Metagenome / Metatranscriptome Family F063578

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063578
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	58 residues
Representative Sequence	MDKLDPVNPPRDEDDEASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKKTNGAA
Number of Associated Samples	74
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	27.56 %
% of genes near scaffold ends (potentially truncated)	20.93 %
% of genes from short scaffolds (< 2000 bps)	62.79 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.674 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (24.806 % of family members)
Environment Ontology (ENVO)	Unclassified (55.814 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (81.395 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.67% β-sheet: 0.00% Coil/Unstructured: 52.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00989	PAS	34.88
PF05940	NnrS	29.46
PF02518	HATPase_c	6.98
PF00196	GerE	5.43
PF01786	AOX	2.33
PF01042	Ribonuc_L-PSP	1.55
PF10677	DUF2490	1.55
PF13545	HTH_Crp_2	1.55
PF03595	SLAC1	1.55
PF14815	NUDIX_4	0.78
PF00072	Response_reg	0.78
PF00582	Usp	0.78
PF00317	Ribonuc_red_lgN	0.78
PF00155	Aminotran_1_2	0.78
PF01243	Putative_PNPOx	0.78
PF02826	2-Hacid_dh_C	0.78
PF03884	YacG	0.78
PF02082	Rrf2	0.78
PF07883	Cupin_2	0.78
PF14710	Nitr_red_alph_N	0.78
PF13442	Cytochrome_CBB3	0.78
PF02867	Ribonuc_red_lgC	0.78
PF03466	LysR_substrate	0.78
PF07885	Ion_trans_2	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG3213	Nitric oxide response protein NnrS	Signal transduction mechanisms [T]	29.46
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	1.55
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.55
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	1.55
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.78
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.78
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.78
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.78
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.78
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.78
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.78
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.78
COG3024	Endogenous inhibitor of DNA gyrase, YacG/DUF329 family	Replication, recombination and repair [L]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.67 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.67 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.67 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	84.50 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	71.32 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	58.91 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	52.71 %
Unclassified	root	N/A	2.33 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	41.09 %
Unclassified	root	N/A	2.33 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.78 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.78 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	3.10 %
Unclassified	root	N/A	2.33 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	1.55 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	1.55 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.78 %
Sphingomonas sinipercae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sinipercae	0.78 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.78 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	3.10 %
Unclassified	root	N/A	2.33 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	1.55 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	1.55 %
Novosphingobium sp. FKTRR1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. FKTRR1	0.78 %
Sphingomonas sinipercae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sinipercae	0.78 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_164673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1612	Open in IMG/M
3300002067\|JGI24735J21928_10151018	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300002067\|JGI24735J21928_10214670	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300003267\|soilL1_10023305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1090	Open in IMG/M
3300003319\|soilL2_10006215	All Organisms → cellular organisms → Bacteria → Proteobacteria	2625	Open in IMG/M
3300003319\|soilL2_10035392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4963	Open in IMG/M
3300003321\|soilH1_10005215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3618	Open in IMG/M
3300003321\|soilH1_10005799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13926	Open in IMG/M
3300003321\|soilH1_10042255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4318	Open in IMG/M
3300003321\|soilH1_10093779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1202	Open in IMG/M
3300003321\|soilH1_10135971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2516	Open in IMG/M
3300003321\|soilH1_10235676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1660	Open in IMG/M
3300003324\|soilH2_10029919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2962	Open in IMG/M
3300003324\|soilH2_10033040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4646	Open in IMG/M
3300003324\|soilH2_10078839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2168	Open in IMG/M
3300004463\|Ga0063356_100877063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1264	Open in IMG/M
3300005093\|Ga0062594_100209877	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300005327\|Ga0070658_10000933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	25045	Open in IMG/M
3300005327\|Ga0070658_10002947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14112	Open in IMG/M
3300005327\|Ga0070658_10005505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	10279	Open in IMG/M
3300005327\|Ga0070658_10036625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3954	Open in IMG/M
3300005327\|Ga0070658_10098279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2418	Open in IMG/M
3300005327\|Ga0070658_11267644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	640	Open in IMG/M
3300005327\|Ga0070658_11664920	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300005329\|Ga0070683_100060893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3509	Open in IMG/M
3300005329\|Ga0070683_100468063	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M
3300005329\|Ga0070683_100542612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	1112	Open in IMG/M
3300005329\|Ga0070683_102172113	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005336\|Ga0070680_100000576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	25229	Open in IMG/M
3300005336\|Ga0070680_100102217	All Organisms → cellular organisms → Bacteria	2380	Open in IMG/M
3300005336\|Ga0070680_101703313	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005338\|Ga0068868_101000084	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300005339\|Ga0070660_100070686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2724	Open in IMG/M
3300005339\|Ga0070660_100089020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2432	Open in IMG/M
3300005339\|Ga0070660_100108930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2202	Open in IMG/M
3300005339\|Ga0070660_100628387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	899	Open in IMG/M
3300005344\|Ga0070661_100129298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1896	Open in IMG/M
3300005344\|Ga0070661_100171396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1648	Open in IMG/M
3300005344\|Ga0070661_100429555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1048	Open in IMG/M
3300005344\|Ga0070661_100843134	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300005345\|Ga0070692_10090966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1659	Open in IMG/M
3300005366\|Ga0070659_100328942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1279	Open in IMG/M
3300005366\|Ga0070659_100521864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1014	Open in IMG/M
3300005435\|Ga0070714_100696697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	980	Open in IMG/M
3300005457\|Ga0070662_101556823	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005459\|Ga0068867_101751664	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005530\|Ga0070679_101916764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300005535\|Ga0070684_100057467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3397	Open in IMG/M
3300005539\|Ga0068853_100062767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3216	Open in IMG/M
3300005539\|Ga0068853_101164482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	744	Open in IMG/M
3300005547\|Ga0070693_100295874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1089	Open in IMG/M
3300005563\|Ga0068855_100616922	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300005563\|Ga0068855_101439354	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005614\|Ga0068856_100010677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	8923	Open in IMG/M
3300005614\|Ga0068856_100308675	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300005614\|Ga0068856_100449146	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300005614\|Ga0068856_101023444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	844	Open in IMG/M
3300005616\|Ga0068852_102487638	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300005616\|Ga0068852_102634723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300005841\|Ga0068863_100036130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4706	Open in IMG/M
3300006755\|Ga0079222_10405027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	952	Open in IMG/M
3300006854\|Ga0075425_100814767	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300006871\|Ga0075434_101789151	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300006871\|Ga0075434_101893329	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300006904\|Ga0075424_100671886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1106	Open in IMG/M
3300007076\|Ga0075435_100255315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1493	Open in IMG/M
3300009029\|Ga0066793_10645534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	602	Open in IMG/M
3300009551\|Ga0105238_11468344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300010051\|Ga0133939_1001834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	323682	Open in IMG/M
3300012354\|Ga0137366_10136013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1853	Open in IMG/M
3300012512\|Ga0157327_1017019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	776	Open in IMG/M
3300012951\|Ga0164300_10472772	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300013100\|Ga0157373_11028138	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300013102\|Ga0157371_10133710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1765	Open in IMG/M
3300013102\|Ga0157371_10616607	All Organisms → cellular organisms → Bacteria → Proteobacteria	808	Open in IMG/M
3300013104\|Ga0157370_10413256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1242	Open in IMG/M
3300013105\|Ga0157369_10184497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2194	Open in IMG/M
3300013772\|Ga0120158_10102531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1715	Open in IMG/M
3300014497\|Ga0182008_10796291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. FKTRR1	548	Open in IMG/M
3300015371\|Ga0132258_10161296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5390	Open in IMG/M
3300015371\|Ga0132258_10243004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4395	Open in IMG/M
3300015371\|Ga0132258_10413666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3353	Open in IMG/M
3300015371\|Ga0132258_10417630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3337	Open in IMG/M
3300020069\|Ga0197907_10732326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	610	Open in IMG/M
3300020082\|Ga0206353_11713040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	548	Open in IMG/M
3300020082\|Ga0206353_11854543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	577	Open in IMG/M
3300020082\|Ga0206353_12067816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1011	Open in IMG/M
3300025321\|Ga0207656_10365898	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300025903\|Ga0207680_10651225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	754	Open in IMG/M
3300025903\|Ga0207680_11206559	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300025904\|Ga0207647_10081016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1946	Open in IMG/M
3300025904\|Ga0207647_10249580	Not Available	1018	Open in IMG/M
3300025904\|Ga0207647_10340382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	850	Open in IMG/M
3300025909\|Ga0207705_10001550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	18229	Open in IMG/M
3300025909\|Ga0207705_10031672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3776	Open in IMG/M
3300025909\|Ga0207705_10050034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	3008	Open in IMG/M
3300025909\|Ga0207705_10176304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1611	Open in IMG/M
3300025912\|Ga0207707_10050896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	3607	Open in IMG/M
3300025917\|Ga0207660_10000159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	42039	Open in IMG/M
3300025917\|Ga0207660_11406721	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300025919\|Ga0207657_10001311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	26393	Open in IMG/M
3300025919\|Ga0207657_10071168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2945	Open in IMG/M
3300025919\|Ga0207657_10164591	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300025920\|Ga0207649_10441828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	980	Open in IMG/M
3300025920\|Ga0207649_11033685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300025921\|Ga0207652_10021673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5304	Open in IMG/M
3300025923\|Ga0207681_10084574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2249	Open in IMG/M
3300025932\|Ga0207690_10028740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3526	Open in IMG/M
3300025932\|Ga0207690_10121227	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300025933\|Ga0207706_11425956	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300025944\|Ga0207661_10048548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3374	Open in IMG/M
3300025944\|Ga0207661_10537558	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300025944\|Ga0207661_11846139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300025949\|Ga0207667_11190655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300025949\|Ga0207667_12071286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	528	Open in IMG/M
3300025981\|Ga0207640_10663340	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300026041\|Ga0207639_10971547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	795	Open in IMG/M
3300026067\|Ga0207678_11754663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300026078\|Ga0207702_11943243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300026089\|Ga0207648_11563027	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300026116\|Ga0207674_10009370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	11198	Open in IMG/M
3300026142\|Ga0207698_12734525	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300027725\|Ga0209178_1280768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sinipercae	609	Open in IMG/M
3300028041\|Ga0247719_1003235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5808	Open in IMG/M
3300030511\|Ga0268241_10002213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3516	Open in IMG/M
3300031938\|Ga0308175_100019770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5342	Open in IMG/M
3300033412\|Ga0310810_10112088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3236	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	62.79%
Environmental	Environmental	36.43%
Engineered	Engineered	0.78%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	62.79%
Terrestrial	Environmental → Terrestrial	36.43%
Wastewater	Engineered → Wastewater	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.36%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.78%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	27.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	23.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.93%
Loam	Environmental → Terrestrial → Soil → Loam	14.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.10%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	27.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	23.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.10%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.78%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	24.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	18.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	12.40%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	9.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.10%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.78%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.78%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Industrial Wastewater	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010051	Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England. Combined Assembly of Gp0151195, Gp0151196	Engineered	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028041	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_D	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_03035480	2199352024	Soil	MDKLDPAIPRGEDEAATDLARRLARYRRRVEAEGRPRSLRLIDRAIKDAGKKASGD
JGI24735J21928_101510181	3300002067	Corn Rhizosphere	MMDKIEPGTANDEDESAAGDLACRLARYRRRVEAEGRPRSLRVIERAIKDAGRKSKPRG*
JGI24735J21928_102146701	3300002067	Corn Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIAD
soilL1_100233052	3300003267	Sugarcane Root And Bulk Soil	MDKLDPVNPPRDEDDEASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKKTNGAA*
soilL2_100062152	3300003319	Sugarcane Root And Bulk Soil	MDKLDPVNPPRDEDDDASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKGAGG*
soilL2_100353923	3300003319	Sugarcane Root And Bulk Soil	MDKSNPITPTNHDEGDASDLARRLARYRRRVEAEGRPRSVKLIDRAIKDADKKADSGE*
soilH1_100052152	3300003321	Sugarcane Root And Bulk Soil	MDKLDPIIPPTDEDESASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKREKR*
soilH1_100057996	3300003321	Sugarcane Root And Bulk Soil	MNKFDPAIPPDREEGNASDLARRLARYRRRVEAEGRPRSVRLIDRAIEDADKKPDGRE*
soilH1_100422553	3300003321	Sugarcane Root And Bulk Soil	MDKLDPTIPPHNEDEATSDLARRLSRYRRRVAAEGRPRSLKLIDRAIEDAGRKAADSD*
soilH1_100937792	3300003321	Sugarcane Root And Bulk Soil	MDKLDPIPPRDEDDDASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKNANGAG*
soilH1_101359713	3300003321	Sugarcane Root And Bulk Soil	MGQMTDKPEPATPQSDESAEADLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKKAADGA*
soilH1_102356762	3300003321	Sugarcane Root And Bulk Soil	MTEKLDPPAQPEDHESAESDLARRLERYRRRVEAEGRPRSVKVIDRAIKDADKKTRGAA*
soilH2_100299193	3300003324	Sugarcane Root And Bulk Soil	MEKPEPIVPAEGEDSPATDLARRLARYRRRIEAEGRPRSVRFIDRAIEDAGKKAGSGE*
soilH2_100330403	3300003324	Sugarcane Root And Bulk Soil	MDKLDPALPPRDEDEAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKSSGER*
soilH2_100788392	3300003324	Sugarcane Root And Bulk Soil	MDKPDPVIPPRDEAEAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKDAKGAD*
Ga0063356_1008770632	3300004463	Arabidopsis Thaliana Rhizosphere	MTDKLDRGTRQNGEGKAESDLARRLERYRRRVEAEGRPKSVKFIDRAIEDADKDARGAA*
Ga0062594_1002098772	3300005093	Soil	MSDKPDSSIPAEGNDAADSDLARRLARYRRRVEAEGRPRSVKLIDRAIEDAGRKASGAA*
Ga0070658_1000093323	3300005327	Corn Rhizosphere	MDKLDPVNPPPSEDEAASDLARRLARYRRRVAAEDRPRSVKVIDRAINDADGKPKRDQR*
Ga0070658_1000294721	3300005327	Corn Rhizosphere	MDKIKPKSTEDQESAAADLARRLARYRRRVAAEGRPKSVRVIDRAIEDADKAAKSPK*
Ga0070658_100055059	3300005327	Corn Rhizosphere	MSEEPVNPRQDDESADLAKRLARYRRRVAAEGRPRSVRVIDRAIEDAAKKPGGRK*
Ga0070658_100366254	3300005327	Corn Rhizosphere	MTEKLDPVPVPEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIADADTKARGAA*
Ga0070658_100982792	3300005327	Corn Rhizosphere	MDKLDPTISASNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAIKDADAKPKRDKR*
Ga0070658_112676442	3300005327	Corn Rhizosphere	MDGMTDKLDPSALSQASETAETDLARRLARYRRRVEAEGRPRSVKLIDRAIEDAGNKARGAA*
Ga0070658_116649201	3300005327	Corn Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIADAVRKARGPA*
Ga0070683_1000608936	3300005329	Corn Rhizosphere	MDKLDPTISASNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAIKDADGKPKRDKR*
Ga0070683_1004680632	3300005329	Corn Rhizosphere	MDKLDPILAPGNEDEATSDLARRLSRYRRRVAAEGRPRSLKLIDRAIEDAGRKAADSD*
Ga0070683_1005426122	3300005329	Corn Rhizosphere	MENIEPATPNEEESAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKGKLHE*
Ga0070683_1021721132	3300005329	Corn Rhizosphere	MDKFDPSIPPRDDDEGTSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSANGAG*
Ga0070680_10000057614	3300005336	Corn Rhizosphere	MEKPDPATTKDEHSAECDLARRLARYRLRVEAEGRPRSLKLIDRAIEDADRKSRGAA*
Ga0070680_1001022173	3300005336	Corn Rhizosphere	MDKFDPTIPPTDEDESASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKREQR*
Ga0070680_1017033131	3300005336	Corn Rhizosphere	MDKFDPSIPPRDNDEGASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSANGAG*
Ga0068868_1010000842	3300005338	Miscanthus Rhizosphere	MDDVDPAAPGPEEDSPASDLARRLARYRRRIEAEGRPRSVRVLDQAIKDAGKDK*
Ga0070660_1000706864	3300005339	Corn Rhizosphere	MDKFDPATPLPEDDEAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKS*
Ga0070660_1000890203	3300005339	Corn Rhizosphere	MEQPDPTMSSEVQESAESDLERRLARYRRRVEAEGRPRSVKLIDQAIEDAAQKARGAA*
Ga0070660_1001089302	3300005339	Corn Rhizosphere	MDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKREQR*
Ga0070660_1006283872	3300005339	Corn Rhizosphere	MKKLDPLAPPPDAPGEDENASDLARRLARYRRRVEAEGRPRSVKVIDRAIKDAGGKSKRDR*
Ga0070661_1001292982	3300005344	Corn Rhizosphere	MTKKLDSPALPDRDDSSGSDLARRLARYRRQVEAEGRPHSLKLIDRAIEAEDGKARDAS*
Ga0070661_1001713962	3300005344	Corn Rhizosphere	MTDKPDPAAMPTEDEDAESDLARRLARYRRRVEAEGRPRSVKFIDRAIEDADKEARGAA*
Ga0070661_1004295552	3300005344	Corn Rhizosphere	VADAITCRVTMDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKREQR*
Ga0070661_1008431342	3300005344	Corn Rhizosphere	MTAKLDPPALPEAEDGGESDLARRLARYRRRVEAEGRPRSLRLIDRAIEDADKQARGAA*
Ga0070692_100909662	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKRDQR*
Ga0070659_1003289422	3300005366	Corn Rhizosphere	MENIEPATPNEEESAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKGKLDE*
Ga0070659_1005218642	3300005366	Corn Rhizosphere	VADAITCRVTMDKLDPVNPPPSEDEAASDLARRLARYRRRVAAEDRPRSVKVIDRAINDADGKPKRDQR*
Ga0070714_1006966972	3300005435	Agricultural Soil	MTEKLDPVPVPEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIADAD
Ga0070662_1015568231	3300005457	Corn Rhizosphere	MDKFDPSIPPRDDDEGASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSANGAG*
Ga0068867_1017516642	3300005459	Miscanthus Rhizosphere	MDKFDPSIPPRDDDEGTSDLARRLARYRRRVEAEGRPRSLKLIDRAIE
Ga0070679_1019167642	3300005530	Corn Rhizosphere	DPILAPGNEDEATSDLARRLSRYRRRVAAEGRPRSLKLIDRAIEDAGRKAADSD*
Ga0070684_1000574672	3300005535	Corn Rhizosphere	MTDKPDPAAMPTEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIEDADKEARGAA*
Ga0068853_1000627673	3300005539	Corn Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIEDAVRKARGPA*
Ga0068853_1011644822	3300005539	Corn Rhizosphere	MTEKLDRSARQNGEGKAESDLARRLERYRRRIEAEGRPKSVKFIDRAIEDADKNARGAA*
Ga0070693_1002958741	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PDPTMSSEVQESAESDLERRLARYRRRVEAEGRPRSVKLIDQAIEDAAQKARGAA*
Ga0068855_1006169221	3300005563	Corn Rhizosphere	KWSGMTDKPDPAAMPTEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIEDADKEARGAA*
Ga0068855_1014393541	3300005563	Corn Rhizosphere	MDKFDPSIPPRDDDEGTSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADRKASDG*
Ga0070664_1010020211	3300005564	Corn Rhizosphere	MDKLDPILAPGNEDEATSDLARRLSRYRRRVAAEGRPRSLKLIDR
Ga0068856_1000106776	3300005614	Corn Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIEDAARKARGPA*
Ga0068856_1003086752	3300005614	Corn Rhizosphere	MEKPDPATTNQGEHSAECDLARRLARYRLRVEAEGRPRSLKLIDRAIEDADRKSRGAA*
Ga0068856_1004491462	3300005614	Corn Rhizosphere	MTDKLDPPALTQASDAAETDLARRLARYRRRVEAEGRPRSVKLIDRAIEDAGKKARGTA*
Ga0068856_1010234442	3300005614	Corn Rhizosphere	RDGGGLPAVSMDKFDPATPLPEDDEAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKS*
Ga0068852_1024876381	3300005616	Corn Rhizosphere	MTDKLDPPVLTQASDTAEADLARRLARYRRRVEAEGRPRSVKLIDRAIEDAG
Ga0068852_1026347232	3300005616	Corn Rhizosphere	MTERLDPQALPEAEDSEGSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKKAHGGA*
Ga0068863_1000361305	3300005841	Switchgrass Rhizosphere	MDKLDPFNLTPEEDSQASDLASRLERYRRRIEAEGRPRSVRVIDQAIEEASETGGQ*
Ga0079222_104050272	3300006755	Agricultural Soil	MEKLDPATCEPEGSDLARRLARYRRRVEAEGRKRSLRVIDRAINDAGEQD*
Ga0075425_1008147673	3300006854	Populus Rhizosphere	QTMDKLDPVSSKFEEDSPATDLARRLARYRRRIEAEGRPRSVRVIDKAIRDAGG*
Ga0075434_1017891512	3300006871	Populus Rhizosphere	MTKFDSVMPPDREKSDASDLARRLARYRRRVEAEGRPRSVRLIDQAIEDADKKSDRPE*
Ga0075434_1018933292	3300006871	Populus Rhizosphere	TYPKPWSASLLEQTMDKLDPVSSKFEEDSPATDLARRLARYRRRIEAEGRPRSVRVIDQAIRDAGDKRHDPSDG*
Ga0075424_1006718862	3300006904	Populus Rhizosphere	MDKLDPVSSKFEEDSPATDLARRLARYRRRIEAEGRPRSVRVIDQAIRDAGDKRHDPSDG
Ga0075435_1002553152	3300007076	Populus Rhizosphere	MDKLDPVSSKFEEDSPATDLARRLARYRRRIEAEGRPRSVRVIDKAIRDAGG*
Ga0066793_106455342	3300009029	Prmafrost Soil	MESDEPAGPNEEEVSADSDLARRLARYRRRVEADGRPRSLRLIDRAIKDAGKKSDGGG*
Ga0105238_114683441	3300009551	Corn Rhizosphere	MDKFDPSIPPRDDDEGTSDLARRLARYRRRVEAEGRPRSLKLIDRAIED
Ga0133939_1001834324	3300010051	Industrial Wastewater	MDKVQPAASEEEDEEEENSSADLARRLARYRRRVEAEGRPRSVKLIDRAIDDAGKKPPSGR*
Ga0137366_101360133	3300012354	Vadose Zone Soil	MDKGDLTEPGSPDKVQGDLASRLARYRSRVAAEGRPRSVRLIDRAIEDARKTPKPSK*
Ga0157327_10170192	3300012512	Arabidopsis Rhizosphere	MDNLEPRIPPQEGDEAATDLARRLARYRLRVEAEGRPRSVKFIDRAIEEAGRNPESES*
Ga0164300_104727721	3300012951	Soil	MTERLDPQALPEAEDSEGSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKKAHGGPERAINDPPDLE*
Ga0157373_110281381	3300013100	Corn Rhizosphere	MSEEPVNPRQDDESADLAKRLARYRRRVAAEGRPRSVRVIDRAIEDA
Ga0157371_101337103	3300013102	Corn Rhizosphere	MDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKRD
Ga0157371_106166072	3300013102	Corn Rhizosphere	MEKPDPATTNQGEHSAECDLARRLARYRLRVEAEGRPRSLKLIDRAIEDADMKSRGAA*
Ga0157370_104132562	3300013104	Corn Rhizosphere	MDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEDRPRSVKVIDRAINDADGKPKRDQR*
Ga0157369_101844973	3300013105	Corn Rhizosphere	EPVSPRQYDESAYLAKRLARYRRRVAAEGRPRSVRVIDRAIEDAAKKPGGRK*
Ga0120158_101025312	3300013772	Permafrost	MDKLDPANLRTSEESAASDLKRRLARYRRRLEAEGRTRWAKLVDRAIEDAGKKAKSSE*
Ga0182008_107962911	3300014497	Rhizosphere	APIIATSRQVMEDHDPTVPTDDQDSAGDLARRLARYRRRVEAEGRPRSLKLIDKAIEDADKKARGAA*
Ga0132258_101612967	3300015371	Arabidopsis Rhizosphere	MDDFDPAAPGPEEDSPASDLARRLARYRRRIEAEGRPRSVRVLDQAIKDAGKDK*
Ga0132258_102430044	3300015371	Arabidopsis Rhizosphere	MDKLDPATPSPEEDSPESDLARRLDRYRRRIEAEGRPRSVRVVDQAIKDAGKDS*
Ga0132258_104136662	3300015371	Arabidopsis Rhizosphere	MDKPAPQIPPCDGDEKASDLALRLARYRLRVEAEGRPRSLKFIDRAIEDAGRKPSSES*
Ga0132258_104176302	3300015371	Arabidopsis Rhizosphere	MDNPTQIRLSEDDDSPASGLARRLARYRRPVVADGRPRSVRLVDRAIEDAGKTNKREE*
Ga0197907_107323261	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSEEPVNPRQDDESADLAKRLARYRRRVAAEGRPRSVRVIDRAIEDAAKKPGGRK
Ga0206353_117130402	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKLDSPALPDRDDSSGSDLARRLARYRRQVEAEGRPHSLKLIDRAIEAEDGKARDAS
Ga0206353_118545432	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIADAVRKARGPA
Ga0206353_120678162	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MDKLDPVNPPPSEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKRDQR
Ga0207656_103658982	3300025321	Corn Rhizosphere	MDKFDPSIPPRDDDEGASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSANGAG
Ga0207680_106512252	3300025903	Switchgrass Rhizosphere	MDKFDPSIPPRDDDEGTSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSANGAG
Ga0207680_112065592	3300025903	Switchgrass Rhizosphere	MDKFDPATPLPEDDEAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKS
Ga0207647_100810163	3300025904	Corn Rhizosphere	MTEKLDPVPVPEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIADADTKARGAA
Ga0207647_102495802	3300025904	Corn Rhizosphere	DPVNPPPNEDEAASDLARRLARYRRRVAAEDRPRSVKVIDRAINDADGKPKRDQR
Ga0207647_103403822	3300025904	Corn Rhizosphere	MTDKPDPAAMPTEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIEDADKEARGAA
Ga0207705_1000155019	3300025909	Corn Rhizosphere	MDKIKPKSTEDQESAAADLARRLARYRRRVAAEGRPKSVRVIDRAIEDADKAAKSPK
Ga0207705_100316725	3300025909	Corn Rhizosphere	MSDKPDSSIPAEGNDAADSDLARRLARYRRRVEAEGRPRSVKLIDRAIEDAGRKASGAA
Ga0207705_100500343	3300025909	Corn Rhizosphere	MDKLDPTISASNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAIKDADAKPKRDKR
Ga0207705_101763042	3300025909	Corn Rhizosphere	MDKLDPVNPPPSEDEAASDLARRLARYRRRVAAEDRPRSVKVIDRAINDADGKPKRDQR
Ga0207707_100508963	3300025912	Corn Rhizosphere	MDKFDPTIPPTDEDESASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKREQR
Ga0207660_100001597	3300025917	Corn Rhizosphere	MEKPDPATTKDEHSAECDLARRLARYRLRVEAEGRPRSLKLIDRAIEDADRKSRGAA
Ga0207660_114067212	3300025917	Corn Rhizosphere	MTDKLDPPVLTQASGAAEADLARRLARYRRRVEAEGRPRSVKLIDRAIEDAGKKARDAAD
Ga0207657_1000131117	3300025919	Corn Rhizosphere	MDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAINDADGKPKREQR
Ga0207657_100711683	3300025919	Corn Rhizosphere	MEQPDPTMSSEVQESAESDLERRLARYRRRVEAEGRPRSVKLIDQAIEDAAQKARGAA
Ga0207657_101645913	3300025919	Corn Rhizosphere	MENIEPATPNEEESAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKGKLHE
Ga0207649_104418281	3300025920	Corn Rhizosphere	MENIEPATPNEEESAASDLARRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKGKLDE
Ga0207649_110336851	3300025920	Corn Rhizosphere	MDKPDAAIPPRDEDEAASDLARRLSRYRRRVEAEGRPRSVKLIDRAIEDADRKASDG
Ga0207652_100216735	3300025921	Corn Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIEDAVRKARGPA
Ga0207681_100845743	3300025923	Switchgrass Rhizosphere	MDKLDPFNLTPEEDSQASDLASRLERYRRRIEAEGRPRSVRVIDQAIEEASETGGQ
Ga0207690_100287401	3300025932	Corn Rhizosphere	MDKFDPSIPPRDNDEGASDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSANGAG
Ga0207690_101212273	3300025932	Corn Rhizosphere	MDKFDPATPLPEDDEAASDLSRRLARYRRRVEAEGRPRSLRLIDRAIEDAGKKS
Ga0207706_114259561	3300025933	Corn Rhizosphere	PVNPRQDDESADLAKRLARYRRRVAAEGRPRSVRVIDRAIEDAAKKPGGRK
Ga0207661_100485486	3300025944	Corn Rhizosphere	MTDKPDPAAMPTEDEDAESDLARRLARYRRRVEAEGRPRSVKFIDRAIEDADKEARGAA
Ga0207661_105375582	3300025944	Corn Rhizosphere	APGNEDEATSDLARRLSRYRRRVAAEGRPRSLKLIDRAIEDAGRKAADSD
Ga0207661_118461392	3300025944	Corn Rhizosphere	MDKLDPTISASNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRAIKDADGKPKRDKR
Ga0207667_111906552	3300025949	Corn Rhizosphere	GEHSAECDLARRLARYRLRVEAEGRPRSLKLIDRAIEDADRKSRGAA
Ga0207667_114318922	3300025949	Corn Rhizosphere	MDKLDPVNPPPNEDEAASDLARRLARYRRRVAAEGRPRSVKVIDRA
Ga0207667_120712861	3300025949	Corn Rhizosphere	LSKALPGLAKWSGMTDKPDPAAMPTEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIEDADKEARGAA
Ga0207640_106633402	3300025981	Corn Rhizosphere	MEKSDPLTPGQEQEGAESDLERRLARYRRRVEAEGRPRSVKVIDRAIADAARKARGPA
Ga0207639_109715472	3300026041	Corn Rhizosphere	MTEKLDRSARQNGEGKAESDLARRLERYRRRIEAEGRPKSVKFIDRAIEDADKNARGAA
Ga0207678_117546631	3300026067	Corn Rhizosphere	MTDKLDRGTRQNGEGKAESDLARRLERYRRRIEAEGRPKSVKFIDRAIEEADKNARGAA
Ga0207702_119432432	3300026078	Corn Rhizosphere	MTDKLDPPALTQASDAAETDLARRLARYRRRVEAEGRPRSVKLIDRAIEDAGKKARGTA
Ga0207648_115630272	3300026089	Miscanthus Rhizosphere	MDKFDPSIPPRDDDEGTSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKSA
Ga0207674_1000937014	3300026116	Corn Rhizosphere	MDKLDPILAPGNEDEATSDLARRLSRYRRRVAAEGRPRSLKLIDRAIEDAGRKAADSD
Ga0207698_127345252	3300026142	Corn Rhizosphere	MTERLDPQALPEAEDSEGSDLARRLARYRRRVEAEGRPRSLKLIDRAIEDAGKKAHGGA
Ga0209178_12807681	3300027725	Agricultural Soil	RPMTEKLDPVPVPEDENAESDLARRLARYRRRVEAEGRPRSVKFIDRAIADADTKARGAA
Ga0247719_10032358	3300028041	Soil	VDKPDPPVPPGETPDADLASRLARYRRRVAAEGRPRSARLIDRAI
Ga0268241_100022132	3300030511	Soil	MDKNDPAIPPRDDESASDLARRLARYRRRVEAEGRPRSVRLIDRAIEDAGKKSRRDG
Ga0308175_1000197706	3300031938	Soil	MTEKLDPAALPQGEDSGESDLARRLARYRRRVEAEGRPRSLKLIDRAIEDADKKARGAA
Ga0310810_101120886	3300033412	Soil	MREDLQPVPPAEPESADSDLARRLARYRRRVEAEGRPRSVKLIDRAIEDADKKPRDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063578

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences