Metagenome / Metatranscriptome Family F062616

Basic Information
Family ID	F062616
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	49 residues
Representative Sequence	TGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Number of Associated Samples	80
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.77 %
% of genes from short scaffolds (< 2000 bps)	0.77 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.231 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (50.000 % of family members)
Environment Ontology (ENVO)	Unclassified (87.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (89.231 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 5.41% β-sheet: 0.00% Coil/Unstructured: 94.59%
Feature Viewer

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF02790	COX2_TM	3.08
PF01391	Collagen	2.31
PF00200	Disintegrin	0.77
PF13414	TPR_11	0.77
PF12697	Abhydrolase_6	0.77
PF00510	COX3	0.77
PF13432	TPR_16	0.77
PF00882	Zn_dep_PLPC	0.77
PF08409	TMTC_DUF1736	0.77
PF10114	PocR	0.77
PF00589	Phage_integrase	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	3.08
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	0.77

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
All Organisms	root	All Organisms	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
cellular organisms	root	All Organisms → cellular organisms	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.77 %

Visualization

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Scaffold	Taxonomy	Length	IMG/M Link
3300009012\|Ga0066710_103516831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.23%
Host-Associated	Host-Associated	0.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.23%
Plants	Host-Associated → Plants	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	96.92%
Loam	Environmental → Terrestrial → Soil → Loam	2.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	60.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	50.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	27.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066680_103513881	3300005174	Soil	ALPAKLVSIFCIPGTFNTLVDSAANIPGPGAVALQGTAQNLP*
Ga0066688_102892603	3300005178	Soil	LARTIVETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066688_104017472	3300005178	Soil	ETGSPAGALTTGGAALPAKLVSIFCIPGTFNSLVDSAANLPGPGAVALQGTAQNLP*
Ga0066684_102722681	3300005179	Soil	ALTVGGAPAPSTLVSIFCIPLTFSSLVDTAADLPGPGAVAIAGTAQALP*
Ga0066685_103781281	3300005180	Soil	AGAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAMNGQAQGLP*
Ga0066678_104409931	3300005181	Soil	GDPTSAVNPCSDLARTIVETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066676_105511441	3300005186	Soil	GAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAITGTAQALP*
Ga0066675_102160662	3300005187	Soil	SGAAAGAMTTGGPAKPAKLASIFCIPLTFSSLVDTAADLPGPGAVALSGTAQNLP*
Ga0066675_105579711	3300005187	Soil	ARTIVETGAVSGALTTGGAAKPGKLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP*
Ga0066675_107116862	3300005187	Soil	TGGAALPAKLVSIFCIPGTFNSLVDSAANIPGPGAVALQGTAQNLP*
Ga0066686_100850393	3300005446	Soil	ALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVAITGVTQALP*
Ga0066689_103151521	3300005447	Soil	ALTTGGAAKPATLVSIFCIPPSFNALVDSAADLPGPGAVSIPGVTQALP*
Ga0066681_103403793	3300005451	Soil	AKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066681_105904032	3300005451	Soil	GAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALQGSAQNLP*
Ga0070697_1011236062	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VPAAHGGAFCGIGSPANPCDDVTRTITVTGSPAGALTTGGAAKPATLASIFCIPPSFNSLVDSAADLPGPGAVSLPGVTQALP*
Ga0066697_105337071	3300005540	Soil	SIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP*
Ga0066697_106983312	3300005540	Soil	IFCIPLTFSSLVDSAADLPGPGAVAITGVTQALP*
Ga0066661_103714962	3300005554	Soil	TLVSIFCIPPSFNALVDSAADLPGPGAVSIPGVTQALP*
Ga0066661_108855261	3300005554	Soil	IARTISASGAAAGALTTGGAPKPQTLVSIFCIPPSFNPLVDAAADLPGPGAVSLPVNSQLLP*
Ga0066692_102371282	3300005555	Soil	GGAAKPAKLVSIFCIPGTFNSLVDSAANIPGPGAVALQGTAQNLP*
Ga0066707_103102971	3300005556	Soil	TTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066704_101731712	3300005557	Soil	LVSIFCIPPTFNTLVDSAADLPGPGAAVLQGTVQLQ*
Ga0066698_103840312	3300005558	Soil	AGALTTGGPAKPAKLASIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP*
Ga0066698_108867351	3300005558	Soil	PLTVGGPGAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAIPGTAQALP*
Ga0066700_103078991	3300005559	Soil	VSIFCIPLTFNPLVDTAANLPGPGAVAIQGETQALP*
Ga0066700_103643971	3300005559	Soil	IFCIPGTFNTLVDSAANIPGPGAVALQGTAQNLP*
Ga0066670_100796171	3300005560	Soil	LTVGGPGAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAIPGTAQALP*
Ga0066705_104701072	3300005569	Soil	VSIFCIPLTFTMLVDSAADLPGPGAVALPVTMQTQ*
Ga0066708_101338133	3300005576	Soil	KLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066691_103881341	3300005586	Soil	AFSSLDLARTIVETGTPAGALTTGGPALPAKLVSIFCIPGTFNTLVDSAANIPGPGAVALQGTAQNLP*
Ga0066706_104962162	3300005598	Soil	GAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066903_1023437631	3300005764	Tropical Forest Soil	TLVSVFCIPPTFGATVDQAADLPGPGAVALQGTSQLLP*
Ga0066696_106191501	3300006032	Soil	ALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP*
Ga0066658_101598041	3300006794	Soil	AAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066658_101641261	3300006794	Soil	SIFCIPLTFSTLVDSAADLPGPGAVAITGVAQALP*
Ga0066658_106258442	3300006794	Soil	GIGSPSDPCVDTTRTITVQGSPAGALTTGGAAKASTLVSIFCIPPSFNSLVDSAADLPGPGAVSLPGVTQALP*
Ga0066665_100849282	3300006796	Soil	KLVSIFCIPGTFNSLVDSAANIPGPGAVALQGTAQNLP*
Ga0066665_107365341	3300006796	Soil	KPAKLVSIFCIPLTFSSLVDGAADLPGPGAVALPGMAKALP*
Ga0066665_110879373	3300006796	Soil	ARTIVETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066665_115899852	3300006796	Soil	GPGAPSTLVSAFCIPLTFSSLVDTAADLPGPGAVAITGTAQALP*
Ga0066659_104128291	3300006797	Soil	TGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0066659_112364471	3300006797	Soil	CSDLARTIVETGAPAGALTTGGASKPSTLVSIFCIPPTFNTLVDSAADLPGPGAVSLVGTTKLQ*
Ga0066659_112428252	3300006797	Soil	AKPATLVSSFCIPPSFNALVDSAADLPGPGAVSIPGVTQALP*
Ga0075435_1016195201	3300007076	Populus Rhizosphere	VSIFCIPPSFTAVVDSAADLPGPGAVSLPGTTQNLP*
Ga0099791_102983582	3300007255	Vadose Zone Soil	PAKLVSIFCIPGTFNSLVDSAANIPGPGAVALSGTAQNLP*
Ga0066710_1028336081	3300009012	Grasslands Soil	SGALTTGGAAKPGKLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP
Ga0066710_1034585412	3300009012	Grasslands Soil	GGAALPAKLVSIFCIPGTFNSLVDSAANIPGPGAVALQGTAQNLP
Ga0066710_1035168311	3300009012	Grasslands Soil	GAPSTLVSIFCIPLTFSSLVDSAEDIPGPGAVAIPGFAQALP
Ga0066709_1008816051	3300009137	Grasslands Soil	GIGSPSNPCDDVTRTIVETGSPAGALITGGAAKPATLVSIFCIPPSFNALVDSAADLPGPGAVSIPGVTQALP*
Ga0066709_1011113681	3300009137	Grasslands Soil	TTGGPAMPATLASIFCIPPSFNSLVDSAADLPGPGAVSLPGMTQAFP*
Ga0066709_1022782811	3300009137	Grasslands Soil	TPQTLVSIFCVPPTFSTIVDSAADLPGPGAVALEGTTQLQ*
Ga0127456_10839081	3300010140	Grasslands Soil	PAGALTTGGAAKPATLSIFCIPPSFNALVDGAADLPGPGAVSLPGTTQNLP*
Ga0134082_101057681	3300010303	Grasslands Soil	IVETGAPAGALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134082_102593332	3300010303	Grasslands Soil	AGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134082_104396002	3300010303	Grasslands Soil	LTTGGAAKPGKLVSIFCIPLTFSSLVDTAADLPGPGAVALSGTAQNLP*
Ga0134082_105475411	3300010303	Grasslands Soil	VETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134088_100543801	3300010304	Grasslands Soil	LTTGGPAKPAKLVSIFCIPLTFSSLIDSAADLPGPGAVAITGVTQALP*
Ga0134088_102535952	3300010304	Grasslands Soil	GPAKPAKLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP*
Ga0134088_104708991	3300010304	Grasslands Soil	ARTIVETGAPAGALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP*
Ga0134088_105684262	3300010304	Grasslands Soil	PGAPSTLVSAFCIPLTFSSLVDTAADLPGPGAVAITGTAQALP*
Ga0134084_101438112	3300010322	Grasslands Soil	GGAGAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAIAGTAQALP*
Ga0134064_100789261	3300010325	Grasslands Soil	KLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP*
Ga0134064_101868761	3300010325	Grasslands Soil	SGPLTVGGAGAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAISGTAQALP*
Ga0134064_104303271	3300010325	Grasslands Soil	PCSDLARTIVETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADQPGPGAVALQGTTQALP*
Ga0134080_106384632	3300010333	Grasslands Soil	GGAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALQGSAQNLP*
Ga0134063_100232821	3300010335	Grasslands Soil	ARTIVETGAPAGALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134071_101607212	3300010336	Grasslands Soil	AKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP*
Ga0134071_101818053	3300010336	Grasslands Soil	GAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134071_103658092	3300010336	Grasslands Soil	TTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134071_106327301	3300010336	Grasslands Soil	VVRTIVETGAAAGALTTGGAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALSGTAQNLP*
Ga0134062_100455401	3300010337	Grasslands Soil	LARTIVETGAPAGALTTGGAGKPAKLVSIFCIPLTFSSLVDGAADLPGPGAVALPGMARALP*
Ga0137388_107790272	3300012189	Vadose Zone Soil	GGPPTPQTLVSIFCVPPTFNTVVDSAADLPGPGAVALEGTTQLQ*
Ga0137364_107083831	3300012198	Vadose Zone Soil	PEKPATLVSIFCIPLTFSSLVDTAADLPGPGAVAIQGVTQSLP*
Ga0137382_100545421	3300012200	Vadose Zone Soil	GPIVVGGPAQPQTLVSIFCIPPSFSPAVDSAADLPGPGAVALEGTTQLQ*
Ga0137363_109091351	3300012202	Vadose Zone Soil	TLVSIFCIPPSFSPAVDSAADLPGPGAVALEGTTQLQ*
Ga0137381_104643531	3300012207	Vadose Zone Soil	IVETGSPSGPLTVGGAGAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAITGTAQALP*
Ga0137387_104508471	3300012349	Vadose Zone Soil	SIFCIPLTFSSLVDTAADLPGPGAVAIEGMTQSLP*
Ga0137361_109656891	3300012362	Vadose Zone Soil	NGARTIVETGSPAGALTTGGAAKPGKLVSIFCIPLTFTMLVDSAADLPGPGAVALPVTMQTQ*
Ga0134059_11037192	3300012402	Grasslands Soil	LVSIFCIPLTFSSLVDTAADLPGPGAVAIPGTAQALP*
Ga0137395_110410501	3300012917	Vadose Zone Soil	KPATLVSIFCIPLTFSTLVDSAADLPGPGAVAITGVAQALT*
Ga0137410_105511101	3300012944	Vadose Zone Soil	TTGGPALPAKLVSIFCIPGTFNPLVDSAADIPGPGAVALQGTAQNLP*
Ga0134110_102417261	3300012975	Grasslands Soil	GAPSKLVSIFCIPLTFSSLVDTAADLPGPGAVAIAGTAQALP*
Ga0134110_102993761	3300012975	Grasslands Soil	SIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134076_103085801	3300012976	Grasslands Soil	TLVSIFCIPPTFNTLVDSAADLPGPGAVSLVGTTQLQ*
Ga0134087_100294961	3300012977	Grasslands Soil	TSLDTARTISETGAAAGALTTGGAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALQGSAQNLP*
Ga0134087_103156241	3300012977	Grasslands Soil	ALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134087_107050162	3300012977	Grasslands Soil	GPAKPAKLASIFCIPLTFSSLVDSAADLPGPGAVAIQGVTQAFP*
Ga0134081_100473351	3300014150	Grasslands Soil	PSKLVSIFCIPLTFSSLVDTAADLPGPGAVAIPGTAQALP*
Ga0134081_100670401	3300014150	Grasslands Soil	PAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP*
Ga0134081_101378421	3300014150	Grasslands Soil	PTSAVNACSDLARTIVETGAPAGALTTGGASKPATLVSIFCIPPTFNTLVDSAADLPGPGAVSLVGTTQLQ*
Ga0134081_102174721	3300014150	Grasslands Soil	KPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP*
Ga0134075_102854481	3300014154	Grasslands Soil	PAKLVSIFCIALTFSSLVDSAADLPGPGAAALQGTTQLQ*
Ga0134078_101050032	3300014157	Grasslands Soil	FTSSNIARTIVETGAVSGALTTGGAAKPGKLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP*
Ga0137403_110942621	3300015264	Vadose Zone Soil	SGALTTGGAAKPAKLASIFCIPLTFSSLVDTAADLPGPGAVALSGTAQNLP*
Ga0134089_102304801	3300015358	Grasslands Soil	KLVSIFCIPLTFSSLVDSAADLPGPGAVAITGVTQALP*
Ga0134085_102668211	3300015359	Grasslands Soil	AAKPGKLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP*
Ga0134083_100719882	3300017659	Grasslands Soil	VSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0066655_108487191	3300018431	Grasslands Soil	GALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0066667_100161401	3300018433	Grasslands Soil	AAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0066667_115711812	3300018433	Grasslands Soil	APSTLVSIFCIPLTFSSLVDSAADLPGPGAVAITGTAQALP
Ga0066667_122839402	3300018433	Grasslands Soil	LTTGGAAKPATLVSIFCIPPSFNALVDSAADLPGPGAVSIPGVTQALP
Ga0066662_121541581	3300018468	Grasslands Soil	APKPATLVSIFCIPPSFNALVDSAADLPGPGAVSIPGVTQALP
Ga0066669_104746521	3300018482	Grasslands Soil	SIFCIPLTFSSLVDSAADLPGPGAVAITGTAQALP
Ga0066669_112427942	3300018482	Grasslands Soil	ARTIVETGSPATALTTGGAAKPAKLVSIFCIPLTFNTLVDSAGDLPGPGAVALPVTMQNQ
Ga0209686_11841681	3300026315	Soil	NPCSDLARTIVETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209472_11445612	3300026323	Soil	ETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209375_11866531	3300026329	Soil	LTTGGPAKPAKLVSIFCNPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209267_10290091	3300026331	Soil	VETGAPAGALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVAITGVTQALP
Ga0209267_11378381	3300026331	Soil	GAFTSLDTARTISETGAAAGALTTGGAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALQGSAQNLP
Ga0209803_13517371	3300026332	Soil	AGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVAITGVTQALP
Ga0209377_11651711	3300026334	Soil	VSIFCIPGTFNSLVDSAANIPGPGAVALQGTAQNLP
Ga0209057_10839372	3300026342	Soil	AGALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQAFP
Ga0209057_10883881	3300026342	Soil	AGPPKPATLVSIFCIPLTFSSLVDTAADLPGPGAVAIQGVTQSLP
Ga0209057_12261131	3300026342	Soil	GAASGALTTGGAAKPGKLVSIFCIPLTFSSLVDTAADLPGPGAVALQGNAQALP
Ga0209808_10678883	3300026523	Soil	VETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209808_12435041	3300026523	Soil	KLVSIFCIPLTFSSLVDTAADLPGPGAVAIQGVTQSLP
Ga0209378_10175493	3300026528	Soil	VGGPGAQSKLVSIFCIPLTFSSLVDTAADLPGPGAVAISGTAQALP
Ga0209157_10055771	3300026537	Soil	IVETGAPAGALTTGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVAITGVTQALP
Ga0209056_102101782	3300026538	Soil	TGAAAGALTTGGAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALQGSAQNLP
Ga0209056_106953492	3300026538	Soil	PAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209376_11151762	3300026540	Soil	TSLDTARTISETGAAAGALTTGGAAKPAKLVSIFCIPLTFNSLVDSAADLPGPGAVALQGSAQNLP
Ga0209376_11683821	3300026540	Soil	AGAMTTGGPAKPAKLASIFCIPLTFSALVDTAADLPGPGAVALSGTAQNLP
Ga0209161_100159311	3300026548	Soil	TGGPAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209161_100742382	3300026548	Soil	PLTVGGPGAQSKLVSIFCIPLTFSSLVDTAADLPGPGAVAISGTAQALP
Ga0209161_101662521	3300026548	Soil	AKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209161_103126232	3300026548	Soil	KAGKLVSIFCIPLTFTMLVDSAADLPGPGAVALPVTMQTQ
Ga0209161_105596202	3300026548	Soil	NDIARTISASGAAAGALTTGGAPKPQTLVSIFCIPPSFNPLVDAAADLPGPGAVSLPVNSQLLP
Ga0209474_102058621	3300026550	Soil	TGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0209474_104194861	3300026550	Soil	TSAVNPCSDLARTIVETGAPAGALTTGGAAKPAKLVSIFCIPLTFSSLVDSAADLPGPGAVALQGTTQALP
Ga0307471_1013037851	3300032180	Hardwood Forest Soil	STGGPAKPSTLVSIFCIPLTFSSLVDGAADLPGPGAVALPGLAKALP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062616

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences