEI
Ga0307479_1005039613300031962Hardwood Forest SoilMGTDSIIAPQSDSHRYEAVLRISEAIAECREPEELATTLASEIGKFLYFDHLYF
Ga0307479_1072754013300031962Hardwood Forest SoilMNKAVPVIAREPRSHHYEAVMRISEAIAACREPEELARTLADEMGAFLHFDLL
Ga0307479_1096602823300031962Hardwood Forest SoilMGTDPIIAPQSDSNRYEAVLRISEAIAACREPEELATTLASEIGKFLHFD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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