Metagenome / Metatranscriptome Family F064042

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064042
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	90 residues
Representative Sequence	IEPSQYTFDLSLGYDTGDDPANNYLKHIGIQLVVQNIFDRDPAFEYRISTGGGNPAAYDILKSYQGRTISLILTKTW
Number of Associated Samples	102
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.12 %
% of genes near scaffold ends (potentially truncated)	96.12 %
% of genes from short scaffolds (< 2000 bps)	96.90 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.891 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.705 % of family members)
Environment Ontology (ENVO)	Unclassified (45.736 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.566 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.86% β-sheet: 26.67% Coil/Unstructured: 70.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00593	TonB_dep_Rec	16.28
PF00578	AhpC-TSA	6.98
PF03358	FMN_red	4.65
PF06980	DUF1302	3.10
PF07715	Plug	3.10
PF12760	Zn_Tnp_IS1595	3.10
PF13844	Glyco_transf_41	3.10
PF13432	TPR_16	2.33
PF04234	CopC	0.78
PF00083	Sugar_tr	0.78
PF03886	ABC_trans_aux	0.78
PF09335	SNARE_assoc	0.78
PF13649	Methyltransf_25	0.78
PF01569	PAP2	0.78
PF01855	POR_N	0.78
PF00571	CBS	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.78
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.78
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.78
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	0.78
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
All Organisms	root	All Organisms	34.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
cellular organisms	root	All Organisms → cellular organisms	34.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.55 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.55 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.55 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.55 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.78 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	1.55 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.55 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.78 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.55 %
Geomesophilobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomesophilobacter	1.55 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.78 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.78 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.89 %
Geomesophilobacter sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomesophilobacter → Geomesophilobacter sediminis	1.55 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.55 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.78 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.78 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0316380	Not Available	551	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105357892	Not Available	1143	Open in IMG/M
3300000789\|JGI1027J11758_12174412	Not Available	554	Open in IMG/M
3300002907\|JGI25613J43889_10187524	Not Available	551	Open in IMG/M
3300003999\|Ga0055469_10203034	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300004114\|Ga0062593_101922667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300004156\|Ga0062589_102094451	Not Available	576	Open in IMG/M
3300004801\|Ga0058860_11432727	Not Available	712	Open in IMG/M
3300005093\|Ga0062594_101259789	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005329\|Ga0070683_101062605	Not Available	777	Open in IMG/M
3300005329\|Ga0070683_101199941	Not Available	729	Open in IMG/M
3300005330\|Ga0070690_100732399	Not Available	762	Open in IMG/M
3300005332\|Ga0066388_107333306	Not Available	554	Open in IMG/M
3300005354\|Ga0070675_101123179	Not Available	723	Open in IMG/M
3300005364\|Ga0070673_102295658	Not Available	513	Open in IMG/M
3300005434\|Ga0070709_11457379	Not Available	555	Open in IMG/M
3300005436\|Ga0070713_102259953	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300005436\|Ga0070713_102280452	Not Available	524	Open in IMG/M
3300005458\|Ga0070681_10218617	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300005545\|Ga0070695_101030807	Not Available	670	Open in IMG/M
3300005718\|Ga0068866_10976380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300005842\|Ga0068858_100857551	Not Available	887	Open in IMG/M
3300005844\|Ga0068862_101196327	Not Available	758	Open in IMG/M
3300006050\|Ga0075028_100615462	Not Available	646	Open in IMG/M
3300006172\|Ga0075018_10571623	Not Available	598	Open in IMG/M
3300006172\|Ga0075018_10759957	Not Available	528	Open in IMG/M
3300006175\|Ga0070712_100944449	Not Available	745	Open in IMG/M
3300006175\|Ga0070712_101903708	Not Available	521	Open in IMG/M
3300006237\|Ga0097621_101056251	Not Available	761	Open in IMG/M
3300006237\|Ga0097621_101194472	Not Available	716	Open in IMG/M
3300006358\|Ga0068871_101246299	Not Available	698	Open in IMG/M
3300006797\|Ga0066659_11339010	Not Available	597	Open in IMG/M
3300007255\|Ga0099791_10073904	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300007788\|Ga0099795_10066090	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300007788\|Ga0099795_10529059	Not Available	553	Open in IMG/M
3300009090\|Ga0099827_11549916	Not Available	577	Open in IMG/M
3300009098\|Ga0105245_13050675	Not Available	519	Open in IMG/M
3300009137\|Ga0066709_103492756	Not Available	570	Open in IMG/M
3300009143\|Ga0099792_10087993	Not Available	1606	Open in IMG/M
3300009176\|Ga0105242_10334057	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300009176\|Ga0105242_10443095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1222	Open in IMG/M
3300009176\|Ga0105242_12123079	Not Available	606	Open in IMG/M
3300009176\|Ga0105242_12145888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300009177\|Ga0105248_12112697	Not Available	640	Open in IMG/M
3300009551\|Ga0105238_11491115	Not Available	705	Open in IMG/M
3300010159\|Ga0099796_10058812	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300010159\|Ga0099796_10076838	Not Available	1217	Open in IMG/M
3300010358\|Ga0126370_12087376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300010359\|Ga0126376_12952782	Not Available	525	Open in IMG/M
3300010361\|Ga0126378_12991616	Not Available	539	Open in IMG/M
3300010362\|Ga0126377_12919288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300010366\|Ga0126379_13316356	Not Available	539	Open in IMG/M
3300010396\|Ga0134126_12937251	Not Available	515	Open in IMG/M
3300010397\|Ga0134124_10766150	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300010397\|Ga0134124_12091334	Not Available	604	Open in IMG/M
3300011119\|Ga0105246_11416116	Not Available	649	Open in IMG/M
3300011119\|Ga0105246_11503830	Not Available	632	Open in IMG/M
3300012199\|Ga0137383_10096373	All Organisms → cellular organisms → Bacteria	2145	Open in IMG/M
3300012199\|Ga0137383_10700000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	740	Open in IMG/M
3300012200\|Ga0137382_10490301	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300012202\|Ga0137363_10433662	Not Available	1098	Open in IMG/M
3300012208\|Ga0137376_11553186	Not Available	553	Open in IMG/M
3300012210\|Ga0137378_10186557	Not Available	1930	Open in IMG/M
3300012212\|Ga0150985_118876594	Not Available	592	Open in IMG/M
3300012212\|Ga0150985_119766426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	910	Open in IMG/M
3300012212\|Ga0150985_121163119	Not Available	627	Open in IMG/M
3300012285\|Ga0137370_10589870	Not Available	686	Open in IMG/M
3300012285\|Ga0137370_10608577	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300012349\|Ga0137387_10619075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	784	Open in IMG/M
3300012357\|Ga0137384_10557989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	937	Open in IMG/M
3300012361\|Ga0137360_10692113	Not Available	875	Open in IMG/M
3300012362\|Ga0137361_10561893	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300012469\|Ga0150984_116122574	Not Available	514	Open in IMG/M
3300012685\|Ga0137397_11261502	Not Available	528	Open in IMG/M
3300012924\|Ga0137413_11547776	Not Available	540	Open in IMG/M
3300012930\|Ga0137407_10414512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1249	Open in IMG/M
3300012931\|Ga0153915_11129022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	915	Open in IMG/M
3300012944\|Ga0137410_10297156	Not Available	1278	Open in IMG/M
3300012944\|Ga0137410_11424200	Not Available	603	Open in IMG/M
3300012944\|Ga0137410_11427749	Not Available	602	Open in IMG/M
3300012944\|Ga0137410_11895672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomesophilobacter → Geomesophilobacter sediminis	528	Open in IMG/M
3300012957\|Ga0164303_10098139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1443	Open in IMG/M
3300012957\|Ga0164303_11018676	Not Available	591	Open in IMG/M
3300012971\|Ga0126369_11915685	Not Available	681	Open in IMG/M
3300012984\|Ga0164309_11880201	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300012986\|Ga0164304_10340589	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300012986\|Ga0164304_11214213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	610	Open in IMG/M
3300012989\|Ga0164305_11964077	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300013297\|Ga0157378_11261442	Not Available	779	Open in IMG/M
3300013297\|Ga0157378_11769873	Not Available	666	Open in IMG/M
3300013307\|Ga0157372_11424016	Not Available	799	Open in IMG/M
3300013308\|Ga0157375_12440458	Not Available	624	Open in IMG/M
3300013308\|Ga0157375_12555738	Not Available	610	Open in IMG/M
3300014311\|Ga0075322_1133985	Not Available	599	Open in IMG/M
3300014969\|Ga0157376_12330611	Not Available	575	Open in IMG/M
3300015245\|Ga0137409_10643908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	892	Open in IMG/M
3300015371\|Ga0132258_13803364	Not Available	1028	Open in IMG/M
3300015372\|Ga0132256_100381358	Not Available	1509	Open in IMG/M
3300015374\|Ga0132255_105474568	Not Available	537	Open in IMG/M
3300017966\|Ga0187776_10272838	Not Available	1090	Open in IMG/M
3300018059\|Ga0184615_10220578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1065	Open in IMG/M
3300020027\|Ga0193752_1132377	Not Available	993	Open in IMG/M
3300020068\|Ga0184649_1556159	Not Available	690	Open in IMG/M
3300021090\|Ga0210377_10021799	All Organisms → cellular organisms → Bacteria → Proteobacteria	4679	Open in IMG/M
3300021090\|Ga0210377_10706505	Not Available	555	Open in IMG/M
3300021445\|Ga0182009_10370966	Not Available	734	Open in IMG/M
3300021560\|Ga0126371_11268796	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300022722\|Ga0242657_1199684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	552	Open in IMG/M
3300025915\|Ga0207693_10783545	Not Available	735	Open in IMG/M
3300025918\|Ga0207662_10231107	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300025918\|Ga0207662_10577014	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300025929\|Ga0207664_11237811	Not Available	665	Open in IMG/M
3300025934\|Ga0207686_10108617	Not Available	1867	Open in IMG/M
3300025934\|Ga0207686_11107766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300025939\|Ga0207665_11403843	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomesophilobacter → Geomesophilobacter sediminis	556	Open in IMG/M
3300026023\|Ga0207677_11760835	Not Available	575	Open in IMG/M
3300026035\|Ga0207703_11916150	Not Available	569	Open in IMG/M
3300026121\|Ga0207683_10352161	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300026320\|Ga0209131_1045906	All Organisms → cellular organisms → Bacteria	2485	Open in IMG/M
3300026557\|Ga0179587_11097542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300028380\|Ga0268265_11141154	Not Available	775	Open in IMG/M
3300031344\|Ga0265316_11210831	Not Available	522	Open in IMG/M
3300031716\|Ga0310813_11134274	Not Available	718	Open in IMG/M
3300031823\|Ga0307478_11628986	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300031846\|Ga0318512_10610197	Not Available	557	Open in IMG/M
3300031954\|Ga0306926_11543632	Not Available	764	Open in IMG/M
3300031996\|Ga0308176_11705557	Not Available	672	Open in IMG/M
3300033475\|Ga0310811_10977683	Not Available	746	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.54%
Host-Associated	Host-Associated	29.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.57%
Plants	Host-Associated → Plants	28.68%
Aquatic	Environmental → Aquatic	6.98%
Human	Host-Associated → Human	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.05%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.30%
Freshwater	Environmental → Aquatic → Freshwater	3.10%
Sediment	Environmental → Aquatic → Sediment	3.10%
Roots	Host-Associated → Plants → Roots	2.33%
Marine	Environmental → Aquatic → Marine	0.78%
Digestive System	Host-Associated → Human → Digestive System	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.84%
Loam	Environmental → Terrestrial → Soil → Loam	13.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.33%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.78%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.78%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.78%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.33%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.10%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.33%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.33%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.55%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.78%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_03163802	2228664022	Soil	FDLSIGYDTGDDPGNDYLKHLGIQLVANNIMDKHAAFEYRTGTGGGNPAAMDILKPNNGRTISLILTKTW
INPhiseqgaiiFebDRAFT_1053578921	3300000364	Soil	FDLSIGYDTGDDPGNDYLKHLGIQLVANNIMDKHAAFEYRTGTGGGNPAAMDILKPNNGRTISLILTKTW*
JGI1027J11758_121744122	3300000789	Soil	DTGDDPGNDYLKHLGIQLVANNIMDKHAAFEYRTGTGGGNPAAMDILKPNNGRTISLILTKTW*
JGI25613J43889_101875241	3300002907	Grasslands Soil	SYYTFDLSAGYDTGDDPANNYLKHIGIQLIVQNIMDKHPPFEYRVSSNAGNPVPFDILKSDQGRTVTLILTKTW*
Ga0055469_102030341	3300003999	Natural And Restored Wetlands	EPSLYTFDLSLGYDTGDEPANDYLKNIGVQLVVQNIFDKDPAFEYRISTGGGNPAAYDILKSYQGRTVSLILTKTW*
Ga0062593_1019226672	3300004114	Soil	QTAPPNVNFQCATAGGTIPGGSFPCAINNYSNLEPSSYLFDVSLGYDTGDDPANDYLKHIGIQLVVQNIMNRSPAFEYRISTGGGNPAAFDILKNYQGRTVSLILTKTW*
Ga0062589_1020944511	3300004156	Soil	SIGYDTGDEPSNNYLKQLGIQLVINNIMDKHAAFEYRTGTGGGNPAAMDILKPNNGRTISLILTKTW*
Ga0058860_114327271	3300004801	Host-Associated	LANGGTVGGGTFPCAISGYTNIEPSYYTFDLSIGYDTGDTPANDYLKNIGVQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISMILTKTW*
Ga0062594_1012597892	3300005093	Soil	VSLGYDTGDDPANDYLKHIGIQLVVQNIMNRSPAFEYRISTGGGNPAAFDILKNYQGRTVSLILTKTW*
Ga0070683_1008676801	3300005329	Corn Rhizosphere	YQSHYFHTQNAPPNVNNQCLASGGTIGGGTFPCAITGYNNIEPAYYTFDLSIGYDTGDTPANNYLKNVGIQLVIQNIMDKHPPFEYRIGTGGGNPTTFDLTKSDVGRTVGLILTKTW*
Ga0070683_1010626053	3300005329	Corn Rhizosphere	SMGYDTGDDPANDYLKNIGIQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISLILTKTW*
Ga0070683_1011999411	3300005329	Corn Rhizosphere	GYDSGDDPANDYLKHIGVQLVVSNLLDKHSPFGYRIGTGGGNPAAMDILKPDQGRTISLILTKTW*
Ga0070690_1007323991	3300005330	Switchgrass Rhizosphere	NYTNIEPSQYTFDLSLGYDTGDDPANNYLKHIGIQLVVQNIFDRDPAFEYRISTGGGNPAAFDITKSLQGRTISLIVTKTW*
Ga0066388_1073333061	3300005332	Tropical Forest Soil	HTQAAPPNVNGQCLATNPNLGGGSSACAIEGYSNIEPSYYTFDLSFGYDTGDTPANQYLRNVAVQLVVQNIMDKHPPFEYRISTGGGNPTAFDILKTNQGRTISLIVTKTW*
Ga0070675_1011231791	3300005354	Miscanthus Rhizosphere	VNFQCTATGGTIPGGSLPCLINNYTNIEPSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNVMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW*
Ga0070673_1022956581	3300005364	Switchgrass Rhizosphere	PCLVSNYSNIEPAWLTFDLSIGYDTGDTPVNDYLKNMGIQLVISNIMDKHSPFEYRTGTGGGNPSAMDILKPNNGRTISVILTKTW*
Ga0070709_114573791	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LISNYSNIQPSLYTFDLSLGYDTGDDPVNDYLKHIGVQLVVQNIMDKTPAFQYRISTGGGNPATFDILKNYGGRTVSVILTKTW*
Ga0070713_1022599532	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GGTFPCAISNYTNIEPAETTFDLSLGYDTGDDPANYFLKHLGIQLVISNVTDKHPPFEYRTSTGGGNPAAFDILTGLQGRMYTLILTKTW*
Ga0070713_1022804521	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	FPCAISNYSNIEPPWYTFDLSLGYDTGDLPANDFLKHIGINLTVLNLLDKHAPFEYRTSSGGGNPGAFDILKDLFGTQYSIILTKTW*
Ga0070681_102186171	3300005458	Corn Rhizosphere	SWLTFDLSLGYDTGDDPANDYLKHIGVQLVVSNLLDKHSPFGYRIGTGGGNPAAMDILKPDQGRTISMIITKTW*
Ga0070695_1010308071	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	FFHAQAAPPQVNLQCTSAAGTLPGGSFPCAINNYSNIEPSQYTFDLSLGYDTGDNPANDYLKHVGVQLVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRMISLIVTKTW*
Ga0068866_109763801	3300005718	Miscanthus Rhizosphere	HVFHTQTAPPNVNFQCATAGGTIPGGSFPCAINNYSNLEPSSYLFDVSLGYDTGDDPANDYLKHIGIQLVVQNIMNRSPAFEYRISTGGGNPAAFDILKNYQGRTVSLILTKTW*
Ga0068858_1008575512	3300005842	Switchgrass Rhizosphere	WSVTGFMDYQSHFFHTQSAPPNVNFQCVATGSTTPGGTFPCLINNYSNLQPPQYTFDLSIGYDTAETPANDYLKHVGVQLVIQNIMDKAPAFQYRIQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0068862_1011963272	3300005844	Switchgrass Rhizosphere	CTATGGTIPGGSLPCLINNYTNIEPSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNVMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW*
Ga0075028_1006154621	3300006050	Watersheds	SYYTFDLSAGYDTGDDPANNYLKHIGIQLVVQNLMDSQPAFEYRVSSNGGNAAAFDVLKGLQGRTISLILTKTW*
Ga0075018_105716232	3300006172	Watersheds	FDLSLGYDTGDDPVNDYLKHIGVQLVVQNIMDKTPAFQYRISTGGGNPATFDILKNYGGRTVSVILTKTW*
Ga0075018_107599571	3300006172	Watersheds	FMDYTSHFFHTQSAPPNVNFQCVAAGGTVGGGSLPCAISNYTNLEPSQYTFDLSLGYDTGDTPANDYLKHLGIQLVIQNLLDRQPAFEYRTSTGGGNPAAFDILKSDQGRTVSFILTKTW
Ga0070712_1009444491	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ALLQTQNAPPNVNFACLTTGGTIGGGSLPCAINNYSDIEPAYYTFDLSFGYDTGDNTANYYLKHVGIQFVIQNLMNRLPAFEYRIGTGAGNPATFDIAKSDQGRTFGLIVTKTW*
Ga0070712_1019037081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GSSTGGGTFPCAINNYTNIEPAETTFDLSLGYDTGDEPANYFLKHVGIQLVVTNLLDKHPPFEYRTSTGGGNPAAFDILTGLQGRFFTLILTKTW*
Ga0097621_1010562511	3300006237	Miscanthus Rhizosphere	EPAWLTFDLSMGYDTGDTPANDYLKNMGIQLVISNIMDKHSPFEYRTGTGGGNPSAMDILKPNNGRTISLILTKTW*
Ga0097621_1011944722	3300006237	Miscanthus Rhizosphere	PSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNVMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW*
Ga0068871_1012462992	3300006358	Miscanthus Rhizosphere	AGGTTPGGTFPCLLNNYTNILPSQYSFDLSLGYDTGDAPFNDYLKHIGIQLVVQNIMDRSPAMMYRISTGGGNPAAFDIQKSLQGRTISMIVTKTW*
Ga0066659_113390101	3300006797	Soil	TAGGVVPGGSFPCAISNYNNLEPSQYTFDLSLGYDTGDDPLNDYLKHIGIQVVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRTVSLILTKTW*
Ga0099791_100739041	3300007255	Vadose Zone Soil	NIETSYYTFDLSIGYDTGEQPVNNYLKHIGIQIVVQKIMNKHPQFEYRIGTGGGNPTAFDLTKSDQGRTFGLILTKTW*
Ga0099795_100660901	3300007788	Vadose Zone Soil	NIEPSQYTFDLSLGYDTGDAPANDYLKHLGIQIVIQNLMDRQPAFEYRTSTGGGNPAAFDILKSDQGRTISFILTKTW*
Ga0099795_105290592	3300007788	Vadose Zone Soil	PSLYTFDLSLGYDTGDDPVNDYLKHIGVQLVVQNIADKTPAFQYRISTGGGNPATFDILKNYGGRTVSIIVTKTW*
Ga0099827_115499161	3300009090	Vadose Zone Soil	PGGSLPCLISNYSNIQPSLYTFDLSFGYDTGDDPVNDYLKHIGVQLVVQNVADRTPAFQYRISTGGGNPATFDILKNYGGRTFSVILTKTW*
Ga0105245_130506752	3300009098	Miscanthus Rhizosphere	GTAPGGTFPCLVNNYTNIEPAWLTFDLSMGYDTGDTPANDYLKNIGVQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISMILTKTW*
Ga0066709_1034927562	3300009137	Grasslands Soil	NFQCTTAGGTLPGGSFPCLISNYSNLQPSLYTFDLSAGYDTGDDPANDYLKHIGVQLVVQNVANKVPAFQYRISTGGGNPATFDILKNYGGRTISVIVTKTW*
Ga0099792_100879933	3300009143	Vadose Zone Soil	SLGYDTGDDPVNDYLKHIGVQLVVQNIADKTPAFQYRISTGGGNPATFDILKNYGGRSFSIIVTKTW*
Ga0105242_103340573	3300009176	Miscanthus Rhizosphere	ATPGGSLPCLVSNYSNIEPAWLTFDLSMGYDTGDTPANDYLKNMGIQLVISNIMDKHSPFEYRTGTGGGNPSAMDILKPNNGRTISLILTKTW*
Ga0105242_104430951	3300009176	Miscanthus Rhizosphere	LVNNYTNIEPAWLTFDLSMGYDTGDTPANDYLKNIGVQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISMILTKTW*
Ga0105242_121230791	3300009176	Miscanthus Rhizosphere	IGYDTGDDPATDYLKHIGVQLVVSNLLDKHSPFGYRIGTGGGTPAAMDILKPDQGRTISLILTKTW*
Ga0105242_121458882	3300009176	Miscanthus Rhizosphere	GGTLPSTTGATFPCAISNYTNIEPSQYTFDLSIGYDTGDVPANDYLKHLGIQVVIQNILDRHPAFEYRTSTGGGNPAAFDILKSDQGRTMSLILTKTW*
Ga0105248_121126971	3300009177	Switchgrass Rhizosphere	PPNVNFQCVATGSTTPGGTFPCLINNYSNLQPPQYTFDLSIGYDTAETPANDYLKHVGVQLVIQNIMDKAPAFQYRIQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0105238_114911151	3300009551	Corn Rhizosphere	AWLTFDLSMGYDTGDTPANDYLKNMGIQLVISNIMDKHSPFEYRTGTGGGNPSAMDILKPNNGRTISLILTKTW*
Ga0099796_100588121	3300010159	Vadose Zone Soil	PNVNFQCVAAGGTVGGGSLPCAISNYTNIEPSQYTFDLSLGYDTGDAPANDYLKHLGIQIVIQNLMDRQPALEYRTSTGGGNPAAFDILKSDQGRTISFILTKTW*
Ga0099796_100768383	3300010159	Vadose Zone Soil	GYDTGDDPVNDYLKHIGVQLVVQNIADRTPAFQYRISTGGGNPATFDILKNYGGRSFSIIVTKTW*
Ga0126370_120873762	3300010358	Tropical Forest Soil	EGYNNLEPSQYTFDLSVGYDTGDSPANEYLRNVGIQFVMQNVMDKHAAFEYRASATAGNPAAYDILKSIQGRTVSLIVTKTW*
Ga0126376_129527821	3300010359	Tropical Forest Soil	LPCLINNYTNIEPSQYTFDLSMGYDTGDNPANDYLKHIGMQLVIQNITDKKPAFEYRTSTGGGNPAPYDILKSNQGRTISVILTKTW*
Ga0126378_129916161	3300010361	Tropical Forest Soil	CLINNYTNIQPPQYTFDLSMGYDTGDNPANQYLKHIGIQVVVTNILDTAPAFQYRIQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0126377_129192881	3300010362	Tropical Forest Soil	NNLEPSQYTFDLSVGYDTGDSPANEYLRNVGIQFVMQNVMDKHAAFEYRASATAGNPAAYDILKSIQGRTVSLIVTKTW*
Ga0126379_133163561	3300010366	Tropical Forest Soil	DLSFGYDTGDDPANDYLKHLGIQLVINNLMDKHAAFEYRTGTGGGNPAAMDILKPNNGRTISLILTKTW*
Ga0134126_129372512	3300010396	Terrestrial Soil	NIEPAYYTFDLSLGYDTGDDPANDYLKHLGVQLVIQNLMDKHPPFEYRQSTGGGNPAAFDILKGDQGRSVSVILTKTW*
Ga0134124_107661501	3300010397	Terrestrial Soil	DTGDDPANDYLKHIGIQLVVQNIMNRSPAFEYRISTGGGNPAAFDILKNYQGRTVSLILTKTW*
Ga0134124_120913341	3300010397	Terrestrial Soil	VNNYTNIEPAWLTFDLSMGYDTGDTPANDYLKNIGVQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISMILTKTW*
Ga0105246_114161161	3300011119	Miscanthus Rhizosphere	SGGTIGGGTFPCAITGYNNIEPAYYTFDLSIGYDTGDTPANNYLKNVGIQLVIQNIMDKHPPFEYRIGTGGGNPTTFDLTKSDVGRTVGLILTKTW*
Ga0105246_115038301	3300011119	Miscanthus Rhizosphere	NYNNLQPSQYTFDLSLGYDTGDNPANDYLKHIGLQLVVQNLLDKDPAFQFRTQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0137383_100963734	3300012199	Vadose Zone Soil	FDLSLGYDTGDDPVNDYLKHIGVQLVVQNVADRTPAFQYRISTGGGNPATFDILKNYGGRTFSVILTKTW*
Ga0137383_107000001	3300012199	Vadose Zone Soil	TAPPNVNFQCTTAGGTLPGGSFPCLISNYSNLQPSLYTFDLSAGYDTGDDPANDYLKHIGVQLVVQNVANKVPAFQYRISTGGGNPATFDILKNYGGRTISLILTKTW*
Ga0137382_104903011	3300012200	Vadose Zone Soil	TQSAPPNVNFQCVAAGGTVGGGSLPCAISNYTNIEPSQYTFDLSLGYDTGDAPANDYLKHLGIQIVIQNLMDRQPAFEYRTSTGGGNPAAFDILKSDQGRTISFILTKTW*
Ga0137363_104336622	3300012202	Vadose Zone Soil	SYYTFDLSIGYDTGEQPVNNYLKHIGIQLVVQNIMDKHPPFEYRIGTGGGNPTAFDLTKSDQGRTFGLILTKTW*
Ga0137376_115531861	3300012208	Vadose Zone Soil	HTQNAPPNVNFQCTTAGGTIGGGSLPCLINNYTNLEPSYYTFDLSAGYDTGDDPANDYLKHIGIQLVVQNLMGTQPAFEYRISSNGGNAAAFDVLKGLQGRTISLIVTKTW*
Ga0137378_101865574	3300012210	Vadose Zone Soil	CLISNYSNIQPSLYTFDLSFGYDTGDDPVNDYLKHIGVQLVVQNVADRTPAFQYRISTGGGNPATFDILKNYGGRTFSVILTKTW*
Ga0150985_1188765941	3300012212	Avena Fatua Rhizosphere	LINNYTNIEPSQYTFDLSMGYDTGDDPANDYLKHIGLQLVVQNLTGKKPAFEYRTSTGGGNPAPYDILKSNQGRTISVILTKTW*
Ga0150985_1197664263	3300012212	Avena Fatua Rhizosphere	DLSMGYDTGDEPANNYLKNIGIQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISMILTKTW*
Ga0150985_1211631191	3300012212	Avena Fatua Rhizosphere	FDLSLGYDTGDDPANDYLKHLGVQLVISNLMDKHSPFEYRIGTGGGNPSAMDILKPNNGRTISLILTKTW*
Ga0137370_105898701	3300012285	Vadose Zone Soil	NGPWSATLFMDYISHFYHAQAAPPWVNFQCTAAGGVVPGGSFPCAISNYNNLEPSQYTFDLSLGYDTGDDPINDYLKHIGIQVVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRTVSLIITKTW*
Ga0137370_106085771	3300012285	Vadose Zone Soil	HTQNAPPNVNFQCVTAGGTIGGGTFPCLISNYNNIEPAYYTFDLSMGYDTGDDPANAYLKHVGIQLIVQNIVDKHPPFEYRIGTGGGNPAAFDITKSDQGRTIGLIVTKTW*
Ga0137387_106190751	3300012349	Vadose Zone Soil	NLQPSLYTFDLSAGYDTGDDPANDYLKHIGVQLVVQNIANKVPAFQYRISTGGGNPATFDILKNYGGRTISVIVTKTW*
Ga0137384_105579891	3300012357	Vadose Zone Soil	TGFMDYSSHYFHTQTAPPNVNFQCAAAGGTLPSTTGATFPCAISNYSNLQPSLYTFDLSAGYDTGDDPANDYLKHIGVQLVVQNVANKVPAFQYRISTGGGNPATFDILKNYGGRTISVIVTKTW*
Ga0137360_106921131	3300012361	Vadose Zone Soil	TQNAPPNVNLQCTTTGGTLPGGSLPCLISNYSNIQPSLYTFDLSFGYDTGDDPVNDYLKHIGVQLVVQNVADRTPAFQYRISTGGGNPATFDILKNYGGRTVSVILTKTW*
Ga0137361_105618932	3300012362	Vadose Zone Soil	AAAVGTLPGGTFPCAISNYTNVEPSQYTFDLSLGYDTGDAPANDYLKHLGIQVVIQNLMDRQPAFEYRTSTGGGNPAAFDILKSDQGRTVSLILTKTW*
Ga0150984_1161225741	3300012469	Avena Fatua Rhizosphere	GYTNIEPSWLTFDLSLGYDTGDDPANDYLKHLGVQLVISNLMDKHSPFEYRIGTGGGNPSAMDILKPNNGRTISLILTKTW*
Ga0137397_112615021	3300012685	Vadose Zone Soil	YFHTQTAPPNVNFQCVAAGATVPAGTFPCLISNYSNIQPSLYTFDLSLGYDTGDDPVNDYLKHIGVQLVVQNVANKVPAFQYRISTGGGNPATFDILKNYGGRSFSIIVTKTW*
Ga0137413_115477761	3300012924	Vadose Zone Soil	GPWSLTGFMDYSSHYFHTQNAPPQVNLQCTTTGGTLPGGSLPCLISNYSNLQPSLYTFDLSLGYDTGDDPVNDYLKHIGVQLVVQNIADKTPAFQYRISTGGGNPATFDILKNYGGRTVSIIVTKTW*
Ga0137407_104145122	3300012930	Vadose Zone Soil	SQYTFDLSAGYDTGDTPGNEYLRNIGIQFVMQNVMDKHAAFEYRASATAGNPAAYDILKSIQGRTMSIIVTKTW*
Ga0153915_111290222	3300012931	Freshwater Wetlands	VNFQCQTAGGTLPGGTFPCAISNYTNIQPSHYTFDLSLGYDTGDTPANDYLKNIGVQVVIQNLLDRDPAFQYKIGGPGGPASYDVLKSYGGRSVTLILTKTW*
Ga0137410_102971562	3300012944	Vadose Zone Soil	IEPSFYTFDLSLGYNSRDVPANEYLRNIGVQLVIQNVMDRHSPFEYRTSTGGGNPAAMDILKSNQGRTISIIVNKEW*
Ga0137410_114242001	3300012944	Vadose Zone Soil	QTAPANVNFQCTAAGGTIPSTTVSFPCAITNYSNMQPSMYTFDLSLGYDTGDDPVNDYLKHIGVQVVVQNVMDRLPAFQYRISTGGGNPATFDILKSNQGRTISLILTKTW*
Ga0137410_114277491	3300012944	Vadose Zone Soil	NIQPSLYTFDLSLGYDTGDDPVHDYLTHIGVQVMVQNVLDRLQAFQYRISTGGGNPATFDILKSNQGRTISIILTKTW*
Ga0137410_118956721	3300012944	Vadose Zone Soil	DLSIGYDTGEQPVNNYLKHIGIQLVVQNIMDKHPPFEYRIGTGGGNPTAFDLTKSDQGRTFGLILTKTW*
Ga0164303_100981391	3300012957	Soil	CTVAGGTLPGGSFPCLISNYSNIQPSLYTFDLSLGYDTGDDPVNDYLKHIGVQLVVQNIMDKTPAFQYRISTGGGNPATFDILKNYGGRTVSVILTKTW*
Ga0164303_110186761	3300012957	Soil	AINNYSNIEPSQYTFDLSLGYDTGDNPANDYLKHVGVQLVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRMISLIVTKTW*
Ga0126369_119156851	3300012971	Tropical Forest Soil	YTFDLSFGYDTGDTPANQYLRNVAVQLVFQNIMDKHPPFEYRISTGGGNPTAFDILKTNQGRTISIIVTKTW*
Ga0164309_118802012	3300012984	Soil	QCVTAGGTVGGGTFPCLITNYNNIEPSYYTFDLSVGYDTGDDPANTYLKHLGIQLVVQDLLDRHPAFEYRIGTGAGNPAAFDISKNDSGRTIGLILTKTW*
Ga0164304_103405892	3300012986	Soil	FHTQSAPPNVNFQCVAAGGTVGGGSLPCAISNYTNLEPSQYTFDLSLGYDTGDTPANDYLKHLGIQLVIQNLLDRQPAFEYRTSTGGGNPAAFDILKSDQGRTVSFILTKTW*
Ga0164304_112142131	3300012986	Soil	NNYSNLQPPQYTFDLSIGYDTAETPANDYLKHVGVQLVIQNIMDKAPAFQYRIQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0164305_119640772	3300012989	Soil	QYTFDLSLGYDTGDTPANDYLKHLGIQIVIQNLLDRQPAFEYRTSTGGGNPAAFDILKSDQGRTVSFILTKTW*
Ga0157378_112614421	3300013297	Miscanthus Rhizosphere	GGTIGGGTNACALSNYTNIEPSYYTFDVSVGYDTGDTPSNQYLRNIGIQLVVQNIMDKHPPFEYRIATGGGNPAAFDILKSIFGRLVQVRILKTW*
Ga0157378_117698731	3300013297	Miscanthus Rhizosphere	FPCAINNYSNIEPSQYTFDLSLGYDTGDNPANDYLKHVGVQLVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRMISLIVTKTW*
Ga0157372_114240162	3300013307	Corn Rhizosphere	GYDTGDDPVNDYLKHVGIQVVVQNLMNRHPAFEYRIGTGGGNPSALDILKSDQGRTISFILTKTW*
Ga0157375_124404582	3300013308	Miscanthus Rhizosphere	CLINNYSNLQPPQYTFDLSIGYDTAETPANDYLKHVGVQLVIQNIMDKAPAFQYRIQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0157375_125557381	3300013308	Miscanthus Rhizosphere	TNIEPSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNVMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW*
Ga0075322_11339851	3300014311	Natural And Restored Wetlands	STLSGGIFSCAINNYSNIILFWYTFDLSIGYDMGDEPANDYLKNIGIQLVVQNVMDRDLPFEYRISIGGGNPAAMDILKGDYRRTISLILTKTW*
Ga0157376_123306111	3300014969	Miscanthus Rhizosphere	NYTNIEPSQYTFDLSLGYDTGDNPANDYLKHIGLQLVVQNLLDKDPAFQFRTQAQGGNPAAYDILKSYQGRTISLILTKTW*
Ga0137409_106439081	3300015245	Vadose Zone Soil	SHFFHTQSAPAMVNFQCVSAGSTLPGGTFPCSISNYTNVEPSQYTFDLSLGYDTGDAPANDYLKHLGIQVVIQNLLDRQPAFEYRTSTGGGNPAAFDILKSDQGRTISFILTKTW*
Ga0132258_138033641	3300015371	Arabidopsis Rhizosphere	GGTVGGGTFACAITGYTNIEPSYYTFDLSLGYDTGDSPANTYLKNIGIQLVIQNIMDKHPPFEYRIGTGAGNPATFDISKSDVGRTVGLILTKTW*
Ga0132256_1003813581	3300015372	Arabidopsis Rhizosphere	PNVNFQCTTTGGTIPGGSLPCLINNYTNIEPSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNIMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW*
Ga0132255_1054745681	3300015374	Arabidopsis Rhizosphere	TNIEPPWLTFDLSMGYDTGDEPANNYLKNIGIQLVISNIMNKHAAFEYRIGTGGGNPAAMDILKPNNGRTISMILTKTW*
Ga0187776_102728382	3300017966	Tropical Peatland	PQYMFDLSFGYDTGDSPENYYLKHLGIQLVIQNIMNKLPAFEYRISTGAGNPATFDISKSDQGRTIGLILTKTW
Ga0184615_102205781	3300018059	Groundwater Sediment	NGNFCAANGVTGGGSLPCAISNYSNLEPSWYSFDLSVGYDTGDQPANDYLKNIGIQLVVQNLTGKHPAFEYRISSGGGNPVAFDLLKPNQGRMYSFIVTKTW
Ga0193752_11323771	3300020027	Soil	TNIEPAWTTFDLSLGYDTGDDPANDYLKHLGIQVVISNILDKHAAFEYRTGTGGGNPAAMDILKPNNGRTISLILTKTW
Ga0184649_15561591	3300020068	Groundwater Sediment	GVTGGGSLPCAIGNYTNIEPSWYQFDLSVGYDTGDQPANDYLKNIGIQLVVQNIMDKHSPFEYRIGSGGGNPAAFDLLKPNQGRMYSLIVTKTW
Ga0210377_100217991	3300021090	Groundwater Sediment	NYTNIEPSWYQFDLSVGYDTGDQPANDYLKNIGIQLVVQNITGKHPAFEYRIASGGGNPAAFDILKPNQGRMYSLIVTKTW
Ga0210377_107065052	3300021090	Groundwater Sediment	QSHFFHTQTSPPNVNGNFCQSNGVSGGGTFPCAISNYSNIEPPWYSFDLSFGYDTGDDPANDYLKHIGLQLVVQNVTGKHPAFEYRVASGGGNPTAYDLLKPNQGRMLSLIVTKTW
Ga0182009_103709662	3300021445	Soil	ALSNYTNIEPSYYTFDLSVGYDTGDAPSNQYLRNIGIQLVVQNIMDKHPPFEYRTATGGGNPAAFDILKSEFGRLIQLRILKTW
Ga0126371_112687961	3300021560	Tropical Forest Soil	NVNGQCLATNPNLGGGSSTCAIECDSNIEPSYYTFDLSFGYDTGDTPANQYLRNVAVQLVFQNIMDKHPPFEYRISTGGGNPTAFDILKTNQGRTISIIVTKTW
Ga0242657_11996841	3300022722	Soil	VNFQLTTAGGTVAGGTLPCAISNYTNIEPSYYTFDLSLGYDTGDSPGNDYLKHVGIQLVIADIMDKHPPFEYRTSTGGGNPSAFDITKGLQGRTFNLVITKTW
Ga0207693_107835452	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VQCCRIRRLPAALLQTQNAPPNVNFACLTTGGTIGGGSLPCAINNYSDIEPAYYTFDLSFGYDTGDNTANYYLKHVGIQFVIQNLMNRLPAFEYRIGTGAGNPATFDIAKSDQGRTFGLIVTKTW
Ga0207662_102311072	3300025918	Switchgrass Rhizosphere	LINNYSNLQPPQYTFDLSIGYDTAETPANDYLKHVGVQLVIQNIMDKAPAFQYRIQAQGGNPAAYDILKSYQGRTISLILTKTW
Ga0207662_105770142	3300025918	Switchgrass Rhizosphere	GGTIPGGSFPCAINNYSNLEPSSYLFDVSLGYDTGDDPANDYLKHIGIQLVVQNIMNRSPAFEYRISTGGGNPAAFDILKNYQGRTVSLILTKTW
Ga0207664_112378112	3300025929	Agricultural Soil	CISSGSSVGGGTFPCAINNYTNIEPAETTFDLSLGYDTGDDPANYFLKHVGIQLVVTNLLDKHPPFEYRTSTGGGNPAAFDILTGLQGRFFTLILTKTW
Ga0207686_101086172	3300025934	Miscanthus Rhizosphere	MDYQSHFFHAQAAPPQVNLQCTSAAGTLPGGSFPCAINNYSNIEPSQYTFDLSLGYDTGDNPANDYLKHVGVQLVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRMISLIVTKTW
Ga0207686_111077661	3300025934	Miscanthus Rhizosphere	LPCLVSNYTNIEPAWLTFDLSMGYDTGDTPANDYLKNMGIQLVISNIMDKHSPFEYRTGTGGGNPSAMDILKPNNGRTISVILTKTW
Ga0207665_114038431	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	SDGTFSATGYMNYVSHFFHTQQAPPNVNGQCIAPGSSTGGGTFPCAIEGYSNIEPSYYLFDLSMGYDTGDDPANAYLKHVGIQLVVQNIMDKHPPFEYRIGTGGGNPAAFDITKSDQGRTIGLIVTKTW
Ga0207677_117608351	3300026023	Miscanthus Rhizosphere	IEPSQYTFDLSLGYDTGDDPANNYLKHIGIQLVVQNIFDRDPAFEYRISTGGGNPAAYDILKSYQGRTISLILTKTW
Ga0207703_119161501	3300026035	Switchgrass Rhizosphere	LQCTSAAGTLPGGSFPCAINNYSNIETSQYTFDLSLGYDTGDNPANDYLKHVGVQLVIQNIMDRHPAFEYRISTGGGNPAAYDITKSLQGRMISLIVTKTW
Ga0207683_103521613	3300026121	Miscanthus Rhizosphere	GTTPGGSLPCLVSNYSNIEPAWLTFDLSIGYDTGDTPVNDYLKNMGIQLVISNIMDKHSPFEYRIGTGGGNPAAMDILKPNNGRTISLILTKTW
Ga0209131_10459061	3300026320	Grasslands Soil	PWSVTGFMDYQSHFFHTQGAPPNVNFQCVAAGGTLPGGTFPCLISNYTNIEPSQYTFDLSMGYDTGDDPVNDYLKHIGIQVVVQNIVDKHPAFEYRTSTGGGNPAPYDILKSNQGRTISLILTKTW
Ga0179587_110975421	3300026557	Vadose Zone Soil	FQCVAAGGTVGGGTLPCAISNYTNIEPSQYTFDLSLGYDTGDAPANDYLKHLGIQIVIQNLMDRQPAFEYRTSTGGGNPAAFDILKSDQGRTISFIVTKTW
Ga0268265_111411542	3300028380	Switchgrass Rhizosphere	QCTATGGTIPGGSLPCLINNYTNIEPSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNVMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW
Ga0265316_112108312	3300031344	Rhizosphere	TAGGTIGGGSLPCLISNYSDIEPSWYSFDLSFGYDTGDDPANSYLKHVGIQLVVQNLMDRHPAFEYRISTGAGNPTTFDLSKSDQGRTIGLILTKTW
Ga0310813_111342741	3300031716	Soil	VTAGGTLPGGTFPCAINNYTNIEPSQYTFDISLGYDTGDDPASDYLKHIGVQLVVQNFLDKKPAFEYRTSTGGGNPAPYDILKSNQGRTISLVLTKTW
Ga0307478_116289862	3300031823	Hardwood Forest Soil	YNTGDIPANDYLKHISIQLVVQNIADKLPAFEYRIGTGGGNPATFDISESDLGRQIGIILTKTW
Ga0318512_106101971	3300031846	Soil	SWYTFDLSMGYDTGDNPANEYLRNIGVQLVIQNIFDKHPAYEYRVSTGGGNPVAFDLSKSNQGRTISVIVTKTW
Ga0306926_115436322	3300031954	Soil	CLISGYNNLEPYYYTFDLSIGYDTGDMPANEYLKNLRIQLVAQNIMDRHPAFEYRIGTGGGNPAAFDILKSNQGRTMTLVLTKQW
Ga0308176_117055571	3300031996	Soil	CLVTGYTNIVPSYYTFDLSFGYDTGDDPANDYLKHLGVQLVIQNLMDKHPPFEFRTSTGGGNPSAFDILKSDQGRSISVILTKTW
Ga0310811_109776832	3300033475	Soil	EPSQYTFDLSLGYDTGDDPANDYLKHIGLQLVVQNVMDRAPAFEYRTSTGGGNPAPYDILKSYQGRTISVILTKTW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064042

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences