Metagenome / Metatranscriptome Family F062962

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	43 residues
Representative Sequence	EEIAPAFLIMAAAAVTFVTLLRFRETYRTPFIGGSSGKAAAYA
Number of Associated Samples	103
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.85 %
% of genes near scaffold ends (potentially truncated)	93.85 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (36.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.62% β-sheet: 0.00% Coil/Unstructured: 63.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF01262	AlaDh_PNT_C	25.38
PF05222	AlaDh_PNT_N	9.23
PF00989	PAS	3.85
PF04392	ABC_sub_bind	3.85
PF14023	DUF4239	3.85
PF06912	DUF1275	3.08
PF01556	DnaJ_C	2.31
PF02738	MoCoBD_1	1.54
PF00226	DnaJ	1.54
PF03401	TctC	1.54
PF00033	Cytochrome_B	1.54
PF08028	Acyl-CoA_dh_2	1.54
PF02195	ParBc	1.54
PF12769	PNTB_4TM	0.77
PF01614	IclR	0.77
PF01292	Ni_hydr_CYTB	0.77
PF04209	HgmA_C	0.77
PF00583	Acetyltransf_1	0.77
PF01710	HTH_Tnp_IS630	0.77
PF00892	EamA	0.77
PF09084	NMT1	0.77
PF13570	PQQ_3	0.77
PF02233	PNTB	0.77
PF13436	Gly-zipper_OmpA	0.77
PF13673	Acetyltransf_10	0.77
PF13358	DDE_3	0.77
PF09339	HTH_IclR	0.77
PF07883	Cupin_2	0.77
PF13505	OMP_b-brl	0.77
PF03928	HbpS-like	0.77
PF00083	Sugar_tr	0.77
PF14108	ABA4-like	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.85
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	3.08
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	2.31
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	1.54
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.54
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.54
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.77
COG1282	NAD/NADP transhydrogenase beta subunit	Energy production and conversion [C]	0.77
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.77
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.77
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.77
COG3038	Cytochrome b561	Energy production and conversion [C]	0.77
COG3415	CRISPR-associated protein Csa3, CARF domain	Defense mechanisms [V]	0.77
COG3508	Homogentisate 1,2-dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.77
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.77
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.77
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.15 %
Unclassified	root	N/A	43.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.15 %
Unclassified	root	N/A	43.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.15 %
Unclassified	root	N/A	43.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.77 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.31 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.77 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.77 %
Blastochloridaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Acidisoma	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma	0.77 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.77 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	0.77 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.77 %
Acidisoma cellulosilyticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	0.77 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	0.77 %
Azospirillum rugosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum rugosum	0.77 %
Blastochloris sulfoviridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.85 %
Novosphingobium sp. TCA1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. TCA1	0.77 %
Acidisoma cellulosilyticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	0.77 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	0.77 %
Azospirillum rugosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum rugosum	0.77 %
Blastochloris sulfoviridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	0.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002906\|JGI25614J43888_10017754	Not Available	2284	Open in IMG/M
3300002917\|JGI25616J43925_10279014	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300002917\|JGI25616J43925_10302110	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005175\|Ga0066673_10856337	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300005435\|Ga0070714_101971396	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300005436\|Ga0070713_101407269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676	Open in IMG/M
3300005455\|Ga0070663_100799150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	809	Open in IMG/M
3300005471\|Ga0070698_101530497	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300005713\|Ga0066905_100909911	Not Available	770	Open in IMG/M
3300005764\|Ga0066903_101198605	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300005764\|Ga0066903_102342649	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300005764\|Ga0066903_103095708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	900	Open in IMG/M
3300005764\|Ga0066903_103223273	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300005764\|Ga0066903_105475771	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300006175\|Ga0070712_100411983	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300006573\|Ga0074055_11336270	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300006904\|Ga0075424_100129734	Not Available	2666	Open in IMG/M
3300009162\|Ga0075423_11596925	Not Available	701	Open in IMG/M
3300010036\|Ga0126305_11094516	Not Available	548	Open in IMG/M
3300010043\|Ga0126380_11099886	Not Available	677	Open in IMG/M
3300010045\|Ga0126311_11917860	Not Available	503	Open in IMG/M
3300010359\|Ga0126376_11571916	Not Available	689	Open in IMG/M
3300010359\|Ga0126376_12338715	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300010360\|Ga0126372_10924980	Not Available	877	Open in IMG/M
3300010360\|Ga0126372_12435565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300010371\|Ga0134125_12023039	Not Available	626	Open in IMG/M
3300010376\|Ga0126381_101408210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. TCA1	1008	Open in IMG/M
3300010376\|Ga0126381_103517002	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300010398\|Ga0126383_11801992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	700	Open in IMG/M
3300010398\|Ga0126383_11808172	Not Available	699	Open in IMG/M
3300010398\|Ga0126383_12385212	Not Available	614	Open in IMG/M
3300010398\|Ga0126383_12623049	Not Available	587	Open in IMG/M
3300010398\|Ga0126383_12716074	Not Available	578	Open in IMG/M
3300011107\|Ga0151490_1078100	Not Available	568	Open in IMG/M
3300011269\|Ga0137392_10013698	All Organisms → cellular organisms → Bacteria → Proteobacteria	5481	Open in IMG/M
3300012206\|Ga0137380_10034095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4697	Open in IMG/M
3300012208\|Ga0137376_10867001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	776	Open in IMG/M
3300012209\|Ga0137379_10287337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1556	Open in IMG/M
3300012359\|Ga0137385_10676389	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300012363\|Ga0137390_10057184	All Organisms → cellular organisms → Bacteria → Proteobacteria	3797	Open in IMG/M
3300012363\|Ga0137390_11818707	Not Available	540	Open in IMG/M
3300012930\|Ga0137407_11780309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300012948\|Ga0126375_10395216	Not Available	997	Open in IMG/M
3300012951\|Ga0164300_10016887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2445	Open in IMG/M
3300012960\|Ga0164301_10081676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1791	Open in IMG/M
3300012989\|Ga0164305_11712409	Not Available	565	Open in IMG/M
3300015200\|Ga0173480_10750991	Not Available	617	Open in IMG/M
3300015242\|Ga0137412_10306538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244	Open in IMG/M
3300015371\|Ga0132258_12508110	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300015374\|Ga0132255_100928410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1302	Open in IMG/M
3300016270\|Ga0182036_11267091	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300016294\|Ga0182041_10061537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2594	Open in IMG/M
3300016319\|Ga0182033_10850405	Not Available	806	Open in IMG/M
3300016319\|Ga0182033_11001971	Not Available	743	Open in IMG/M
3300016319\|Ga0182033_11023536	Not Available	735	Open in IMG/M
3300016319\|Ga0182033_11455791	Not Available	617	Open in IMG/M
3300016341\|Ga0182035_10533416	Not Available	1006	Open in IMG/M
3300016341\|Ga0182035_11196884	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300016404\|Ga0182037_10595504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300016404\|Ga0182037_11136504	Not Available	684	Open in IMG/M
3300016404\|Ga0182037_11406305	Not Available	617	Open in IMG/M
3300016445\|Ga0182038_10393309	Not Available	1160	Open in IMG/M
3300016445\|Ga0182038_11085342	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300017961\|Ga0187778_11073502	Not Available	560	Open in IMG/M
3300017970\|Ga0187783_10174184	All Organisms → cellular organisms → Bacteria → Proteobacteria	1583	Open in IMG/M
3300017970\|Ga0187783_10204045	Not Available	1451	Open in IMG/M
3300017974\|Ga0187777_10527792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827	Open in IMG/M
3300018058\|Ga0187766_10555009	Not Available	779	Open in IMG/M
3300018075\|Ga0184632_10055250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1718	Open in IMG/M
3300018090\|Ga0187770_11774812	Not Available	505	Open in IMG/M
3300019887\|Ga0193729_1118698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300020016\|Ga0193696_1020472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1779	Open in IMG/M
3300020581\|Ga0210399_11068057	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300025901\|Ga0207688_10001814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11369	Open in IMG/M
3300025915\|Ga0207693_10800211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	727	Open in IMG/M
3300025929\|Ga0207664_10751160	Not Available	877	Open in IMG/M
3300025961\|Ga0207712_11324868	Not Available	644	Open in IMG/M
3300026304\|Ga0209240_1001844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8168	Open in IMG/M
3300026494\|Ga0257159_1060977	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300027502\|Ga0209622_1016412	Not Available	1280	Open in IMG/M
3300027576\|Ga0209003_1113738	Not Available	514	Open in IMG/M
3300028047\|Ga0209526_10053892	All Organisms → cellular organisms → Bacteria → Proteobacteria	2832	Open in IMG/M
3300028721\|Ga0307315_10029307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1463	Open in IMG/M
3300028768\|Ga0307280_10068589	Not Available	1137	Open in IMG/M
3300028771\|Ga0307320_10095615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum rugosum	1126	Open in IMG/M
3300028778\|Ga0307288_10113737	Not Available	996	Open in IMG/M
3300028796\|Ga0307287_10112240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1030	Open in IMG/M
3300028819\|Ga0307296_10662748	Not Available	571	Open in IMG/M
3300028872\|Ga0307314_10080224	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300028872\|Ga0307314_10280625	Not Available	525	Open in IMG/M
3300028881\|Ga0307277_10035686	All Organisms → cellular organisms → Bacteria → Proteobacteria	1995	Open in IMG/M
3300031544\|Ga0318534_10075280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1914	Open in IMG/M
3300031545\|Ga0318541_10477225	Not Available	698	Open in IMG/M
3300031572\|Ga0318515_10502323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	647	Open in IMG/M
3300031573\|Ga0310915_10140285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1665	Open in IMG/M
3300031573\|Ga0310915_10146898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1628	Open in IMG/M
3300031573\|Ga0310915_10729181	Not Available	699	Open in IMG/M
3300031719\|Ga0306917_11302796	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300031720\|Ga0307469_12181479	Not Available	539	Open in IMG/M
3300031744\|Ga0306918_10826337	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300031744\|Ga0306918_11087955	Not Available	619	Open in IMG/M
3300031747\|Ga0318502_10202034	Not Available	1149	Open in IMG/M
3300031769\|Ga0318526_10353958	Not Available	600	Open in IMG/M
3300031793\|Ga0318548_10083529	Not Available	1512	Open in IMG/M
3300031831\|Ga0318564_10073965	Not Available	1502	Open in IMG/M
3300031835\|Ga0318517_10583297	Not Available	502	Open in IMG/M
3300031858\|Ga0310892_10306072	Not Available	1004	Open in IMG/M
3300031879\|Ga0306919_10361253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1110	Open in IMG/M
3300031890\|Ga0306925_11227968	Not Available	749	Open in IMG/M
3300031890\|Ga0306925_12268813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	502	Open in IMG/M
3300031896\|Ga0318551_10475157	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300031910\|Ga0306923_10169164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	2496	Open in IMG/M
3300031912\|Ga0306921_11749041	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300031942\|Ga0310916_10844683	Not Available	769	Open in IMG/M
3300031954\|Ga0306926_12322893	Not Available	593	Open in IMG/M
3300031959\|Ga0318530_10195486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	829	Open in IMG/M
3300032001\|Ga0306922_10087588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3277	Open in IMG/M
3300032001\|Ga0306922_11657923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	634	Open in IMG/M
3300032025\|Ga0318507_10269731	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300032035\|Ga0310911_10232776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1052	Open in IMG/M
3300032039\|Ga0318559_10266915	Not Available	792	Open in IMG/M
3300032052\|Ga0318506_10075119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1410	Open in IMG/M
3300032054\|Ga0318570_10078089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1419	Open in IMG/M
3300032059\|Ga0318533_11019417	Not Available	607	Open in IMG/M
3300032066\|Ga0318514_10235056	Not Available	963	Open in IMG/M
3300032076\|Ga0306924_10839359	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1021	Open in IMG/M
3300032180\|Ga0307471_100024146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4537	Open in IMG/M
3300032205\|Ga0307472_100607200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300032261\|Ga0306920_103061252	Not Available	629	Open in IMG/M
3300033290\|Ga0318519_10951165	Not Available	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.62%
Host-Associated	Host-Associated	5.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.85%
Plants	Host-Associated → Plants	5.38%
Aquatic	Environmental → Aquatic	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.31%
Sediment	Environmental → Aquatic → Sediment	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.92%
Loam	Environmental → Terrestrial → Soil → Loam	12.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.54%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25614J43888_100177542	3300002906	Grasslands Soil	MSFRHLKIGDKVISIAPLVDRTGEEIAPAFMIMAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA*
JGI25616J43925_102790141	3300002917	Grasslands Soil	IGDKVISIAPLVDRTGEEIAPAFMIMAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA*
JGI25616J43925_103021101	3300002917	Grasslands Soil	LVNRTGEEIAPAFMIMAAAAVTFMTLLWFRETYRTPFIGGSSGTAAAYA*
Ga0066673_108563371	3300005175	Soil	WLVSRSGEEVAPALLTTAAAAVSFPMLLRFRETYRSPIRANSGTVAAYA*
Ga0070714_1019713961	3300005435	Agricultural Soil	ERTGDEIAPAFLIMAAAAVTAVTVMCFRETYRAPFAGGEVTA*
Ga0070713_1014072692	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RTGDEIAPAFMIMAAAAITFTTLLRFRETYRLPFAARTAATAAAYG*
Ga0070663_1007991502	3300005455	Corn Rhizosphere	NEIAPAFLIMAAAAVAFFTILRFRETYRAPFAGGISSAASV*
Ga0070698_1015304972	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RTGDEIAPAFLIMASAAVTAVTLMCFRETYRAPFAGGTSNAAPAYT*
Ga0066905_1009099111	3300005713	Tropical Forest Soil	RLIPRRLYMQLFPIMAAAAVTFARKPFIGGSSGTAAAYA*
Ga0066903_1011986053	3300005764	Tropical Forest Soil	PGFLMMAAAALSLVTILRFPETYRTPFAGMTSRAAAAYA*
Ga0066903_1023426492	3300005764	Tropical Forest Soil	TAPAFLIMAAAAVSLATTLWFRETYRAPFAGARAVPAAA*
Ga0066903_1030957081	3300005764	Tropical Forest Soil	LIMASAAVAAVTLTRFRETYRALFAGGSSNAAPAHP*
Ga0066903_1032232732	3300005764	Tropical Forest Soil	LIMASAAVTAVTLTRFRETYRALFAGGSSNAATAHP*
Ga0066903_1054757711	3300005764	Tropical Forest Soil	ERTGDEIAPAFLIMASAAVTAVTLTRFRETYRAPFAGGTSNVAPALA*
Ga0070712_1004119832	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EIAPAFMIMAAAAITFTTLLRFRETYRLPFAARTAATAAAYG*
Ga0074055_113362702	3300006573	Soil	PAFLIMAAAAVTFMTILGFRETYRAPFVASSPAAATAYA*
Ga0075424_1001297342	3300006904	Populus Rhizosphere	MIMAAAAVTFMTLWFRETYRTPFIGGSSGTAAAYA*
Ga0075423_115969252	3300009162	Populus Rhizosphere	FLIMAAAAVTFLTLLRFRETYRSPFIGASSRAAAAYA*
Ga0126305_110945162	3300010036	Serpentine Soil	PAFLIMAAAAVTFATILRFRETYRAPFVRSPAAATVYA*
Ga0126380_110998861	3300010043	Tropical Forest Soil	IAPAFMVMAAAAVTFATLLWFRETYRTPFVGSSSGTAAAYA*
Ga0126311_119178602	3300010045	Serpentine Soil	LIMAAAAVTFATILRFRETYRAPFVGNPAAASAYA*
Ga0126376_115719161	3300010359	Tropical Forest Soil	AFMIMAAAAVNFLTVLQFRETYRSPFIGASSRAAAAYA*
Ga0126376_123387151	3300010359	Tropical Forest Soil	LVERTGDEIAPAFLIMASAAVTAVTLTRFRETYRVLFAGGSSNAAPAHP*
Ga0126372_109249802	3300010360	Tropical Forest Soil	MAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA*
Ga0126372_124355651	3300010360	Tropical Forest Soil	RTADETAPAFLIMASAAISFATILWFRETYRAPFAGGRAAPAAAGT*
Ga0134125_120230392	3300010371	Terrestrial Soil	FLIMAAAAVTFLTVLRFRETYRGPFIGASSRAAAAYA*
Ga0126381_1014082102	3300010376	Tropical Forest Soil	RTGNEIAPGFLMMVAAAVTFLTILRFPETYRIPFVGTESRAAPAYT*
Ga0126381_1035170021	3300010376	Tropical Forest Soil	TGDEIAPAFLIMASAAVTAVTLTRFRETYRAQFAGGSSNAAPAHP*
Ga0126383_118019921	3300010398	Tropical Forest Soil	ERTGDEIAPAFLIMAAVAVTAVALTRFRETYRAPFVGGTSNIAPALA*
Ga0126383_118081722	3300010398	Tropical Forest Soil	LIMAAAAIAFATVLRFRETYRLPFIGRGSGVAAAAYA*
Ga0126383_123852122	3300010398	Tropical Forest Soil	MGAAAVTFATLLWFRETYRTPFIGGSPGAAAAYA*
Ga0126383_126230491	3300010398	Tropical Forest Soil	ERTGDEIAPAFLIMAAVAVTAVALTRFRETYRAPFVGGTSNVAPALA*
Ga0126383_127160741	3300010398	Tropical Forest Soil	EIAPAFLIMASAAVTAVTLMRFRETYRAPFAGVLLTLPRP*
Ga0151490_10781002	3300011107	Soil	VNRTGDEIAPAFLIMAAAAVTFMTILGFRETYRAPFVASSPAAATAYA*
Ga0137392_100136987	3300011269	Vadose Zone Soil	EIAPAFMIMAAAAVTFMTLLWFRETYRTPFIGGSSGTAAAYA*
Ga0137380_100340953	3300012206	Vadose Zone Soil	MAAAAVSFAMLLRFRETYRSPVIQAKSSTVAAYA*
Ga0137376_108670011	3300012208	Vadose Zone Soil	MRFLPDFLMMVAAANTFLTNLRFPETYRIQLSESASSAAAAYT*
Ga0137379_102873372	3300012209	Vadose Zone Soil	LLTTAAAAVSFAMLLRFRETYRSPVIQAKSSTVAAYA*
Ga0137385_106763892	3300012359	Vadose Zone Soil	LIMASAAVTAVTLMCFRETYRAPFAGGTSNAAPAYT*
Ga0137390_100571846	3300012363	Vadose Zone Soil	RTGDEIAPAFLIMASACVTLMTIFRFRETYRAPFRGDASRAAAAYA*
Ga0137390_118187071	3300012363	Vadose Zone Soil	EDEIAPAFLIMAAAAVTFLTLLQFRETYRAPFVGGSAGAAMARA*
Ga0137407_117803092	3300012930	Vadose Zone Soil	IMAAAAVAFFTILRFRETYRAPFAGGTSSAARVYA*
Ga0126375_103952162	3300012948	Tropical Forest Soil	VMAAAAVTFATLLWFRETYRTPFVGSSSGTAAAYA*
Ga0164300_100168871	3300012951	Soil	APAFLIMAAAAVTFLTLLRFRETYRSPFIGASSRAAAAYA*
Ga0164301_100816764	3300012960	Soil	PAFLIMAAAAVTFLTVLRFRETYRGPFIGASSRAAAAYA*
Ga0164305_117124092	3300012989	Soil	GNEIAPAFLIMAAAAVTFITMFWFRETYRTSFDAEFSSTAA*
Ga0173480_107509912	3300015200	Soil	DETVPAFLIMAAAAVTFTTILWFRETYRAAFVGSSAAATAYA*
Ga0137412_103065383	3300015242	Vadose Zone Soil	MAAAAVTFGTVLRFRETYRAPFVGGRSGAAAAYA*
Ga0132258_125081103	3300015371	Arabidopsis Rhizosphere	LIMAAAAVTFTTILWFRETYRAAFVGSSAAATAYA*
Ga0132255_1009284101	3300015374	Arabidopsis Rhizosphere	FLIMAAAAVTFLTVLRFRETYRSPFITASSAAAAAYARI*
Ga0182036_112670912	3300016270	Soil	RTGDEIAAGFLMMVAAAVTFLTLLRFPETYRTPFVGFTSRAAAAYA
Ga0182041_100615373	3300016294	Soil	FLMMAAAAVSFVTILRFPETYRTPFAGITSKAAAAYA
Ga0182033_108504052	3300016319	Soil	TGDEIAPAFMIMAAAAVTFATLLWFRETYRTPFVGGSSGAAAAYA
Ga0182033_110019712	3300016319	Soil	ERTGDEIAPAFLIMASAAVTAVTLMRFRETYRAPFAGGTSNVAPALA
Ga0182033_110235362	3300016319	Soil	VAAAVTFLTILRVPETYRTLFVGIKSRAAAAYALRGAGL
Ga0182033_114557911	3300016319	Soil	AFLIMASAAVTAVTLMCFRETYRAPFAGGTSNVAPALA
Ga0182035_105334161	3300016341	Soil	SWLVARTGDEIAPGFLMMAAAAVSFVTILRFPETYRIPFAGITSRAAAAYA
Ga0182035_111968842	3300016341	Soil	WLVARTGDEIAPGFLMMVAAAVTFLTILRFPETYRAPFVGSRSRAAAAYA
Ga0182037_105955042	3300016404	Soil	ASWLVARTGDEIAPGFLMMAAAAVSFVTILRFPETYRTPFAGITSKAAAAYA
Ga0182037_111365042	3300016404	Soil	VLALGSSVEAAVSFVTILRFPETYRSPFAGIRSRIAAAY
Ga0182037_114063052	3300016404	Soil	ARTGDEIAPGFLMMAAAAVSFVTILRFPETYRIPFAGITSRAAAAYA
Ga0182038_103933091	3300016445	Soil	APAFMVMAAAAVTFATLLWFRETYRTPFIGGSSGTAAAYA
Ga0182038_110853421	3300016445	Soil	SWLVARTGDEIAPGFLMMAAAAVSFVTILRFPETYRTPFAGITSRAAAYA
Ga0187778_110735021	3300017961	Tropical Peatland	FLMMVAAAVTLLTILRFPETYRTPFVGITSRAAAAYA
Ga0187783_101741841	3300017970	Tropical Peatland	TGDEIAPGFLMMVAAAVTLLTILRFPETYRTPFVGIISRAAAAYA
Ga0187783_102040452	3300017970	Tropical Peatland	TGDEIAPGFLMMVAAAVTLLTILRFPETYRTPFVGIISRAATAYA
Ga0187777_105277924	3300017974	Tropical Peatland	PGFLMMVAAAVTFLTILRFPETYRTPFVGIISRAAAAYA
Ga0187766_105550092	3300018058	Tropical Peatland	LVARTGDEIAPGFLMMVAAAVTFLTILRFPETYRTPFVGIISRAAAAYA
Ga0184632_100552501	3300018075	Groundwater Sediment	RTENELAPAFLIMAAAVVTFATVLQFRETYRAPFAGVRPAPAAARA
Ga0187770_117748121	3300018090	Tropical Peatland	WLVARTGDEIAPGFLMMVAAGVTFLTLLRFPETYRTRFVGITSTAAAAYA
Ga0193729_11186981	3300019887	Soil	RTGEEIAPAFLIMAASAVTFMTILRFRETYRAPFVAGSPAATAYA
Ga0193696_10204723	3300020016	Soil	RQITSRTGDEISPAFLIMAAAAVTFMTILGFRETYRAPFVAGSPAAATAYA
Ga0210399_110680571	3300020581	Soil	VDRTGDEIAPAFMIMGAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA
Ga0207688_1000181411	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	AFLIMAAAAVTFATILRFRETYRAPFVGSPAAATAYA
Ga0207693_108002111	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	TGDEIAPAFMIMAAAAITFTTLLRFRETYRLPFAARTAATAAAYG
Ga0207664_107511602	3300025929	Agricultural Soil	RTGDEIAPAFLIMAAAAVTFLTLLRFRETYRSPFIGASSRAAAAYA
Ga0207712_113248682	3300025961	Switchgrass Rhizosphere	GDEISPAFLIMAAAAVTFATILRFRETYRAPFVGSPAAATAYA
Ga0209240_10018449	3300026304	Grasslands Soil	MSFRHLKIGDKVISIAPLVDRTGEEIAPAFMIMAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA
Ga0257159_10609771	3300026494	Soil	ISIAPLVDRTGEEIAPAFMIMAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA
Ga0209622_10164122	3300027502	Forest Soil	IMGAAAVTFATLLWFRETYRKPFIGGSSGAAAAYA
Ga0209003_11137381	3300027576	Forest Soil	GLSSAFFAGAVTFATLLWFRETYRKPFIGGSSGAAAAYA
Ga0209526_100538925	3300028047	Forest Soil	DEEIAPAFMIMAAAAVTFATLLWFRETYRTPFIGGSSGTAAAYA
Ga0307315_100293073	3300028721	Soil	FLIMAAAAVTFMTILGFRETYRAPFVAGSPAAATAYA
Ga0307280_100685892	3300028768	Soil	DEISPAFLIMAAAAVSFATILRFRETYRAPFVGSLAAATAYA
Ga0307320_100956152	3300028771	Soil	LIMAAAAVAFFTILRFRETYRAPFAGDTSSAARIYA
Ga0307288_101137371	3300028778	Soil	GDEISPAFLIMAAAAVTFATILRFRETYRAPFVGSSAAATAHA
Ga0307287_101122401	3300028796	Soil	FLIMAAAAVAFFTILRFRETYRAPFAGDTSSAARIYA
Ga0307296_106627483	3300028819	Soil	FLIMAAGAVSFGAVLRFAETYRAPFVGGSSAAAAAYA
Ga0307314_100802241	3300028872	Soil	ISPAFLIMAAAAVSFATILRFRETYRAPFVGSLAAATAYA
Ga0307314_102806253	3300028872	Soil	LIMAAGAVSFGAVLRFAETYRAPFVGGSSAAAAAYA
Ga0307277_100356861	3300028881	Soil	EEIAPAFLIMAAAAVTFVTLLRFRETYRTPFIGGSSGKAAAYA
Ga0318534_100752801	3300031544	Soil	AFMVMAAAAVTFATLLWFRETYRTPFIGGRSGAVAAYA
Ga0318541_104772252	3300031545	Soil	TLTAQSELAGPPLVARTGDEIAPGFLMMAAAAVSFVTILRFPETYRIPFAGITSRAAAAY
Ga0318515_105023233	3300031572	Soil	VLMMAAAAVSVVTILRFPETYRTPFSAITSSAAAAYA
Ga0310915_101402851	3300031573	Soil	EIAPGFLMMAAAAVSFVTILRFPETYRTPFAGITSKAAAAYA
Ga0310915_101468982	3300031573	Soil	EIAPGLLMVVAAAVTFLTILRFPETYRAPFVGSRSRAAAAYA
Ga0310915_107291812	3300031573	Soil	RTGDEIAPGFLMMAAAAVSFVTILRFPETYRIPFAGITSRAAAAYA
Ga0306917_113027961	3300031719	Soil	TGDEIAPGFLMMAAAAISLMTILRFPETYRIPFAGIRSRAAAAYA
Ga0307469_121814791	3300031720	Hardwood Forest Soil	MAAAAVTFATVLRFRETHHLPFVGGGSGAAAAAHA
Ga0306918_108263371	3300031744	Soil	DEIAPGFLMMVAAGVTFLTLLRFPETYRTPFVGFTSRVAAAYA
Ga0306918_110879551	3300031744	Soil	TGDEIAPAFLIMASAAVTAVTLMCFRETYRAPFAGGTSNVAAALA
Ga0318502_102020341	3300031747	Soil	LVNRTDDEIAPEFMVMAAAAVTFATLLWFRETYRTPFIGGSSGTAAAYA
Ga0318526_103539582	3300031769	Soil	IMAAAAVTFATLLWFRETYRTPFVGGSSGAAAAYA
Ga0318548_100835293	3300031793	Soil	VMGAAAVTFATLLCFRETYRTPFIGGRSGAAAAYA
Ga0318564_100739651	3300031831	Soil	VNRTGDEITPAFMVMGAAGVTFATLLWFRETYRTPFIGGRSGAAAAYA
Ga0318517_105832971	3300031835	Soil	EEIASAFLIMAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA
Ga0310892_103060722	3300031858	Soil	LVSRTGDEISPAFLIMAAAAVTFATILRFRETYRAPFVGSPAAATACA
Ga0306919_103612531	3300031879	Soil	TGDEIAPGFLMMAAAAVSFVTILRFPETYRTPFSAITSSAAAAYA
Ga0306925_112279682	3300031890	Soil	DEIAPAFMVMAAAAVTFATLLWFRETYRTPFIGGRSGAVAAYA
Ga0306925_122688132	3300031890	Soil	EIAPAFLIMASAAVTAVTLMCFRETYRAPFAGGTSNVAPALA
Ga0318551_104751571	3300031896	Soil	TWLVNRTGDEIAPAFMVMAAAAVTFATLLWFRETYRTPFIGGSSGTAAAYA
Ga0306923_101691645	3300031910	Soil	VARTGNEIAPGFLMMVAAAVTFLTLLRFPETYRTSFVGITSRAAAAYA
Ga0306921_117490412	3300031912	Soil	APGFLMMAAAAVSFVTILRFPETYRTPFAGITSKAAAAYA
Ga0310916_108446832	3300031942	Soil	NEIAPGFLMMVAAAVTFLTLLRFPETYRTSFVGITSRAAAAYA
Ga0306926_123228932	3300031954	Soil	RTGDEIAPAFLIMASAAVTAVTLMCFRETYRAPFAGGTSNVAAALA
Ga0318530_101954863	3300031959	Soil	EIAPGFLMMAAAAVSFVTILRFPETYRTPFSAITSSAAAAYA
Ga0306922_100875883	3300032001	Soil	RTGDEIAPGFLMMAAAAVSFVTILRFPETYRTPFAGITSKAAAAYA
Ga0306922_116579233	3300032001	Soil	GDEIAPGFLMMAAAAVSFVTILRFPETYRNPFAGMSKATAAYA
Ga0318507_102697312	3300032025	Soil	VNRTGDEIAPAFMVMAAAAVTFATLLWFRETYRTPFIGGRSGAVAAYA
Ga0310911_102327761	3300032035	Soil	WLVARTGNEIAPGFLMMAAAGVTFLTLRRFPETYRTSFVGITSRAAAAYA
Ga0318559_102669152	3300032039	Soil	GEEITPAFLIMAAAAVTFATLLWFRETYRSPFIGGSSGAAAAYA
Ga0318506_100751191	3300032052	Soil	TGDEIAPGFLMMVAAAVTFLTLLRFSETYRTPFAGTRSRAAAAYA
Ga0318570_100780891	3300032054	Soil	ARTGDEIAPGFLMMVAAAVTFLTLLRFSETYRTPFAGTRSRAAAAYA
Ga0318533_110194172	3300032059	Soil	EIAPGFLMMAAAALSLMTILRFPETYRIPFAGITSRAAAAYA
Ga0318514_102350562	3300032066	Soil	FLIMAAAAVTFATLLWFRETYRTPFIGGSSGAAAAYA
Ga0306924_108393591	3300032076	Soil	TGNEIAPGFLMMVAAAVTFLTILRVPETYRTLFVGIKSRAAAAYA
Ga0307471_1000241461	3300032180	Hardwood Forest Soil	FLIMAAAAVTFLTLLRFRETYRSPFIGASSRAAAAYA
Ga0307472_1006072001	3300032205	Hardwood Forest Soil	APAFLIMAAAAVTFMTILGFRETYRAPFVAGSPAAATAYA
Ga0306920_1030612521	3300032261	Soil	APGLLMVVAAAVTFLTILRFPETYRAPFVGSRSRAAAAYA
Ga0318519_109511651	3300033290	Soil	IMASAAVTAVTLMRFRETYRAPFAGGTSNVAPALA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences