Metagenome / Metatranscriptome Family F062054

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062054
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	43 residues
Representative Sequence	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARTGD
Number of Associated Samples	90
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.38 %
% of genes near scaffold ends (potentially truncated)	28.24 %
% of genes from short scaffolds (< 2000 bps)	84.73 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.962 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.588 % of family members)
Environment Ontology (ENVO)	Unclassified (40.458 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.489 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.66% β-sheet: 0.00% Coil/Unstructured: 56.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF08768	THAP4_heme-bd	54.96
PF02635	DrsE	15.27
PF07685	GATase_3	6.87
PF00392	GntR	3.05
PF01571	GCV_T	2.29
PF01475	FUR	2.29
PF08353	MurT_C	1.53
PF13586	DDE_Tnp_1_2	0.76
PF00582	Usp	0.76
PF01828	Peptidase_A4	0.76
PF02728	Cu_amine_oxidN3	0.76
PF04978	DUF664	0.76
PF01553	Acyltransferase	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	2.29
COG0769	UDP-N-acetylmuramyl tripeptide synthase	Cell wall/membrane/envelope biogenesis [M]	1.53
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
All Organisms	root	All Organisms	45.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
cellular organisms	root	All Organisms → cellular organisms	45.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.72 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	2.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	15.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.34 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	2.29 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.34 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4.58 %
Vibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio	2.29 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.53 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.34 %
Vibrio harveyi group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group	2.29 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	2.29 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.53 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.76 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.34 %
Vibrio parahaemolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus	2.29 %
Nonomuraea coxensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea coxensis	1.53 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.53 %
Nonomuraea wenchangensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea wenchangensis	0.76 %
Microbispora rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → Microbispora rosea	0.76 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105554042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1430	Open in IMG/M
3300004633\|Ga0066395_10028196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2314	Open in IMG/M
3300004633\|Ga0066395_10250990	Not Available	949	Open in IMG/M
3300005332\|Ga0066388_100218366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2535	Open in IMG/M
3300005332\|Ga0066388_100356326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2109	Open in IMG/M
3300005332\|Ga0066388_100970064	Not Available	1418	Open in IMG/M
3300005332\|Ga0066388_101303240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1252	Open in IMG/M
3300005332\|Ga0066388_101449678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1197	Open in IMG/M
3300005332\|Ga0066388_105471634	Not Available	643	Open in IMG/M
3300005363\|Ga0008090_10071678	Not Available	757	Open in IMG/M
3300005363\|Ga0008090_15854244	Not Available	686	Open in IMG/M
3300005435\|Ga0070714_100454667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1217	Open in IMG/M
3300005467\|Ga0070706_100007445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10263	Open in IMG/M
3300005471\|Ga0070698_100042493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	4663	Open in IMG/M
3300005713\|Ga0066905_100898562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	775	Open in IMG/M
3300005764\|Ga0066903_100426584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2199	Open in IMG/M
3300005764\|Ga0066903_100530151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2009	Open in IMG/M
3300005764\|Ga0066903_101046372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1498	Open in IMG/M
3300005764\|Ga0066903_101676434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1209	Open in IMG/M
3300005764\|Ga0066903_105092967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea coxensis	696	Open in IMG/M
3300005764\|Ga0066903_106817435	Not Available	593	Open in IMG/M
3300006028\|Ga0070717_11249029	Not Available	676	Open in IMG/M
3300006175\|Ga0070712_100252999	Not Available	1409	Open in IMG/M
3300006176\|Ga0070765_100609303	Not Available	1030	Open in IMG/M
3300006804\|Ga0079221_10155730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1201	Open in IMG/M
3300006806\|Ga0079220_10130265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1356	Open in IMG/M
3300006854\|Ga0075425_100889449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1018	Open in IMG/M
3300006854\|Ga0075425_102358087	Not Available	591	Open in IMG/M
3300006871\|Ga0075434_100006506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10714	Open in IMG/M
3300006904\|Ga0075424_101951260	Not Available	620	Open in IMG/M
3300006954\|Ga0079219_10554162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea coxensis	825	Open in IMG/M
3300009089\|Ga0099828_10096234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2553	Open in IMG/M
3300010043\|Ga0126380_10000078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22667	Open in IMG/M
3300010043\|Ga0126380_10348194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1077	Open in IMG/M
3300010046\|Ga0126384_10281598	Not Available	1359	Open in IMG/M
3300010046\|Ga0126384_11177327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300010047\|Ga0126382_10197846	Not Available	1427	Open in IMG/M
3300010048\|Ga0126373_11090643	Not Available	864	Open in IMG/M
3300010048\|Ga0126373_11457748	Not Available	750	Open in IMG/M
3300010048\|Ga0126373_13170473	Not Available	512	Open in IMG/M
3300010154\|Ga0127503_10901747	Not Available	823	Open in IMG/M
3300010358\|Ga0126370_10254290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1365	Open in IMG/M
3300010360\|Ga0126372_11839349	Not Available	649	Open in IMG/M
3300010361\|Ga0126378_10265297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1814	Open in IMG/M
3300010361\|Ga0126378_10442983	Not Available	1413	Open in IMG/M
3300010361\|Ga0126378_10638162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1178	Open in IMG/M
3300010361\|Ga0126378_12675772	Not Available	570	Open in IMG/M
3300010366\|Ga0126379_10250065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1745	Open in IMG/M
3300010366\|Ga0126379_12233264	Not Available	648	Open in IMG/M
3300010379\|Ga0136449_103536683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus	594	Open in IMG/M
3300010398\|Ga0126383_12150456	Not Available	645	Open in IMG/M
3300010398\|Ga0126383_13239123	Not Available	532	Open in IMG/M
3300010880\|Ga0126350_11643661	Not Available	633	Open in IMG/M
3300012199\|Ga0137383_10375153	Not Available	1042	Open in IMG/M
3300012211\|Ga0137377_11358711	Not Available	640	Open in IMG/M
3300012211\|Ga0137377_11902010	Not Available	512	Open in IMG/M
3300012948\|Ga0126375_10413279	Not Available	979	Open in IMG/M
3300012971\|Ga0126369_10280563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1656	Open in IMG/M
3300012971\|Ga0126369_10874630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	983	Open in IMG/M
3300012971\|Ga0126369_11888864	Not Available	686	Open in IMG/M
3300012971\|Ga0126369_11918555	Not Available	681	Open in IMG/M
3300012971\|Ga0126369_13634824	Not Available	505	Open in IMG/M
3300015371\|Ga0132258_11033818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2076	Open in IMG/M
3300016404\|Ga0182037_10107475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2022	Open in IMG/M
3300016404\|Ga0182037_10147279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1769	Open in IMG/M
3300016422\|Ga0182039_10634540	Not Available	937	Open in IMG/M
3300021086\|Ga0179596_10569486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus	575	Open in IMG/M
3300021407\|Ga0210383_10144522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2019	Open in IMG/M
3300021432\|Ga0210384_10344154	Not Available	1343	Open in IMG/M
3300021559\|Ga0210409_10639072	Not Available	934	Open in IMG/M
3300021560\|Ga0126371_10254834	Not Available	1870	Open in IMG/M
3300021560\|Ga0126371_10919295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1018	Open in IMG/M
3300021560\|Ga0126371_11139282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea wenchangensis	918	Open in IMG/M
3300021560\|Ga0126371_11610694	Not Available	775	Open in IMG/M
3300021560\|Ga0126371_11784115	Not Available	737	Open in IMG/M
3300021560\|Ga0126371_12250672	Not Available	658	Open in IMG/M
3300025910\|Ga0207684_10027494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4847	Open in IMG/M
3300025915\|Ga0207693_11442410	Not Available	510	Open in IMG/M
3300026498\|Ga0257156_1010392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1770	Open in IMG/M
3300026551\|Ga0209648_10126124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2057	Open in IMG/M
3300027725\|Ga0209178_1030157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1705	Open in IMG/M
3300027765\|Ga0209073_10483554	Not Available	520	Open in IMG/M
3300027787\|Ga0209074_10292556	Not Available	648	Open in IMG/M
3300027857\|Ga0209166_10005569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8571	Open in IMG/M
3300027874\|Ga0209465_10388361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus	699	Open in IMG/M
3300028906\|Ga0308309_10970717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	737	Open in IMG/M
3300031543\|Ga0318516_10023512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → Microbispora rosea	3181	Open in IMG/M
3300031543\|Ga0318516_10047110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2336	Open in IMG/M
3300031543\|Ga0318516_10097944	Not Available	1655	Open in IMG/M
3300031543\|Ga0318516_10162211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1285	Open in IMG/M
3300031544\|Ga0318534_10162169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1291	Open in IMG/M
3300031546\|Ga0318538_10397568	Not Available	745	Open in IMG/M
3300031546\|Ga0318538_10603661	Not Available	595	Open in IMG/M
3300031546\|Ga0318538_10686297	Not Available	555	Open in IMG/M
3300031549\|Ga0318571_10325881	Not Available	584	Open in IMG/M
3300031561\|Ga0318528_10682585	Not Available	550	Open in IMG/M
3300031564\|Ga0318573_10362528	Not Available	778	Open in IMG/M
3300031681\|Ga0318572_10977582	Not Available	503	Open in IMG/M
3300031719\|Ga0306917_11337831	Not Available	554	Open in IMG/M
3300031724\|Ga0318500_10524913	Not Available	596	Open in IMG/M
3300031747\|Ga0318502_11029826	Not Available	502	Open in IMG/M
3300031763\|Ga0318537_10182001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	783	Open in IMG/M
3300031765\|Ga0318554_10464106	Not Available	717	Open in IMG/M
3300031769\|Ga0318526_10034374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1866	Open in IMG/M
3300031769\|Ga0318526_10123236	Not Available	1046	Open in IMG/M
3300031769\|Ga0318526_10366121	Not Available	589	Open in IMG/M
3300031770\|Ga0318521_10411121	Not Available	807	Open in IMG/M
3300031771\|Ga0318546_10910437	Not Available	619	Open in IMG/M
3300031782\|Ga0318552_10037737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2247	Open in IMG/M
3300031792\|Ga0318529_10054068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1737	Open in IMG/M
3300031793\|Ga0318548_10548148	Not Available	564	Open in IMG/M
3300031797\|Ga0318550_10334454	Not Available	734	Open in IMG/M
3300031799\|Ga0318565_10211311	Not Available	943	Open in IMG/M
3300031805\|Ga0318497_10244409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	995	Open in IMG/M
3300031846\|Ga0318512_10282791	Not Available	822	Open in IMG/M
3300031879\|Ga0306919_10141909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1743	Open in IMG/M
3300031896\|Ga0318551_10334209	Not Available	856	Open in IMG/M
3300031897\|Ga0318520_10323064	Not Available	933	Open in IMG/M
3300031912\|Ga0306921_11931989	Not Available	631	Open in IMG/M
3300031945\|Ga0310913_10118155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1808	Open in IMG/M
3300031945\|Ga0310913_10399950	Not Available	974	Open in IMG/M
3300031981\|Ga0318531_10500687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300032001\|Ga0306922_11209072	Not Available	769	Open in IMG/M
3300032008\|Ga0318562_10202054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1151	Open in IMG/M
3300032043\|Ga0318556_10398091	Not Available	720	Open in IMG/M
3300032044\|Ga0318558_10278692	Not Available	825	Open in IMG/M
3300032052\|Ga0318506_10209463	Not Available	861	Open in IMG/M
3300032060\|Ga0318505_10132246	Not Available	1148	Open in IMG/M
3300032063\|Ga0318504_10243592	Not Available	845	Open in IMG/M
3300032065\|Ga0318513_10022511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2650	Open in IMG/M
3300032076\|Ga0306924_11276012	Not Available	790	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.18%
Host-Associated	Host-Associated	3.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.42%
Plants	Host-Associated → Plants	3.82%
Aquatic	Environmental → Aquatic	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.05%
Freshwater	Environmental → Aquatic → Freshwater	0.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.34%
Loam	Environmental → Terrestrial → Soil → Loam	19.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.05%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.34%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.53%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.53%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.05%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.53%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.53%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1055540423	3300000956	Soil	MQGMLSGGLLTASFAAVAGLALVVLVRLFWISRPGGRKARTGD*
Ga0066395_100281962	3300004633	Tropical Forest Soil	MQGMLSGGLLAAAFAAVAGFALVVLVRLFWISRPGGRRARTGD*
Ga0066395_102509902	3300004633	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALVVLVRLSRISRPGGGKTRTGD*
Ga0066388_1002183662	3300005332	Tropical Forest Soil	MQGMLSGVLLTAAFGAVAGFALVVLVRLFRISRPGGRKARTGD*
Ga0066388_1003563263	3300005332	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIVLARLSRISRPGGGKTRTGD*
Ga0066388_1009700641	3300005332	Tropical Forest Soil	MQGMLSGGLLTAAFAAGAGFALVVLVRLFRIGRPGGRKARTGG*
Ga0066388_1013032402	3300005332	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLLWISRPGDRKARAGG*
Ga0066388_1014496782	3300005332	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGLALVVLARLVRISRPGGRKARTGG*
Ga0066388_1054716341	3300005332	Tropical Forest Soil	MQGMLSGALLVAAFAAVAGSGLVVLVRLFRISRPGGRKARTGA*
Ga0008090_100716782	3300005363	Tropical Rainforest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLFWISRRGDRKARTGG*
Ga0008090_158542442	3300005363	Tropical Rainforest Soil	MQGMLSGGLLTAAFVAAAGFALIVLGRLFRISRPGGGKARTGD*
Ga0070714_1004546673	3300005435	Agricultural Soil	MQGMLSGGLLTAGFAAVAGFALVVLVRLLRISRPGGRKARTGD*
Ga0070706_1000074457	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARAGG*
Ga0070698_1000424935	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARAGG*
Ga0066905_1008985622	3300005713	Tropical Forest Soil	MLGMLSGGLLTAAFAAVAGLALVVLARLIRISRPGGRKARTGG*
Ga0066903_1004265841	3300005764	Tropical Forest Soil	MQGMLGGGLLAAAFAAVAGFALVVLVRLFRISRPGGRKARAGD*
Ga0066903_1005301512	3300005764	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLFWISRPGGRKARTGG*
Ga0066903_1010463722	3300005764	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARTDG*
Ga0066903_1016764342	3300005764	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIALVRLFRIGRPGGGQARTGD*
Ga0066903_1050929672	3300005764	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGLALVMLVRLFWISRPGDRKARAGD*
Ga0066903_1068174352	3300005764	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLSRISRPGGGKTRTGD*
Ga0070717_112490291	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PLRTLRCMQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARAGG*
Ga0070712_1002529992	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQGMLSGGLLTAGFAAVAGFALVVLVRLLRISRPGGGKARTGD*
Ga0070765_1006093032	3300006176	Soil	MQGMVSGGLLAAVFAATAGIALLVLVRLFRISRPGGPKARTGA*
Ga0079221_101557301	3300006804	Agricultural Soil	MQGILSGGLLTASFAAVAGLALVVLVRLLRISRPGGRKARTGD*
Ga0079220_101302652	3300006806	Agricultural Soil	MQGMLSGGLLTASFAAVAGLALVVLVRLLRISRPGGRKARTGD*
Ga0075425_1008894492	3300006854	Populus Rhizosphere	MQEMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG*
Ga0075425_1023580872	3300006854	Populus Rhizosphere	MQGMLSGGLLTAAFAAVAGFALLVLVRLFRISRPGGGKARTGG*
Ga0075434_10000650611	3300006871	Populus Rhizosphere	MQGMLSGGLLTASFAAVAGLALVVLVRLLWISRPGGRKARTGD*
Ga0075424_1019512602	3300006904	Populus Rhizosphere	MQGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRTARTGG*
Ga0079219_105541622	3300006954	Agricultural Soil	MQEMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRTARTGG*
Ga0099828_100962343	3300009089	Vadose Zone Soil	MLGGGLLVAAFAAVAGFALIVLARLFRISRPGGRKARARG*
Ga0126380_1000007813	3300010043	Tropical Forest Soil	MLSGGLLTAAFAAVAGLALVVLARLIRISRPGGRKARTGG*
Ga0126380_103481942	3300010043	Tropical Forest Soil	MQGMLSGGLLTASFAAVAGLALVVLVRLFLISGPGRRKARTGD*
Ga0126384_102815981	3300010046	Tropical Forest Soil	MLSGGLLTAAFAAVAGLALVVLACLIRISRPGGRKARTGG*
Ga0126384_111773272	3300010046	Tropical Forest Soil	MQGMLSGVLLTAAFGAAAGFALMVLVRLFRISRPAGRKARTSD*
Ga0126382_101978462	3300010047	Tropical Forest Soil	MQGMLSGALVVAAFAAVAGSGLVVLVRLFRISRPGGRKARTGA*
Ga0126373_110906431	3300010048	Tropical Forest Soil	YRMGVRCMQGMLSGALLVAAFAAVAGSGLVVLVRLFRISRPGGRKARTGA*
Ga0126373_114577481	3300010048	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG*
Ga0126373_131704732	3300010048	Tropical Forest Soil	MQGMLGGGLLTAAFAAVAGLALVVLVRLFWISRPGGRKARTGG*
Ga0127503_109017471	3300010154	Soil	SGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARAGG*
Ga0126370_102542902	3300010358	Tropical Forest Soil	MISGGLLTAAFAAAAGFALVVLVRLFRISRPGGRRARTGG*
Ga0126372_118393491	3300010360	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLFWISRPGVRKAHAGD*
Ga0126378_102652973	3300010361	Tropical Forest Soil	MISGGLLTAAFAAVAGFALVVLVRLFRISRPGGRRARTGG*
Ga0126378_104429832	3300010361	Tropical Forest Soil	MQGLLSGGLLTAAFVAVAGFALIVLVRLSRISRPGGGKTRTGD*
Ga0126378_106381621	3300010361	Tropical Forest Soil	MQGMLSGALLVAAFAAVAGSGLVVLVRLFRISRPGGRKART
Ga0126378_126757721	3300010361	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLFWISRPGGRRARTGD*
Ga0126379_102500652	3300010366	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLFWISRPGGRKARAGD*
Ga0126379_122332642	3300010366	Tropical Forest Soil	MQGMLSGGLLAAAFAAVAGFVLVVLVRLFWISRPGGRRARTGD*
Ga0136449_1035366832	3300010379	Peatlands Soil	MVSGGLLAVVFTAVAGSALVLLVRLFRISRPGRGGARTGA*
Ga0126383_121504561	3300010398	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALIVLVRLLRISRPGDRKARAGD*
Ga0126383_132391231	3300010398	Tropical Forest Soil	MISGGLLTAAFAAVAGFALVVLVRLFRISRPGCRRARTGG*
Ga0126350_116436612	3300010880	Boreal Forest Soil	MVSGGLLAAVFAAAAGIALVVLVRLFRISRPGGPK
Ga0137383_103751532	3300012199	Vadose Zone Soil	MQGMLSGGLLTAAFVAVVGFALIVLVCLFRISRPGGGKARASG*
Ga0137377_113587111	3300012211	Vadose Zone Soil	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARAS
Ga0137377_119020102	3300012211	Vadose Zone Soil	MQGMLSGGLLVAVFAAVAGAALVVLLRLFRISRPSRSEARTSD*
Ga0126375_104132792	3300012948	Tropical Forest Soil	MLSGGLLTAAFAAVAGLALVVLARLIRISRSGGRKARTGG*
Ga0126369_102805632	3300012971	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLSRISRPGRRQDAHR*
Ga0126369_108746302	3300012971	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKARTDG*
Ga0126369_118888642	3300012971	Tropical Forest Soil	MQGMLSGGLLAAAFAAVAGFALVVLVRLCWISRPGDRKARTGG*
Ga0126369_119185552	3300012971	Tropical Forest Soil	MQGMLGGGLLAAAFAAVAGFALVVLVRLFRISRPGGRKARGGD*
Ga0126369_136348241	3300012971	Tropical Forest Soil	MQGMLSGGLLTASFAAVAGLALVVLVRLFWISRPGGHKAHTGD*
Ga0132258_110338182	3300015371	Arabidopsis Rhizosphere	MLSGVLLTAAFAAVAGFALVVLVRLLRISRPAGRKARAGD*
Ga0182037_101074751	3300016404	Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDR
Ga0182037_101472794	3300016404	Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLSRISRPGGGK
Ga0182039_106345401	3300016422	Soil	PTRVRCMQGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG
Ga0179596_105694862	3300021086	Vadose Zone Soil	MLGGGLLVAAFAAVAGFALIVLARLFRIGRPGGRKARARG
Ga0210383_101445221	3300021407	Soil	MVSGGLLAVVFTAVAGSALVLLVRLFRISRPGRGGARTGA
Ga0210384_103441542	3300021432	Soil	MVSGGLLAAVFAATAGIALLVLVRLFRISRPGGPKARTGA
Ga0210409_106390721	3300021559	Soil	MVSAGLLAAGFAAAAGIAVLVLVRLFRISRPGGPRARTGA
Ga0126371_102548343	3300021560	Tropical Forest Soil	MQGMLSGGLLAAAFAAVAGFALVVLVRLFWISRPGGRRARTGD
Ga0126371_109192952	3300021560	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLSRISRPGRRQDAHR
Ga0126371_111392822	3300021560	Tropical Forest Soil	MQGMLGGGLLAAAFAAVAGFALVVLVRLFRISRPGGRKARAGD
Ga0126371_116106941	3300021560	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLFWISRPGGRKARTGG
Ga0126371_117841151	3300021560	Tropical Forest Soil	RSMQGMLSGGLLVAAFAAIAGCALVVLVRLIRISRPGGPKARTGG
Ga0126371_122506721	3300021560	Tropical Forest Soil	MQGMLSGGLLTAAFAAVAGFALVVLLRLFWISRPGDRKAHTGG
Ga0207684_100274945	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARAGG
Ga0207693_114424102	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	QGMLSGGLLTAGFAAVAGFALVVLVRLLRISRPGGGKARTGD
Ga0257156_10103923	3300026498	Soil	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARASG
Ga0209648_101261242	3300026551	Grasslands Soil	MLGGGLLVAAFAAVAGFALIVLARLFRISRPGGRKARARG
Ga0209178_10301572	3300027725	Agricultural Soil	MQGMLSGGLLTASFAAVAGLALVVLVRLLRISRPGGRKARTGD
Ga0209073_104835541	3300027765	Agricultural Soil	MQGMLSGGLLTASFAAVAGFALVVLVRLLRISRPGGRKARTGD
Ga0209074_102925562	3300027787	Agricultural Soil	MQGMLSGGLLTAGFAAVAGFALVVLVRLLRISRPGGRKARTGD
Ga0209166_100055697	3300027857	Surface Soil	MQGMLSGGLLAVVFAAVAGVALVVLARLFRISRPGRPQAAAGD
Ga0209465_103883611	3300027874	Tropical Forest Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLSRISRPGGGKTRTGD
Ga0308309_109707172	3300028906	Soil	MQGMVSGGLLAAVFAATAGIALLVLVRLFRISRPGGPKARTGA
Ga0318516_100235123	3300031543	Soil	MQGMLSGGLLVAAFVAVAGFALIVLVRLSRISRPGGGQTRTGD
Ga0318516_100471104	3300031543	Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKARTGD
Ga0318516_100979443	3300031543	Soil	MLSGGLLVAAFAAVAGCALIVLVRLFRISRPGGPKARTGD
Ga0318516_101622113	3300031543	Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKTRTGD
Ga0318534_101621691	3300031544	Soil	MQGMLSGELLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG
Ga0318538_103975682	3300031546	Soil	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKTRTGD
Ga0318538_106036611	3300031546	Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLVRISRPGDRKARTGG
Ga0318538_106862971	3300031546	Soil	MQGLLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKTRTGD
Ga0318571_103258812	3300031549	Soil	MQGMLSGGLLTAAFAAVAGFALLVLVRLVRIARPGSRKARAGG
Ga0318528_106825851	3300031561	Soil	MQGMLSGGLLVAAFVAVAGFALIVLMRLSRISRPGGGQTR
Ga0318573_103625281	3300031564	Soil	MQGMLSGGLLVAAFAAVAGCALIVLVRLFRISRPGGPKARTGD
Ga0318572_109775822	3300031681	Soil	RDPTRVRSMQGMLSGGLLVAAFAAVAGCALIVLVRLFRISRPGGPKARTGG
Ga0306917_113378311	3300031719	Soil	SGGLLTAAFAAVAGFALLVLVRLFRIGRPGGRKARAGG
Ga0318500_105249132	3300031724	Soil	GGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG
Ga0318502_110298261	3300031747	Soil	MQGMLSGELLTAAFAAVAGFALVVLVRLLRISRPGDR
Ga0318537_101820012	3300031763	Soil	MQGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKARTGD
Ga0318554_104641062	3300031765	Soil	MQGMLSGGLLTAAFAAVAGFALLVLVRLVRIGRPGGRKARAGG
Ga0318526_100343744	3300031769	Soil	HPMGVRCMQGLLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKTRTGD
Ga0318526_101232361	3300031769	Soil	MQGMLSGGLLVAAFVAVAGFALIVLVRLSRISRPGGGKTRTGD
Ga0318526_103661211	3300031769	Soil	GLLTAAFAAVAGFALVVLVRLVRISRPGDRKARTGG
Ga0318521_104111211	3300031770	Soil	MHGMLSGGLLTAAFAAVAGFALIVLVRLFRISRPGGGKTRTGD
Ga0318546_109104371	3300031771	Soil	MLSGGLLVAAFAAVAGCALIVLVRLFRISRPGGPKARTGG
Ga0318552_100377371	3300031782	Soil	LIGGLLVAAFVAVAGFALIVLVRLSRISRPGGGQTRTGD
Ga0318529_100540681	3300031792	Soil	PMGVRCMQGMLSGGLLVAAFVAVAGFALIVLVRLSRISRPGGGQTRTGD
Ga0318548_105481482	3300031793	Soil	QGMLSGGLLVAAFAAVAGCALIVLVRLFRISRPGGPKARTGD
Ga0318550_103344542	3300031797	Soil	SGPTRVRCMQGMLSGGLLTAAFAAVAGFALVVLVRLVRISRPGDRKARTGG
Ga0318565_102113111	3300031799	Soil	TRVRCMQGMLSGGLLTAAFAAVAGFALVVLVRLVRISRPGDRKARTGG
Ga0318497_102444092	3300031805	Soil	MQGMLSGGLLTAAFAAVAGFALLVLVRLFRIGRPGGRKARAGG
Ga0318512_102827911	3300031846	Soil	VRCMQGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG
Ga0306919_101419093	3300031879	Soil	MQGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG
Ga0318551_103342092	3300031896	Soil	SSPPLRTLRCMQGMLSGGLLTAAFAAVAGFALLVLVRLFRIGRPGGRKARAGG
Ga0318520_103230642	3300031897	Soil	FKAWPLRTLRCMQGMLSGGLLTAAFAAVAGFALLVLVRLFRIGRPGGRKPRAGG
Ga0306921_119319891	3300031912	Soil	QGMLSGGLLTAAFAAVAGFALVMLVRLFWISRPGGRKARTGG
Ga0310913_101181551	3300031945	Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKART
Ga0310913_103999502	3300031945	Soil	GVRRMQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKARTGD
Ga0318531_105006871	3300031981	Soil	QGMLSGGLLTAAFAAVAGFALVVLVRLLRISRPGDRKARTGG
Ga0306922_112090721	3300032001	Soil	MQGMLSGGLLTAAFAAVAGFALLVLVRLFRIARPGGRKARAGG
Ga0318562_102020543	3300032008	Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGG
Ga0318556_103980911	3300032043	Soil	CMQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKTRTGD
Ga0318558_102786921	3300032044	Soil	PRHPMGVRCMQGMLSGGLLVAAFVAVAGFALIVLVRLSRISRPGGGQTRTGD
Ga0318506_102094632	3300032052	Soil	PTRVRCMQGMLSGGLLTAAFAAVAGFALVVLVRLVRISRPGDRKARTGG
Ga0318505_101322462	3300032060	Soil	PMGVRCMQGMLSGGLLTAAFVAVAGVALIVLVRLFRISRPGGGKARTGD
Ga0318504_102435922	3300032063	Soil	CMQGMLSGGLLTAAFAAVAGFALVVLVRLVRISRPGDRKARTGG
Ga0318513_100225111	3300032065	Soil	TRVRSMQGMLSGGLLVAAFAAVAGCALIVLVRLFRISRPGGPKARTGG
Ga0306924_112760122	3300032076	Soil	MQGMLSGGLLTAAFVAVAGFALIVLVRLFRISRPGGGKTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062054

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences