NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F065476

Metagenome / Metatranscriptome Family F065476

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F065476
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 46 residues
Representative Sequence MRLDINLATRPYEDAREFWTRWGLGVGLLGLLTLLLLGLAVRGW
Number of Associated Samples 116
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 44.09 %
% of genes near scaffold ends (potentially truncated) 99.21 %
% of genes from short scaffolds (< 2000 bps) 85.83 %
Associated GOLD sequencing projects 115
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.213 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland
(8.661 % of family members)
Environment Ontology (ENVO) Unclassified
(34.646 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.307 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 40.28%    β-sheet: 0.00%    Coil/Unstructured: 59.72%
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Variant

510152025303540MRLDINLATRPYEDAREFWTRWGLGVGLLGLLTLLLLGLAVRGWExtracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Arctic Peat Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Peatland
Tropical Peatland
Fen
Permafrost
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Fen
Palsa
Bog
Peat Soil
Arabidopsis Rhizosphere
Rhizosphere
Tropical Rainforest Soil
8.7%3.9%3.1%8.7%3.1%7.9%3.9%6.3%4.7%5.5%3.1%3.9%4.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J11758_1238848813300000789SoilMRLDINLATHAYEDSRQFWLRWGTGVAILGLVTLGLLI
JGI12635J15846_1008306413300001593Forest SoilMRLDINLATRPYEDAREFWGRWGLGVGLLALSTLLLL
JGI25616J43925_1003304013300002917Grasslands SoilMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLALLGLAVRGWTNAGRDRQNIAQLQSQ
Ga0062389_10077250323300004092Bog Forest SoilMRLDINLATRPYEDAREFWLRWGVGVGLLGLVTLVLLGLAL
Ga0008092_1047674713300004629Tropical Rainforest SoilMRLDINLATRPYEDARQFWMQWGASVGLLALVTLALVAWAVHGWINAGRDRQTI
Ga0070707_10073447823300005468Corn, Switchgrass And Miscanthus RhizosphereLDSDFINMRLDINLATRPYEDAREFWVRWGLGVGLLGLLTLVLLGLAVRGWTNA
Ga0070698_10184219613300005471Corn, Switchgrass And Miscanthus RhizosphereMRLDINLATHPYEDAREFWARWGLGVGLLGVLTLVLVTLAVHGWVKAG
Ga0070734_1044801223300005533Surface SoilMRLDINLASQPYEDAREFWMRWGTVVGALALVTLLLLTL
Ga0070697_10003355643300005536Corn, Switchgrass And Miscanthus RhizosphereMRLDINLATHPYEDAGEFWARWGLAVGLLGVLTLVLITLAVHGWVKAGRDRQSIRHLQQQ
Ga0070697_10092458623300005536Corn, Switchgrass And Miscanthus RhizosphereMRLDINLATRPYEDAREFWARWGLGVGLLGLLTLALLGLAVRGWTNAGRDRHNIGQLQ
Ga0070766_1096865423300005921SoilMRLDINLATRPYEDAREFWMRWGLAVGLLGVLTLGLLAWAVQGWINAGRDRQDIAHLQ
Ga0075017_10052712523300006059WatershedsMRLDINLATHPYEDAREFWTAWGAGIGVLALLTLLL
Ga0075030_10164538623300006162WatershedsMRLDINLATRPYEDARQFWLRWGTGLAALGILTLALLAITA
Ga0073928_1017167913300006893Iron-Sulfur Acid SpringMRLDINLATRPYEDAREFWARWGLGVGLLGVLTLVLLG
Ga0099793_1002919133300007258Vadose Zone SoilMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTLLLLGLAVRGW
Ga0099792_1104878413300009143Vadose Zone SoilMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTLVLLGLAVRGWTQAGRDR
Ga0116214_114352013300009520Peatlands SoilMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLFLLGWAVQGWTKAGRDRH
Ga0116133_115223913300009623PeatlandMRLDINLATRPYEDAREFWARWGLGVGLLGLLTVLLLALAVRGWIHAGRDRHEIAQLQ
Ga0116114_101788343300009630PeatlandMRLDINLATRPYEDAREFWARWGLGVGLLGVLTVLLLGWAVQGW
Ga0116118_102334313300009637PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTVLLLVLAVQG
Ga0116113_106944413300009638PeatlandMRLDINLATRPYEDAREFWARWGLGVGALGVLTLFLLGLTVNGWTKAGRDRQDIA
Ga0116135_141379323300009665PeatlandMRLDINLATRPYEDAREFWARWGLGVGALGVLTLFLLGLTVNGWTKAGRDRQDIARLQ
Ga0116217_1077803613300009700Peatlands SoilMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLFLLGWAVQGWTK
Ga0116130_129663623300009762PeatlandMRLDINLATRAYEDAREFWARWGLGVGLLAVLTLFLLGLTVNDWT
Ga0126374_1050496713300009792Tropical Forest SoilMRLDINLATHAYEDSRQFWLRWGTGVGALGVLTLGLVI
Ga0126380_1121401513300010043Tropical Forest SoilMRLDINLATHVYEDSRQFWLRWGTGVGVLGVLTLGLVI
Ga0126376_1057878913300010359Tropical Forest SoilMRLDLNLATRRYEDAGGFWGRRGLAGGVLALLSLA
Ga0137399_1103078313300012203Vadose Zone SoilMRLDINLATHPYEDAREFWARWGLGVGLLGVVTLILVSFAVHGWVKAGRDRQ
Ga0137360_1185280413300012361Vadose Zone SoilMRLDINLAAHPYEDAREFWARWGLGVGLLGVLTLVLIT
Ga0137373_1088320313300012532Vadose Zone SoilMRLDINLATRPYEDARKFWSRWGLGVGLLGLLTVILLGLVIRGWVNAGRDRHTIARLQEQ
Ga0137358_1006225633300012582Vadose Zone SoilMRLDINLATHPYEDAREFWARWGLGVGLLGVLTLVLITLAVHGWVKAGRDRPSI
Ga0137396_1124362323300012918Vadose Zone SoilMRLDINLATRPYEDAREFWVRWVVGVGLLGLLTVVLLGLAV
Ga0137359_1155027913300012923Vadose Zone SoilMRLDINLATHPYEDAREFWARWGLGVGLLGVLTLVLITLAVHGWVKAGRDRQ
Ga0137359_1177365013300012923Vadose Zone SoilMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTLLL
Ga0137419_1074721713300012925Vadose Zone SoilMRLNINLATRPYEDAREFWSRWGIGVGVLAVITLALLTLTVHGWVKAGRDRQS
Ga0126369_1277680713300012971Tropical Forest SoilMRLDLNLATRPYEDAGEFWTRWGATVSVLALFTLALV
Ga0181524_1025230623300014155BogMRLDINLATRPYEDAREFWVRWGLGVGLLVVLTLVLL
Ga0181538_1006091013300014162BogMRLDINLATRPYEDAREFWSRWGLGVGLLSLLTLLLLVLAERGWTHAGRDRH
Ga0181534_1026355713300014168BogMRLDINLATHPYEDAREFWARWGVGVGLLAVLTIGLIGLVINGW
Ga0181535_1046233213300014199BogMRLDINLATRPYEDAREFWARWGLGVGLLGVLTVLLLGWAVQGWTKAGRDRHDIA
Ga0182010_1061963623300014490FenMRLDINLATRPYEDAREFWARWGLGVGLLGVLTLVLLSW
Ga0182024_1001940713300014501PermafrostMRLDINLATRPYEDAREFWGRWGLGVGLLAVSTLLLIAFSVQS
Ga0182021_1017592913300014502FenMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLV
Ga0132257_10247536013300015373Arabidopsis RhizosphereMRLDINLATRPYEDARQFWIRWGSSLGVLGLATIILVFAALSG
Ga0182036_10001706113300016270SoilMRLDINLATRPYEDSREFWTRWGLVLGAVSVLTLALLAT
Ga0182040_1084075123300016387SoilMRLDINLATRPYEDSREFWTRWGLVLGAVSVLTLALLAITITGWYNA
Ga0187802_1040314613300017822Freshwater SedimentMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTVLLLVLAVRGWIHA
Ga0187818_1004544513300017823Freshwater SedimentMRVDINLATRPYEDAREFWTRWGLAVGVLVLLTLALITVAAHGW
Ga0187818_1023273913300017823Freshwater SedimentMRLDLNLATRPYEDAREFWLRWGIGVGVLGLLTLILLGLAIRG
Ga0187818_1053287423300017823Freshwater SedimentMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTVLLLVLAVRG
Ga0187848_1045292113300017935PeatlandMRLDINLATHPYEDAREFWARWGLGVGLLGLLTLLLLGLTVSDWRKAGKDRHDIAE
Ga0187850_1011938223300017941PeatlandMRLDINLATRPYEDAREFWTRWGLAVGLLGLLTALLLALAVRGW
Ga0187879_1056390823300017946PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLALLTVLLLVLAVQG
Ga0187879_1079774623300017946PeatlandMRLDINLATHPYEDAREFWARWGLGVGLLGLLTLLLLGLTVSDWRKAGKDRHDIA
Ga0187777_1081937913300017974Tropical PeatlandMRLDINLATHPYEDAREFWARWGAGVGLLALVTLLLVGWTVRSWMDAGR
Ga0187885_1053481923300018025PeatlandMRLDINLATRPYEDARQFWLRWGLGIGALAALTVFLLLWTVSEWKH
Ga0187862_1018692313300018040PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTVLLLVLAV
Ga0187871_1060635413300018042PeatlandMRLDINLATRPYEDAREFWVRWGSAVGLLGVLTLVLLGWAVEGWTKAGR
Ga0187851_1017655223300018046PeatlandMRLDLNLATHPYEDAREFWARWGSGIGVLALLTLVLIGWTVRSWSN
Ga0187851_1053517723300018046PeatlandMRLDINLATRPYEDAREFWGRWGLGVGLLALFTLALLGWAASGWQNAGRDRQ
Ga0187859_1006487833300018047PeatlandMRLDLNLATHPYEDAREFWARWGSGIGVLALLTLVLI
Ga0187772_1068471313300018085Tropical PeatlandMRLNINLATHPYEDAREFWARWGTAVALLAVVSVALLGWTVRSWVAAGRDRHNI
Ga0187772_1106806713300018085Tropical PeatlandMRLDINLATHPYEDAREFWTRWGLAVGLLAVCTLALLAWTVHSWVDAGRDRRNIAQLQQL
Ga0187769_1096336713300018086Tropical PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTALLLVLAVRGWIH
Ga0187769_1130222013300018086Tropical PeatlandMRLNINLATRPYEDAREFWSRWGVAVGLLAVVTVFLLGWTARNWMAAGHDRHDI
Ga0187770_1148884123300018090Tropical PeatlandMRLDINLATRPYEDAGIFWARWGAGVGLLALATLLLVGWTVRSWTN
Ga0066669_1033517113300018482Grasslands SoilMRVDINLATRPYEDAKEFWARWGLGVGLLGLLTLVLIGLAVHGWVKAGRD
Ga0187852_141837213300019082PeatlandMRLDINLATRPYEDAREFWARWGLGVGLLAVLTLFLLG
Ga0184586_10335413300019194SoilMRLDINLATRPYEDAREFWTRWGLGVGLLALLTVLLLGWTVKA
Ga0193713_103937713300019882SoilMRLDINLATRRYEDAREFWSRWGIGVGVLGVLTLALLILTVHGWVKAGRD
Ga0210403_1123856123300020580SoilMRLDINLATRPYEDAREFWGRWGVGVGLLAACTLLLLGFAVQSWLFAGR
Ga0210406_1021347513300021168SoilMRLDINLATRPYEDAREFWARWGLGVGLLGLLTLVLLGLAVRGWTQAG
Ga0210406_1050662313300021168SoilMRLNINLATRPYEDAREFWSRWGLGVGALGVVTLILIGLAVQI
Ga0210409_1140442413300021559SoilMRLDINLATRPYEDAREFWARWGLGVGLLGLLTVVLL
Ga0126371_1323886213300021560Tropical Forest SoilMRLDINLATRPYEDQRKFWLRWGIPLFLLGLVTLVLLYSMV
Ga0213851_112350923300021860WatershedsMRLDINLATRPYEDAREFWSRWGLGVGLLGLLTLVLVGFA
Ga0213853_1088522123300021861WatershedsMRLDINLATHPYEDAREFWTRWGAGIGVLALLTLLLIGWTVRSWSAAGRDRHNIASLQ
Ga0224549_105104013300022840SoilMRLDINLATTPYEDAREFWVRWGTGVGALAVLTLVLLALAVEGWTKAGR
Ga0208935_105569713300025414PeatlandMRLDINLATRPYEDAREFWGRWGLGVGLLALFTLALLGWAASGWQNAGRDRQN
Ga0208034_101821853300025442PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGVLTLVL
Ga0208037_100936113300025448PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGVLTLLLLGLAVRGWTNAGRDR
Ga0208850_106619323300025457Arctic Peat SoilMRLDINLATRPYEDAREFWARWGLGVGLLGVLTLALLAVAARGWTH
Ga0208688_105517923300025480PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGVLTLLLLGLAV
Ga0208686_101812713300025500PeatlandMRLDINLATRPYEDAREFWTRWGLGVGLLGLLTVLLLVLAVQGWIHAGRDRHEIAQ
Ga0209236_125889123300026298Grasslands SoilMRLDINLATHPYEDAREFWARWGLGVGLLGVLTLVLITLAVHGWVKA
Ga0257170_104940913300026351SoilMRLDINLATRPYEDAREFWARWGLGVGLLGVVTLVLLTLAVHGWVKAGRDRQT
Ga0257159_109142813300026494SoilMRLDINLATRPYEDAREFWARWGLGVGLLGLLTLVLLG
Ga0209056_1073173413300026538SoilMRLNINLATRPYEDAREFWSRWGLGVGALGLVTLVLLTLAVHGWVKAGRDRQTILGLERQ
Ga0209733_109450513300027591Forest SoilMRLDINLATRPYEDAREFWGRWGLGVGLLALSTLLLLGFAVRSWILA
Ga0209733_117406913300027591Forest SoilMRLDINLATRPYEDAREFWARWGLGVGLLGLLTLVLLGLAVRGWTNAGRDRHNIAQ
Ga0208044_102905633300027625Peatlands SoilMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLFLLGWAVQGWTKAGRDRHDI
Ga0209422_100993833300027629Forest SoilMRLDINLATRPYEDAREFWGRWGLGVGLLALSTLLLLGFAV
Ga0209625_111498723300027635Forest SoilMRLDINLATRPYEDAREFWGRWGLGVGVLAVATLVL
Ga0208990_101890133300027663Forest SoilMRLDINLATRRYEDAREFWTRWGLGVGLLGLLTLVLLGLAV
Ga0209009_115367123300027667Forest SoilMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLALLGLAV
Ga0209655_1019969813300027767Bog Forest SoilMRLDINLATRPYEDAREFWARWGLGVGLLGVLTLFLLGWTIHSWQNAGRDRQNIAQL
Ga0209772_1004103713300027768Bog Forest SoilMRLDINLATRPYEDAREFWGRWGLGVGLLALFTLALLGWAASG
Ga0209656_1038030723300027812Bog Forest SoilMRLDINLATRPYEDAREFWARWGLGVGLLALLTVVLMALAVRGWIHAGRDRQTITRL
Ga0209773_1020479713300027829Bog Forest SoilMRLDINLATRPYEDAREFWLRWGLVVGVLGALTLALLVFAVRGWTEAGRDR
Ga0209067_1061957223300027898WatershedsMRLDINLATRPYEDAREFWSRWGVGVGVLGLLTLILLG
Ga0302234_1031321813300028773PalsaMRLDINLATRPYEDAREFWARWGLGVGLLAILTLFLIGLAVN
Ga0302266_1010302523300028779BogMRLDINLATHPYEDAREFWARWGLGVGLLALLTIGL
Ga0265338_1069927013300028800RhizosphereMRLDINLATRPYEDAREFWLRWGSGVGLLAVLTLVLLGLT
Ga0302200_1001516213300028909BogMRLDINLATHPYEDAREFWARWGLGVGLLALLTIGLLA
Ga0311326_1002338743300029917BogMRLDINLATRPYEDAREFWSRWGLGVGLLAVLTLVLLG
Ga0311343_1083967623300029953BogMRLDINLATRPYEDAREFWARWGLGVGALAVLTLFLLG
Ga0311336_1050405123300029990FenMRLDINLATRPYEDAAEFWARWGLGVGVLALATLLLLGW
Ga0302210_1004049233300029995FenMRLDINLATRPYEDAAEFWARWGLGVGVLALATLLLL
Ga0311344_1065341413300030020BogMRLDINLATRPYEDAREFWARWGLGVGALAVLTLFLL
Ga0302274_1041689523300030041BogMRLDINLATRPYEDAREFWARWGLGVGALAVLTLFLLGLTV
Ga0302179_1032108423300030058PalsaMRLDINLATRPYEDAREFWVRWGLGVALLALLTLGLLGLAVKGWTKA
Ga0311370_1136568623300030503PalsaMRLDINLATRPYEDARKFWGRWGLGVGLVGILTLLLLSFTVNEWRNAGKDR
Ga0311354_1195201513300030618PalsaMRLDINLATRPYEDAREFWVRWGSGVGLLAVLTLLLLG
Ga0311366_1122596923300030943FenMRLDINLATRPYEDAREFWARWGLGVGLLGVLTLVLLGLAVRGWIKAGRDRHNI
Ga0170824_10427751613300031231Forest SoilMRLDINLATRPYEDAREFWGRWGLGVGLLAVLTIGLLGMTVRGWINA
Ga0302326_1349737723300031525PalsaMRLNINLATSPYEDAREFWVRWGSAVAVLALITVALLGWTTRS
Ga0310686_10836065913300031708SoilMRLDINLATRPYEDAREFWARWGLGVGLLGMLTLFLLVMAVR
Ga0265314_1012210013300031711RhizosphereMRLDINLATRPYEDAREFWSRWGVGVGALGVLTLVLLGWAITGWTNAGRD
Ga0307468_10013110613300031740Hardwood Forest SoilMRLDINLATRPYEDAREFWARWGLGVGLLGVVTLLLLGLAVRGWTHAG
Ga0318529_1043245223300031792SoilMRLDINLATRPYEDSREFWTRWGLVLGAVSVLTLALLAITITGWY
Ga0318559_1010676013300032039SoilMRLDINLATRPYEDSREFWTRWGLVLGAVSVLTLALLAITITGWYN
Ga0335077_1090741423300033158SoilMRLNINLATHPYEDAREFWVKWGSAVGVLALLTLALLGWTVRGWINAG
Ga0326727_1035671823300033405Peat SoilMRLDINLATRPYEDAREFWVRWGLGVGLLGVLTLVLLSWTVRGWT
Ga0326727_1057319213300033405Peat SoilMRLDINLATIPYEDAREFWLRWGLGVGLLGVVTLVLLGWAVRGWTNAGRDRH
Ga0326726_1062769613300033433Peat SoilMRLDLNLATRPYEDAREFWLRWGIGVGLLGLLTLILLGLSIRGWVNAGRD
Ga0314862_0005492_2_1243300033803PeatlandMRLDINLATRPYEDAGEFWMRWGTAVGLLLVLTLTLLGWTT
Ga0334790_210193_3_1733300033887SoilMRLDINLATHPYEDAREFWARWGLGVGLLAALTLFLLGLAVNDWRNAGRDRREIARL


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