Metagenome / Metatranscriptome Family F063855

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063855
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	88 residues
Representative Sequence	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Number of Associated Samples	108
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.98 %
% of genes near scaffold ends (potentially truncated)	46.51 %
% of genes from short scaffolds (< 2000 bps)	93.80 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.341 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.457 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.736 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 75.31% β-sheet: 0.00% Coil/Unstructured: 24.69%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF12697	Abhydrolase_6	19.38
PF06078	DUF937	13.18
PF04226	Transgly_assoc	1.55
PF13458	Peripla_BP_6	0.78
PF04366	Ysc84	0.78
PF00230	MIP	0.78
PF01068	DNA_ligase_A_M	0.78
PF12146	Hydrolase_4	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	13.18
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.55
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.78
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.78
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.78
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.34 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.34 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.34 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.91 %
Unclassified	root	N/A	35.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.26 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.66 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3.88 %
Geminicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae	1.55 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.78 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.78 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.66 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	1.55 %
Geminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1.55 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.78 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.78 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.78 %
Derxia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Derxia	0.78 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.66 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1.55 %
Geminicoccus harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus harenae	1.55 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.78 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	0.78 %
Derxia gummosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Derxia → Derxia gummosa	0.78 %
Nitrobacter vulgaris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter vulgaris	0.78 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.66 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1.55 %
Geminicoccus harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus harenae	1.55 %
Derxia gummosa DSM 723	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Derxia → Derxia gummosa → Derxia gummosa DSM 723	0.78 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	0.78 %
Methylobacterium sp. WSM2598	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	0.78 %
Nitrobacter vulgaris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter vulgaris	0.78 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10003171	All Organisms → cellular organisms → Bacteria → Proteobacteria	8239	Open in IMG/M
3300002568\|C688J35102_120949209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2853	Open in IMG/M
3300003579\|Ga0007429J51699_1039894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300004153\|Ga0063455_100495180	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300004157\|Ga0062590_100771649	Not Available	879	Open in IMG/M
3300004157\|Ga0062590_101743119	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300004479\|Ga0062595_100419874	Not Available	968	Open in IMG/M
3300004643\|Ga0062591_101752672	Not Available	632	Open in IMG/M
3300005093\|Ga0062594_101536685	Not Available	685	Open in IMG/M
3300005168\|Ga0066809_10050105	All Organisms → cellular organisms → Bacteria → Proteobacteria	934	Open in IMG/M
3300005169\|Ga0066810_10038631	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300005328\|Ga0070676_10089608	All Organisms → cellular organisms → Bacteria → Proteobacteria	1882	Open in IMG/M
3300005338\|Ga0068868_101353275	Not Available	663	Open in IMG/M
3300005341\|Ga0070691_10109725	All Organisms → cellular organisms → Bacteria → Proteobacteria	1379	Open in IMG/M
3300005345\|Ga0070692_10172534	All Organisms → cellular organisms → Bacteria → Proteobacteria	1248	Open in IMG/M
3300005347\|Ga0070668_100771222	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300005366\|Ga0070659_101035445	All Organisms → cellular organisms → Bacteria → Proteobacteria	722	Open in IMG/M
3300005366\|Ga0070659_101525778	Not Available	596	Open in IMG/M
3300005436\|Ga0070713_100534622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1109	Open in IMG/M
3300005437\|Ga0070710_10122261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1577	Open in IMG/M
3300005539\|Ga0068853_100224200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1718	Open in IMG/M
3300005615\|Ga0070702_101635781	Not Available	534	Open in IMG/M
3300005834\|Ga0068851_10431640	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300006048\|Ga0075363_101005895	Not Available	514	Open in IMG/M
3300006178\|Ga0075367_10061139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2247	Open in IMG/M
3300006178\|Ga0075367_10860384	Not Available	578	Open in IMG/M
3300006573\|Ga0074055_11834527	Not Available	524	Open in IMG/M
3300006579\|Ga0074054_12130399	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300006603\|Ga0074064_10011163	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300006606\|Ga0074062_12764266	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300006953\|Ga0074063_14146944	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300009148\|Ga0105243_12444091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	561	Open in IMG/M
3300009551\|Ga0105238_10696099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1028	Open in IMG/M
3300010044\|Ga0126310_11004249	Not Available	657	Open in IMG/M
3300010373\|Ga0134128_12501940	Not Available	569	Open in IMG/M
3300010375\|Ga0105239_13485408	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300010397\|Ga0134124_10531381	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010403\|Ga0134123_10974385	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300011106\|Ga0151489_1540388	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300011119\|Ga0105246_10044065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3030	Open in IMG/M
3300011119\|Ga0105246_10653476	All Organisms → cellular organisms → Bacteria → Proteobacteria	916	Open in IMG/M
3300012212\|Ga0150985_104565853	Not Available	563	Open in IMG/M
3300012212\|Ga0150985_105526139	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300012212\|Ga0150985_105549364	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300012212\|Ga0150985_118409797	Not Available	732	Open in IMG/M
3300012212\|Ga0150985_121640219	Not Available	967	Open in IMG/M
3300012212\|Ga0150985_122541195	Not Available	522	Open in IMG/M
3300012469\|Ga0150984_111138677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter vulgaris	782	Open in IMG/M
3300012469\|Ga0150984_116593433	All Organisms → cellular organisms → Bacteria → Proteobacteria	1455	Open in IMG/M
3300012469\|Ga0150984_120531781	Not Available	502	Open in IMG/M
3300012907\|Ga0157283_10364308	Not Available	525	Open in IMG/M
3300012955\|Ga0164298_11226289	Not Available	570	Open in IMG/M
3300012960\|Ga0164301_10574094	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300012961\|Ga0164302_10224060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1175	Open in IMG/M
3300012985\|Ga0164308_12051800	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300012987\|Ga0164307_10812285	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300012988\|Ga0164306_10081827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2057	Open in IMG/M
3300012988\|Ga0164306_10883334	Not Available	727	Open in IMG/M
3300014745\|Ga0157377_11729809	Not Available	505	Open in IMG/M
3300014968\|Ga0157379_11147177	Not Available	746	Open in IMG/M
3300015372\|Ga0132256_101000175	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
3300015374\|Ga0132255_100420249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1950	Open in IMG/M
3300015374\|Ga0132255_100707105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1496	Open in IMG/M
3300017792\|Ga0163161_10207330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	1513	Open in IMG/M
3300017792\|Ga0163161_11286953	Not Available	635	Open in IMG/M
3300017965\|Ga0190266_10678867	Not Available	639	Open in IMG/M
3300018061\|Ga0184619_10140868	Not Available	1098	Open in IMG/M
3300018067\|Ga0184611_1349549	Not Available	507	Open in IMG/M
3300018074\|Ga0184640_10306075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus harenae	722	Open in IMG/M
3300018083\|Ga0184628_10210736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus harenae	1017	Open in IMG/M
3300018469\|Ga0190270_11288208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300018469\|Ga0190270_12516619	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300018920\|Ga0190273_11020594	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300019263\|Ga0184647_1365087	Not Available	547	Open in IMG/M
3300019356\|Ga0173481_10187549	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300019767\|Ga0190267_10273527	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300020005\|Ga0193697_1138864	Not Available	549	Open in IMG/M
3300020016\|Ga0193696_1027614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1522	Open in IMG/M
3300021082\|Ga0210380_10000790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13265	Open in IMG/M
3300021951\|Ga0222624_1487568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	592	Open in IMG/M
3300022756\|Ga0222622_10522667	Not Available	850	Open in IMG/M
3300025315\|Ga0207697_10211372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300025321\|Ga0207656_10561217	Not Available	582	Open in IMG/M
3300025898\|Ga0207692_10362946	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
3300025901\|Ga0207688_10042005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2545	Open in IMG/M
3300025907\|Ga0207645_10072614	All Organisms → cellular organisms → Bacteria	2203	Open in IMG/M
3300025914\|Ga0207671_11231025	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300025919\|Ga0207657_10216013	Not Available	1537	Open in IMG/M
3300025928\|Ga0207700_10763620	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300025930\|Ga0207701_11453267	Not Available	557	Open in IMG/M
3300025945\|Ga0207679_10444157	Not Available	1149	Open in IMG/M
3300025945\|Ga0207679_11452822	Not Available	629	Open in IMG/M
3300025961\|Ga0207712_11227528	Not Available	669	Open in IMG/M
3300026035\|Ga0207703_11805777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300026041\|Ga0207639_10546957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1063	Open in IMG/M
3300026067\|Ga0207678_11078136	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	711	Open in IMG/M
3300027383\|Ga0209213_1020082	Not Available	1247	Open in IMG/M
3300027523\|Ga0208890_1025469	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300027866\|Ga0209813_10155559	Not Available	822	Open in IMG/M
3300028379\|Ga0268266_11491038	Not Available	652	Open in IMG/M
3300028587\|Ga0247828_10780364	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300028589\|Ga0247818_11187498	Not Available	545	Open in IMG/M
3300028608\|Ga0247819_10466123	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300028704\|Ga0307321_1015164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328	Open in IMG/M
3300028712\|Ga0307285_10057484	All Organisms → cellular organisms → Bacteria → Proteobacteria	978	Open in IMG/M
3300028721\|Ga0307315_10076878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	960	Open in IMG/M
3300028768\|Ga0307280_10199532	Not Available	707	Open in IMG/M
3300028811\|Ga0307292_10221633	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300028824\|Ga0307310_10657577	Not Available	536	Open in IMG/M
3300028880\|Ga0307300_10145062	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300030829\|Ga0308203_1004765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1370	Open in IMG/M
3300030903\|Ga0308206_1040474	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300030903\|Ga0308206_1070089	Not Available	736	Open in IMG/M
3300030905\|Ga0308200_1103219	Not Available	610	Open in IMG/M
3300031058\|Ga0308189_10179996	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300031058\|Ga0308189_10311164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Derxia → Derxia gummosa → Derxia gummosa DSM 723	620	Open in IMG/M
3300031058\|Ga0308189_10400987	Not Available	567	Open in IMG/M
3300031091\|Ga0308201_10089821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	865	Open in IMG/M
3300031092\|Ga0308204_10020088	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300031092\|Ga0308204_10141770	Not Available	705	Open in IMG/M
3300031114\|Ga0308187_10240308	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300031152\|Ga0307501_10077072	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300031152\|Ga0307501_10106455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	715	Open in IMG/M
3300031200\|Ga0307496_10094592	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300031226\|Ga0307497_10025944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1864	Open in IMG/M
3300031740\|Ga0307468_100142707	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300031854\|Ga0310904_10847672	Not Available	642	Open in IMG/M
3300032205\|Ga0307472_100344949	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300034149\|Ga0364929_0043054	All Organisms → cellular organisms → Bacteria → Proteobacteria	1359	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.34%
Host-Associated	Host-Associated	35.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.14%
Plants	Host-Associated → Plants	35.66%
Aquatic	Environmental → Aquatic	6.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.73%
Roots	Host-Associated → Plants → Roots	3.10%
Sediment	Environmental → Aquatic → Sediment	3.88%
Freshwater	Environmental → Aquatic → Freshwater	2.33%
Floodplain	Environmental → Terrestrial → Floodplain	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.85%
Loam	Environmental → Terrestrial → Soil → Loam	8.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.33%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.10%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.55%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.78%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.43%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.43%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.10%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.33%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.55%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003579	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100031716	3300001661	Forest Soil	MSGERLPELLRGLGIEPFLDDATTLQRLADVALDLARRAANSRDAEGCRRELELFEWCSERLSRLQSDVFQNAAAASPLVH*
C688J35102_1209492093	3300002568	Soil	LTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0007429J51699_10398941	3300003579	Avena Fatua Rhizosphere	RNMPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0063455_1004951801	3300004153	Soil	LTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH*
Ga0062590_1007716492	3300004157	Soil	ALSAQERTGTGSETSMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0062590_1017431191	3300004157	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAG
Ga0062595_1004198742	3300004479	Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0062591_1017526721	3300004643	Soil	MPWGSALSAQERTGTGSETSMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0062594_1015366851	3300005093	Soil	ETSMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0066809_100501052	3300005168	Soil	CRPVRNMPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0066810_100386311	3300005169	Soil	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0070676_100896083	3300005328	Miscanthus Rhizosphere	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0068868_1013532752	3300005338	Miscanthus Rhizosphere	GTGSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0070691_101097253	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH*
Ga0070692_101725342	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0070668_1007712222	3300005347	Switchgrass Rhizosphere	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH*
Ga0070659_1010354452	3300005366	Corn Rhizosphere	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH*
Ga0070659_1015257782	3300005366	Corn Rhizosphere	RLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0070713_1005346222	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPWGSALTARGEERERSETNMTADWLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0070710_101222612	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0068853_1002242004	3300005539	Corn Rhizosphere	RLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0070702_1016357811	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RNMPAGSALTAWGAGTGSETSMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLKPDVCEATTAGSRLLH*
Ga0068851_104316401	3300005834	Corn Rhizosphere	LTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKP
Ga0075363_1010058951	3300006048	Populus Endosphere	VEPFLDDATTLQRLADVAWDLARRAAAASDTQEYRRELEVFEWCTQRLSLLKPDPDETIAAGSRRLH*
Ga0075367_100611392	3300006178	Populus Endosphere	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETTTAGSRLLH*
Ga0075367_108603842	3300006178	Populus Endosphere	MSANRLPELLRGLGVEPFLDDATTLQRLADVAWDLARRAAAASDTQEYRRELEVFEWCTQRLSLLKPDPDETIAAGSRRLH*
Ga0074055_118345272	3300006573	Soil	DRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH*
Ga0074054_121303992	3300006579	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKSDVFEITAAGSRRLH*
Ga0074064_100111631	3300006603	Soil	ERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0074062_127642662	3300006606	Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0074063_141469441	3300006953	Soil	MPWGSALTAQERKGTGSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0105243_124440912	3300009148	Miscanthus Rhizosphere	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETA
Ga0105238_106960992	3300009551	Corn Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0126310_110042492	3300010044	Serpentine Soil	EEEKRSETNMTADRLPELLLGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH*
Ga0134128_125019402	3300010373	Terrestrial Soil	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTRGYRRELEVFEWCTQRLSLLKPDPDETVAAGSRRLH*
Ga0105239_134854082	3300010375	Corn Rhizosphere	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSNTQEYRRELEVFEWCTQRLSLLKPDVGET
Ga0134124_105313811	3300010397	Terrestrial Soil	MPWGSALTAQERKATGSETDMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDV
Ga0134123_109743853	3300010403	Terrestrial Soil	GSETSMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRVSLLCETAAGSRRLH*
Ga0151489_15403882	3300011106	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0105246_100440652	3300011119	Miscanthus Rhizosphere	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0105246_106534761	3300011119	Miscanthus Rhizosphere	MPWGSALTAQERKGTGSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDV
Ga0150985_1045658531	3300012212	Avena Fatua Rhizosphere	MSAHRLPELLRGLDVEPFLDDTPTLQRLADVAWDLARQAAASGDAQEYRRELEVFEWCTQRLSLLKSDGCETIATGSRRLH*
Ga0150985_1055261391	3300012212	Avena Fatua Rhizosphere	MPWGSALTAQERKATGSETDMSANRLPELLRGLGVEPFLYDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCETTTAGSRRLH*
Ga0150985_1055493642	3300012212	Avena Fatua Rhizosphere	ERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDVSEITAAGSRRLH*
Ga0150985_1184097972	3300012212	Avena Fatua Rhizosphere	GNETHMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAHEYRRELEVFEWCTQRLSLLKSDVFEIAAAGSRRLH*
Ga0150985_1216402193	3300012212	Avena Fatua Rhizosphere	LPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH*
Ga0150985_1225411951	3300012212	Avena Fatua Rhizosphere	ELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH*
Ga0150984_1111386771	3300012469	Avena Fatua Rhizosphere	ATGSETDMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDVCEITAAGSRRLH*
Ga0150984_1165934332	3300012469	Avena Fatua Rhizosphere	MPWRSALTAQERKGNETHMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAHEYRRELEVFEWCTQRLSLLKSDVFEIAAAGSRRLH*
Ga0150984_1205317812	3300012469	Avena Fatua Rhizosphere	EERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0157283_103643081	3300012907	Soil	RKATGSETDMSANRLPELLRGLGAEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0164298_112262892	3300012955	Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETDAGSRRLH*
Ga0164301_105740941	3300012960	Soil	TAQGRKATGSETDMSANRLPELLRGLGVEPFLDDAATLQRLADVAWALARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCEITAAGSRRLH*
Ga0164302_102240602	3300012961	Soil	MPWGSALTAQERKATGSETEMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCETTTAGSRRLH*
Ga0164308_120518002	3300012985	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLK
Ga0164307_108122852	3300012987	Soil	MPWGSALTAQERKATGSETDMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCETTTAGSRRLH*
Ga0164306_100818274	3300012988	Soil	MPWGSELTARGEERERSETKMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0164306_108833342	3300012988	Soil	MPWGSALTAQERKGTGSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETDAGSRRLH*
Ga0157377_117298091	3300014745	Miscanthus Rhizosphere	MSANRLPELLRGLGVEPFLDDATTLQRLADVAWDLARRAAAASDTQEYRRELEVFEWCTQRLSLLKPDPDEAVAAGSRRLH*
Ga0157379_111471772	3300014968	Switchgrass Rhizosphere	RNMPWGSALTAQERKGTGSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH*
Ga0132256_1010001752	3300015372	Arabidopsis Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDTATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0132255_1004202492	3300015374	Arabidopsis Rhizosphere	MPWGSALTAQERKATGSETDMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLAPRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCEITAAGSRRLH*
Ga0132255_1007071051	3300015374	Arabidopsis Rhizosphere	TNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH*
Ga0163161_102073302	3300017792	Switchgrass Rhizosphere	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCETTTAGSRRLH
Ga0163161_112869532	3300017792	Switchgrass Rhizosphere	AGTGSETSMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTRGYRRELEVFEWCTQRLSLLKPDPDETVAAGSRRLH
Ga0190266_106788671	3300017965	Soil	LTAQERKATGSETNMSADRLPELLRGLGVEPFLDDAVTLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQCLSLLCGAAAGSRWLHSPRSAASLASW
Ga0184619_101408682	3300018061	Groundwater Sediment	MSGDRLPELLRGLGVEPFLDDVTTLQRLADVAWDLARRAADLRDAEGYRRELELFEWCSERLSLLQTDVFQNTAAHSRLVH
Ga0184611_13495491	3300018067	Groundwater Sediment	LTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0184640_103060752	3300018074	Groundwater Sediment	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0184628_102107361	3300018083	Groundwater Sediment	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSVAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0190270_112882082	3300018469	Soil	RNMPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0190270_125166192	3300018469	Soil	MSADRLPELLRGLGVEPFLDDAVTLQRLADVAWDLARRAAASSDSQGYRRELEVFEWCTQRLSLLKPDVFENTTAGSRRLH
Ga0190273_110205942	3300018920	Soil	LTAQERKATGSETNMSADRLPELLRGLGVEPFLDDAVTLQRLADVAWDLARRAAISSDAQEYRRELEVFEWCTQRLSLLKSDVFETTAIGSRRLH
Ga0184647_13650872	3300019263	Groundwater Sediment	GTGSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0173481_101875491	3300019356	Soil	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETTTAGSRLLH
Ga0190267_102735272	3300019767	Soil	LTAQERKATGSETNMSADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0193697_11388642	3300020005	Soil	MPWRSALTAQEGNEKRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0193696_10276143	3300020016	Soil	LTAQEGNEKRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0210380_100007907	3300021082	Groundwater Sediment	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0222624_14875682	3300021951	Groundwater Sediment	RLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0222622_105226671	3300022756	Groundwater Sediment	RSKVSSSSEHAVGMGVDGQEEEEKRSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH
Ga0207697_102113721	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VRNMPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207656_105612172	3300025321	Corn Rhizosphere	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVC
Ga0207692_103629462	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	NRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207688_100420054	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207645_100726143	3300025907	Miscanthus Rhizosphere	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0207671_112310251	3300025914	Corn Rhizosphere	NRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207657_102160132	3300025919	Corn Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDPDETVAAGSRRLH
Ga0207700_107636201	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPWGSALTARGEERERSETNMTADWLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207701_114532672	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0207679_104441571	3300025945	Corn Rhizosphere	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYQRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207679_114528222	3300025945	Corn Rhizosphere	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTRGYRRELEVFEWCTQRLSLLKPDPDETVAAGSRRLH
Ga0207712_112275281	3300025961	Switchgrass Rhizosphere	RPARNMPWGSALSAQERTGTGSETSMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH
Ga0207703_118057772	3300026035	Switchgrass Rhizosphere	MPWGSALTAQERKGTGSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVGETTAVGSRRLH
Ga0207639_105469571	3300026041	Corn Rhizosphere	EERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0207678_110781361	3300026067	Corn Rhizosphere	NRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH
Ga0209213_10200823	3300027383	Forest Soil	MSGERLPELLRGLGIEPFLDDATTLQRLADVALDLARRAANSRDAEGCRRELELFEWCSERLSRLQSDVFQNAAAASPLVH
Ga0208890_10254692	3300027523	Soil	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0209813_101555592	3300027866	Populus Endosphere	MPWGSALSAQERTGTGSETSMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH
Ga0268266_114910382	3300028379	Switchgrass Rhizosphere	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAALSDAQSYRRELEVFEWCTQRLSLLCETAAGSRRLH
Ga0247828_107803642	3300028587	Soil	LGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0247818_111874981	3300028589	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0247819_104661231	3300028608	Soil	MPWGSALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLL
Ga0307321_10151642	3300028704	Soil	MGVDGQEEEEKRSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH
Ga0307285_100574841	3300028712	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAG
Ga0307315_100768782	3300028721	Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0307280_101995322	3300028768	Soil	VEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH
Ga0307292_102216331	3300028811	Soil	MSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0307310_106575772	3300028824	Soil	RGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH
Ga0307300_101450622	3300028880	Soil	MPWRSALTAQEGNEKRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSR
Ga0308203_10047651	3300030829	Soil	KRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0308206_10404742	3300030903	Soil	KRERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0308206_10700891	3300030903	Soil	LTAQERKATGSETNMSADRLPELLRGLGVEPFLDDAVTLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKSDVFETTAIGSRRLH
Ga0308200_11032191	3300030905	Soil	MPWRSALTAQEGNEKRSETNMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0308189_101799961	3300031058	Soil	RRSALTAQEGNEKRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0308189_103111642	3300031058	Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWALARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH
Ga0308189_104009871	3300031058	Soil	PGGSALTAQERKATGSETNMSADRLPELLRGLGVEPFLDDAVTLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKSDVFETTAIGSRRLH
Ga0308201_100898212	3300031091	Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLCETAAGSRRLH
Ga0308204_100200884	3300031092	Soil	ELLRGLGVEPFLDDAVTLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKSDVFETTAIGSRRLH
Ga0308204_101417702	3300031092	Soil	TNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0308187_102403081	3300031114	Soil	RCRTARNMPWRSALTAQEGNEKRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0307501_100770722	3300031152	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAAASDTQGYRRELEVFEWCTQRLSLLESDVFELAAAGSRRRLH
Ga0307501_101064551	3300031152	Soil	RSALTAQDGHEKRSETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDTQEYRRELEVFEWCTQRLSLLKPDVCETTAAGSRRLH
Ga0307496_100945921	3300031200	Soil	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0307497_100259444	3300031226	Soil	SETNMTANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0307468_1001427071	3300031740	Hardwood Forest Soil	MPWGWALTARGEERERSETNMTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH
Ga0310904_108476721	3300031854	Soil	LTAQERKATGSETDMSANRLPELLRGLGVEPFLDDAATLQRLADVAWDLARRAAASSDAQEYRRELEVFEWCTQRLSLLKPDGCETTTAGSRRLH
Ga0307472_1003449491	3300032205	Hardwood Forest Soil	MTANRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAPGYRRELEVFEWCTQRLSLLKPDVCETAAGSRRLH
Ga0364929_0043054_886_1128	3300034149	Sediment	MTADRLPELLRGLGVEPFLDDAATLQRLADVAWHLARRAAASSDAQGYRRELEVFEWCTQRLSLLKPDVYETAAGSRRLH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063855

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences