Metagenome Family F064051

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064051
Family Type	Metagenome
Number of Sequences	129
Average Sequence Length	62 residues
Representative Sequence	MDVRFGSKADICAATAHVRFTPNSDRESGLPQTAMSALPPKADMCGALAHVCFGPIADI
Number of Associated Samples	95
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.04 %
% of genes near scaffold ends (potentially truncated)	69.77 %
% of genes from short scaffolds (< 2000 bps)	70.54 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.039 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (24.031 % of family members)
Environment Ontology (ENVO)	Unclassified (28.682 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.512 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.75% β-sheet: 0.00% Coil/Unstructured: 94.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF04392	ABC_sub_bind	11.63
PF07045	DUF1330	3.88
PF01161	PBP	3.10
PF01266	DAO	3.10
PF13847	Methyltransf_31	2.33
PF00211	Guanylate_cyc	2.33
PF00072	Response_reg	1.55
PF00232	Glyco_hydro_1	1.55
PF13545	HTH_Crp_2	1.55
PF00005	ABC_tran	1.55
PF00753	Lactamase_B	1.55
PF13417	GST_N_3	1.55
PF06863	DUF1254	1.55
PF05708	Peptidase_C92	0.78
PF03976	PPK2	0.78
PF00497	SBP_bac_3	0.78
PF00873	ACR_tran	0.78
PF05239	PRC	0.78
PF00583	Acetyltransf_1	0.78
PF04343	DUF488	0.78
PF09423	PhoD	0.78
PF00839	Cys_rich_FGFR	0.78
PF00011	HSP20	0.78
PF16914	TetR_C_12	0.78
PF02371	Transposase_20	0.78
PF12146	Hydrolase_4	0.78
PF12706	Lactamase_B_2	0.78
PF05175	MTS	0.78
PF13581	HATPase_c_2	0.78
PF13414	TPR_11	0.78
PF00580	UvrD-helicase	0.78
PF04964	Flp_Fap	0.78
PF08448	PAS_4	0.78
PF12860	PAS_7	0.78
PF04909	Amidohydro_2	0.78
PF04828	GFA	0.78
PF07719	TPR_2	0.78
PF12681	Glyoxalase_2	0.78
PF13649	Methyltransf_25	0.78
PF08241	Methyltransf_11	0.78
PF11026	DUF2721	0.78
PF07813	LTXXQ	0.78
PF08734	GYD	0.78
PF00884	Sulfatase	0.78
PF09948	DUF2182	0.78
PF07366	SnoaL	0.78
PF03466	LysR_substrate	0.78
PF13924	Lipocalin_5	0.78
PF13185	GAF_2	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	11.63
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	3.88
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	3.10
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.10
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.33
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	1.55
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.55
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.78
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.78
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.78
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.78
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.78
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.78
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.04 %
Unclassified	root	N/A	44.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.04 %
Unclassified	root	N/A	44.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.04 %
Unclassified	root	N/A	44.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.53 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.68 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.78 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.16 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.63 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.33 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.55 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.78 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.33 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.55 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.78 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.33 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.55 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.78 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.78 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.78 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.78 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.33 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.55 %
Hyphomicrobium sp. CS1BSMeth3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. CS1BSMeth3	0.78 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.78 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.78 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.78 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000043\|ARcpr5yngRDRAFT_c000989	All Organisms → cellular organisms → Bacteria	3268	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1036003	Not Available	771	Open in IMG/M
3300000652\|ARCol0yngRDRAFT_1008748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	731	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1024356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1133	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1084089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1009549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1016	Open in IMG/M
3300000890\|JGI11643J12802_11057769	Not Available	559	Open in IMG/M
3300000891\|JGI10214J12806_10860060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1046	Open in IMG/M
3300004156\|Ga0062589_100000874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7673	Open in IMG/M
3300004463\|Ga0063356_102948254	Not Available	733	Open in IMG/M
3300004479\|Ga0062595_100627829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	844	Open in IMG/M
3300005294\|Ga0065705_10111126	All Organisms → cellular organisms → Bacteria → Proteobacteria	4261	Open in IMG/M
3300005332\|Ga0066388_100474224	Not Available	1891	Open in IMG/M
3300005332\|Ga0066388_100484330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1875	Open in IMG/M
3300005332\|Ga0066388_100663308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1656	Open in IMG/M
3300005332\|Ga0066388_101854920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1074	Open in IMG/M
3300005332\|Ga0066388_102450395	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300005332\|Ga0066388_105690581	Not Available	631	Open in IMG/M
3300005332\|Ga0066388_107239888	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005332\|Ga0066388_107707752	Not Available	539	Open in IMG/M
3300005457\|Ga0070662_101313371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	623	Open in IMG/M
3300005530\|Ga0070679_100084159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3169	Open in IMG/M
3300005713\|Ga0066905_100296236	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300005713\|Ga0066905_100409700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1102	Open in IMG/M
3300005713\|Ga0066905_100428321	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1081	Open in IMG/M
3300005764\|Ga0066903_101748797	Not Available	1186	Open in IMG/M
3300005764\|Ga0066903_104321782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	759	Open in IMG/M
3300005764\|Ga0066903_105038596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300005764\|Ga0066903_106875591	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005764\|Ga0066903_106922584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300005841\|Ga0068863_100469840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1236	Open in IMG/M
3300005983\|Ga0081540_1072378	All Organisms → cellular organisms → Bacteria → Proteobacteria	1588	Open in IMG/M
3300006049\|Ga0075417_10109079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1261	Open in IMG/M
3300006049\|Ga0075417_10596295	Not Available	562	Open in IMG/M
3300006058\|Ga0075432_10215545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300006172\|Ga0075018_10308253	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300006196\|Ga0075422_10024220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2080	Open in IMG/M
3300006844\|Ga0075428_102407120	Not Available	540	Open in IMG/M
3300006845\|Ga0075421_101847308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300006846\|Ga0075430_100141282	Not Available	2005	Open in IMG/M
3300006846\|Ga0075430_100362509	Not Available	1197	Open in IMG/M
3300006847\|Ga0075431_101768612	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300006854\|Ga0075425_101031769	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300006871\|Ga0075434_100199115	All Organisms → cellular organisms → Bacteria	2022	Open in IMG/M
3300006904\|Ga0075424_101941167	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300006969\|Ga0075419_10041764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2870	Open in IMG/M
3300006969\|Ga0075419_10073239	Not Available	2173	Open in IMG/M
3300007076\|Ga0075435_100904888	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300007076\|Ga0075435_101079628	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300007076\|Ga0075435_101865182	Not Available	528	Open in IMG/M
3300009094\|Ga0111539_10223008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2195	Open in IMG/M
3300009100\|Ga0075418_11730829	Not Available	680	Open in IMG/M
3300009100\|Ga0075418_11805300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	665	Open in IMG/M
3300009100\|Ga0075418_12280174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	591	Open in IMG/M
3300009147\|Ga0114129_10301291	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300009147\|Ga0114129_11377672	Not Available	871	Open in IMG/M
3300009162\|Ga0075423_11665799	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300009553\|Ga0105249_10833559	All Organisms → cellular organisms → Bacteria → Proteobacteria	987	Open in IMG/M
3300009792\|Ga0126374_10845506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. CS1BSMeth3	704	Open in IMG/M
3300009792\|Ga0126374_11050282	Not Available	642	Open in IMG/M
3300009792\|Ga0126374_11298294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300009792\|Ga0126374_11581960	Not Available	541	Open in IMG/M
3300010043\|Ga0126380_10110369	All Organisms → cellular organisms → Bacteria → Proteobacteria	1674	Open in IMG/M
3300010043\|Ga0126380_10616781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	857	Open in IMG/M
3300010360\|Ga0126372_10485628	Not Available	1155	Open in IMG/M
3300010361\|Ga0126378_12627254	Not Available	575	Open in IMG/M
3300010362\|Ga0126377_10312053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1555	Open in IMG/M
3300011119\|Ga0105246_11534909	Not Available	627	Open in IMG/M
3300012486\|Ga0157331_1007471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	735	Open in IMG/M
3300012948\|Ga0126375_11604666	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012986\|Ga0164304_11096252	Not Available	637	Open in IMG/M
3300012988\|Ga0164306_10909567	Not Available	718	Open in IMG/M
3300013297\|Ga0157378_12612567	Not Available	557	Open in IMG/M
3300015371\|Ga0132258_11486944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1711	Open in IMG/M
3300015372\|Ga0132256_100166267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2229	Open in IMG/M
3300015373\|Ga0132257_103816356	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300015374\|Ga0132255_101089782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1200	Open in IMG/M
3300015374\|Ga0132255_101456026	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300016294\|Ga0182041_10933138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	782	Open in IMG/M
3300017947\|Ga0187785_10062436	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300018058\|Ga0187766_10234809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1168	Open in IMG/M
3300018064\|Ga0187773_10863297	Not Available	581	Open in IMG/M
3300026023\|Ga0207677_11650064	Not Available	594	Open in IMG/M
3300026121\|Ga0207683_10887361	Not Available	828	Open in IMG/M
3300027378\|Ga0209981_1061783	Not Available	574	Open in IMG/M
3300027665\|Ga0209983_1117097	Not Available	607	Open in IMG/M
3300027873\|Ga0209814_10038594	Not Available	1983	Open in IMG/M
3300027880\|Ga0209481_10045964	Not Available	2013	Open in IMG/M
3300027907\|Ga0207428_10137059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1871	Open in IMG/M
3300027909\|Ga0209382_10284719	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300028828\|Ga0307312_11043546	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300028885\|Ga0307304_10607758	Not Available	507	Open in IMG/M
3300031446\|Ga0170820_15642468	Not Available	813	Open in IMG/M
3300031777\|Ga0318543_10314187	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	701	Open in IMG/M
3300031835\|Ga0318517_10583924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300031908\|Ga0310900_10821038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	753	Open in IMG/M
3300031944\|Ga0310884_10259720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	953	Open in IMG/M
3300031944\|Ga0310884_10564316	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300031946\|Ga0310910_10556397	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300031954\|Ga0306926_10953068	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300032012\|Ga0310902_10377333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	896	Open in IMG/M
3300032180\|Ga0307471_104043713	Not Available	518	Open in IMG/M
3300033289\|Ga0310914_10549022	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300033412\|Ga0310810_11065479	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.91%
Host-Associated	Host-Associated	41.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.14%
Plants	Host-Associated → Plants	41.09%
Aquatic	Environmental → Aquatic	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.85%
Sediment	Environmental → Aquatic → Sediment	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.13%
Loam	Environmental → Terrestrial → Soil → Loam	18.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.10%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.78%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	24.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.20%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.10%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.33%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000652	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA	Host-Associated	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0084712	3300000041	Arabidopsis Rhizosphere	VRFGSKADICAATSHVRFTPDSDRESGHPQTVMSALPPKADVCAALADVSYGPKADIAIVSGFMPYKRE*
ARcpr5yngRDRAFT_0009894	3300000043	Arabidopsis Rhizosphere	MSPLNVRFGSKPDRCIAKSDVRFTPNSDRESGFPQEVMSALTPKADMCSALANVCYGPIADIT*
AF_2010_repII_A01DRAFT_10360032	3300000580	Forest Soil	CFGSKADICAAKSDVRFTPNSDRKSGVPHKVTSALPPKADMCGAKRNVRFGPKADIMAHGG*
ARCol0yngRDRAFT_10087481	3300000652	Arabidopsis Rhizosphere	MSPLNVRFGSKPDRCVAKSDVRFTPNSDRESGFPQEVMSALTPKADMCSALANVCYGPIADIT
AF_2010_repII_A100DRAFT_10243561	3300000655	Forest Soil	FGSKADTCAAKRHVRFTPNSDRESEIPQKAMSALPPKADMCGATRDVRFGPIADIYHRVLAKPANL*
AF_2010_repII_A100DRAFT_10840892	3300000655	Forest Soil	LIRPDVRFGSKADICGAISHVRFTPNSDRESEIPQRALSALPPKADICSASAHVRFIGS*
AF_2010_repII_A10DRAFT_10095493	3300000816	Forest Soil	MHKIAVKYPAHVRFGSKADMCAAKRHVCFTPNSDRESEIPQMAMSALPPKADMCGANTNVRFGP*
JGI11643J12802_110577692	3300000890	Soil	RFGSKADICAATSHVRFTPKSDRESVIPQKAMSALHPIADMCGATSDVRFGPIADID*
JGI10214J12806_108600603	3300000891	Soil	MSAWSEADSCAAKSDVRFAPNSDRERRFPQNVMSALPPKADMCSALAHVSFGPEADIALAVLDDS
JGI1027J12803_1020326901	3300000955	Soil	MERMHVGFGSKADICRATAHVRFAPDSNRESGFPHKVMSALPLKANMCSALAHVC*
Ga0062589_10000087413	3300004156	Soil	MSAKGSEADMCVAISDVRFTPNGDRESGHPHKVMSALPPKADMCSARAHVCYGP
Ga0063356_1029482542	3300004463	Arabidopsis Thaliana Rhizosphere	MEAAADVRFGSKADICGATSHVRFSPDSDHESEIPQKAMSALPPKADMCGATRHVRFVPKADMRASYGVN*
Ga0062595_1006278292	3300004479	Soil	ITACLRDVRFGSKADMCGAKRHVRFTPNSDRESGFPQQATSALPPEADMCGALAHVCFGPIADIERA*
Ga0066814_100562371	3300005162	Soil	VRFGSKADMCGATDYVRFAPNSDRKSRLAQPVMSALPPKADMCSAVADVCYGPKADMYNNY*
Ga0065705_101111265	3300005294	Switchgrass Rhizosphere	MLNVRFGSKADMCNASTHVRFTPNSDRESDFPQTVMSALPPKADMCGAMGHVCFGPEADIVRCTAGTQFADYSEAFGK*
Ga0066388_1004742241	3300005332	Tropical Forest Soil	DVRFGSKADICGAPTHVRFTPNSDRKSGLPQKLMSALPPKADMCSALAHVCFGPIADI*
Ga0066388_1004843302	3300005332	Tropical Forest Soil	MEVAVDVRFGSKADICAAQRHVRFSPNSDRKSGLPHKAMSALPPKADMCGALVHVCFGPKADMR*
Ga0066388_1006633081	3300005332	Tropical Forest Soil	VRFGSKADMCAAKRHVRFTPNSDRKSGHAQTVMSALRPKADMCSALADVCFGPIADEKPGP*
Ga0066388_1018549201	3300005332	Tropical Forest Soil	YVRFGSKADMCVAKSDVRFTPNSDRESGLRQEVMSASPPKADMCSALANVCYGPIADMRQSIG*
Ga0066388_1024503951	3300005332	Tropical Forest Soil	VASHFTPKSGATRDVRFGSKADMCSGRTHVRFTPNSDRESGIPEKVMSALPLKADMCSALGDVRFGPKAD
Ga0066388_1029856022	3300005332	Tropical Forest Soil	LIGLDADEINVRFGSKADMCAALGHVRFASNSDRESGLPQTVMSALPLKADMCGAMAYVR
Ga0066388_1056905812	3300005332	Tropical Forest Soil	FGSKADICTAPAHVRFTPNSDRKSGLPAKAMSALPPKADMCSASGNVRFGPIADIP*
Ga0066388_1072398881	3300005332	Tropical Forest Soil	DVRFGSKADMCVAKNDVRFTPNSDRKSGLSQWAMSALPPKADMCSAHAHVCYGPIADMEPRPLICSLTV*
Ga0066388_1077077521	3300005332	Tropical Forest Soil	ADICIAKSDVRFTPNSDRESGHPQTVMSALPPKADICGANADVCFGPKADMVPFWCRLG*
Ga0070713_1021150482	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VDICSAIRHVRFTPNNDRESGFSHKVMSALPPKADMCSATRDVRFGPIAD
Ga0070694_1007670482	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MCGATDYVRFAPNSDRKSRLAQPVMSALPPKADMCSAVADVCYGPKADMYNNY*
Ga0070662_1013133713	3300005457	Corn Rhizosphere	GSKADICGATSHVRFTPDSDRESEFLRKVMSALPPKADMCGATKDVRYGPKADMTS*
Ga0070679_1000841598	3300005530	Corn Rhizosphere	MDVRFGSEADICAATSHVRFTPNSDRKSRHAANGHVCFHPKADMCSALAHVCFGPIA
Ga0070684_1000240491	3300005535	Corn Rhizosphere	LIEINVPESNVRFGSKADMCVAKPHVRFTPNSDRKSGHPQNAMSALPPKADMCGAQAHVGFGPIAD
Ga0066905_1002962364	3300005713	Tropical Forest Soil	ADMCGAKWHVRFTPNSDRKSDFPEKAMSALPPKADMCSALADVCFGPGADVWTQFDVDGA
Ga0066905_1004097003	3300005713	Tropical Forest Soil	NVRFGSKADICAAKSDVRFTPNSNRESKHPQTVMSALFPKADVCGANLNVRFGPKADTDIF*
Ga0066905_1004283211	3300005713	Tropical Forest Soil	VRQKTQANVRFGSEADIGAATSHVRFTLNSDRESEIPQKAMSALPPKADMCGALAYVYYGPIADIAPR*
Ga0066905_1010237962	3300005713	Tropical Forest Soil	NVRFGSKADICAATSHVRFTPNSDRESGLPQKVMSAFHPKADMRSALVNVR*
Ga0066905_1018587451	3300005713	Tropical Forest Soil	KADICAATSHVRFTPNSDRESEIPQKAMSALPPKADMCGARAHVCYGPKADIPGA*
Ga0066903_1017487971	3300005764	Tropical Forest Soil	MDVRFGSKADICAATAHVRFTPNSDRESGLPQTAMSALPPKADMCGALAHVCFGPIADI
Ga0066903_1034434321	3300005764	Tropical Forest Soil	MCAALVHVRFGSKADMCAAKRHVRFTPNSDRESEIPQKAMSALPPKADMCGATGDVRFGPKAD
Ga0066903_1043217821	3300005764	Tropical Forest Soil	KADICAAKSDVRFAPNSDRESRHPQTVMSALPPKADMCGATSDVRFGPKADIGDE*
Ga0066903_1050385962	3300005764	Tropical Forest Soil	FGSKADICGAKADVRFTPNSDRKSGLLQTVMSALPPKADMCSALAHVCFGPIADIERA*
Ga0066903_1068755911	3300005764	Tropical Forest Soil	MGHIGADDVRFGSEADICAAKHHVRFTPNSDRESGHQQPVMSALPPKADMCSALAHVCFGPKADI
Ga0066903_1069225842	3300005764	Tropical Forest Soil	MCVAKSNVRFAPNSDRESGHRQTVMSALPPKADMCSALAHVCFGPIADIATLRFVQTVA*
Ga0068863_1004698403	3300005841	Switchgrass Rhizosphere	MSTANVRFGSKADICGATSHVRFTPNSDRESGFPHTVMSALPPKAGMCAALANVCFGPKADIP
Ga0081540_10723783	3300005983	Tabebuia Heterophylla Rhizosphere	MEEPSTASEADICAAKSDVRFTPNSDRKSGHRQTVMSALPLKAGMCSAIAHVRFGPKADIVYLFD
Ga0075417_101090793	3300006049	Populus Rhizosphere	LADICSAKGHVRFAPNSDRESGFPQTVMSALPPKADMCSARGHVCFGPKADILPTDWY*
Ga0075417_105962951	3300006049	Populus Rhizosphere	MGTDVRFGSKADICGAPTRVRFTPNSDRESRHAQMVMSALPPKADMCSATRDVRFGPKAD
Ga0075432_102155452	3300006058	Populus Rhizosphere	MGVPAYANLVRFGSKADICGATSHVRFTPNSDRKSGPPQNAMSALPPKADMCSALAHVCFGPIADI
Ga0075018_103082531	3300006172	Watersheds	LFGSLTLYLVDVRFGSKADMCAAKRHVRFTPNSDRESGFSQTVMSASPLKADMCGATRDVRYGPIADI
Ga0075422_100242202	3300006196	Populus Rhizosphere	MADVRFGSKVDMCSAIPDVRFTPNSDRKSRHAQMVMSALPPKADMCGATSDVRFGPKADIGASDI*
Ga0075428_1024071202	3300006844	Populus Rhizosphere	YVRFGSLADICSAKGHVRFAPNATAKADFPQTVMSALPPKADMCSALVDVRFGPRADIDR
Ga0075421_1018473082	3300006845	Populus Rhizosphere	LGGVVDRLANVRFGSLADICSAKGHVRFTPNSDRESGFPHKVMSALPPKADMCSALAHVCFGP
Ga0075430_1001412823	3300006846	Populus Rhizosphere	GSKADICAANSDVRFTPNSDRKSGLPRKVVSAFPPKADVCGANHYVCFGPIADIRELQIHRRWANYF*
Ga0075430_1003625094	3300006846	Populus Rhizosphere	VRFGSKADICAAKSHVRFTPDNDRESGFPHKVMSALPPKADMCSAVPHIRFGPKADIASL
Ga0075431_1017686122	3300006847	Populus Rhizosphere	RAGNVRFGSEADMCGATSHVRFAPNSDRESGFPQTVMSALPPRADMCGATTDVCFGP*
Ga0075425_1010317691	3300006854	Populus Rhizosphere	LENARKPNVRFGSDADICSAKGHVRFTPDSDRQSEFPQKAMSALPPKADMCGALADVRFGPKADI
Ga0075434_1001991151	3300006871	Populus Rhizosphere	DICSAKGHVRFAPNSDRESGFPHKVMSALPPKADMCSAVPHIRFGPKADIASL*
Ga0075426_111597091	3300006903	Populus Rhizosphere	VSFQDRLNVRFGSKADMCAAKRHVRFTPNSDRESGFPHKVMSALPPKADTCSALAHVC
Ga0075424_1019411671	3300006904	Populus Rhizosphere	VRFGSKADIGAATSHVRFTPNSDRESDFLQTVMSALPPKADMCSAQAHVRFGPKADIGP*
Ga0075436_1006677781	3300006914	Populus Rhizosphere	GSLADMCSAKGHVRFAPNSDRESGFPQKVMSALPPKADMCGAARDVRFGP*
Ga0075419_100417644	3300006969	Populus Rhizosphere	MGKDLTHVRFGSKADICSAKGHVRFAPNSDRESEFPQTGMSALPPKADMCGAATDVRFGPIADIER
Ga0075419_100732394	3300006969	Populus Rhizosphere	LEELSDVRFGSKADICAANSDVRFTPNSDRKSGLPRKVVSAFPPKADVCGANHYVCFGPIADIRELQIHRRWANYF*
Ga0075435_1009048882	3300007076	Populus Rhizosphere	LNFDVRFGSKADICAAKSHVRFTPNSDRESGFPHKVMSAFPPKADTCSALAHVCFGPTANIEASDI*
Ga0075435_1010796282	3300007076	Populus Rhizosphere	DVRFGSKADIGAATSHVRFTPNSDRESDFLQTVMSALPPKADMCSAQAHVRFGPKADIGP
Ga0075435_1018651822	3300007076	Populus Rhizosphere	MTNVRFGSKADICSATSDVRFTPNSDRESGLPQKVMSALPPKADMCGALAHVCFGPIADIAVRVLHV*
Ga0111539_102230081	3300009094	Populus Rhizosphere	DVRFGSKADICSAKSHVRFTPNCDRKSGFPHKVMSALPPKADMRGAARDVRFGPEAIVLLS*
Ga0075418_117308291	3300009100	Populus Rhizosphere	VSAVTGNVRFGSKADIYSAKGHVRFTPNSDRESEFPQTGMSALPPKADMCGAATDVRFGPIADIER
Ga0075418_118053002	3300009100	Populus Rhizosphere	GSKADMCGAKRHVRFTPNSDRKSGFPRKVMSALPPKADICSAAAHVCFGPKADIRL*
Ga0075418_122801741	3300009100	Populus Rhizosphere	MSALPLKADMCGATSHVRFTPNCDRKSGYLRLVMSALPLKADMCSAVPYVRFGPIADI
Ga0114129_103012911	3300009147	Populus Rhizosphere	NRQRKRHVRFGSLADICSAKGHVRFAPNSDRESGFPHKVMSALPPKADMCGATTDVRYGPKADMRAS*
Ga0114129_113776721	3300009147	Populus Rhizosphere	GSKADICAAKSHVRFTPDNDRESGFPHKVMSALPPKADMCSAVPHIRFGPKADIASL*
Ga0111538_102807381	3300009156	Populus Rhizosphere	DIRAAKSDVRFTPNSDRESGFPQTVMSALPLKADMCSAVPHIRFGPKADIASL*
Ga0075423_116657992	3300009162	Populus Rhizosphere	LTSIMVLRDVRFGSKADIRTAKRNVRFTPNNDHESGFPHKVMSALPPKADVCGATRDVR*
Ga0105249_108335591	3300009553	Switchgrass Rhizosphere	MLHCSGHVRFGSKADVCVAKLHVRFTPNSDRKSGHPQNAMSALHPKADMCSATSNVRFG
Ga0126374_108455061	3300009792	Tropical Forest Soil	VRFGSKADMCVAKSDVCFTPNSDRESGLPQEVMSALPPKADMCGAIADVCFGPKADIDTRRSQIL*
Ga0126374_110502822	3300009792	Tropical Forest Soil	EADICAAISHVRFTPNSDRESGLAQTVMSALPPRADMCGATRNVRFGPKADIAIRRRKDRLTAS*
Ga0126374_112982941	3300009792	Tropical Forest Soil	LRIVRFGSIADMCSAIVHVRFTPNSDRESGLQQTVMSALPLKADMCSARAVVRFGPIADIEPHSVCEP
Ga0126374_115819601	3300009792	Tropical Forest Soil	VRSTLTNVRFGSKADMCNAIGHVRFTPNSDRESGLPQKLMSALPPKADMCGATRDVRFGPKAD
Ga0126380_101103691	3300010043	Tropical Forest Soil	VRFGSKADMCAAKRHVCFTPNSDRESEIPQKAMSALPPKADKCSAIANVRFGPKADIRQ*
Ga0126380_106167813	3300010043	Tropical Forest Soil	DVRFGSKADICSAQAHVRFTPNSDRESGLRQTVMSSLPLIADMCGARGDVRFGPKADIGYRTTVGLAR*
Ga0126372_104856282	3300010360	Tropical Forest Soil	LSHIIVNAHYGRYRNVRFGSKADMCAAKRNVRFTPNSDRESEIPQKAMSALPLKADMCGAKADVR*
Ga0126378_126272541	3300010361	Tropical Forest Soil	KADMCAAKSDVRFTPNSDRESRHPQKVMSALPPKADMCSAVGYVRFGPQADM*
Ga0126377_100519651	3300010362	Tropical Forest Soil	MDQGPSWLHHKSNVRFGSKADMCAAKRNVRFTPNSDRESEIPAKGHVRFTPKSGLCGAAMDVRYGPKA
Ga0126377_103120533	3300010362	Tropical Forest Soil	RFGSKADMCAAKRHVCFTPNSDRESEIPQKAMSALPPKADKCSAIANVRFGPKADIRQ*
Ga0126383_123989212	3300010398	Tropical Forest Soil	HVRFSPNSDRESGLRQTVVSALPQIADMCGARGDVRFGPKADIGYRTTVGLAR*
Ga0134127_105725102	3300010399	Terrestrial Soil	ERFSEALNLLASLADICSAKGCVRFAPNSDRESGLPHTVMSALPLKADACDANRQVRFGPIADIP*
Ga0105246_115349092	3300011119	Miscanthus Rhizosphere	MQAAQLMGKLVYVRFGSKADICGATSHVRFTPNSDRKSEISQTAMSALPPRADMCSANNDVRFG
Ga0157348_10060771	3300012479	Unplanted Soil	KADIGAATSHVRFTPNSDRESDFLQTVMSALPPKADMCSAQAHVRFGPKADIGP*
Ga0157331_10074712	3300012486	Soil	MSPLNVRFGSKPDRCVAKSDVRFTPNSDRESGFPQEVMSALTPKADMCSALANVCYGPIADI
Ga0157304_10633741	3300012882	Soil	QAHVRFGSKADLCVAKPHVRFTPNSDRKSGHSQNAMSALPPKADMCSALADVCFGPKANID*
Ga0126375_116046661	3300012948	Tropical Forest Soil	GRYRNVRFGSKADMCAAKRNVRFTPNSDRESEIPQKAMSALPLKADMCGAASDVRFGPIAEMTSV*
Ga0164302_119202221	3300012961	Soil	ASYVRFGSKADICNEKGHVRSAPNSDRESGHVPMVMSALTPKADVCGIRDVRFGPIADIN
Ga0164304_110962521	3300012986	Soil	MQAAQLMGKLVYVRFGSKADICGATSHVRFTPNSDRKSEISQTAMSALPPRADMCSANNDVRFGPEAD
Ga0164306_109095672	3300012988	Soil	MCAAKSDVRFTPNSDRKSEFPHKVMSALHPKADMCGALDHVRFGPKADISQLSAGRSSRAFG*
Ga0157378_126125671	3300013297	Miscanthus Rhizosphere	NVRFGSKADICAATAHVCFTSNSDRESEIPHKVMSALPPKADMCGAARDVRFGPKADMCVASAERLP*
Ga0132258_114869443	3300015371	Arabidopsis Rhizosphere	NLDRFLRERHVRFGSLADICAAISDVRFSPNNNRESGLPAKGMSALPLKADMCSALANVCYGP*
Ga0132256_1001662671	3300015372	Arabidopsis Rhizosphere	ADICGAKGHARFAPNSDRKSGLPQTVMSALPPKADMCSALAHVCFGPEADINSSTAS*
Ga0132256_1031486612	3300015372	Arabidopsis Rhizosphere	VGTTVVRFGSKADMCNAPAHARFAPDSDRKSGHPQNAMSALPPKADVCDANRQVCFGPKADIRRSQS
Ga0132257_1038163561	3300015373	Arabidopsis Rhizosphere	DVRFGSEADICSAIGDVRFTPDSDCESGLPQTVMSALPPKADMCSALANVRFGPIADMCGANGNVR*
Ga0132255_1010897823	3300015374	Arabidopsis Rhizosphere	MDVRYGSEADICSAKGHVRSTPNSDRESGHPQKVMSALPPKADMSSALAHVCFGPEAD
Ga0132255_1014560263	3300015374	Arabidopsis Rhizosphere	VRFGSKADICSATADVRFTLNSDRESGFLQKAMSALPPKADMCGAPAHVRFVPIADIAIKFV*
Ga0182041_109331381	3300016294	Soil	VHVRFGSKADMCSANEHVRFTPNSDRESGLRQPVMSALPPKADMCGALVHVCFGPKADIKLENEMSVCLP
Ga0187785_100624361	3300017947	Tropical Peatland	MLTKANVRFGSGADICAAIGDVRFPPNSDRESGPPEKVMSALLPKADVCGATADVCFGPKADIASLTR
Ga0187787_103617921	3300018029	Tropical Peatland	MCGAKGNVRYYPNSDRESEHQQIVMSALPPKADMCSAVVYVRFGPKADIAGA
Ga0187766_102348091	3300018058	Tropical Peatland	MCAANRYVRFTPNSDRKSGFPRNDMSALPPKADECSARTYVRFGPTADIRKMHWANRKT
Ga0187773_108632971	3300018064	Tropical Peatland	MSALPPKADMCGAKGHVRFAPNSDRESAFAQKVMSALPPKADMCGALAHVCFGPKADIVHAI
Ga0247791_10892942	3300023062	Soil	RFGSKADMCGATDYVRFAPNSDRKSRLAQPVMSALPPKADMCSAVADVCYGPKADMYNNY
Ga0207659_107777822	3300025926	Miscanthus Rhizosphere	FGSKADMCGATDYVRFAPNSDRKSRLAQPVMSALPPKADMCSAVADVCYGPKADMYNNY
Ga0207687_112319711	3300025927	Miscanthus Rhizosphere	MCSATSDVRFTPDNDRESGLSQVGMSALPPKADMCSALADARFGPKADIAANTEVSHV
Ga0207677_116500641	3300026023	Miscanthus Rhizosphere	SNVRFGSKADICAATAHVCFTSNSDRESEIPHKVMSALPPKADMCGAARDVRFGPKADMCVASAERLP
Ga0207683_108873613	3300026121	Miscanthus Rhizosphere	MPVHVRFGSKADICGATAHVRFTPNSDRESEFPQQATSALPPKADMCGATRDVRFGPIADIAKFS
Ga0209981_10617831	3300027378	Arabidopsis Thaliana Rhizosphere	GSWHSIVPGQSGTLEGAIDVRFRSQADICAANRCVRFTPNSDRKSGLSQKAMSALPRKEHMCTAIAHVSFGPEADMS
Ga0209983_11170972	3300027665	Arabidopsis Thaliana Rhizosphere	MCGATADVRFTLNSDRENGFPQKAMSALPPKADMCSALTHVRFVPIAEIRLPENWTAHLH
Ga0209814_100385941	3300027873	Populus Rhizosphere	GSKADICAANSDVRFTPNSDRKSGLPRKVVSAFPPKADVCGANHYVCFGPIADIRELQIHRRWANYF
Ga0209481_100459643	3300027880	Populus Rhizosphere	FGSKADICAANSDVRFTPNSDRKSGLPRKVVSAFPPKADVCGANHYVCFGPIADIRELQIHRRWANYF
Ga0207428_101370591	3300027907	Populus Rhizosphere	MLPNVRFGSKADIGAATTHVRFAPNSDRKSGPPLNAMSALPPKADIRGHDWNVCFGPKADIPC
Ga0209382_102847194	3300027909	Populus Rhizosphere	RFGSKADICAAKSHVRFTPDNDRESGFPHKVMSALPPKADMCSAVPHIRFGPKADIASL
Ga0307312_110435461	3300028828	Soil	KADICAAKSDVRFTPNSDHKSGFPHKVMSALPPKADIRSALTHVRFGPKADIR
Ga0307304_106077581	3300028885	Soil	VRFGSKADICAAKSDVRFTPNSDRKSGFPHKVMSALPPKADIRSALTHVRFGPKADIR
Ga0170820_156424681	3300031446	Forest Soil	VRFGSLADICNAKGHVRFAPNSDRESGFPQTVMSALPPKADMCSALGDVRFVPIADMDTCHL
Ga0318543_103141871	3300031777	Soil	MPDVRFGSKADICGAQRHVRFTPNSGSESGLPQTVMSALPPKADMCGATRDVRYGPT
Ga0318517_105839241	3300031835	Soil	VSPAVCRDVRFGPKADMCAARRNVRFTPNSDRESEIPQKAMSALAPKADMCSALADVCFGPIADMDVLTR
Ga0310900_108210381	3300031908	Soil	MCPSTGDVRFGSLADICAAKSDVRFTPNCDRESGLPQQVMSALHLKADMCTAQAHVCFGPKADIA
Ga0310884_102597202	3300031944	Soil	NVRFGSKADMCNASTHVRFTPNSDRESDFPQTVMSALPPKADMCIALAYVRFGPIADIL
Ga0310884_105643162	3300031944	Soil	VRFGSKADIGAATSHVRFTPNSDRESDFLQTVMSALPPKADMCSAQAHVRFGPKADIGP
Ga0310910_105563972	3300031946	Soil	LVKGCADVRFGSEADICSAQSHVRFTPNSDRKSGLPHKVMSALRPKADMCGATRDVRFGPIADMEHSVGGP
Ga0306926_109530682	3300031954	Soil	VKGCADVRFGSEADICSAQSHVRFTPNSDRKSGLPHKVMSALRPKADMCGATRDVRFGPIADMEHSVGGP
Ga0310902_103773332	3300032012	Soil	MCPSTGDVRFGSLADICAAKSDVRFTPNCDRESGLPQQVMSALHLKADMCTAQAHVCFGPKADIARPPK
Ga0307471_1040437131	3300032180	Hardwood Forest Soil	MLNVRFGSKADMCNASTHVRFTPNSDRESDFPQTVMSALPPKADMCSATRDVRFGPKADSCTAA
Ga0335083_105571303	3300032954	Soil	GSEGDICAAKPHVCFAPNSDRESGPPEKVMSALLPEADLRGAPTHFRFGP
Ga0310914_105490221	3300033289	Soil	GSEADICIAKRHVRFAPNSDRESEIPQKAMSASPPKADMCGAVGHVRFGPIADIAAYCFT
Ga0310810_110654791	3300033412	Soil	DICGAKGHARFAPNSDRKSGFPQTVMSALPPKADMCSALAHVCFGPEADINSSTAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F064051

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences