Metagenome / Metatranscriptome Family F065485

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065485
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	44 residues
Representative Sequence	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSPRRSPRRAQA
Number of Associated Samples	99
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.16 %
% of genes near scaffold ends (potentially truncated)	21.26 %
% of genes from short scaffolds (< 2000 bps)	82.68 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.189 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (15.748 % of family members)
Environment Ontology (ENVO)	Unclassified (25.984 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (26.772 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 0.00% Coil/Unstructured: 75.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00582	Usp	37.01
PF00571	CBS	33.86
PF00034	Cytochrom_C	4.72
PF13380	CoA_binding_2	3.15
PF11794	HpaB_N	2.36
PF13607	Succ_CoA_lig	1.57
PF09335	SNARE_assoc	1.57
PF00115	COX1	1.57
PF00072	Response_reg	0.79
PF13549	ATP-grasp_5	0.79
PF01258	zf-dskA_traR	0.79
PF00006	ATP-synt_ab	0.79
PF04909	Amidohydro_2	0.79
PF00583	Acetyltransf_1	0.79
PF12973	Cupin_7	0.79
PF00702	Hydrolase	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.57
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.57
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.57
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.19 %
Unclassified	root	N/A	11.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.19 %
Unclassified	root	N/A	11.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.19 %
Unclassified	root	N/A	11.81 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	41.73 %
Unclassified	root	N/A	11.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.15 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.57 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	41.73 %
Unclassified	root	N/A	11.81 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	41.73 %
Unclassified	root	N/A	11.81 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.81 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	7.87 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.87 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0813821	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	638	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100674634	All Organisms → cellular organisms → Bacteria	1889	Open in IMG/M
3300000956\|JGI10216J12902_110930752	Not Available	619	Open in IMG/M
3300002121\|C687J26615_10154014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	581	Open in IMG/M
3300003994\|Ga0055435_10192499	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	584	Open in IMG/M
3300004020\|Ga0055440_10005514	All Organisms → cellular organisms → Bacteria	2100	Open in IMG/M
3300004022\|Ga0055432_10064454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	902	Open in IMG/M
3300004062\|Ga0055500_10088658	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300004633\|Ga0066395_10055973	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1765	Open in IMG/M
3300004633\|Ga0066395_10692123	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	604	Open in IMG/M
3300005172\|Ga0066683_10806069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	546	Open in IMG/M
3300005183\|Ga0068993_10286942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	592	Open in IMG/M
3300005186\|Ga0066676_10659328	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	711	Open in IMG/M
3300005332\|Ga0066388_100788613	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300005332\|Ga0066388_108688878	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005445\|Ga0070708_100085868	All Organisms → cellular organisms → Bacteria	2857	Open in IMG/M
3300005713\|Ga0066905_100398020	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300005764\|Ga0066903_102120952	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005829\|Ga0074479_10003841	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	620	Open in IMG/M
3300005833\|Ga0074472_10989179	All Organisms → cellular organisms → Bacteria	4196	Open in IMG/M
3300006871\|Ga0075434_101386558	Not Available	713	Open in IMG/M
3300007255\|Ga0099791_10339832	Not Available	718	Open in IMG/M
3300007258\|Ga0099793_10112306	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300009038\|Ga0099829_10417215	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1110	Open in IMG/M
3300009090\|Ga0099827_11612767	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	565	Open in IMG/M
3300009162\|Ga0075423_11953782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300009792\|Ga0126374_11016019	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	652	Open in IMG/M
3300009792\|Ga0126374_11871717	Not Available	504	Open in IMG/M
3300010043\|Ga0126380_10344019	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300010047\|Ga0126382_10529463	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300010047\|Ga0126382_11460982	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300010048\|Ga0126373_11202198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	824	Open in IMG/M
3300010358\|Ga0126370_11574073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	628	Open in IMG/M
3300010359\|Ga0126376_11164291	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300010359\|Ga0126376_11837429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	644	Open in IMG/M
3300010376\|Ga0126381_101310662	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1047	Open in IMG/M
3300010391\|Ga0136847_10041361	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	554	Open in IMG/M
3300010391\|Ga0136847_11806586	Not Available	788	Open in IMG/M
3300010391\|Ga0136847_12072716	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	727	Open in IMG/M
3300010391\|Ga0136847_12390682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	532	Open in IMG/M
3300010391\|Ga0136847_13197235	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1546	Open in IMG/M
3300010398\|Ga0126383_10310850	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300010398\|Ga0126383_10917066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	963	Open in IMG/M
3300010398\|Ga0126383_11886234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300011270\|Ga0137391_10092571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2614	Open in IMG/M
3300011414\|Ga0137442_1063070	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300011419\|Ga0137446_1066025	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300012096\|Ga0137389_10053039	All Organisms → cellular organisms → Bacteria	3072	Open in IMG/M
3300012096\|Ga0137389_11509161	Not Available	568	Open in IMG/M
3300012164\|Ga0137352_1078293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	659	Open in IMG/M
3300012204\|Ga0137374_10015007	All Organisms → cellular organisms → Bacteria	8951	Open in IMG/M
3300012204\|Ga0137374_10022737	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7060	Open in IMG/M
3300012206\|Ga0137380_11013097	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	710	Open in IMG/M
3300012209\|Ga0137379_10157891	All Organisms → cellular organisms → Bacteria → Proteobacteria	2179	Open in IMG/M
3300012351\|Ga0137386_10872573	Not Available	646	Open in IMG/M
3300012917\|Ga0137395_10022333	All Organisms → cellular organisms → Bacteria	3705	Open in IMG/M
3300012931\|Ga0153915_10655555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1210	Open in IMG/M
3300012931\|Ga0153915_10904158	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1026	Open in IMG/M
3300012931\|Ga0153915_11375067	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300012931\|Ga0153915_11835768	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	709	Open in IMG/M
3300012964\|Ga0153916_10017007	All Organisms → cellular organisms → Bacteria	6042	Open in IMG/M
3300012971\|Ga0126369_10254213	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300012971\|Ga0126369_10916818	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300014873\|Ga0180066_1002659	All Organisms → cellular organisms → Bacteria	2547	Open in IMG/M
3300014883\|Ga0180086_1012763	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1801	Open in IMG/M
3300014884\|Ga0180104_1000882	All Organisms → cellular organisms → Bacteria	5972	Open in IMG/M
3300014884\|Ga0180104_1019883	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1654	Open in IMG/M
3300014885\|Ga0180063_1201492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	640	Open in IMG/M
3300015254\|Ga0180089_1059232	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300016357\|Ga0182032_11553879	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	575	Open in IMG/M
3300018052\|Ga0184638_1244011	Not Available	620	Open in IMG/M
3300018058\|Ga0187766_10115566	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300018059\|Ga0184615_10222700	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300018059\|Ga0184615_10244018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1007	Open in IMG/M
3300018063\|Ga0184637_10402027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	815	Open in IMG/M
3300018077\|Ga0184633_10013171	All Organisms → cellular organisms → Bacteria	3983	Open in IMG/M
3300018084\|Ga0184629_10152179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1173	Open in IMG/M
3300018084\|Ga0184629_10609913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	556	Open in IMG/M
3300020068\|Ga0184649_1310470	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300021081\|Ga0210379_10023027	All Organisms → cellular organisms → Bacteria	2372	Open in IMG/M
3300021081\|Ga0210379_10254217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	763	Open in IMG/M
3300021090\|Ga0210377_10115622	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300021560\|Ga0126371_10232983	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300021560\|Ga0126371_10290954	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300021560\|Ga0126371_11096624	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300021560\|Ga0126371_11567226	Not Available	786	Open in IMG/M
3300021560\|Ga0126371_12084045	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	683	Open in IMG/M
3300025001\|Ga0209618_1015329	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300025159\|Ga0209619_10055675	All Organisms → cellular organisms → Bacteria	2463	Open in IMG/M
3300025164\|Ga0209521_10156958	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300025311\|Ga0209343_10166296	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300025319\|Ga0209520_10166379	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300025535\|Ga0207423_1032916	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	886	Open in IMG/M
3300025560\|Ga0210108_1020376	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300025560\|Ga0210108_1068000	Not Available	693	Open in IMG/M
3300025910\|Ga0207684_10165874	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300025922\|Ga0207646_10471451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1132	Open in IMG/M
3300025965\|Ga0210090_1048647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	579	Open in IMG/M
3300027815\|Ga0209726_10005280	All Organisms → cellular organisms → Bacteria	15777	Open in IMG/M
3300027874\|Ga0209465_10454949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	640	Open in IMG/M
3300027882\|Ga0209590_10653897	Not Available	674	Open in IMG/M
3300027882\|Ga0209590_10801903	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	598	Open in IMG/M
3300028536\|Ga0137415_10173961	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300031231\|Ga0170824_102435951	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
3300031546\|Ga0318538_10010547	All Organisms → cellular organisms → Bacteria	3823	Open in IMG/M
3300031763\|Ga0318537_10226844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	694	Open in IMG/M
3300031780\|Ga0318508_1169045	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300031794\|Ga0318503_10315482	Not Available	508	Open in IMG/M
3300031795\|Ga0318557_10103046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1264	Open in IMG/M
3300031796\|Ga0318576_10579463	Not Available	528	Open in IMG/M
3300031873\|Ga0315297_10716331	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300031965\|Ga0326597_10000462	All Organisms → cellular organisms → Bacteria	72026	Open in IMG/M
3300031965\|Ga0326597_11097839	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031997\|Ga0315278_10179806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2171	Open in IMG/M
3300032066\|Ga0318514_10056472	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300032094\|Ga0318540_10101263	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355	Open in IMG/M
3300032143\|Ga0315292_11053516	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	674	Open in IMG/M
3300032164\|Ga0315283_12228048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	538	Open in IMG/M
3300032205\|Ga0307472_102229467	Not Available	553	Open in IMG/M
3300032256\|Ga0315271_11660069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	549	Open in IMG/M
3300032770\|Ga0335085_10334295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1781	Open in IMG/M
3300033233\|Ga0334722_10608511	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	780	Open in IMG/M
3300033289\|Ga0310914_10063600	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M
3300033806\|Ga0314865_186401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	556	Open in IMG/M
3300033814\|Ga0364930_0004871	All Organisms → cellular organisms → Bacteria	4520	Open in IMG/M
3300034164\|Ga0364940_0191866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	597	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.43%
Host-Associated	Host-Associated	1.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.84%
Aquatic	Environmental → Aquatic	38.58%
Plants	Host-Associated → Plants	1.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.27%
Freshwater	Environmental → Aquatic → Freshwater	17.32%
Sediment	Environmental → Aquatic → Sediment	14.17%
Marine	Environmental → Aquatic → Marine	7.09%
Floodplain	Environmental → Terrestrial → Floodplain	1.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.17%
Lake	Environmental → Aquatic → Freshwater → Lake	8.66%
Loam	Environmental → Terrestrial → Soil → Loam	8.66%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.09%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.36%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.45%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.66%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.51%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.36%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.79%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.79%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.60%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.09%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.09%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	3.94%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.36%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.57%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.79%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025001	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 3 (SPAdes)	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025965	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_08138212	2228664022	Soil	VGIRKSYGKNKKNKRPIGAITVKRDETLRRAGKSKKAPPRGRS
INPhiseqgaiiFebDRAFT_1006746342	3300000364	Soil	VGIRKSYGKNKKXKRPIGAITVKRDETLRRAGKSKKAPPRGRS*
JGI10216J12902_1109307521	3300000956	Soil	VGIRKSYGKNKKNKRPIGAITVKRDETLRRAGKSKKAPPRGRS*
C687J26615_101540141	3300002121	Soil	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSTRRSPRRAKA*
Ga0055435_101924991	3300003994	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPISAIAVKRDETVRRARKSPRRTVRRAGA*
Ga0055440_100055145	3300004020	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIGAIAVKRDETVRRAAKSPRRAPRRARA*
Ga0055432_100644542	3300004022	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIAAIAVKRDETVRRAAKSSRRSPRRGHA*
Ga0055500_100886582	3300004062	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIAAIAVKRDETVRRAAKSPRRTKRRAKA*
Ga0066395_100559733	3300004633	Tropical Forest Soil	MKEASVGIRKSRGKNKKNKRVAGAIAVKREETLRRADKGAQRGRRSPHA*
Ga0066395_106921232	3300004633	Tropical Forest Soil	LVAGLKAAHDSPMKEASVGIRKSRGKNKKNKRVIGAIAVKREEALRRADKGERRGRRTPHA*
Ga0066683_108060691	3300005172	Soil	MGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPRRRPSS*
Ga0068993_102869422	3300005183	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIGAIRVKRDETVRRAAKSPRRSPRRAQS*
Ga0066676_106593282	3300005186	Soil	MGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPSRRPSS*
Ga0066388_1007886133	3300005332	Tropical Forest Soil	VKEDSVGIRRSRVKNKKNKRVVGAIAVKREETLRRAGKGNRRGRRSPHA*
Ga0066388_1086888781	3300005332	Tropical Forest Soil	MSGRAQAAHDSPVKEATVGIRKSRGKNKKNKRVVDAIAVKREETLRRAGKGSLRGRRSPRA*
Ga0070708_1000858683	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPRRKPSS*
Ga0066905_1003980202	3300005713	Tropical Forest Soil	MGIRKSYGKNKKSKRPASAAAVEREETLRRAAKPRRRRRA*
Ga0066903_1021209522	3300005764	Tropical Forest Soil	MGIRKSYGKNKKNKRPKEAIAVKRDETVRRARRSRATGPRARKG*
Ga0074479_100038412	3300005829	Sediment (Intertidal)	MGIRKSYGKNKKNDRPIGAIGVKREETVRRATKSRRRTPRRAGA*
Ga0074472_109891795	3300005833	Sediment (Intertidal)	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRRAQA*
Ga0075434_1013865582	3300006871	Populus Rhizosphere	MGIRKSSGKNKKSKRPVTAIAVKRDETLRKAAANARRGAAKKSR*
Ga0099791_103398322	3300007255	Vadose Zone Soil	MGIRKSIGKFKKDKRPIVAIAVKREETLRRVRRASRKPSS*
Ga0099793_101123062	3300007258	Vadose Zone Soil	MGIRKSIGKFKKDKRPIVAIAVKREETLRRVRRDSRKPSS*
Ga0099829_104172151	3300009038	Vadose Zone Soil	MGIRKSYGKNKKNKRPISAVAVKREEILRRARRRPRKP*
Ga0099827_116127671	3300009090	Vadose Zone Soil	MGIRKSYGKNKKNKRPLEAIAVKRDETLPRAKRSRQAPPRRRRG*
Ga0075423_119537821	3300009162	Populus Rhizosphere	KSTGKNKKSKRPVTAIAVKRDETLRKAAANARRGAAKKSR*
Ga0126374_110160191	3300009792	Tropical Forest Soil	SYGKNKKNKRPKEAIAVKRDETLRRAKRSGATSPRARKG*
Ga0126374_118717172	3300009792	Tropical Forest Soil	KSRGKNKKNKRVVGAIAVKREETLRRADKGERRGRRSPHA*
Ga0126380_103440191	3300010043	Tropical Forest Soil	VKEDSVGIRRSRVKNKKNKRVVGAIAVKREETLRRAGKGNRRGRRSP
Ga0126382_105294632	3300010047	Tropical Forest Soil	MGIRKSYGKNKKNKRPLEAIAVKRDETLRRAKRSRQVSPRRRQG*
Ga0126382_114609822	3300010047	Tropical Forest Soil	VKEDSVGIRRSRVKNKKSKRVVGAIAVKREETLRRAGKGNRRGRRSPHA*
Ga0126373_112021981	3300010048	Tropical Forest Soil	MKEASVGIRKSRGKNKKNKRVAGAIAVKREETLRRADKGAQRGRRSPHA
Ga0126370_115740732	3300010358	Tropical Forest Soil	LAAHDSPKKEASVGIRKSRGKNKKNKRVVGAIAVKREETLRRADKGERRGRRSPHG*
Ga0126376_111642912	3300010359	Tropical Forest Soil	VKEDSVGIRRSRVKNKKNKRAVGAIAVKREETLRRAGKGNRRGRRSPHA*
Ga0126376_118374292	3300010359	Tropical Forest Soil	RCVDRETAMGIRKSYGKNKKNKRPLEAIAVKRDEMLRRAKRSRQVSPRRRQG*
Ga0126381_1013106622	3300010376	Tropical Forest Soil	VKEASVGIRKSRGKNKKNKRVVGAIAVKREETLRRADKGERRGRRSPHA*
Ga0136847_100413612	3300010391	Freshwater Sediment	MGIRKSYGKNKKNKRPISAIAVKRDETVRRARRRARKP*
Ga0136847_118065861	3300010391	Freshwater Sediment	DMGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSTRRSPRPAGA*
Ga0136847_120727162	3300010391	Freshwater Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRAPRRAQA*
Ga0136847_123906822	3300010391	Freshwater Sediment	MGIRKSYGKNKKNDRPIGAIAVKRDETVRRAARSPRRPARRAKA*
Ga0136847_131972351	3300010391	Freshwater Sediment	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSPRRSPRRAQA*
Ga0126383_103108503	3300010398	Tropical Forest Soil	MGIRKSYGKNKKNKRPQGAIAVKRDETLRRARRARPASPRARRA*
Ga0126383_109170661	3300010398	Tropical Forest Soil	MKEASVGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA*
Ga0126383_118862342	3300010398	Tropical Forest Soil	VGIRKSRGKNKKNKRVVGAIAVKREETLRRADKGERRGRRSPRA*
Ga0137391_100925712	3300011270	Vadose Zone Soil	MGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPSRKPSS*
Ga0137442_10630701	3300011414	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSPRRSPRRAEA*
Ga0137446_10660251	3300011419	Soil	MGIRKSYGKNKKNDRPIAAIRVKREETVRRAAKSPRRSPRRAQA*
Ga0137389_100530393	3300012096	Vadose Zone Soil	MGIRKSTGKFKKDKRPIVAIAVKREETLRRARRASRKPSS*
Ga0137389_115091611	3300012096	Vadose Zone Soil	VGIRKSYGKNKNNNRPIGAITVKRDETLRRAGKSKEAPPRRRRP*
Ga0137352_10782932	3300012164	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRREAKSERRSPRRAQA*
Ga0137374_1001500715	3300012204	Vadose Zone Soil	MGIRKSRGKNKKNKRPIAAIAVKREETLRRAAKSPRRSTGRAGA*
Ga0137374_100227376	3300012204	Vadose Zone Soil	MGVRKSSGKNKTDKRPAEAIAVKREETLRRAGKSKRQPARRRP*
Ga0137380_110130972	3300012206	Vadose Zone Soil	MRDREAAMGIRKSYGKNKKNKRPLEAVAVKRDETLRRAKRFRQAPPRRRQG*
Ga0137379_101578912	3300012209	Vadose Zone Soil	MGIRKSYGKNKKNKRPLEAVAVKRDETLRRAKRFRQAPPRRRQG*
Ga0137386_108725731	3300012351	Vadose Zone Soil	MRDREAAMGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPRRKPSS*
Ga0137395_100223331	3300012917	Vadose Zone Soil	MGIRKSTGKFKKDKRPIVAIAMKREETLRRVRRASRKPSS*
Ga0153915_106555552	3300012931	Freshwater Wetlands	MGIRKSYGKNKKNDRPIAAIAVKRDETVRRAAKSRRRSPRRAQA*
Ga0153915_109041583	3300012931	Freshwater Wetlands	MGIRKSYGKNKKNDRPIAAIGVKRDETVRRAAKSRRRSPRRAGA*
Ga0153915_113750671	3300012931	Freshwater Wetlands	MGIRKSYGKNKKNDRPISAIRVKRDETVRRAAKSPRRSPRRAGA*
Ga0153915_118357681	3300012931	Freshwater Wetlands	MGIRKSYGMNKKNDRPISAIAVKRDETVRRAAKSPRRSPKRGQA*
Ga0153916_100170076	3300012964	Freshwater Wetlands	MGIRKSYGKNKKNDRPIAAIGVKRDETVRRAAKSSRRSPRRSPRRAQA*
Ga0126369_102542132	3300012971	Tropical Forest Soil	MKEASVGIRKSRGKNKKNKRVIGAIAVKREEALRRADKGERRGRRTPHA*
Ga0126369_109168182	3300012971	Tropical Forest Soil	VGIRKSRGKNKKNKRVVGAIAVKREETLRRADKGERRGRRSPHA*
Ga0180066_10026592	3300014873	Soil	MGIRKSYGKNKKNKRPISAIAVKREETVRRATKSPRRSPRRAQA*
Ga0180086_10127631	3300014883	Soil	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAGKSPRRSPRRAEA*
Ga0180104_100088210	3300014884	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSPRRAPRRAKA*
Ga0180104_10198834	3300014884	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSARRSPRRAQA*
Ga0180063_12014921	3300014885	Soil	MGIRKSYGKNKKNKRPISAIGVKRDETVRRAAKSARRSPRRAQA*
Ga0180089_10592323	3300015254	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSARRSPRRA
Ga0182032_115538791	3300016357	Soil	RGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0184638_12440112	3300018052	Groundwater Sediment	MGIRKSYGKNKKDKRTVGAIAAKRDETVRRAGRSKRTPSPRRPS
Ga0187766_101155662	3300018058	Tropical Peatland	MGIRRSTVKNKKDKRSIAAIAVKRGETVRRAARSTRRAPERGRA
Ga0184615_102227003	3300018059	Groundwater Sediment	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSPRRSPRRAEA
Ga0184615_102440183	3300018059	Groundwater Sediment	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSTRRSPRRAKA
Ga0184637_104020272	3300018063	Groundwater Sediment	MGIRKSYGKNKKNKRPSSAIAVKREETVRRAMKSPRRVPRHAQA
Ga0184633_100131712	3300018077	Groundwater Sediment	MGIRKSHGKNKKNKRPISAIAVKRDETVRRAAKSTRRSARRAEA
Ga0184629_101521791	3300018084	Groundwater Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRRAQA
Ga0184629_106099132	3300018084	Groundwater Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRAPRRARA
Ga0184649_13104701	3300020068	Groundwater Sediment	MGIRKSYGKNKKNDRPISAIRVKRDETVRRAAKSPRRSPRRAQA
Ga0210379_100230276	3300021081	Groundwater Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRAPRRAQA
Ga0210379_102542172	3300021081	Groundwater Sediment	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSPRRAPRRAKA
Ga0210377_101156222	3300021090	Groundwater Sediment	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAGKSPRRSPRRAEA
Ga0126371_102329835	3300021560	Tropical Forest Soil	MSPTKEASVGIRKSRGKNKKNKRVIGAIAVKREEALRRADKGER
Ga0126371_102909541	3300021560	Tropical Forest Soil	VGIRKSRGKNKKNKRVIGAIAVKREEALRRADKGER
Ga0126371_110966242	3300021560	Tropical Forest Soil	VGIRKSRGKNKKNKRVVGAIAVKREETLRRADKGERRGRRSPHA
Ga0126371_115672262	3300021560	Tropical Forest Soil	MKEASMGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0126371_120840452	3300021560	Tropical Forest Soil	MGIRKSYGKNKKNKRPKEAIAVKRDETLRRAKRSR
Ga0209618_10153291	3300025001	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSTRRAPRRAQA
Ga0209619_100556751	3300025159	Soil	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSTRRAPRRAQA
Ga0209521_101569584	3300025164	Soil	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKSTRRSPRRAKA
Ga0209108_104112473	3300025165	Soil	MGIRKSYGKNKKNKRPISAIAVKRDEAVRRAAKSP
Ga0209343_101662961	3300025311	Groundwater	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSTRRSPRRPKA
Ga0209520_101663794	3300025319	Soil	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSTRR
Ga0207423_10329162	3300025535	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIAAIAVKRDETVRRAAKSSRRSPRRGHA
Ga0210108_10203761	3300025560	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPISAIAVKRDETVRRARKSPRRTVRRAGA
Ga0210108_10680002	3300025560	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIGAIRVKRDETVRRAAKSPRRSPRRAQS
Ga0207684_101658743	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPRRKPSS
Ga0207646_104714511	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RKSYGKNKKNKRPIGAIAVKREETLRRARRPRRKPSS
Ga0210090_10486472	3300025965	Natural And Restored Wetlands	MGIRKSYGKNKKNDRPIAAIAVKRDETVRRAAKSPRRTKRRAKA
Ga0209726_1000528018	3300027815	Groundwater	MGIRKSYGKNKKNKRPIAAIAVKRDETVRRAAKSTRRSPRRAEA
Ga0209465_104549492	3300027874	Tropical Forest Soil	MKEASVGIRKSRGKNKKNKRVIGAIAVKREEALRRADKGERRGRRTPHA
Ga0209590_106538972	3300027882	Vadose Zone Soil	MGIRKSYGKNKKNKRPIGAIAVKREETLRRARRPSRKPSS
Ga0209590_108019032	3300027882	Vadose Zone Soil	MGIRKSYGKNKKNKRPLEAIAVKRDETLPRAKRSRQAPPRRRRG
Ga0137415_101739612	3300028536	Vadose Zone Soil	MGIRKSIGKFKKDKRPIVAIAVKREETLRRVRRASRKPSS
Ga0170824_1024359511	3300031231	Forest Soil	MGIRKSYGKNKKSKKPIGAITVKREETLRRAGKSSASASRRGRP
Ga0318538_100105473	3300031546	Soil	MGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0318537_102268442	3300031763	Soil	ASMGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0318508_11690452	3300031780	Soil	MGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGR
Ga0318503_103154822	3300031794	Soil	SPVKETRMGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0318557_101030463	3300031795	Soil	SMGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0318576_105794632	3300031796	Soil	VYDSPMKEASMGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0315297_107163311	3300031873	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSTRRAPRRAKA
Ga0326597_1000046236	3300031965	Soil	MGIRKSYGKNKKNKRPIAAIAVKRDETLRRAAKSPRRSPRRAEA
Ga0326597_110978391	3300031965	Soil	MGIRKSYGKNKKNKRPISAIAVKRDETVRRAAKTPRRSPRRTGA
Ga0315278_101798063	3300031997	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRRAKA
Ga0318514_100564721	3300032066	Soil	MGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRR
Ga0318540_101012631	3300032094	Soil	PMKEASMGIRKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0315292_110535163	3300032143	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRRAK
Ga0315283_122280482	3300032164	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRR
Ga0307472_1022294672	3300032205	Hardwood Forest Soil	MGIRKSYGKNKKNKRPLEAIAVKRDETLRRAKRSREAPPRRRQG
Ga0315271_116600692	3300032256	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRRAQV
Ga0335085_103342952	3300032770	Soil	MGIRKSYGKNKKDDRSIAAIAVKRDETIRRAAKSPRRAPKRAKA
Ga0334722_106085112	3300033233	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRSPRRAQG
Ga0310914_100636003	3300033289	Soil	RKSRGKNKKNKRVIGAIAVKRDETLRRADKGERRGRRSPHA
Ga0314865_186401_32_166	3300033806	Peatland	MGIRRSTVKNKKDKRSIAAIAVKRGETVRRAARSTRRPPERGRA
Ga0364930_0004871_3605_3739	3300033814	Sediment	MGIRKSYGKNKKNDRPISAIAVKRDETVRRAAKSPRRSPRRAQA
Ga0364940_0191866_141_275	3300034164	Sediment	MGIRKSYGKNKKNDRPIAAIRVKRDETVRRAAKSPRRAPRGAQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065485

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences