Metagenome Family F062561

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062561
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	68 residues
Representative Sequence	VHAVSRIWIDKHVSTKEKLVTTRTPKILAVKTCSDKAGQPSRGKVDAYVLGRIVIKDIYDNDNEQDARDITEHKKPE
Number of Associated Samples	88
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.54 %
% of genes near scaffold ends (potentially truncated)	39.23 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.923 % of family members)
Environment Ontology (ENVO)	Unclassified (47.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00873	ACR_tran	64.62
PF16576	HlyD_D23	9.23
PF00486	Trans_reg_C	2.31
PF02663	FmdE	1.54
PF12700	HlyD_2	0.77
PF08521	2CSK_N	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2191	Formylmethanofuran dehydrogenase subunit E	Energy production and conversion [C]	1.54
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.62 %
Unclassified	root	N/A	35.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.62 %
Unclassified	root	N/A	35.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.62 %
Unclassified	root	N/A	35.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.00 %
Unclassified	root	N/A	35.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.62 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.38 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.08 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	7.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.38 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.00 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	7.69 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.38 %
Gallionella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella	7.69 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.08 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.38 %
Candidatus Gallionella acididurans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	7.69 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.08 %
Candidatus Afipia apatlaquensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Candidatus Afipia apatlaquensis	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1024875	Not Available	873	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10046048	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10088770	Not Available	769	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10042571	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10071064	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10107868	Not Available	586	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1068833	Not Available	503	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1002990	Not Available	3490	Open in IMG/M
3300000956\|JGI10216J12902_104953563	All Organisms → cellular organisms → Bacteria → Proteobacteria	2002	Open in IMG/M
3300004633\|Ga0066395_10049428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1854	Open in IMG/M
3300004633\|Ga0066395_10592499	Not Available	649	Open in IMG/M
3300005467\|Ga0070706_100130971	All Organisms → cellular organisms → Bacteria	2340	Open in IMG/M
3300005536\|Ga0070697_100430800	Not Available	1147	Open in IMG/M
3300005713\|Ga0066905_100469973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1038	Open in IMG/M
3300005713\|Ga0066905_100592016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	937	Open in IMG/M
3300005713\|Ga0066905_100617653	Not Available	920	Open in IMG/M
3300005713\|Ga0066905_101563826	Not Available	602	Open in IMG/M
3300005713\|Ga0066905_102197792	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005764\|Ga0066903_100727647	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300005764\|Ga0066903_101802235	All Organisms → cellular organisms → Bacteria → Proteobacteria	1169	Open in IMG/M
3300005764\|Ga0066903_105217686	Not Available	687	Open in IMG/M
3300005764\|Ga0066903_106322843	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_108284378	Not Available	531	Open in IMG/M
3300005764\|Ga0066903_109147975	Not Available	500	Open in IMG/M
3300006804\|Ga0079221_10323174	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300007076\|Ga0075435_101517153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	588	Open in IMG/M
3300009147\|Ga0114129_12711796	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300009162\|Ga0075423_12980876	Not Available	519	Open in IMG/M
3300009792\|Ga0126374_10076709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1810	Open in IMG/M
3300009792\|Ga0126374_10088077	All Organisms → cellular organisms → Bacteria	1722	Open in IMG/M
3300010043\|Ga0126380_11247893	Not Available	644	Open in IMG/M
3300010043\|Ga0126380_11542745	Not Available	590	Open in IMG/M
3300010046\|Ga0126384_10420000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1134	Open in IMG/M
3300010046\|Ga0126384_10555611	Not Available	998	Open in IMG/M
3300010046\|Ga0126384_11204282	Not Available	699	Open in IMG/M
3300010047\|Ga0126382_10698215	Not Available	851	Open in IMG/M
3300010358\|Ga0126370_10471617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1052	Open in IMG/M
3300010359\|Ga0126376_10292463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1412	Open in IMG/M
3300010359\|Ga0126376_10392582	Not Available	1247	Open in IMG/M
3300010359\|Ga0126376_10508591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1117	Open in IMG/M
3300010360\|Ga0126372_10271624	Not Available	1470	Open in IMG/M
3300010360\|Ga0126372_11202472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	782	Open in IMG/M
3300010360\|Ga0126372_11252604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	768	Open in IMG/M
3300010361\|Ga0126378_12622295	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300010362\|Ga0126377_13202493	Not Available	529	Open in IMG/M
3300010366\|Ga0126379_10412146	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300010366\|Ga0126379_12805070	Not Available	583	Open in IMG/M
3300010376\|Ga0126381_101535188	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300010398\|Ga0126383_10604782	Not Available	1168	Open in IMG/M
3300010398\|Ga0126383_11126645	Not Available	874	Open in IMG/M
3300010398\|Ga0126383_11765976	Not Available	707	Open in IMG/M
3300010863\|Ga0124850_1009255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3121	Open in IMG/M
3300012205\|Ga0137362_10276584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Candidatus Afipia apatlaquensis	1452	Open in IMG/M
3300012209\|Ga0137379_10621582	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300012210\|Ga0137378_11468663	Not Available	594	Open in IMG/M
3300012211\|Ga0137377_11532414	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300012359\|Ga0137385_11561799	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012948\|Ga0126375_11020213	Not Available	675	Open in IMG/M
3300012948\|Ga0126375_11041768	Not Available	669	Open in IMG/M
3300012948\|Ga0126375_11578381	Not Available	564	Open in IMG/M
3300012971\|Ga0126369_10929933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	956	Open in IMG/M
3300012971\|Ga0126369_11117016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	877	Open in IMG/M
3300012971\|Ga0126369_11989303	Not Available	669	Open in IMG/M
3300012971\|Ga0126369_12712920	Not Available	579	Open in IMG/M
3300016270\|Ga0182036_10674560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	834	Open in IMG/M
3300016270\|Ga0182036_10684191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	829	Open in IMG/M
3300016357\|Ga0182032_10841960	Not Available	777	Open in IMG/M
3300016387\|Ga0182040_10946674	Not Available	716	Open in IMG/M
3300016404\|Ga0182037_10634744	All Organisms → cellular organisms → Bacteria → Proteobacteria	909	Open in IMG/M
3300016404\|Ga0182037_12160745	Not Available	501	Open in IMG/M
3300021560\|Ga0126371_10439942	Not Available	1449	Open in IMG/M
3300021560\|Ga0126371_10973650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	991	Open in IMG/M
3300025910\|Ga0207684_10024016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5202	Open in IMG/M
3300027654\|Ga0209799_1003602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3135	Open in IMG/M
3300031543\|Ga0318516_10056439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2149	Open in IMG/M
3300031543\|Ga0318516_10180592	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300031545\|Ga0318541_10069911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1838	Open in IMG/M
3300031545\|Ga0318541_10107234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	1505	Open in IMG/M
3300031545\|Ga0318541_10225364	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300031546\|Ga0318538_10040326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2237	Open in IMG/M
3300031561\|Ga0318528_10040022	All Organisms → cellular organisms → Bacteria	2340	Open in IMG/M
3300031573\|Ga0310915_10149960	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300031679\|Ga0318561_10099070	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300031680\|Ga0318574_10289247	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300031682\|Ga0318560_10037615	All Organisms → cellular organisms → Bacteria	2327	Open in IMG/M
3300031682\|Ga0318560_10404787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	738	Open in IMG/M
3300031713\|Ga0318496_10146078	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300031723\|Ga0318493_10513005	Not Available	663	Open in IMG/M
3300031724\|Ga0318500_10255392	Not Available	851	Open in IMG/M
3300031736\|Ga0318501_10047298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1994	Open in IMG/M
3300031736\|Ga0318501_10057768	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300031744\|Ga0306918_10123316	All Organisms → cellular organisms → Bacteria → Proteobacteria	1880	Open in IMG/M
3300031747\|Ga0318502_10126648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1439	Open in IMG/M
3300031748\|Ga0318492_10353295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	769	Open in IMG/M
3300031751\|Ga0318494_10430926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	766	Open in IMG/M
3300031763\|Ga0318537_10027660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2004	Open in IMG/M
3300031764\|Ga0318535_10465650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	562	Open in IMG/M
3300031765\|Ga0318554_10012264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4304	Open in IMG/M
3300031765\|Ga0318554_10144710	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300031768\|Ga0318509_10205001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1097	Open in IMG/M
3300031768\|Ga0318509_10330381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	853	Open in IMG/M
3300031769\|Ga0318526_10339039	Not Available	615	Open in IMG/M
3300031782\|Ga0318552_10279200	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300031795\|Ga0318557_10059975	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300031798\|Ga0318523_10174382	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
3300031819\|Ga0318568_10243144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1114	Open in IMG/M
3300031821\|Ga0318567_10017424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3419	Open in IMG/M
3300031821\|Ga0318567_10429147	Not Available	749	Open in IMG/M
3300031832\|Ga0318499_10007689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3372	Open in IMG/M
3300031835\|Ga0318517_10075801	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300031846\|Ga0318512_10167654	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300031859\|Ga0318527_10118037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1099	Open in IMG/M
3300031879\|Ga0306919_10164483	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300031890\|Ga0306925_12018839	Not Available	543	Open in IMG/M
3300031893\|Ga0318536_10072072	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300031894\|Ga0318522_10020981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2121	Open in IMG/M
3300031897\|Ga0318520_10598115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Gallionella → Candidatus Gallionella acididurans	685	Open in IMG/M
3300031910\|Ga0306923_11208870	Not Available	807	Open in IMG/M
3300031910\|Ga0306923_11338694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	757	Open in IMG/M
3300031912\|Ga0306921_10404842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1592	Open in IMG/M
3300031942\|Ga0310916_11054994	Not Available	676	Open in IMG/M
3300031945\|Ga0310913_10434868	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300031945\|Ga0310913_10845653	Not Available	644	Open in IMG/M
3300032001\|Ga0306922_11309553	Not Available	732	Open in IMG/M
3300032025\|Ga0318507_10094405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1241	Open in IMG/M
3300032035\|Ga0310911_10426694	Not Available	767	Open in IMG/M
3300032042\|Ga0318545_10119123	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300032063\|Ga0318504_10155896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300032066\|Ga0318514_10264638	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300032076\|Ga0306924_11073413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	879	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.69%
Host-Associated	Host-Associated	2.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.69%
Plants	Host-Associated → Plants	2.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.31%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.85%
Loam	Environmental → Terrestrial → Soil → Loam	13.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.31%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10248752	3300000579	Forest Soil	MWVDKHEATKEKPATTRALKILAVKTCPGEAGQPGCGKVHAYVLGHIVFKDIYDNDNEQDSRNITEHKKPK*
AF_2010_repII_A1DRAFT_100460482	3300000597	Forest Soil	MTTRTPKILAVKTCSDKAGQPSRGKIDAYAFGRIVIKDIYDNDNEQDARDITEHKKPE*
AF_2010_repII_A1DRAFT_100887701	3300000597	Forest Soil	VHAVLGIWVDNYVSTKEKLVTTWAPKILAVKTCSDKAGQPSRGKVDAYVFGRTVIKDIYDNDNE*
AF_2010_repII_A001DRAFT_100425712	3300000793	Forest Soil	MTTRTPKILAVKTCSDKAGQPSRGKIDAYAFGRIVIKDIYDNDNEQDARDITEYKKPE*
AF_2010_repII_A001DRAFT_100710642	3300000793	Forest Soil	MWVGKHEATKEKLVTPRAPKILTIKTCPGEAGQPGCGKVHAYVLGQIVVKDVYDDDNEQDSRDITEHKKPK*
AF_2010_repII_A001DRAFT_101078681	3300000793	Forest Soil	VHAVLGIWVDNYVSTKEKLVTTWAPKILAVKTCSDKAGQPSRGKVDAYVFGRTVIKDI
AP72_2010_repI_A100DRAFT_10688332	3300000837	Forest Soil	MWVGKHEATKEKLATPRAPKILTIKTCPGEAGQPGSGKVHAYVLGHIVFKDIYDDDNEQDSRDITEHKKPK*
AP72_2010_repI_A001DRAFT_10029901	3300000893	Forest Soil	MTTRTPKILAVKTCSDKAGQPSRGKIDAYAFGRIVIKDIYDNDNEQDARDITEHKK
JGI10216J12902_1049535631	3300000956	Soil	VHAVSRIWIDKHVSTKEKLVTTRTPKILAVKTCSDKAGQPSRGKVDAYVLGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0066395_100494282	3300004633	Tropical Forest Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVFKGIYDNDNEQDARDITEHKKPE*
Ga0066395_105924991	3300004633	Tropical Forest Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDKDNEQDARDITEHKKPE*
Ga0070706_1001309713	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MWVDKHKATKEKPVTTRALKILAVKACCDKTNQPGSRKVDAYVLGHIAFKDICDNDDEQDSRDITEHKKPK*
Ga0070697_1004308001	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MWVDMHKATKEKPVTTRALKILAVKACCDKTNQPGSRKVDAYVLGHIAFKDICDNDDEQDSRDITEHKKPK*
Ga0066905_1004699732	3300005713	Tropical Forest Soil	VHAVSRIWVDEHVPTKEKLVTARTPKILAVKTCPGKTGQPSRGKVDAYVLGRVVVKDVYDNDNE*
Ga0066905_1005920162	3300005713	Tropical Forest Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHKKPE*
Ga0066905_1006176532	3300005713	Tropical Forest Soil	VHAVSRIGVDEQVSTKEKLVATGTPKILAVKTCSDEAGQPSRGKVDAYVRGRIVIKDIYNNDNEQDDRDIAEHKKPE*
Ga0066905_1015638262	3300005713	Tropical Forest Soil	VHAVLGIWVDNHVSAKEKLVTTRTPKILAVKTCSDKAGQPSRGKVDAYVFGRIVIKDIYDNDNE*
Ga0066905_1021977922	3300005713	Tropical Forest Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDAWDITEHKKPE*
Ga0066903_1007276472	3300005764	Tropical Forest Soil	VHAVLGIWVDNHVSTKEKLVTTRTSKILAAKTCSDKAGQPSRGKVDTYVFGRVVIKDIYDNDNE*
Ga0066903_1018022352	3300005764	Tropical Forest Soil	VHAVSRIWVDKHVSTKEKLVTARTTKILAVKACSDKAGQPSRRKVDAYVLGHIVFKDIYDNDNEQDSRDITEHKKPK*
Ga0066903_1052176861	3300005764	Tropical Forest Soil	VHAVSRIWVDKHVSTEEKPAAARTPKILAVKTCSDKAGQPSRGKVDAYVLGRVVFKDIYDNDNEQDARDITEHKKPE*
Ga0066903_1063228432	3300005764	Tropical Forest Soil	RTPKILAVKTCPGKAGQPGSGKVDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0066903_1082843781	3300005764	Tropical Forest Soil	VHAVSRIWVDKHVSTKEQLVTARTPKILAVKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDIT
Ga0066903_1091479751	3300005764	Tropical Forest Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFRRVVFKDIYDNYDEQHAWDITEHKKPE*
Ga0079221_103231741	3300006804	Agricultural Soil	MVTTRTPKILAVKTCSDKAGQPSRGKVDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0075435_1015171532	3300007076	Populus Rhizosphere	VGIWFDEPKSAKEKAATTRTPKILAVKTCSDKAGQPSRGKVDAYVFGRIVFKDIYDNDNEQDARDITEHKKPE*
Ga0114129_127117962	3300009147	Populus Rhizosphere	VHAASRIWVDNHVSTKEKLVTARTPKILAVKTCSDKAGQPSHGKVDAYMFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0075423_129808762	3300009162	Populus Rhizosphere	VHAVSRIWVDKHVSTKEKPVTARTPEILAVKTCSDKAGQPSRGKVDAYVFGRIVFKDIYDND
Ga0126374_100767092	3300009792	Tropical Forest Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDAWDITEHKKPE*
Ga0126374_100880772	3300009792	Tropical Forest Soil	LDKPEATKEKIMTTWTPKILAVKTCSDKAGQPSRGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0126380_112478932	3300010043	Tropical Forest Soil	MTTRTPKILAVKTCSDKAGQPSRGKIDAYVFGRIVIKDIYDNDNEQDARDITEQRKPE*
Ga0126380_115427451	3300010043	Tropical Forest Soil	LDKPEATKEKIMTTWTPKILAVKTCSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0126384_104200002	3300010046	Tropical Forest Soil	MTTRTPKILAVKTCSDKAGQPSRGKIDAYVFGRIVIKDIYDNDNEQDARDITEQKKPE*
Ga0126384_105556112	3300010046	Tropical Forest Soil	VTTRTPKILAVKTCPDKAGQPSRGKVDAYVFGRIVVKDIYDNDNEQDTRDITEHKKPE*
Ga0126384_112042821	3300010046	Tropical Forest Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQNARDITEHKKPE*
Ga0126382_106982151	3300010047	Tropical Forest Soil	MWVGKYEATEEKPATTRALKILAVKTCCDKTSQPGSGKVDAYVLGHIVFKDIYDNDNEQDSRNITEHKKPK*
Ga0126370_104716172	3300010358	Tropical Forest Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVAFKDIYDNDNEQDARDITEHKRPE*
Ga0126376_102924631	3300010359	Tropical Forest Soil	TKEKITTTRTPKILAVKTCPGKAGQPGSGKVDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0126376_103925822	3300010359	Tropical Forest Soil	VHAVSRIWIDNHVPTKEKLVTTRSTKILPVKTRPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDAWDITEHKKPE*
Ga0126376_105085912	3300010359	Tropical Forest Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVIKGIYDNDNEQDARDITEDKKPE*
Ga0126372_102716244	3300010360	Tropical Forest Soil	MWVGKHEATKEKLVTPRAPKILTIKTCSGEADQPGCGKVHAYVLGQIVFKDVYDDDNEQDSRDITEHKKPK*
Ga0126372_112024722	3300010360	Tropical Forest Soil	VHAVLGIWVDNHVSTKEKLVTTRTSKILAAKTCSDKAGQPSRGKVDTYVFGRVVIKDIYDNDNDNE*
Ga0126372_112526042	3300010360	Tropical Forest Soil	VHAVSRIWVDKHVSTKEKLVTARTTKILAVKACPDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHKRPE*
Ga0126378_126222952	3300010361	Tropical Forest Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHKKPE*
Ga0126377_132024931	3300010362	Tropical Forest Soil	DEPKSTKEKAATTRTPKILAVKTCSDKAGQPSRGKVDAYVFGRIVVKDIYDNDNEQDTRDITEHKKPE*
Ga0126379_104121461	3300010366	Tropical Forest Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDKDDEQDARDITEHKKPE*
Ga0126379_128050701	3300010366	Tropical Forest Soil	VHAVSRIWVDKHESTEEKPAAARTPKILAVKTCSDKAGQPSRGKVDAYVLGRVVFKDIYDNDNEQDARDITEHKKPE*
Ga0126381_1015351882	3300010376	Tropical Forest Soil	KARSDKAGQPSRGKVDAYVFGRVVFKDIYDNENEQDARDITEHKRPE*
Ga0126383_106047821	3300010398	Tropical Forest Soil	DKPKATKEKIMTTRTPKILAVKTCSDKAGQPSRGKIDAYAFGRIVIKDIYDNDNEQDARDITEHKKPE*
Ga0126383_111266452	3300010398	Tropical Forest Soil	LGIWVDNHVSTKEKLVTTRTSKILAAKTCSDKAGQPSRGKVDTYVFGRVVIKDIYDNDNE
Ga0126383_117659762	3300010398	Tropical Forest Soil	ATKEKIMTTRTPKILAVKTCSDKAGQPSRGKIDAYVFGRIVIKDIYDNDNEQDARDITEQRKPE*
Ga0124850_10092552	3300010863	Tropical Forest Soil	VATRTPKILAVKTCPDKAGQPSRGKVDAYVFGRIVIKEIYDNDNEQDARDITEHKKPE*
Ga0137362_102765843	3300012205	Vadose Zone Soil	VHAVSRIWVDKHVSTKEKLLTARTPKILAVKTCSDKAGQPSRGKVDAYVFGRIVFKDIYDNDNEQDARDITEHKKPE*
Ga0137379_106215821	3300012209	Vadose Zone Soil	VHAASRIWVDKHVSTKEKLVTTRTPKILAVKTCSDKACQPSRGKVDAYVLGRIVIKDIYDNDNEQDAWDITEHKKPE*
Ga0137378_114686632	3300012210	Vadose Zone Soil	MVTTRTPKVLAVKTCPDKAGQPGSGKVDAYMFERIVIKEIYDNDNEQDARDITEHKKPE*
Ga0137377_115324141	3300012211	Vadose Zone Soil	VVTTRTPEILAVKTCSDKAGQPGSGKVGAYVLGHIAIKDIYNNNNEQDARDITEHKKPE*
Ga0137385_115617992	3300012359	Vadose Zone Soil	VVTTRTPEILAVKTCSDKAGQPGSGKVDAYVLGRIVIKDIYDNDNEQDAWDITEHKKPE*
Ga0126375_110202132	3300012948	Tropical Forest Soil	MWVGKYEATEEKPATTRALKILAVKTCCDKTSQPGSGKVDAYVLGHIVFKDIDDNDNEQDSRDIAEHKKPK*
Ga0126375_110417681	3300012948	Tropical Forest Soil	IAVHAVSRIWVDKHVSTKEKPMTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVFKGIYDNDNEQDARDITEDKKPE*
Ga0126375_115783811	3300012948	Tropical Forest Soil	LDKPEATKEKIMTTWTPKILAVKTCSDKAGQPSRGKIDAYVFGRIVIKDIYDNDNEQDARDITEQKKPE*
Ga0126369_109299331	3300012971	Tropical Forest Soil	KTCSDKAGQPSRGKVDTYVFGRVVIKDIYDNDNEQDARDITEHKKPE*
Ga0126369_111170162	3300012971	Tropical Forest Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFRRVVFKDIYDNYDEQHAWDITEHKKPE*
Ga0126369_119893032	3300012971	Tropical Forest Soil	MWVGKHEATKEKLVTPRAPKILTIKTCPGEAGQPGCGKVHAYVLGQIVFKDVYDDDNEQDSRDITEHKKPK*
Ga0126369_127129202	3300012971	Tropical Forest Soil	LGIWVDNHVSTKEKLVTTRTSKILAAKTCSDKAGQPSRGKVDTYVFGRVVIKDI
Ga0182036_106745602	3300016270	Soil	LDKPEATKEKLVTPRTPKILAVKTNSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKRPE
Ga0182036_106841911	3300016270	Soil	IAVHAVSRIWVDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHEKPK
Ga0182032_108419602	3300016357	Soil	VSRIWIDNHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0182040_109466741	3300016387	Soil	RLWVDKHETTKEMLVTPRAPKILTIKTCRGEAGQPGSGKVHAYVLRHIVFKDIYDDDDEQDARDVTEHKKPEQKLAAAKIAPTSQIVWISPHGALG
Ga0182037_106347441	3300016404	Soil	HVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0182037_121607452	3300016404	Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHEKP
Ga0126371_104399421	3300021560	Tropical Forest Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDKDNEQDARDITEHKKPE
Ga0126371_109736501	3300021560	Tropical Forest Soil	DNHVSTKEKLATTRTPKILAVKTCSDKAGQPSRGKVDTYVFGRVVIKDIYDNDNEQDARDITEHKKPE
Ga0207684_100240163	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MWVDKHKATKEKPVTTRALKILAVKACCDKTNQPGSRKVDAYVLGHIAFKDICDNDDEQDSRDITEHKKPK
Ga0209799_10036022	3300027654	Tropical Forest Soil	MTARTSKILVVKACSDKAGQPSRGKVDAYVFGRVVFKGIYDNDNEQDARDITEHKKPE
Ga0318516_100564392	3300031543	Soil	VHAVSRIWVDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHEKPK
Ga0318516_101805921	3300031543	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318541_100699112	3300031545	Soil	MTAWTLKILAVKACSDKAGQPSRGKVDAYVFGRVVFKDVYDNDDEQDARDITEHKKPE
Ga0318541_101072342	3300031545	Soil	LDKPEATKEKLVTPRTPKILAVKTNSDKAGQPSCGKIDAYVFGRIMIKDIYDNDNEQDARDITEHKKPE
Ga0318541_102253641	3300031545	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILPVKACSGKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDAWDITEHKKPE
Ga0318538_100403262	3300031546	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318528_100400222	3300031561	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKHIYDNYDEQDARDITEHKKPE
Ga0310915_101499601	3300031573	Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE
Ga0318561_100990701	3300031679	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYD
Ga0318574_102892472	3300031680	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDARDITEHKKPE
Ga0318560_100376151	3300031682	Soil	VHAVSRIWIDKHVPTKEKLVTARTPKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDAWDITEHKKPEQKLAAAKIAPTSQIVW
Ga0318560_104047872	3300031682	Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSRGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE
Ga0318496_101460782	3300031713	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQ
Ga0318493_105130051	3300031723	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILAVKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318500_102553922	3300031724	Soil	PRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE
Ga0318501_100472982	3300031736	Soil	VHAVSRIWIDKHVPTKEKLVTARTPKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHEKPK
Ga0318501_100577682	3300031736	Soil	LDKPEATKEKLVTPRTPKILAVKTNSDKAGQPSCGKIDAYVFGRIMIKDIYDNDNEQDARDIT
Ga0306918_101233162	3300031744	Soil	VTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318502_101266482	3300031747	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKHIYNSDNEQDARDITEHKKPE
Ga0318492_103532952	3300031748	Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIMIKDIYDNDNEQDARDITEHKKPE
Ga0318494_104309261	3300031751	Soil	LDKPEATKEKLVTPRTPKILAVKTNSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPE
Ga0318537_100276602	3300031763	Soil	VHAVSRIWIDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHEKPK
Ga0318535_104656501	3300031764	Soil	VHAVSRIWVDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDND
Ga0318554_100122641	3300031765	Soil	QIAVHAVSRIWVDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDNEQDARDITEHEKPK
Ga0318554_101447102	3300031765	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYD
Ga0318509_102050011	3300031768	Soil	KPMTAWTLKILAVKACSDKAGQPSRGKVDAYVFGRVVFKDVYDNDDEQDARDITEHKKPE
Ga0318509_103303811	3300031768	Soil	KILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318526_103390392	3300031769	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDI
Ga0318552_102792001	3300031782	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYD
Ga0318557_100599752	3300031795	Soil	VHAVSRIWVDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDN
Ga0318523_101743821	3300031798	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318568_102431442	3300031819	Soil	VSRIWIDNHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKHIYNSDNEQDARDITEHKKPE
Ga0318567_100174242	3300031821	Soil	VHAVSRIWVDKHVSTKEKPVAARTPKILAIKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDAWDITEHKKPE
Ga0318567_104291471	3300031821	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDARDI
Ga0318499_100076892	3300031832	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDARDITEHEKPK
Ga0318517_100758011	3300031835	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEH
Ga0318512_101676542	3300031846	Soil	VTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHKKPDFR
Ga0318527_101180372	3300031859	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDAWDITEHKKPE
Ga0306919_101644831	3300031879	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKHIYNSDNEQDARDITEHKKPE
Ga0306925_120188392	3300031890	Soil	VHAVSRIWIDKHVPTKEKLVTAWTPKILPVKACSDKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDAWDITEHKKPE
Ga0318536_100720721	3300031893	Soil	VHAVSRIWIDKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDND
Ga0318522_100209812	3300031894	Soil	VHAVSRIWIDKHVPTKEKLVTARTPKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0318520_105981152	3300031897	Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDI
Ga0306923_112088701	3300031910	Soil	MLVTPRAPKILTIKTCSGEASQPGFGKVHAYVLGQIVFKDIYDNDNEQDARDITEHKKPE
Ga0306923_113386942	3300031910	Soil	ILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDSDNEQDARDITEHKKPE
Ga0306921_104048422	3300031912	Soil	MTARTSKILVVKACSDEAGQPSRGKVDAYVFGRVVFKGIYDNDNEQDARDITEHKKPE
Ga0310916_110549941	3300031942	Soil	IAVHAVSRIWIDNHVPTKEKLVTTRTTKILPVKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDSDNEQDARDITEHKKPE
Ga0310913_104348681	3300031945	Soil	TKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKHIYNSDNEQDARDITEHKKPE
Ga0310913_108456531	3300031945	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILPVKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDARDITEHKKPE
Ga0306922_113095531	3300032001	Soil	HVSTKEKPMTAWTLKILAVKACSDKAGQPSRGKVDAYVFGRVVFKDVYDNDDEQDARDITEHKKPE
Ga0318507_100944053	3300032025	Soil	IDNHVPTKEKLVTTRTTRILPVKTCSDKAGQPSRGKVDAYVFGRVVFKDIYDSDNEQDARDITEHKKPE
Ga0310911_104266941	3300032035	Soil	VHAVSRIWIDNHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNDDEQDAWDITEHKKPE
Ga0318545_101191232	3300032042	Soil	LDKPEATKEKLVTPRTPKILAVKTSSDKAGQPSCGKIDAYVFGRIVIKDIYDNDNEQDARDITEHK
Ga0318504_101558961	3300032063	Soil	HVPTKEKLVTTRTTKILAVKTCPGKAGQPSRGKVDAYVFGRVVFKHIYNSDNEQDARDITEHKKPE
Ga0318514_102646381	3300032066	Soil	VHAVSRIWIHKHVPTKEKLVTTRTTKILPVKTCPGKAGQPSRGKVDAYVFGRVVFKDIYDNYDEQDARDITEHKKPE
Ga0306924_110734133	3300032076	Soil	VTVHAVAGIWFDKPKSTKERAAATRTPKILAVKACSDEAGQPGSGKVDAYMFERIVIKEIYDNENEQDARDITEHKKPE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F062561

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences