Metagenome / Metatranscriptome Family F062397

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062397
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	58 residues
Representative Sequence	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Number of Associated Samples	108
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.62 %
% of genes near scaffold ends (potentially truncated)	56.15 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.077 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (59.231 % of family members)
Environment Ontology (ENVO)	Unclassified (81.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (53.077 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF14111	DUF4283	0.77
PF00225	Kinesin	0.77
PF08284	RVP_2	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
All Organisms	root	All Organisms	46.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
cellular organisms	root	All Organisms → cellular organisms	46.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	46.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	5.38 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	5.38 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	5.38 %
Sorghinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	5.38 %
Sorghum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	3.85 %
Panicum miliaceum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	0.77 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	0.77 %
Panicum sect. Panicum	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.08 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	3.85 %
Panicum hallii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	0.77 %
Panicum miliaceum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	0.77 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001976\|JGI24752J21851_1066811	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	501	Open in IMG/M
3300005331\|Ga0070670_100856496	Not Available	822	Open in IMG/M
3300005365\|Ga0070688_101208694	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	607	Open in IMG/M
3300005365\|Ga0070688_101666695	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	521	Open in IMG/M
3300005438\|Ga0070701_11311689	Not Available	517	Open in IMG/M
3300005441\|Ga0070700_101853332	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	520	Open in IMG/M
3300005445\|Ga0070708_101213436	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	705	Open in IMG/M
3300005468\|Ga0070707_102003636	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	546	Open in IMG/M
3300005468\|Ga0070707_102037005	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	541	Open in IMG/M
3300005618\|Ga0068864_100437656	Not Available	1248	Open in IMG/M
3300005841\|Ga0068863_100175696	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2055	Open in IMG/M
3300005843\|Ga0068860_102147655	Not Available	579	Open in IMG/M
3300005844\|Ga0068862_101314716	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	724	Open in IMG/M
3300009092\|Ga0105250_10108057	Not Available	1138	Open in IMG/M
3300009553\|Ga0105249_12085995	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	640	Open in IMG/M
3300009973\|Ga0105136_108898	Not Available	603	Open in IMG/M
3300009976\|Ga0105128_104251	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	817	Open in IMG/M
3300009976\|Ga0105128_108395	Not Available	677	Open in IMG/M
3300009977\|Ga0105141_115339	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	667	Open in IMG/M
3300009980\|Ga0105135_114666	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	643	Open in IMG/M
3300009981\|Ga0105133_125315	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	545	Open in IMG/M
3300009981\|Ga0105133_132123	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	503	Open in IMG/M
3300009981\|Ga0105133_132240	Not Available	502	Open in IMG/M
3300009984\|Ga0105029_103961	Not Available	1007	Open in IMG/M
3300009988\|Ga0105035_100607	Not Available	2220	Open in IMG/M
3300009990\|Ga0105132_142054	Not Available	517	Open in IMG/M
3300009992\|Ga0105120_1025150	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	679	Open in IMG/M
3300009994\|Ga0105126_1017466	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	754	Open in IMG/M
3300009995\|Ga0105139_1050623	Not Available	730	Open in IMG/M
3300010371\|Ga0134125_11507802	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	732	Open in IMG/M
3300010396\|Ga0134126_12034646	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	628	Open in IMG/M
3300010400\|Ga0134122_12782971	Not Available	542	Open in IMG/M
3300010403\|Ga0134123_10684316	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1000	Open in IMG/M
3300012949\|Ga0153798_10111820	Not Available	1215	Open in IMG/M
3300015270\|Ga0182183_1024140	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	766	Open in IMG/M
3300015290\|Ga0182105_1063846	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	607	Open in IMG/M
3300015297\|Ga0182104_1116098	Not Available	509	Open in IMG/M
3300015301\|Ga0182184_1044680	Not Available	664	Open in IMG/M
3300015306\|Ga0182180_1094007	Not Available	505	Open in IMG/M
3300015309\|Ga0182098_1000669	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2223	Open in IMG/M
3300015315\|Ga0182120_1030463	Not Available	872	Open in IMG/M
3300015317\|Ga0182136_1000022	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	7388	Open in IMG/M
3300015318\|Ga0182181_1001983	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1899	Open in IMG/M
3300015326\|Ga0182166_1143867	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	504	Open in IMG/M
3300015328\|Ga0182153_1003497	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1644	Open in IMG/M
3300015328\|Ga0182153_1088492	Not Available	623	Open in IMG/M
3300015329\|Ga0182135_1111990	Not Available	573	Open in IMG/M
3300015332\|Ga0182117_1000507	Not Available	2968	Open in IMG/M
3300015335\|Ga0182116_1110425	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	622	Open in IMG/M
3300015335\|Ga0182116_1167048	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	519	Open in IMG/M
3300015336\|Ga0182150_1097103	Not Available	625	Open in IMG/M
3300015337\|Ga0182151_1032677	Not Available	917	Open in IMG/M
3300015340\|Ga0182133_1117662	Not Available	622	Open in IMG/M
3300015348\|Ga0182115_1156631	Not Available	730	Open in IMG/M
3300015352\|Ga0182169_1290014	Not Available	529	Open in IMG/M
3300015352\|Ga0182169_1310260	Not Available	507	Open in IMG/M
3300015353\|Ga0182179_1066754	Not Available	1020	Open in IMG/M
3300015353\|Ga0182179_1202980	Not Available	631	Open in IMG/M
3300015353\|Ga0182179_1248164	Not Available	574	Open in IMG/M
3300015354\|Ga0182167_1016938	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	2085	Open in IMG/M
3300015354\|Ga0182167_1248160	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	642	Open in IMG/M
3300017412\|Ga0182199_1176968	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	533	Open in IMG/M
3300017414\|Ga0182195_1152042	Not Available	587	Open in IMG/M
3300017421\|Ga0182213_1165280	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	626	Open in IMG/M
3300017422\|Ga0182201_1126253	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	528	Open in IMG/M
3300017432\|Ga0182196_1019891	Not Available	1001	Open in IMG/M
3300017435\|Ga0182194_1014973	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1180	Open in IMG/M
3300017691\|Ga0182212_1100431	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	649	Open in IMG/M
3300017692\|Ga0182210_1122241	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	569	Open in IMG/M
3300017693\|Ga0182216_1217934	Not Available	508	Open in IMG/M
3300017693\|Ga0182216_1223457	Not Available	503	Open in IMG/M
3300017792\|Ga0163161_11161906	Not Available	666	Open in IMG/M
3300020023\|Ga0182178_1021044	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	519	Open in IMG/M
3300020223\|Ga0182118_100040	Not Available	3625	Open in IMG/M
3300020223\|Ga0182118_100091	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	2297	Open in IMG/M
3300022465\|Ga0213505_107258	Not Available	935	Open in IMG/M
3300022466\|Ga0213504_104444	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	582	Open in IMG/M
3300025735\|Ga0207713_1167769	Not Available	695	Open in IMG/M
3300026088\|Ga0207641_10226839	Not Available	1734	Open in IMG/M
3300026088\|Ga0207641_10355474	Not Available	1397	Open in IMG/M
3300026095\|Ga0207676_10127133	Not Available	2160	Open in IMG/M
3300028051\|Ga0268344_1000348	All Organisms → cellular organisms → Eukaryota	1947	Open in IMG/M
3300028056\|Ga0268330_1051996	Not Available	538	Open in IMG/M
3300028056\|Ga0268330_1062366	Not Available	503	Open in IMG/M
3300028058\|Ga0268332_1000847	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1911	Open in IMG/M
3300028064\|Ga0268340_1064614	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	561	Open in IMG/M
3300028143\|Ga0268348_1017634	Not Available	569	Open in IMG/M
3300028144\|Ga0268345_1000067	Not Available	3697	Open in IMG/M
3300028151\|Ga0268308_1017794	Not Available	619	Open in IMG/M
3300028251\|Ga0268324_1001262	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1194	Open in IMG/M
3300028251\|Ga0268324_1011210	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	652	Open in IMG/M
3300028253\|Ga0268316_1011302	Not Available	640	Open in IMG/M
3300028381\|Ga0268264_10714153	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	996	Open in IMG/M
3300028471\|Ga0268323_1020855	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	512	Open in IMG/M
3300028473\|Ga0268319_1019318	Not Available	541	Open in IMG/M
3300032465\|Ga0214493_1076694	Not Available	796	Open in IMG/M
3300032466\|Ga0214503_1218249	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	592	Open in IMG/M
3300032467\|Ga0214488_1141114	Not Available	501	Open in IMG/M
3300032468\|Ga0214482_1004722	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1980	Open in IMG/M
3300032468\|Ga0214482_1015155	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1353	Open in IMG/M
3300032468\|Ga0214482_1027433	Not Available	1067	Open in IMG/M
3300032490\|Ga0214495_1067467	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	834	Open in IMG/M
3300032514\|Ga0214502_1034996	Not Available	1754	Open in IMG/M
3300032548\|Ga0214483_1003013	Not Available	2068	Open in IMG/M
3300032551\|Ga0321339_1034640	Not Available	1121	Open in IMG/M
3300032591\|Ga0214484_1009067	Not Available	1727	Open in IMG/M
3300032625\|Ga0214501_1213516	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	613	Open in IMG/M
3300032689\|Ga0214497_1110525	Not Available	590	Open in IMG/M
3300032697\|Ga0214499_1238444	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	561	Open in IMG/M
3300032697\|Ga0214499_1264613	Not Available	529	Open in IMG/M
3300032699\|Ga0214494_1028211	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1054	Open in IMG/M
3300032760\|Ga0314754_1062751	Not Available	578	Open in IMG/M
3300032781\|Ga0314742_1001586	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2961	Open in IMG/M
3300032812\|Ga0314745_1056951	Not Available	840	Open in IMG/M
3300032823\|Ga0314723_1093667	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	561	Open in IMG/M
3300032824\|Ga0314735_1045704	Not Available	829	Open in IMG/M
3300032824\|Ga0314735_1062793	Not Available	702	Open in IMG/M
3300032824\|Ga0314735_1101458	Not Available	531	Open in IMG/M
3300032843\|Ga0314736_1037220	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	630	Open in IMG/M
3300032844\|Ga0314743_1144909	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	525	Open in IMG/M
3300032875\|Ga0314737_1019858	Not Available	1121	Open in IMG/M
3300032888\|Ga0314728_117824	Not Available	543	Open in IMG/M
3300032890\|Ga0314747_1003637	Not Available	1949	Open in IMG/M
3300032959\|Ga0314738_1024807	Not Available	1062	Open in IMG/M
3300032959\|Ga0314738_1034489	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	915	Open in IMG/M
3300032970\|Ga0314716_131480	Not Available	614	Open in IMG/M
3300032976\|Ga0314752_1040685	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	888	Open in IMG/M
3300033533\|Ga0314770_1068435	Not Available	1085	Open in IMG/M
3300033535\|Ga0314759_1004893	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	2749	Open in IMG/M
3300033537\|Ga0314766_1301239	Not Available	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	90.77%
Environmental	Environmental	8.46%
Engineered	Engineered	0.77%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	90.77%
Terrestrial	Environmental → Terrestrial	8.46%
Bioreactor	Engineered → Bioreactor	0.77%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	69.23%
Unclassified	Host-Associated → Plants → Unclassified	9.23%
Soil	Environmental → Terrestrial → Soil	8.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.62%
Unclassified	Engineered → Bioreactor → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	69.23%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	9.23%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Loam	Environmental → Terrestrial → Soil → Loam	5.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.77%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	69.23%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	9.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.77%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	59.23%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	10.00%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	9.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.08%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Degrading	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009973	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG	Host-Associated	Open in IMG/M
3300009976	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG	Host-Associated	Open in IMG/M
3300009977	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaG	Host-Associated	Open in IMG/M
3300009980	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG	Host-Associated	Open in IMG/M
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated	Open in IMG/M
3300009984	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG	Host-Associated	Open in IMG/M
3300009988	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG	Host-Associated	Open in IMG/M
3300009990	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaG	Host-Associated	Open in IMG/M
3300009992	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG	Host-Associated	Open in IMG/M
3300009994	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012949	Switchgrass enrichment cultures co-assembly	Engineered	Open in IMG/M
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015297	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015309	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015315	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015318	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015326	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015329	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017421	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017422	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017435	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017691	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017692	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020023	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MG	Host-Associated	Open in IMG/M
3300020223	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MG	Host-Associated	Open in IMG/M
3300022465	Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12JUL2016_LR1 MT pilot (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300022466	Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12SEP2016_LR1 MT pilot (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028051	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028056	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028058	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028064	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028143	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028144	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028151	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028251	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028253	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028471	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028473	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300032465	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032466	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032467	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032468	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032490	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032514	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032548	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032551	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032591	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032625	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032689	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032697	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032699	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032760	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032781	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032812	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032823	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032824	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032843	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032844	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032875	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032888	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032890	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032959	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032970	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_15MAY2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032976	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033533	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033535	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033537	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24752J21851_10668111	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MCMNGPLIIMAFDPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMC
Ga0070670_1008564962	3300005331	Switchgrass Rhizosphere	MCMNVLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCICENDQ
Ga0070688_1012086941	3300005365	Switchgrass Rhizosphere	MCTNGPLIIMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEV
Ga0070688_1016666951	3300005365	Switchgrass Rhizosphere	MCMNGLLVVMAFGPLFGLWPSSFFVLLRDHGPRHFMLQNWSKTCKNEVPPKYMCKCEND
Ga0070701_113116891	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MCMNGLRINMSFGPSFGLWPSSFSVLALDHVPRHFMLQNRPKTYKNEVPPKYMCKCENDQ
Ga0070700_1018533321	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MNVLRINMGFGPSFGLWPSSFSVLVLDHGPRHFMLQNRPKTCKNEVPPKYMC
Ga0070708_1012134361	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MCMNGPLIIMAFDPLFGLWPLSFFMSSRDRGPRHFMLQNWSKTCKNEVPPKYMCKRENDQ
Ga0070707_1020036361	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MCMNGPLIIMAFDPLFGLWPLSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCKREN
Ga0070707_1020370051	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MCMNGPLVFMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCK
Ga0068864_1004376563	3300005618	Switchgrass Rhizosphere	LGPLGSLGGWMCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMHQNRPKTCKNEVPPKYMCKCENDQ*
Ga0068863_1001756961	3300005841	Switchgrass Rhizosphere	NGLRINMGFGPPFGLWPSSFFVLALDHGPRHFMLQNRPKSCKNEVPPKYMCKCENDQ*
Ga0068860_1021476551	3300005843	Switchgrass Rhizosphere	MCMNGLRINMGFGPSFGFWPLSFSVLALDHGPRHFMLQNKPKTYKNEVPPKYMCICENDQ
Ga0068862_1013147161	3300005844	Switchgrass Rhizosphere	MNGLLVVMAFGPLFGLWPSSFFVLLRDHGPRHFMLQNWSKTCKNEVPPKYMCKCENDQ*
Ga0105250_101080571	3300009092	Switchgrass Rhizosphere	MCVNGLRINMGFGPSFGLWPSSFSVLALDHGPHHFVLQNRPKTCKNEVPPKYMCKCEN
Ga0105249_120859951	3300009553	Switchgrass Rhizosphere	MCMNGPLVFMAFGPLFGLWPSSFFVSSRDRGPHHFMLQNWSKTCKNEVP
Ga0105136_1088981	3300009973	Switchgrass Associated	MCMNGIRINMGSDPSFGLWPSSFSMLALDHGPRRFMLQNRLKTCKNEVPPKYMCKCENDQ
Ga0105128_1042511	3300009976	Switchgrass Associated	MNGLLVVMAFGPLFGLWPSSFFVLLHDHGPRHFMLQNWSKTYKNEVPPKYM
Ga0105128_1083951	3300009976	Switchgrass Associated	MCMNGLRINMGFGPSFGLWPSSFSVLVLDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0105141_1153391	3300009977	Switchgrass Associated	MNVLRINMGFGPSFGLWPSSFSVLALDYGPRHFMLQNRPKTCKNEVPPK
Ga0105135_1146661	3300009980	Switchgrass Associated	MNGLLVIMAFGPLFGLWPSSFFVLPRDHEPRHFMLQNWPKTCKNEVPPKYMCKCEN
Ga0105133_1253151	3300009981	Switchgrass Associated	MNGLLVIMAFGPLFGLWPSSFFVLPRDHGPRHFMLQNWPKTCKNEVPPK
Ga0105133_1321231	3300009981	Switchgrass Associated	MCMNVLRINMGFGPPFGLWPSSFSVLVLNHGPRHFMLQNRPKTCKNEVPPKYMCKC
Ga0105133_1322401	3300009981	Switchgrass Associated	MCMNGLRINMGFGPFFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMC
Ga0105029_1039611	3300009984	Switchgrass Rhizosphere	MCMIGLRINMGFGPSFGLWPSSFFVLALDHGPRHFMLQNRQKTCKNKVPPKYMCKRENDQ
Ga0105035_1006071	3300009988	Switchgrass Rhizosphere	LGGWMCMNVLRINMGLGPSFGLWPSSFPVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENG*
Ga0105132_1420542	3300009990	Switchgrass Associated	MCMNGLRINMGFGPFFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKYENDQKLGRG*
Ga0105120_10251501	3300009992	Switchgrass Associated	MCMNVLRINMGFGPPFGLWPSSFSVLVLNHGPRHFMLQNRPKTCKNKVPPKYMCKCENDQ
Ga0105126_10174661	3300009994	Switchgrass Associated	IIMAFDPLFGLWPSSFFVSSRDRESRHFMLQNWSKTCKNEVPPKYMCKRENDQ*
Ga0105139_10506231	3300009995	Switchgrass Associated	MNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFKLQNRPKTCKNEVPPKYMCKCENDQ*
Ga0134125_115078021	3300010371	Terrestrial Soil	MCMNGLLVIMAFGPLFGFWPSSFLVSSRDRGPGQFMLQNWSKTCKNEVPPKYMCKRENDQ
Ga0134126_120346461	3300010396	Terrestrial Soil	MCMNGLLVIMAFGPLFGLWPSSFFMLPRDHGPRHFMLQNWPKTCKNEVPP
Ga0134122_127829711	3300010400	Terrestrial Soil	MCMNGLRINMGFGPFFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYM
Ga0134123_106843161	3300010403	Terrestrial Soil	MCMNGLLVIMAFGPLFGLWPSSFFVLPRDHGPRHFMLQNWPKTYKNEVPPKYMCKCENDQ
Ga0153798_101118201	3300012949	Switchgrass Degrading	MCMNVLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKRENDQ
Ga0182183_10241401	3300015270	Switchgrass Phyllosphere	MCMNVLRINMGFGPPFGLWPSSFSVLVLNHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQYLVRG*
Ga0182105_10638461	3300015290	Switchgrass Phyllosphere	MCMNEPLVFMAFGPLCGLWPSSFFVSSRDHGPRHFMLQNWSKTYKNEVPP
Ga0182104_11160981	3300015297	Switchgrass Phyllosphere	MCMNGLRNNMGFGPSFGLWPLSFSVLVLDHGPRHFMLQNRPKTCKNEVPPKYMRKCENDQ
Ga0182184_10446801	3300015301	Switchgrass Phyllosphere	MCVNGLRINMGFGPPFGLWPSSFFVLALDHGPRHFMLQNRPKSCKNEVPPKY
Ga0182180_10940071	3300015306	Switchgrass Phyllosphere	GSIGGWMCMNGLRINMGFGPSFGFWPLSFSVLALDHGPRHFMLQNKPKTCKNEVPPKYMCKCENDQ*
Ga0182098_10006694	3300015309	Switchgrass Phyllosphere	MCMNGLRINMGFGPPFGLWPSSFFVLALDHGPRHFMLQNRPKSCKNEVPPKYMCKCENDQ
Ga0182120_10304631	3300015315	Switchgrass Phyllosphere	MNGLRINMGFGPSFGLWPSSISVLALDHGPHHFMLQNSPKTCKNEVPPKYM
Ga0182136_10000221	3300015317	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMHQNRPKTCKNEVPPKYMCKCENDQ
Ga0182181_10019834	3300015318	Switchgrass Phyllosphere	MCMNGLRINMGFGPPFGLWPSSFFVLALDHEPRHFMLQNRPKSCKNEVPPKYMCKCENDQ
Ga0182166_11438671	3300015326	Switchgrass Phyllosphere	MCMNGLLVIMAFGPLFGLWPSSFFVLSRDHGPRHFMLQNWSKTCKNEVPPKYMCK
Ga0182153_10034971	3300015328	Switchgrass Phyllosphere	GLGPLGSLGGWMCMNGLRINMGFGPPFGLWPSSFFVLALDHGSHHFMLLNRPKSCKNEVPPKYMCKCENDQ*
Ga0182153_10884921	3300015328	Switchgrass Phyllosphere	MCMNELRINMGFGPFFGLWPSSFSVLALDHGPRHFMLQNRPKTYKNEVPPKYMCKCENDQ
Ga0182135_11119901	3300015329	Switchgrass Phyllosphere	GLQINMGFGPSFGLWPSSFSVLALDHGPHHFMFQNRPKIYKNEVPPKYMCKCEND*
Ga0182117_10005074	3300015332	Switchgrass Phyllosphere	MCMNGFRMNMGFGPSFGLWPSSFSVLALDHGPRHFMHQNRPKTCKNEVPPKYMCKCENDQ
Ga0182116_11104251	3300015335	Switchgrass Phyllosphere	MCMNGPLVFMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKY
Ga0182116_11670481	3300015335	Switchgrass Phyllosphere	MCMNVLRINMGFGPPFGLWPSSFSVLVLNHGPRHFMLQNRPKTCKNEVPPKYMCKCEND
Ga0182150_10971031	3300015336	Switchgrass Phyllosphere	MCMNELRINIGFGPSFGLWPSSFSVLALDHGSRRFMLQNRSKTCKNEVPPKYMCKYENDQ
Ga0182151_10326771	3300015337	Switchgrass Phyllosphere	MCMNGLRINMGLGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYKCKCENDQ
Ga0182133_11176621	3300015340	Switchgrass Phyllosphere	MNGLQINMGFGPSFGLWPLSFSVLPLDYGLRHFMLQNRAKTCENEVPPKYMCKCENDQ*
Ga0182115_11566311	3300015348	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGIWPSSFSVLALDHGPHHFMLQNRPKTCKNEVP
Ga0182169_12900141	3300015352	Switchgrass Phyllosphere	MCMNGLLINMGFGPSFGLLPSSFSVLALDHGPRHLMLQNRPKTCKNKVPPKYMSKCENDQ
Ga0182169_13102601	3300015352	Switchgrass Phyllosphere	SHLCGLGPLGSLGGWMCMNGLRINMGFGPSFGLWPSSFSVFALDHGSRHFMLQNMPKTCEDEVPPKYMCKCENDQ*
Ga0182179_10667543	3300015353	Switchgrass Phyllosphere	MNGLRINMGFGPSFGLWPSSFSVLAFDYGPRHFMFQNRPKTCKNEVPPKYMCKCESDQ*
Ga0182179_12029801	3300015353	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFFVLAFDHGPHHFMLQNRPKTCKNEVPPKYM
Ga0182179_12481641	3300015353	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFFVLALDHGPHHFMLQNRQKTCKNEVPPKYMC
Ga0182167_10169382	3300015354	Switchgrass Phyllosphere	MCMNGLLVVMSFGPLFGLWPSYFSVLALDHGPRYFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0182167_12481602	3300015354	Switchgrass Phyllosphere	LRINMGFGHPFGLWPSSFFMLALDHGPHHFMLQNGQKTCKNEIPPKYMCKCENDQ*
Ga0182199_11769681	3300017412	Switchgrass Phyllosphere	MCMNRLLVIMAFGPLFGLWPSSFFVISRDHGPRHFMLHNWPKTCKNEVPPKYMCKCEND
Ga0182195_11520422	3300017414	Switchgrass Phyllosphere	HLRGLGPLGSLGGWMCMNVLRINMGFGPSFGLWPSSLSVLALDHGPRHFMLQNRPKTCRNEDPPKYMCKCENDQ
Ga0182213_11652801	3300017421	Switchgrass Phyllosphere	MYMNGLLVIIAFGPLFGLWPSSFFVLPRDHGPHHFMLQNWPKTCKNEVPPKYLCKCENDE
Ga0182201_11262531	3300017422	Switchgrass Phyllosphere	SHLHGLGPLGSLGGWMCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0182196_10198911	3300017432	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGFWPLSFSVLALDHGPHHFMLQNKPKTCKNEVPPKYMCICENDQ
Ga0182194_10149731	3300017435	Switchgrass Phyllosphere	SHLCGLGPLGSLGGWMCMNGLRINMGFGPPFGLWPSSFFMLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0182212_11004311	3300017691	Switchgrass Phyllosphere	MCMNGLLVIMAFGPLFGLWPLSFFVSSHDRGPCQFMLQNWSKTYKNEVPPKYMCKCENDQ
Ga0182210_11222411	3300017692	Switchgrass Phyllosphere	MCMNGLLVIMAFGPLFGLWPSSFFVSPRDHGPRHFMLQNWPKTWKNKVPPKYMCKCENDQ
Ga0182216_12179341	3300017693	Switchgrass Phyllosphere	MCMNGLRINMGFGLSFGLWPSSFSLLVLDHGPRRFMLQNRPKTCKNEVLPKYMC
Ga0182216_12234572	3300017693	Switchgrass Phyllosphere	HLCGLGPLGSLGGWMCMNGLRINMGFGPSFGLWPLSFFVLALDHGPHHFMFQNRPKICKNEVPPKYMCKYENDQ
Ga0163161_111619061	3300017792	Switchgrass Rhizosphere	MCVNGLRINMGFGPPFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCEN
Ga0182178_10210441	3300020023	Switchgrass Phyllosphere	MCMNVLRINMGFGPPFGLWPSSFSVLVLNHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0182118_1000402	3300020223	Switchgrass Phyllosphere	MCMNVLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0182118_1000912	3300020223	Switchgrass Phyllosphere	MCMNGPLIIMAFDPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCKRENDQ
Ga0213505_1072581	3300022465	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0213504_1044442	3300022466	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTYKNEVPPKYMCKCENDQ
Ga0207713_11677691	3300025735	Switchgrass Rhizosphere	MCVNGLRINMGFGPSFGFWPSSFSVLALDHVPRHFMLQNRPKTCKNEVPPKYMCICENDQ
Ga0207641_102268391	3300026088	Switchgrass Rhizosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCICENDQ
Ga0207641_103554741	3300026088	Switchgrass Rhizosphere	WMCMNGLRINMGFGPSFGLWASSFSVLALDHGPRYFMFQNWPKTYKNEVPPKYMCKCEND
Ga0207676_101271331	3300026095	Switchgrass Rhizosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNKV
Ga0268344_10003481	3300028051	Phyllosphere	MCMNGLQINMGFGPPFGLWPSSFFVLALDHEPRHFMLQNRPKSCKNEVPPKYMCKCENDQ
Ga0268330_10519962	3300028056	Phyllosphere	MNGLRINMGFGPSFGFWPLSFSVLALDHGPRHFMLQNRRKTCKNEVPPKYMW
Ga0268330_10623661	3300028056	Phyllosphere	MNGLRINMGFGPFFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCE
Ga0268332_10008471	3300028058	Phyllosphere	MNGRLIIMAFDPLFGLWPSSLFVSLRDRGPRHFMLQNWSKTCKNEVPPKYMCQRENDQ
Ga0268340_10646141	3300028064	Phyllosphere	MCMNGPLIIMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYLC
Ga0268348_10176341	3300028143	Phyllosphere	MCMNGLRINMGFGPFFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNKVPPKYMCKC
Ga0268345_10000672	3300028144	Phyllosphere	MCVNGLRINMGFGPSFGLWPSSFSVLVLDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0268308_10177941	3300028151	Phyllosphere	MCMNGLRINMGFGPPFGLWPSSFSVLVLDHGPRHFMLQNMPKTCKNEVPPKYMCKHENDQ
Ga0268324_10012622	3300028251	Phyllosphere	LGPLGSLGGWMCMNGLRINMGFGPPFGLWPSSFFVLALDHEPRHFMLQNRPKSCKNEVPPKYMCKCENDQ
Ga0268324_10112101	3300028251	Phyllosphere	MNGLLVILAFGPLFGLWPSSFFVLPHDHGPRHFMLQNRPKTCKNEVLQNICANVK
Ga0268316_10113021	3300028253	Phyllosphere	MCMNWLRINMGFGPPFGLWPSSFFVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0268264_107141532	3300028381	Switchgrass Rhizosphere	MCMNGPLIIMAFDPLFGLWPLSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCK
Ga0268323_10208551	3300028471	Phyllosphere	MCTNGPLIIMAFGPLFGLWPSSFFVSSCDRGPRHFMLQNWSKTYKNEVPPKYMC
Ga0268319_10193181	3300028473	Phyllosphere	MCMNGLRINMGFGPSFGLLPSSFSVLALDHGPRHLMLQNRPKTCKNKVPPKY
Ga0214493_10766942	3300032465	Switchgrass Phyllosphere	MNELQINMSFGPSFGLWPSSFSVLSLDHGPHHFMLQNRPKTCKNEVPLKYMCKCEN
Ga0214503_12182492	3300032466	Switchgrass Phyllosphere	MCMNGPPIIMAFDPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCKREN
Ga0214488_11411141	3300032467	Switchgrass Phyllosphere	MNGLRINLGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNKVPPKYMCK
Ga0214482_10047221	3300032468	Switchgrass Phyllosphere	SHLRGLGPLVSLGGCMCMNVLRMNMGFGPSFGLWPSFLSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0214482_10151552	3300032468	Switchgrass Phyllosphere	MCMNGLLVVMAFGPLFGLWPSSFFVLLRDHGPRHFMLQNWSKTCKNEVPPKYMCKCENDQ
Ga0214482_10274331	3300032468	Switchgrass Phyllosphere	MCVNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0214495_10674672	3300032490	Switchgrass Phyllosphere	MCMNGLLVVMAFGPLFGLWPSSFFVLLRDHGPRHFMLQNWSKTCKNEVPPKYMCKRENDQ
Ga0214502_10349963	3300032514	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPCHFMLQNRPKTCKNEVPPKYMCQCKNDQ
Ga0214483_10030132	3300032548	Switchgrass Phyllosphere	MCVNELRINMGFGPPFGLWSSSFSVLALDHEPRHFMLQNRPKTCKNEVPPKYMCICENDQ
Ga0321339_10346401	3300032551	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGSRHFMLQNRPKICKNEVPPKYMCICENDQ
Ga0214484_10090672	3300032591	Switchgrass Phyllosphere	MCMNGLRINLGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTYKNEVPPKYMCKCENDQ
Ga0214501_12135162	3300032625	Switchgrass Phyllosphere	MCTNGPLIIMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYM
Ga0214497_11105251	3300032689	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPLSFSVLVLDHGLCHFMLQNRPKTCKNEVPPKYMWKCENDQ
Ga0214499_12384441	3300032697	Switchgrass Phyllosphere	MCTNGPLIIMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCKREND
Ga0214499_12646131	3300032697	Switchgrass Phyllosphere	MAFGPLFGLWPSSFFVLLRDHGPRHFMLQNWSKTYKNEVPLKYMCKRENDQ
Ga0214494_10282111	3300032699	Switchgrass Phyllosphere	MCMNGLLVVMAFGPLFGLWPLSFFVLLRDHGPRHFMLQNWSKTCKNEVPPKYMCKCENDQ
Ga0314754_10627511	3300032760	Switchgrass Phyllosphere	MCMNWLRINMGFGPSFGFWPSSFSMLALDHGPRHFMLQNRLKPTKTKFLQNICANVK
Ga0314742_10015865	3300032781	Switchgrass Phyllosphere	MCMNGLRINLGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNKVPPKYMCKCENNQ
Ga0314745_10569512	3300032812	Switchgrass Phyllosphere	MCVNGLRINMGFGPPFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYM
Ga0314723_10936672	3300032823	Switchgrass Phyllosphere	MCMNGPLIIMAFDPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVPPKYMCK
Ga0314735_10457042	3300032824	Switchgrass Phyllosphere	SHLRGLGPLGSLGGWMCMNVLRINMGFGPSFGLWPSSFSVLVLDHGPRHFMLQNRPKTYKNEVPPKYMCKCQNDQ
Ga0314735_10627931	3300032824	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALNHGSRHFMLQNRPKTSKNEVSLKYMCKCEND
Ga0314735_11014581	3300032824	Switchgrass Phyllosphere	MNGLRINMGFGPSFGLWPSSFSVLALDHEPHHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0314736_10372201	3300032843	Switchgrass Phyllosphere	MNGILVVMAFGPLFGLWPSSFFVLLSDHGPRHFMLQNWSKTCKNEVPPKYMC
Ga0314743_11449091	3300032844	Switchgrass Phyllosphere	MCTNGPLIIMAFGPLFGLWPSSFFVSSRDRGPRHFMLQNWSKTCKNEVP
Ga0314737_10198582	3300032875	Switchgrass Phyllosphere	MCVNGLRINMGFGPPFGLWPSSFSVLALDHGPRHFMLKNRPKTCKNEVPPKYMCKCENDQ
Ga0314728_1178241	3300032888	Switchgrass Phyllosphere	MCMNGLRINMVLGPFFGLWPSSFSVLALDHGPRHFMLKNRPKTCKNEVPPKYMCKCENDQ
Ga0314747_10036372	3300032890	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPCHFMLQNRPKTCQNEVPPKYMCQCKNDQ
Ga0314738_10248071	3300032959	Switchgrass Phyllosphere	MNELQINMSFGPSFGLWPSSFSVLALDHGPHHFMLQNRPKTCKNEVPPKY
Ga0314738_10344892	3300032959	Switchgrass Phyllosphere	MCTNRPLIIMAFGPLFGLWPSSFFVSSRDLGPRHFMLQNWSKTCKNEVPPKYMCK
Ga0314716_1314801	3300032970	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQNICANVKMTNN
Ga0314752_10406851	3300032976	Switchgrass Phyllosphere	MCMNGLLVVMAFGPLFGLWPSSFFVLLRDHGPRHFMLQNWPKTYKNEVPPKYMCKCENDQ
Ga0314770_10684353	3300033533	Switchgrass Phyllosphere	MCMNGLRINMGFGPSFGLWPSSFSVLALDHRPRHFMLQNRPKTCKNEVPPKYMCKCENDQ
Ga0314759_10048931	3300033535	Switchgrass Phyllosphere	MCVNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTCKNEVPPKYMCKCENDQNICANVKMTNN
Ga0314766_13012391	3300033537	Switchgrass Phyllosphere	MNGLRINMGFGPSFGLWPLSFSVLALDHGPRHFMLQIRPKTCKNEVPPKYM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062397

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences