Metagenome / Metatranscriptome Family F063064

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063064
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	52 residues
Representative Sequence	VIRDGNGLSRGEILEKMGLKGNKSGEMSVSNALTALTKANQVSRRDGKYHAA
Number of Associated Samples	111
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.33 %
% of genes near scaffold ends (potentially truncated)	74.62 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.538 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.846 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.385 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.00% β-sheet: 11.25% Coil/Unstructured: 58.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.0: automated matches	d7k63u_	7k63	0.82652
a.4.5.0: automated matches	d7k5yu_	7k5y	0.81921
a.4.5.0: automated matches	d7dh8a_	7dh8	0.80064
a.4.5.16: C-terminal domain of RPA32	d4ou0a_	4ou0	0.79836
a.4.5.0: automated matches	d5hs7a1	5hs7	0.79322

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF10609	ParA	6.15
PF12728	HTH_17	4.62
PF13650	Asp_protease_2	4.62
PF08448	PAS_4	2.31
PF06628	Catalase-rel	1.54
PF05930	Phage_AlpA	1.54
PF04909	Amidohydro_2	1.54
PF13727	CoA_binding_3	0.77
PF02805	Ada_Zn_binding	0.77
PF05553	DUF761	0.77
PF00501	AMP-binding	0.77
PF16326	ABC_tran_CTD	0.77
PF13610	DDE_Tnp_IS240	0.77
PF13439	Glyco_transf_4	0.77
PF05598	DUF772	0.77
PF00107	ADH_zinc_N	0.77
PF05299	Peptidase_M61	0.77
PF13579	Glyco_trans_4_4	0.77
PF02397	Bac_transf	0.77
PF01627	Hpt	0.77
PF10605	3HBOH	0.77
PF13518	HTH_28	0.77
PF13975	gag-asp_proteas	0.77
PF02668	TauD	0.77
PF06415	iPGM_N	0.77
PF14163	SieB	0.77
PF00574	CLP_protease	0.77
PF12681	Glyoxalase_2	0.77
PF13358	DDE_3	0.77
PF04519	Bactofilin	0.77
PF02738	MoCoBD_1	0.77
PF07690	MFS_1	0.77
PF08447	PAS_3	0.77
PF01679	Pmp3	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.54
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.54
COG0753	Catalase	Inorganic ion transport and metabolism [P]	1.54
COG3311	DNA-binding transcriptional regulator AlpA	Transcription [K]	1.54
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.77
COG0401	Membrane potential modulator PMP3/YqaE, plasma membrane proteolipid 3 (PMP3)/Esi3/RCI2/UPF0057 family	Energy production and conversion [C]	0.77
COG0696	Phosphoglycerate mutase (BPG-independent), AlkP superfamily	Carbohydrate transport and metabolism [G]	0.77
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.77
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.77
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.77
COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	Replication, recombination and repair [L]	0.77
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.77
COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	General function prediction only [R]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.54 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.54 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.54 %
Unclassified	root	N/A	28.46 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.15 %
Unclassified	root	N/A	28.46 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.77 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.92 %
Unclassified	root	N/A	28.46 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.77 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.77 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	38.46 %
Unclassified	root	N/A	28.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.08 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.31 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.46 %
Unclassified	root	N/A	28.46 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.31 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.77 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.46 %
Unclassified	root	N/A	28.46 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	2.31 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.77 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.46 %
Unclassified	root	N/A	28.46 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	2.31 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.77 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.46 %
Unclassified	root	N/A	28.46 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.31 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.77 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2007427000\|2007534367	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
2124908008\|FWIREl_GJ4R3DH02IR83B	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300001661\|JGI12053J15887_10042335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2555	Open in IMG/M
3300002568\|C688J35102_120668753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1323	Open in IMG/M
3300003219\|JGI26341J46601_10192118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	556	Open in IMG/M
3300004081\|Ga0063454_100791507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300004081\|Ga0063454_101959520	Not Available	517	Open in IMG/M
3300004156\|Ga0062589_102838086	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300004643\|Ga0062591_103006887	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300004800\|Ga0058861_11794445	Not Available	647	Open in IMG/M
3300004803\|Ga0058862_12743546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300005171\|Ga0066677_10304830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	910	Open in IMG/M
3300005293\|Ga0065715_10758091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300005341\|Ga0070691_10240575	Not Available	967	Open in IMG/M
3300005530\|Ga0070679_100630598	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005543\|Ga0070672_101816206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300005555\|Ga0066692_10159206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1391	Open in IMG/M
3300005560\|Ga0066670_10792193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300005564\|Ga0070664_100397293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1260	Open in IMG/M
3300005587\|Ga0066654_10449820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300005614\|Ga0068856_101537636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
3300005617\|Ga0068859_102610540	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005719\|Ga0068861_101113795	Not Available	759	Open in IMG/M
3300005841\|Ga0068863_101260376	Not Available	746	Open in IMG/M
3300005843\|Ga0068860_100443881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1289	Open in IMG/M
3300005903\|Ga0075279_10090692	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300005904\|Ga0075280_10014177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1331	Open in IMG/M
3300005921\|Ga0070766_11294834	Not Available	505	Open in IMG/M
3300006047\|Ga0075024_100913171	Not Available	500	Open in IMG/M
3300006169\|Ga0082029_1060499	Not Available	527	Open in IMG/M
3300006176\|Ga0070765_101349959	Not Available	672	Open in IMG/M
3300006358\|Ga0068871_101147057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300006755\|Ga0079222_10896650	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300006800\|Ga0066660_10568325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300006804\|Ga0079221_10209937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1074	Open in IMG/M
3300006854\|Ga0075425_102799395	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300006871\|Ga0075434_101690313	Not Available	641	Open in IMG/M
3300006893\|Ga0073928_10002556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30948	Open in IMG/M
3300007821\|Ga0104323_119000	Not Available	1488	Open in IMG/M
3300009012\|Ga0066710_101643633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	981	Open in IMG/M
3300009089\|Ga0099828_11731387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300009143\|Ga0099792_10979298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300010041\|Ga0126312_10408507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	966	Open in IMG/M
3300010044\|Ga0126310_10871411	Not Available	699	Open in IMG/M
3300010044\|Ga0126310_11820797	Not Available	508	Open in IMG/M
3300010045\|Ga0126311_11771380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300010166\|Ga0126306_10932190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300010371\|Ga0134125_12463445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300010375\|Ga0105239_11864505	Not Available	697	Open in IMG/M
3300010399\|Ga0134127_13671455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300012010\|Ga0120118_1014630	Not Available	2193	Open in IMG/M
3300012096\|Ga0137389_10602098	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300012189\|Ga0137388_10940562	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300012189\|Ga0137388_11312260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300012204\|Ga0137374_10826105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300012205\|Ga0137362_10036867	All Organisms → cellular organisms → Bacteria	3913	Open in IMG/M
3300012207\|Ga0137381_11029609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300012207\|Ga0137381_11515616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300012212\|Ga0150985_109182644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	755	Open in IMG/M
3300012212\|Ga0150985_111175039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300012212\|Ga0150985_114591462	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300012363\|Ga0137390_10480346	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300012469\|Ga0150984_100112885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300012469\|Ga0150984_100645619	Not Available	540	Open in IMG/M
3300012469\|Ga0150984_108286823	Not Available	1434	Open in IMG/M
3300012469\|Ga0150984_110801010	Not Available	634	Open in IMG/M
3300012469\|Ga0150984_111321430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	830	Open in IMG/M
3300012469\|Ga0150984_111678209	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300012469\|Ga0150984_112781691	Not Available	552	Open in IMG/M
3300012900\|Ga0157292_10043573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1181	Open in IMG/M
3300012918\|Ga0137396_11114066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300012924\|Ga0137413_10086657	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300012960\|Ga0164301_10693160	Not Available	765	Open in IMG/M
3300012985\|Ga0164308_11821063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300013766\|Ga0120181_1021393	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1645	Open in IMG/M
3300014054\|Ga0120135_1090555	Not Available	535	Open in IMG/M
3300014159\|Ga0181530_10534071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	580	Open in IMG/M
3300014200\|Ga0181526_10336703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300014497\|Ga0182008_10424891	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300014501\|Ga0182024_10343497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1953	Open in IMG/M
3300014968\|Ga0157379_11484814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300015371\|Ga0132258_10905933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2226	Open in IMG/M
3300015371\|Ga0132258_13338734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1104	Open in IMG/M
3300015372\|Ga0132256_102852372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300017943\|Ga0187819_10604375	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300018422\|Ga0190265_10322524	All Organisms → cellular organisms → Bacteria	1623	Open in IMG/M
3300018433\|Ga0066667_11630010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300018433\|Ga0066667_11950986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300018466\|Ga0190268_11942421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300018468\|Ga0066662_11991730	Not Available	608	Open in IMG/M
3300019888\|Ga0193751_1168541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300020070\|Ga0206356_10223920	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300020080\|Ga0206350_11041139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300021420\|Ga0210394_10058293	All Organisms → cellular organisms → Bacteria → Proteobacteria	3363	Open in IMG/M
3300025929\|Ga0207664_11704858	Not Available	552	Open in IMG/M
3300025931\|Ga0207644_11845471	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300025949\|Ga0207667_10398963	Not Available	1400	Open in IMG/M
3300025960\|Ga0207651_10544683	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300025989\|Ga0207998_1027447	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300026330\|Ga0209473_1315772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300026334\|Ga0209377_1290938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300027660\|Ga0209736_1112208	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	737	Open in IMG/M
3300027842\|Ga0209580_10633363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300027862\|Ga0209701_10725264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300027875\|Ga0209283_10792910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300027882\|Ga0209590_10182030	All Organisms → cellular organisms → Bacteria → Proteobacteria	1321	Open in IMG/M
3300027882\|Ga0209590_10437919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	845	Open in IMG/M
3300027889\|Ga0209380_10763787	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300027889\|Ga0209380_10784610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300028381\|Ga0268264_10269645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1590	Open in IMG/M
3300030903\|Ga0308206_1175774	Not Available	530	Open in IMG/M
3300031057\|Ga0170834_109202203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300031058\|Ga0308189_10522060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031092\|Ga0308204_10033120	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300031092\|Ga0308204_10052752	Not Available	994	Open in IMG/M
3300031965\|Ga0326597_10154921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2731	Open in IMG/M
3300032002\|Ga0307416_103847304	Not Available	503	Open in IMG/M
3300032074\|Ga0308173_11516335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300032180\|Ga0307471_103193277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300033513\|Ga0316628_102425553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.08%
Host-Associated	Host-Associated	26.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.69%
Plants	Host-Associated → Plants	25.38%
Aquatic	Environmental → Aquatic	5.38%
Human	Host-Associated → Human	1.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Freshwater	Environmental → Aquatic → Freshwater	3.85%
Digestive System	Host-Associated → Human → Digestive System	1.54%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.77%
Sediment	Environmental → Aquatic → Sediment	0.77%
Roots	Host-Associated → Plants → Roots	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.85%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.08%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.54%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.77%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.08%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.08%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.31%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.77%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.77%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.46%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.15%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.08%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.08%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.08%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.31%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.54%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.77%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.77%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2007427000	Uranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee	Environmental	Open in IMG/M
2124908008	Soil microbial communities from sample at FACE Site Metagenome WIR_Elev2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005903	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_303	Environmental	Open in IMG/M
3300005904	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007821	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025989	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_303 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2007563548	2007427000	Groundwater	VIREGGGLTRGEILDRMGLKGDKTGEMSVSNALTALTKANQVARRDGRYVAA
FWIREl_02553390	2124908008	Soil	MNVIRQSHGLTRGEILEKMGLKGNKSGEMSVSNALTALTKSNQVRRNEERKYVTA
JGI12053J15887_100423356	3300001661	Forest Soil	LVQESDGLTRGEILEHMGLKGDKSGEMSVSNALTALTKSKHVSRRDRKYVAA*
C688J35102_1206687531	3300002568	Soil	ELLNVIRAGNGLTRGEILEKMGLKGNKAGEMSVSNALTALTKGNQVTRRDRKYVAA*
JGI26341J46601_101921181	3300003219	Bog Forest Soil	VIGEQPNGLSRGEIFARMGLKGNKSAEKSVSNALTALTKSNRVFRREGKYVIER*
Ga0063454_1007915071	3300004081	Soil	LLEIIRQSDGLSRGEILERMGLKGDKSGEMSVSNALTALTKSNQVRREDGKYHAAA*
Ga0063454_1019595201	3300004081	Soil	LLELLRQSGGLSRGEILERMGLRGDKSGEMSVSNALTALAKSNQVRREGGNYRATA*
Ga0062589_1028380861	3300004156	Soil	QLLQLIRQHPDGLARKDILEKMGLKGDKSGEMSVSNALTALTKTSQVSRHEGRYRSG*
Ga0062591_1030068871	3300004643	Soil	ARRLAADRQKPDGLTRGEILERMGLKGDKSSEMSVSNALTALTKRNQVSRIGGKYRAA*
Ga0058861_117944451	3300004800	Host-Associated	NGLSRGEILERMGLKGDKSGEMSVSNALTALTKRNEVRREGGRYLPAS*
Ga0058862_127435462	3300004803	Host-Associated	MKVITEGGGLSRGEILEKMRLKGDKSGEMSVSNALTALTKGNQVRRDGGKYHAA*
Ga0066677_103048302	3300005171	Soil	LLRIIKQSHGVTRGEILEKMGLKGNKSGEMSVSNALTALTKNKQVARRDRKYVAS*
Ga0066690_102786784	3300005177	Soil	ELLTIIKQGGGLSRAEILEKMGLKGNKSGEMSVSNALTALIKGNQVTRRDRKYVAA*
Ga0066684_101983715	3300005179	Soil	ELLKLVTGSKGLSRGEILEKMGLKGNKAGEMSVSNALTALTKSKQVARRDRKYVAG*
Ga0066675_111823182	3300005187	Soil	EELLKLITGSKGLSRGEILEHMGLKGNKAGEMSVSNALTALTKSKQVARRDRKYVAA*
Ga0065715_107580911	3300005293	Miscanthus Rhizosphere	SIINQSHGLSRGEILDKMGLKGNKTGEMSVSNALTALTKSKQVIRRDRKYIAS*
Ga0070691_102405752	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	QLIRQHPDGLARKDILEKMGLKGDKSGEMSVSNALTALTKTNQVSRHEGKYRFA*
Ga0070679_1006305982	3300005530	Corn Rhizosphere	GLARKDILEKMGLKGDKSGEMSVSNALTALTKTNQVSRHEGKYRFA*
Ga0070672_1018162061	3300005543	Miscanthus Rhizosphere	LLRVIGEGNGLTRGEILQKMGLKGDKSGEMSISNALTALAKGNQVRREGGKYHRT*
Ga0066692_101592061	3300005555	Soil	NQSHGLSRGEILDKMGLKGNKSGEMSVSNALTALTKSKQVTRRDRKYVAS*
Ga0066670_107921932	3300005560	Soil	HGLSRGEILEKMGLKGNKSGEMSVSNALTALTKSKQVVRRDRKYVAG*
Ga0070664_1003972931	3300005564	Corn Rhizosphere	PDGLTRGEILERMGLKGDKSSEMSVSNALTALTKRNQVSRIGGKYRAA*
Ga0066708_104181992	3300005576	Soil	VGAVEGSRHEELLKLIAGNKGLSQGEILEKIGLKGNKAGEMSVSNALTALTKSKQVARKDRKYVAA*
Ga0066654_104498202	3300005587	Soil	REELLRIINQSHGLSRGEILDKMGLKGNKTGEMSVSNALTALTKSKQVIRRDRKYIAS*
Ga0068856_1015376361	3300005614	Corn Rhizosphere	LIGDNPDGLTRGEILERMGLKGDKSGEMSVSNALSALTKRNQLSRTGGKYRAA*
Ga0068859_1026105401	3300005617	Switchgrass Rhizosphere	DGLTRGEILERMGLKGDKSSEMSVSNALTALTKRNQVSRIGGKYRAA*
Ga0068861_1011137951	3300005719	Switchgrass Rhizosphere	VGLKRGEILERVGLKGDKAGEMSVSNALTALTKSGQVFRTEGKFVAV*
Ga0068863_1012603761	3300005841	Switchgrass Rhizosphere	SRGEILERMGLKGDKSGEMSVSNALTALTKRNEVRREGGRYLPAS*
Ga0068860_1004438811	3300005843	Switchgrass Rhizosphere	LAADRQKPDGLTRGEILERMGLKGDKSSEMSVSNALTALTKRNQVSRIGGKYRAA*
Ga0075279_100906923	3300005903	Rice Paddy Soil	SSGVSRGEILDQMGLKGDKSGEMSVSNALTALTKSNQVSRREGKYFASA*
Ga0075280_100141771	3300005904	Rice Paddy Soil	LSRGEILEKMGLKGDKSGEMSVSNALTALTKSQHVVRREGKYITA*
Ga0070766_112948341	3300005921	Soil	GLKRGEILERMGLKGDKAGEMSVSNALTALTESNRVSRHEGKYFAQGG*
Ga0075024_1009131711	3300006047	Watersheds	KRGEILERMGLKGDKAGEMSVSNALTALTKSNQVSRHEGKYFAQGG*
Ga0082029_10604991	3300006169	Termite Nest	SDGISRGELLERMGLKGDKSGEMSVSNALTALTKSNQVHREGGKYRAAM*
Ga0070765_1013499592	3300006176	Soil	VIRENPDGLRRGEILERMGLKGDKAGEMSVSNALTALTKSNQVSRHEGKYFAQGG*
Ga0068871_1011470572	3300006358	Miscanthus Rhizosphere	LMNVIRQSQGLARGEILEKMGLKGNKSGEMSISNALAALTKSNQVRRNEGRKYVTA*
Ga0079222_108966502	3300006755	Agricultural Soil	LELIWQGDGLSRGELLERMGLKGDKSGALSVSNALTALTKSNQVRREDGKYRAM*
Ga0066665_111463051	3300006796	Soil	RREELLRIINQSHGLSRGEILDKMGLKGNKSGEMSVSNALTALTKSKQVTRRDRKYVAS*
Ga0066660_105683252	3300006800	Soil	TRGEILEKMGLKGNKSGEMSVSNALTALTKKKQVSRRDRKYLAS*
Ga0079221_102099371	3300006804	Agricultural Soil	LNIIKQSHGLTRGEILDKMGLKGNKSGEMSVSNALTALSKSKQVARRDRKYVVAS*
Ga0075425_1027993951	3300006854	Populus Rhizosphere	PDGLARKDILEKMGLKGDKSGEMSVSNALTALTKTNQVSRHEGKYRFA*
Ga0075434_1016903132	3300006871	Populus Rhizosphere	TGEGVTRGEILRTMGLHGDKLSEMSVSNALTALTKTNQVSRHEGKYRFA*
Ga0073928_1000255611	3300006893	Iron-Sulfur Acid Spring	MALIREQGGLTRGQLLEKMGVKGNKSGEMSVSNALTALTKSKQLRRAEGRKYVAA*
Ga0104323_1190002	3300007821	Soil	GLIRGEILERMGLKGDKPGEMSVSNALTALTKANQVMRRDGRYIAA*
Ga0066710_1016436331	3300009012	Grasslands Soil	KNEVGLSRGEILESLGLKGDKSGEQSVSNALTALRKGGRVTSKEGRYVTV
Ga0099828_117313871	3300009089	Vadose Zone Soil	ETAAGLTRGEILERMGLKGNKTGEMSVSNALTALTKAGQVRRDDGKYRIGG*
Ga0099792_109792981	3300009143	Vadose Zone Soil	ITGSKGLTRGEILEKMRLKGNKAGEMSVSNALTALTKSKQVSRRDRKYMAA*
Ga0126312_104085073	3300010041	Serpentine Soil	GLSRGEILEKMGLKGDKAGEMSVSNALTALSKSSQVRREGGKYRISV*
Ga0126310_108714111	3300010044	Serpentine Soil	MRENPNGLRRGEILERMGLKGDKAGEMSVSNALTALTKGNQVSRHEGRYFAQGG*
Ga0126310_118207971	3300010044	Serpentine Soil	ALLELIRQGDGLSRGELLERMDLKGDKSGEMSVSNALTALTKSNQVHREGGKYRAM*
Ga0126311_117713802	3300010045	Serpentine Soil	GLSRGEILDRMGLKGDKSGEMSISNALTALTKRNEVRREGGKYLPAS*
Ga0126306_109321901	3300010166	Serpentine Soil	VIRQGNGLSRGEILEKMGLKGDKSGEMSVSNALTALSKTNQVRRDGGKIPRGLNC*
Ga0134125_124634451	3300010371	Terrestrial Soil	SDGLSRGEILERMGLKGDKSSEMSVSNALTALTKSNQVHREGGKYRAAT*
Ga0105239_118645052	3300010375	Corn Rhizosphere	LSRGELLERMGLKGDKSGEMSVSNALTALTKSNQVRREDGKYRAAT*
Ga0134127_136714551	3300010399	Terrestrial Soil	LLEIIRQSDGLSRGEILERMGLKGDKAGEMSVSNALTALTKSNQVQRDSGKYRATT*
Ga0120118_10146304	3300012010	Permafrost	LTRGEILEKMGLKGDKSGEMSISNALTALTKANQVSRRDGKYTSA*
Ga0137389_106020983	3300012096	Vadose Zone Soil	REGGGLTRGEIRDKMGLKGNKSGEMSVSNALTALTKGSQVARRDGKYVAA*
Ga0137388_109405621	3300012189	Vadose Zone Soil	LQLIRNNPSALTRGEIIERMGLKGNKSGEMSVSNALTALTKAGQVSRRDGKYVAT*
Ga0137388_113122602	3300012189	Vadose Zone Soil	QLLQVIKDGHGLSRGEILEKMGLKGNKSGEMSVSNALTALTKANQVSRREGKYVAA*
Ga0137374_108261051	3300012204	Vadose Zone Soil	EALLQLIGQNPDGLSRGEILERMGLKGDKSGEMSVSNALTALTKGNQVSRSGGKYRGA*
Ga0137362_100368671	3300012205	Vadose Zone Soil	LTRGEILERMGLKGDKSGEMSVSNALTALTKANQVVRRDGRYAAA*
Ga0137381_110296091	3300012207	Vadose Zone Soil	LLRVIREGHGLSRGEILERMGLKGNKSGEMSVSNALTGLTKANQVARRDGKYVAA*
Ga0137381_115156162	3300012207	Vadose Zone Soil	MQVIREQPSGLTRGEILGRMGLKGDKSGEMSVSNALTALTKANQVIRRDGRYVAA*
Ga0150985_1091826441	3300012212	Avena Fatua Rhizosphere	NGLSRGEILERMGLKGDKSGEMSVSNALTALSKRNQVRREGGKYYASEAA*
Ga0150985_1111750391	3300012212	Avena Fatua Rhizosphere	MEVIKSAAGLSRAEILQKMGLKGDKSGEMSVSNALTALTKSNQVRRDGGKYHAA*
Ga0150985_1145914623	3300012212	Avena Fatua Rhizosphere	GLTRGEILEKMGLKGNKSGEMSVSNALTALTKNNQVRRDGRKYLAA*
Ga0137390_104803464	3300012363	Vadose Zone Soil	VIRDGNGLSRGEILEKMGLKGNKSGEMSVSNALTALTKANQVSRRDGKYHAA*
Ga0150984_1001128852	3300012469	Avena Fatua Rhizosphere	GLSRGEILERMGLKGDKSGEMSVSNALTALTKRNQVRRDGGKYHPAS*
Ga0150984_1006456192	3300012469	Avena Fatua Rhizosphere	KRGEILERMALKGDKAGERSVSNALTALTKSGQVSRREGKYVAA*
Ga0150984_1082868234	3300012469	Avena Fatua Rhizosphere	IREGNGLSRGEILERMGLKGDKSGEMSVSNALTALTKRNQVRREGGKYLPAA*
Ga0150984_1108010101	3300012469	Avena Fatua Rhizosphere	TRGEILEQMGLKGDKSGEMSVSNALTALAKTSQVTRRDGRYVTG*
Ga0150984_1113214302	3300012469	Avena Fatua Rhizosphere	DGLSRGEILERMGLKGDKSGEMSVSNALTALTKSNQVFRDGGKYRAAM*
Ga0150984_1116782092	3300012469	Avena Fatua Rhizosphere	GLSRGEIRERMGLKGDKSGEMSVSNALTTLTKSNQVHREGGKYRATK*
Ga0150984_1127816912	3300012469	Avena Fatua Rhizosphere	IRDNPDGLRRGEILERMGLKGDKAGEMSVSNALTALTKSNQVSRQEGRYVVQGG*
Ga0150984_1154181301	3300012469	Avena Fatua Rhizosphere	RDELLNVIRAGNGLTRGEILEKMGLKGNKAGEMSVSNALTALTKGNQVTRRDRKYVAA*
Ga0157292_100435731	3300012900	Soil	KLIRGETGLSRGEILERMGIKGDKSGEMSVSNALTALMEENQVRLKGGKYRAR*
Ga0137396_111140662	3300012918	Vadose Zone Soil	IKDGDGLSRAEILDKMGLKGNKSGEMSVSNALTALTKANQVARRDGKYLAN*
Ga0137413_100866571	3300012924	Vadose Zone Soil	DAILKLVQESDGLTWGEILEHMGLKGDKSGEMSVSNALTALTKSKQVSRRDRKYVAA*
Ga0137419_118160131	3300012925	Vadose Zone Soil	RGSRRDELLKVIRAGHGLTRGEILEKMGLKGNKSGEMSVSNALTALTKSKQVARKDRKYVAG*
Ga0137416_115218161	3300012927	Vadose Zone Soil	KRDELLKGYQGGNGLTRGEILAKMGLKGNKVGEMSVSNALTALTKANQVTRRDRKYVAA*
Ga0164301_106931601	3300012960	Soil	QSDGLSRGEILERMGLKGDKGGETSVSNALTALTKSNQLRREGGKYRTAA*
Ga0164308_118210631	3300012985	Soil	QSDGLSRGEILERMGLKGDKAGEMSVSNALTALTKNNQVHRKDGKYRAAT*
Ga0120127_101117662	3300013503	Permafrost	EQLLRVIKDAQGLTRGEILEKMGLKGDKAGEMSVSNALTALTKAGQVMRDAARKYVGV*
Ga0120181_10213931	3300013766	Permafrost	IKDGHGLTRGEILEKMGLKGNKAGEMSVSNALTALTKGNQVARRDGKYLAA*
Ga0120135_10905551	3300014054	Permafrost	MAALADIPHGLTRGELLEKMGFKGNKSGEMSVSNALTALTKSNQVARKDGRY
Ga0181530_105340711	3300014159	Bog	RDGIMQVIKENPSGLTRGEILEKMGLKGDKSGEMSVSNALTALSKGNQITRQDGKYVSATT*
Ga0181526_103367033	3300014200	Bog	LQLIKDNPGGLIRGEILERMGLKGDKSGEMSVSNALTALTKANQITRRDGRYIAAA*
Ga0182008_104248911	3300014497	Rhizosphere	NLIRQGNGLSRGEILERMGLKGDKSGEMSVSNALTALTKRNQVRRDGGKYHPAS*
Ga0182024_103434971	3300014501	Permafrost	IKENPGGLTRGEILEKMGLRGDKSGEMSVSNALTALTKGKQVRRDGGKYLAA*
Ga0157379_114848142	3300014968	Switchgrass Rhizosphere	LNIIRQGGGLSRGEILTKMGLKGDKSGEMSVSNALTALTKSNQVGRNAERKYVAA*
Ga0132258_109059331	3300015371	Arabidopsis Rhizosphere	NGVTRGEILEQMGLKGDKSGEMSVSNALTALAKTSQVTRRDGRYVTG*
Ga0132258_133387343	3300015371	Arabidopsis Rhizosphere	MNVIRQGHGLTRGEILEKMGLKGNKSGEMSVSNALTALTKSNQVQRNEERKYVST*
Ga0132256_1028523721	3300015372	Arabidopsis Rhizosphere	LNVIRQGDGPTRGEILEKMGLKGNKSGEMSVSNALTALMKTMHVRREGGKYHSA*
Ga0187819_106043751	3300017943	Freshwater Sediment	NPNGLSRGEIFECMGLKGNKSAEKSVSNALTALTKSNQVSRREGKYVIGG
Ga0190265_103225242	3300018422	Soil	MNVIRQGHGLTRGDILEKLGLKGNKSGEMSVSNALTALTKSNQVRRDEERKYVAA
Ga0066667_116300101	3300018433	Grasslands Soil	LLQIIKESRGLTRGEILEKMGLKGSKSGEMSVSNALTALTKSNQVRRENRKYITP
Ga0066667_119085691	3300018433	Grasslands Soil	RDELLNVIRAGNGLTRGEILEKMGLKGNKAGEMSVSNALTALTKGNQVTRRDRKYVAA
Ga0066667_119509863	3300018433	Grasslands Soil	LKVIREGGGLSRGQILDKMGLKGNKSGEMSVSNALTALTKTNQVARREGKYVIA
Ga0190268_119424211	3300018466	Soil	MNLIRQGHGLTRGEILEKMGLKGNKSGEMSVSNALTALTKSNQLRRNEE
Ga0066662_119917302	3300018468	Grasslands Soil	LPLGLVIRQSDGLSRGEILERMGLKGDKSSEMSVSNALTALTKSNQVHREGGKYRAM
Ga0193751_11685412	3300019888	Soil	LMQVIKDNPSGLTRGEILDRIGLKGNKSGEMSVSNALTALTTANQVTRREGRYVAA
Ga0206356_102239201	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	EQLLQLIRQHPDGLARKDILEKMGLKGDKSGEMSVSNALTALTKTNQVSRHEGKYRFA
Ga0206350_110411392	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	FTRGELLAKMDLKGNKAGEMSVSNALTALTKAGVVVRRDGKYIGGVG
Ga0210394_100582934	3300021420	Soil	MQTIKDSPSGLTRGEILERMGLKGDKAGATSISNALTALTKANQVSRRDGRYVAA
Ga0207664_117048581	3300025929	Agricultural Soil	QLIRQHPEGLARKDILEKMGLKGDKSGEMSVSNALTALTKTSQVSRHEGRYRTG
Ga0207644_118454712	3300025931	Switchgrass Rhizosphere	GLSRGELLERMGLKGDKSGEMSVSNALTALTKSNQVHREGGKYRAM
Ga0207667_103989631	3300025949	Corn Rhizosphere	ARKDILEKLGLKGDKSGEMSVSNALTALTKTNQVSRHEGKYRFA
Ga0207651_105446832	3300025960	Switchgrass Rhizosphere	LIRQHPDGLARKDILEKMGLKGDKSGEMSVSNALTALTKTSQVSRHEGRYRSG
Ga0207998_10274473	3300025989	Rice Paddy Soil	ANSSGVSRGEILDQMGLKGDKSGEMSVSNALTALTKSNQVSRREGKYFASA
Ga0209473_13157721	3300026330	Soil	LLQIIKAGHGLSRGEILEKLGLKGNKSGEMSVSNALTALAKSKQVVRRDRKYVAG
Ga0209377_12909381	3300026334	Soil	QSHGLSRGEILDKMGLKGNKSGEMSVSNALTALTKSKQVTRRDRKYVAS
Ga0209736_11122083	3300027660	Forest Soil	MQVIKDNPSGLTRGEILERMGLKGDKSGEMSVSNALTALTKTNHVTR
Ga0209580_106333631	3300027842	Surface Soil	GLKRAEILERMGLKGNKSGEMSVSNALTALTKSGQVVRVEGRYRSA
Ga0209701_107252641	3300027862	Vadose Zone Soil	EALMQVIKDNPTGLTRGEILDRMGLKGDKSGEMSVSNSLTAMTKAKQVMRRDGRYVAA
Ga0209283_107929102	3300027875	Vadose Zone Soil	PSGLTRGEILDRMGLKGDKTGEMSVSNALTALTKANQVTRRDGRYIAA
Ga0209590_101820301	3300027882	Vadose Zone Soil	NPAGLSRGELLEKMGLKGNKSGEMSVSNALTALTKAGQVHRQDGKYRPAA
Ga0209590_104379192	3300027882	Vadose Zone Soil	SVTRGEIFQRMGLKGDKSGEMSVSNALTALTKANQVIRRDGPYSAA
Ga0209380_107637871	3300027889	Soil	LIQVIKDNPSGLTRGEILARMGLKGDKSGEMSISNALTALTKANQVTRRDGR
Ga0209380_107846102	3300027889	Soil	NGLKRGEILERMGLKGDKAGEMSVSNALTALTESNRVSRHEGKYFAQGG
Ga0268264_102696451	3300028381	Switchgrass Rhizosphere	RLAADRQKPDGLTRGEILERMGLKGDKSSEMSVSNALTALTKRNQVSRIGGKYRAA
Ga0308206_11757741	3300030903	Soil	GGGLSRAEILTKMGLKGDKSGEMSVSNALTALTKSNQVRRDGGKYHAA
Ga0170834_1092022032	3300031057	Forest Soil	QVIKDGHGLTRGEILEKMGLKGNKSGEMSVSNALTALTKANQVARHDGKYVAA
Ga0308189_105220602	3300031058	Soil	DGLSRGELLERMGLKGDKSGEMSVSNALTALTKSNQVHREGGKYRAM
Ga0308204_100331201	3300031092	Soil	ELLNLIRGGNGLSRGEILERMGLKGDKSGEMSVSNALTALTKRNEVRREGGRYLPAS
Ga0308204_100527521	3300031092	Soil	ELLNLIRGGNGLSRGEILERMGLKGDKSGEMSVSNALTALTKRNEVRRDGGKYHSA
Ga0326597_101549213	3300031965	Soil	VVDLIKQHPGGLSRGEILNLMGLKGDKSGEQSVSNALLALTKQNQLGRREGKYVPA
Ga0307416_1038473042	3300032002	Rhizosphere	RREAIIEMLRKAGQGLSRGDLLQSMGLKGDKSGEMAVSNALTALFKGGQVRREGRKYHAA
Ga0308173_115163352	3300032074	Soil	SQGLSRGEILEKMGLKGNKSREMSISNALTALLKSSQIRRNDQKKYVAA
Ga0307471_1031932772	3300032180	Hardwood Forest Soil	QLLQVIKEGDGLTRGEILEKMGLKGNKQGEMSVSNALTALTKANQVARHEGKYVAA
Ga0316628_1024255532	3300033513	Soil	LMQVIKDNPSGLTRGEILDRMGLKGDKSGEMSVSNALTALTKANQVIRRDGRYVAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063064

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences