Metagenome Family F065496

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065496
Family Type	Metagenome
Number of Sequences	127
Average Sequence Length	43 residues
Representative Sequence	KRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAK
Number of Associated Samples	64
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.80 %
% of genes near scaffold ends (potentially truncated)	96.06 %
% of genes from short scaffolds (< 2000 bps)	94.49 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.764 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (43.307 % of family members)
Environment Ontology (ENVO)	Unclassified (60.630 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.016 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.24% β-sheet: 0.00% Coil/Unstructured: 61.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF08592	Anthrone_oxy	5.51
PF08450	SGL	3.15
PF00561	Abhydrolase_1	3.15
PF13474	SnoaL_3	2.36
PF07228	SpoIIE	2.36
PF00282	Pyridoxal_deC	2.36
PF13649	Methyltransf_25	2.36
PF12697	Abhydrolase_6	2.36
PF06983	3-dmu-9_3-mt	1.57
PF12852	Cupin_6	1.57
PF12681	Glyoxalase_2	1.57
PF14310	Fn3-like	1.57
PF00072	Response_reg	0.79
PF02426	MIase	0.79
PF00106	adh_short	0.79
PF13564	DoxX_2	0.79
PF08281	Sigma70_r4_2	0.79
PF07681	DoxX	0.79
PF01451	LMWPc	0.79
PF13620	CarboxypepD_reg	0.79
PF01842	ACT	0.79
PF00589	Phage_integrase	0.79
PF05988	DUF899	0.79
PF00004	AAA	0.79
PF05221	AdoHcyase	0.79
PF13520	AA_permease_2	0.79
PF09859	Oxygenase-NA	0.79
PF00753	Lactamase_B	0.79
PF12704	MacB_PCD	0.79
PF13417	GST_N_3	0.79
PF01548	DEDD_Tnp_IS110	0.79
PF07690	MFS_1	0.79
PF13437	HlyD_3	0.79
PF02894	GFO_IDH_MocA_C	0.79
PF12867	DinB_2	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	3.15
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	3.15
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	2.36
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	1.57
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	1.57
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.79
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.79
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.79
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.79
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.79
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.79
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.55 %
Unclassified	root	N/A	9.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.55 %
Unclassified	root	N/A	9.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.76 %
Unclassified	root	N/A	9.45 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.39 %
Unclassified	root	N/A	9.45 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.66 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.36 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.36 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.57 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.79 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.36 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	2.36 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	1.57 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.79 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.79 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.36 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	2.36 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.57 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.79 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.36 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2.36 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.57 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.79 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.79 %
Methylobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.36 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2.36 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.57 %
unclassified Methylobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → unclassified Methylobacter	0.79 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.79 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.36 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2.36 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.57 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.79 %
unclassified Nonomuraea	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → unclassified Nonomuraea	0.79 %
Methylobacter sp. BBA5.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → unclassified Methylobacter → Methylobacter sp. BBA5.1	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.36 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2.36 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.57 %
Nonomuraea sp. FMUSA5-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → unclassified Nonomuraea → Nonomuraea sp. FMUSA5-5	0.79 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.79 %
Methylobacter sp. BBA5.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → unclassified Methylobacter → Methylobacter sp. BBA5.1	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101753696	All Organisms → cellular organisms → Bacteria → Acidobacteria	1186	Open in IMG/M
3300000955\|JGI1027J12803_100241104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300000955\|JGI1027J12803_103864989	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	823	Open in IMG/M
3300004114\|Ga0062593_103407413	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300004156\|Ga0062589_100758802	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300005332\|Ga0066388_100806627	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300005332\|Ga0066388_101826872	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005332\|Ga0066388_103099398	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300005332\|Ga0066388_103894691	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300005332\|Ga0066388_104294137	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	726	Open in IMG/M
3300005332\|Ga0066388_107460509	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300005764\|Ga0066903_100576232	All Organisms → cellular organisms → Bacteria	1941	Open in IMG/M
3300005764\|Ga0066903_101069833	All Organisms → cellular organisms → Bacteria → Proteobacteria	1483	Open in IMG/M
3300005764\|Ga0066903_101124655	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005764\|Ga0066903_102037321	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300005764\|Ga0066903_102692979	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300005764\|Ga0066903_104233997	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300005764\|Ga0066903_104279591	All Organisms → cellular organisms → Bacteria → Proteobacteria	763	Open in IMG/M
3300005764\|Ga0066903_105390302	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005764\|Ga0066903_106387588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → unclassified Methylobacter → Methylobacter sp. BBA5.1	615	Open in IMG/M
3300005764\|Ga0066903_107721513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300005764\|Ga0066903_107799133	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300005764\|Ga0066903_108026303	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300005764\|Ga0066903_108689549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300006853\|Ga0075420_101328300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	617	Open in IMG/M
3300009792\|Ga0126374_10309369	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300009792\|Ga0126374_11187663	Not Available	610	Open in IMG/M
3300010043\|Ga0126380_10281387	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300010043\|Ga0126380_10303012	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300010047\|Ga0126382_10143559	All Organisms → cellular organisms → Bacteria	1623	Open in IMG/M
3300010047\|Ga0126382_10366833	All Organisms → cellular organisms → Bacteria → Proteobacteria	1110	Open in IMG/M
3300010047\|Ga0126382_10568697	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300010048\|Ga0126373_10021419	All Organisms → cellular organisms → Bacteria	5469	Open in IMG/M
3300010048\|Ga0126373_11400012	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300010358\|Ga0126370_10081889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2173	Open in IMG/M
3300010358\|Ga0126370_11683372	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300010358\|Ga0126370_11719691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300010359\|Ga0126376_10516228	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300010359\|Ga0126376_10758274	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300010359\|Ga0126376_11255474	Not Available	759	Open in IMG/M
3300010359\|Ga0126376_11350846	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010359\|Ga0126376_11729132	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	661	Open in IMG/M
3300010359\|Ga0126376_12063934	Not Available	613	Open in IMG/M
3300010359\|Ga0126376_13229455	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010360\|Ga0126372_11005045	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300010360\|Ga0126372_11014206	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010360\|Ga0126372_11234152	Not Available	773	Open in IMG/M
3300010360\|Ga0126372_11742135	Not Available	665	Open in IMG/M
3300010360\|Ga0126372_12376444	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300010361\|Ga0126378_10366641	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300010361\|Ga0126378_10645993	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300010361\|Ga0126378_11599528	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300010362\|Ga0126377_10264251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1681	Open in IMG/M
3300010362\|Ga0126377_10594031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1151	Open in IMG/M
3300010362\|Ga0126377_12066885	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300010362\|Ga0126377_12264356	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300010366\|Ga0126379_10000013	All Organisms → cellular organisms → Bacteria → Acidobacteria	80825	Open in IMG/M
3300010366\|Ga0126379_10194053	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300010366\|Ga0126379_10781599	All Organisms → cellular organisms → Bacteria → Acidobacteria	1053	Open in IMG/M
3300010376\|Ga0126381_100605761	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300010376\|Ga0126381_101701478	All Organisms → cellular organisms → Bacteria → Proteobacteria	911	Open in IMG/M
3300010376\|Ga0126381_102458926	Not Available	747	Open in IMG/M
3300010376\|Ga0126381_105147002	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300010398\|Ga0126383_11254047	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300010398\|Ga0126383_11588741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → unclassified Nonomuraea → Nonomuraea sp. FMUSA5-5	743	Open in IMG/M
3300010398\|Ga0126383_11839526	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300010398\|Ga0126383_12418250	Not Available	610	Open in IMG/M
3300010398\|Ga0126383_12792041	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	570	Open in IMG/M
3300010398\|Ga0126383_13221859	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012209\|Ga0137379_11143825	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012211\|Ga0137377_10453800	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300012350\|Ga0137372_10688205	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300012350\|Ga0137372_10932605	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300012357\|Ga0137384_11424659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300012360\|Ga0137375_10394388	All Organisms → cellular organisms → Bacteria → Acidobacteria	1212	Open in IMG/M
3300012363\|Ga0137390_10537181	All Organisms → cellular organisms → Bacteria → Acidobacteria	1141	Open in IMG/M
3300012915\|Ga0157302_10404650	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300012948\|Ga0126375_11471972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300012971\|Ga0126369_10028234	All Organisms → cellular organisms → Bacteria → Acidobacteria	4587	Open in IMG/M
3300012971\|Ga0126369_10199484	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300012971\|Ga0126369_10656807	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1123	Open in IMG/M
3300012971\|Ga0126369_10708197	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300012971\|Ga0126369_11356006	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300012971\|Ga0126369_11867304	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300012971\|Ga0126369_12666990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300015372\|Ga0132256_101333446	Not Available	830	Open in IMG/M
3300015373\|Ga0132257_102482203	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300015374\|Ga0132255_102194560	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300016294\|Ga0182041_12168356	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300016319\|Ga0182033_12159919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	508	Open in IMG/M
3300016341\|Ga0182035_10124676	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300016357\|Ga0182032_10246493	All Organisms → cellular organisms → Bacteria → Proteobacteria	1386	Open in IMG/M
3300016387\|Ga0182040_10319899	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300016387\|Ga0182040_11545831	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	564	Open in IMG/M
3300016422\|Ga0182039_11726163	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300018482\|Ga0066669_11178885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300021171\|Ga0210405_10321069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1223	Open in IMG/M
3300021560\|Ga0126371_13238601	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300021560\|Ga0126371_13936334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300025899\|Ga0207642_11146991	Not Available	503	Open in IMG/M
3300025906\|Ga0207699_10440260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	933	Open in IMG/M
3300026089\|Ga0207648_11921018	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300026343\|Ga0209159_1248546	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	541	Open in IMG/M
3300026557\|Ga0179587_10900127	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300031231\|Ga0170824_121034834	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031446\|Ga0170820_10669201	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300031474\|Ga0170818_103183166	Not Available	559	Open in IMG/M
3300031546\|Ga0318538_10360049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	786	Open in IMG/M
3300031640\|Ga0318555_10302420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	866	Open in IMG/M
3300031668\|Ga0318542_10213008	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	976	Open in IMG/M
3300031668\|Ga0318542_10630408	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031720\|Ga0307469_12215242	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031754\|Ga0307475_10781869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	758	Open in IMG/M
3300031769\|Ga0318526_10446413	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031781\|Ga0318547_10755555	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300031879\|Ga0306919_11204024	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300031910\|Ga0306923_11248315	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031941\|Ga0310912_10831980	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300031941\|Ga0310912_10983413	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300031946\|Ga0310910_11300105	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300031947\|Ga0310909_10087866	All Organisms → cellular organisms → Bacteria	2477	Open in IMG/M
3300032035\|Ga0310911_10259661	All Organisms → cellular organisms → Bacteria → Acidobacteria	995	Open in IMG/M
3300032066\|Ga0318514_10080511	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300032076\|Ga0306924_11969158	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300033290\|Ga0318519_10898067	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.28%
Host-Associated	Host-Associated	4.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.28%
Plants	Host-Associated → Plants	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.74%
Loam	Environmental → Terrestrial → Soil → Loam	16.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	43.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017536963	3300000364	Soil	LKLMEKNQNTDPFKFIIYSGKIGEQTPQINAGQAK*
JGI1027J12803_1002411041	3300000955	Soil	KRFAYLKLMEKNQNTDPFKFIIYSGKISEQTPQINAEDAK*
JGI1027J12803_1038649893	3300000955	Soil	LKLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHAK*
Ga0062593_1034074132	3300004114	Soil	KRAKRFAYLKLMEKNQNTDPFKFIIYSGRIGEQTPQINPGK*
Ga0062589_1007588021	3300004156	Soil	MTRAKRFVYLKLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHAK*
Ga0066388_1008066271	3300005332	Tropical Forest Soil	RFAYLKLMEKNQNTDPFKFIIYSGKIGEETPQLNAQNPQN*
Ga0066388_1018268721	3300005332	Tropical Forest Soil	KRAKRFAYLKLMEKNQNTDPFKFIIYSVKAGEQTPQINAAEPKQTRGPK*
Ga0066388_1030993982	3300005332	Tropical Forest Soil	VKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGERTPQINAEHAK*
Ga0066388_1038946912	3300005332	Tropical Forest Soil	GSDSLQHAKRFAYQKLMEKNQNTDPFKFIIYSGKIGEQTPQINAENIESKRTR*
Ga0066388_1042941371	3300005332	Tropical Forest Soil	NSETLKRAKRFAYLKLMEKNQNTDPFKFIIYSAKAGEQTRQINPEPVKETRGETR*
Ga0066388_1072902572	3300005332	Tropical Forest Soil	AYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPERAKKTPSATR*
Ga0066388_1074605091	3300005332	Tropical Forest Soil	RFAYLKLMEKNQNTDPFKFIIYSAKAGEQTPQMSGQEAKHPKR*
Ga0066903_1005762321	3300005764	Tropical Forest Soil	RFAYLKLMEKNQNTDPFKFIIYSGRIGEQTPQINVQ*
Ga0066903_1010698331	3300005764	Tropical Forest Soil	RFAYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPTDRHSVR*
Ga0066903_1011246551	3300005764	Tropical Forest Soil	YLKLMEKNQNTDPFKFIIYSGKIGEQTPQINGPR*
Ga0066903_1020373212	3300005764	Tropical Forest Soil	YLKLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHGQ*
Ga0066903_1026929792	3300005764	Tropical Forest Soil	VKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAESAK*
Ga0066903_1042339972	3300005764	Tropical Forest Soil	LKRAKRLAYLKLMEKNQNTDPFKFIIYSAQAGELTPQISAVQINETRGMK*
Ga0066903_1042795912	3300005764	Tropical Forest Soil	AKRLAYLKLMEKNQNTDPFKFIIYSAQAGELTPQINAVQINETRGVK*
Ga0066903_1053903022	3300005764	Tropical Forest Soil	AKRLAYLKLMEKNQNTDPFKFIIYSAQAGELTPQINAVQTNETRGMK*
Ga0066903_1063875881	3300005764	Tropical Forest Soil	AYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAERAK*
Ga0066903_1077215132	3300005764	Tropical Forest Soil	LRTAKRLAYLKLMEKHQNTDPFKFIIYSGKIREQTPQINAQQ*
Ga0066903_1077991332	3300005764	Tropical Forest Soil	KRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQIRGDDNR*
Ga0066903_1080263031	3300005764	Tropical Forest Soil	LKLMEKNQNTDPFKFIIYSGKIGEQTPQIHADDNR*
Ga0066903_1086895492	3300005764	Tropical Forest Soil	YLKLMEKNQNTDPFKFIIYSGKISEQTPQINAEDAK*
Ga0075420_1013283001	3300006853	Populus Rhizosphere	KRLAYLKLMEKHQNTDPFKFIIYSGKIREQTPQINPQQ*
Ga0126374_103093691	3300009792	Tropical Forest Soil	HAKRFAYLKLTEKNQNTDPFKFIIYSARIGEQTPQINAEQARSTRATR*
Ga0126374_111876631	3300009792	Tropical Forest Soil	KRFVYLKLMERNQNTDPFKFIIYSAKIGEQTPQINAEHLK*
Ga0126380_102813871	3300010043	Tropical Forest Soil	SNSLKRAKRFAYLKLIERNQNTDPFKFIIYSAKIREQVPQINPQDVKPR*
Ga0126380_103030123	3300010043	Tropical Forest Soil	KLMEKNQNTDPFKFIIYSAKIGEQTPQINSEHAE*
Ga0126382_101435591	3300010047	Tropical Forest Soil	KRFVYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHVKQTREATR*
Ga0126382_103668333	3300010047	Tropical Forest Soil	VIRARRFAYLKLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHSK*
Ga0126382_105686974	3300010047	Tropical Forest Soil	VYLKLMEKNQNTDPFKFIIYSAKIGEKTPQFNPSK*
Ga0126373_100214191	3300010048	Tropical Forest Soil	EGLKRAKRFAYLKLMEKNQNTDPFKFIIYSSKAGEQTPQINPGEVKQMRGAAR*
Ga0126373_114000121	3300010048	Tropical Forest Soil	AKRFAYLKLMEKNQNTDPFKFIIYSGKVGEQTPQINAEHAK*
Ga0126370_100818893	3300010358	Tropical Forest Soil	LKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAK*
Ga0126370_116833721	3300010358	Tropical Forest Soil	PRFSQRAKQFAYLKLMEKNQNTDPFKFIVYSGKIGEQTPQINAERAK*
Ga0126370_117196911	3300010358	Tropical Forest Soil	AKRLAYLKLMEKHQNTDPFKFIIYAGKIREQTPQINAQQ*
Ga0126370_124009392	3300010358	Tropical Forest Soil	ARRFAYLKLMEKNQNTDPFKFIIYSAKIGEQTPQINPERVKETRGATR*
Ga0126376_105162281	3300010359	Tropical Forest Soil	LKRTKRFAYLKLMEENQNTDPFKFIIYSSKGGEQIPQINREDAGKNRAEPR*
Ga0126376_107582741	3300010359	Tropical Forest Soil	VKRAKRFAYLKLMEKNQNTDPFKFIIYSWKVGEQTPQINAKHAK*
Ga0126376_112554742	3300010359	Tropical Forest Soil	FAYLKLMEENQNTDPFKFIIYSAKIGEQTPQINAEHAM*
Ga0126376_113508463	3300010359	Tropical Forest Soil	FPNSEALKRRKRFAYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPTDRHSVR*
Ga0126376_117291321	3300010359	Tropical Forest Soil	RFAYLKLMEENQNTDPFKFIIYSAKIGEQTPQINAEHAK*
Ga0126376_120639342	3300010359	Tropical Forest Soil	TAKRLAYLKLMEKHQNTDPFKFIIYAGKIREQTPQINAQP*
Ga0126376_132294551	3300010359	Tropical Forest Soil	LKRAKRFAYLKLMEKNQNTDPFKFIIYSAKIGEQTPQINAESAKAATR*
Ga0126372_110050451	3300010360	Tropical Forest Soil	VKFPGSDSVKRAKRFAYLKLMEKNQDPFKFIIYSGKIGEQTPQMNGERVK*
Ga0126372_110142061	3300010360	Tropical Forest Soil	SDSVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINPERAN*
Ga0126372_112341522	3300010360	Tropical Forest Soil	KYPDSQALKRATRFVYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINNEHLK*
Ga0126372_117421351	3300010360	Tropical Forest Soil	KRFAYLKRMEKNQNTDPFKFIIYSVKAGEQTPQLNAQDVKLQKR*
Ga0126372_123764442	3300010360	Tropical Forest Soil	RFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINSEHAK*
Ga0126378_103666411	3300010361	Tropical Forest Soil	KRTKRFVYLKLMERNQNTDPFKFIIYSAKIGEQTPQMNAEHLK*
Ga0126378_106459933	3300010361	Tropical Forest Soil	KFPGSDSVKRAKRFAYLKSMEKNQNTDAFKFIIYSGKIGEQTPQINAKSAK*
Ga0126378_115995283	3300010361	Tropical Forest Soil	KLMEKNQNTDPFKFSIYSAKAGEQTPQMSAQEAKHPKR*
Ga0126377_102642511	3300010362	Tropical Forest Soil	SDSVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKISEQTPQINLDR*
Ga0126377_105940311	3300010362	Tropical Forest Soil	RFTYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINPENAKQKEGSRR*
Ga0126377_120668852	3300010362	Tropical Forest Soil	AKRFAYRKLMEKNQNTDPFKFIIYSARIGQETRQINADSAK*
Ga0126377_122643562	3300010362	Tropical Forest Soil	AKRFAYFKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAK*
Ga0126379_100000131	3300010366	Tropical Forest Soil	DSVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAK*
Ga0126379_101940532	3300010366	Tropical Forest Soil	MQAKRFAYLKLMEKNQNTDPFKFIIYSGKISEQTPQINAEDAK*
Ga0126379_107815991	3300010366	Tropical Forest Soil	LKLMEKNQNTDPFKFIIYSAKAGEQTPQINSEDVKRPHVTAR*
Ga0126381_1006057613	3300010376	Tropical Forest Soil	SDSVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAN*
Ga0126381_1017014781	3300010376	Tropical Forest Soil	RFAYLKLMEKNQNTDPFKFIIYSGKISEQTPQINAEDAK*
Ga0126381_1024589261	3300010376	Tropical Forest Soil	GSDSLKRVKRLVYLKLMEKSQNTDPFKFIIYSAKIGEQTPQINPQNVKPR*
Ga0126381_1051470022	3300010376	Tropical Forest Soil	AYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINSEDVKRPHVTAR*
Ga0126383_112540471	3300010398	Tropical Forest Soil	KRAKRFAYLKLMEKNQNTDPFKFIIYSSKAGEQTPQINPGEVKQMRGAAR*
Ga0126383_115887411	3300010398	Tropical Forest Soil	YLKLMEKNQNTDPFKFIIYSAKIGEETPQINPAK*
Ga0126383_118395261	3300010398	Tropical Forest Soil	KRARRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAK*
Ga0126383_124182502	3300010398	Tropical Forest Soil	FAYLKLMEKNQNTDPFKFIIYSGKACEQTPQMNPQDVKHPKS*
Ga0126383_127920412	3300010398	Tropical Forest Soil	YLKLMEKNQNTDPFKFIIYSAKIGEQTPQITAEPAK*
Ga0126383_132218592	3300010398	Tropical Forest Soil	VKRAKRFAYLKLMEKNQNTDPFKFIIYSGRIGEQTPQINAESTK*
Ga0137379_111438251	3300012209	Vadose Zone Soil	KRAKRFAYLKLMEKNQNTDPFKFIIYSGKIQQETPQINGGQIR*
Ga0137377_104538001	3300012211	Vadose Zone Soil	KLMEKNQNTDPFKFIIYSGKVHEETPQINAEQTK*
Ga0137372_106882052	3300012350	Vadose Zone Soil	LKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIQQETPQINAEQAK*
Ga0137372_109326051	3300012350	Vadose Zone Soil	FAYLKLMEKNQNTDPFKFIIYSTRAGEQTPQINAEVAK*
Ga0137384_114246591	3300012357	Vadose Zone Soil	KRAKRFAYLKLMEKNQNTDPFKFIIYSTKAGEQTPQINPEDVKQTGTATR*
Ga0137375_103943882	3300012360	Vadose Zone Soil	KRAKRFAYLKLMEKNQNTDPFKFIIYSGKIQQETPQINGGEI*
Ga0137390_105371811	3300012363	Vadose Zone Soil	NAKRLVYLKLMEKHQNTDPFKFIIYSGKISEQTPQVTATK*
Ga0157302_104046501	3300012915	Soil	YLKLMEKNQNTDPFKFIIYSGKIGEQTPQINPGK*
Ga0126375_114719722	3300012948	Tropical Forest Soil	KLMEKNQNTDPFKFIIYSGKISEQTPQINAEDAK*
Ga0126369_100282344	3300012971	Tropical Forest Soil	RLTYLKLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHGQ*
Ga0126369_101994842	3300012971	Tropical Forest Soil	DSVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAERSK*
Ga0126369_106568071	3300012971	Tropical Forest Soil	KLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHGQ*
Ga0126369_107081972	3300012971	Tropical Forest Soil	FAYLKLMEKSQNTDPFKFIIYSARIGEETPQINAERAKQMPTPTQ*
Ga0126369_113560061	3300012971	Tropical Forest Soil	KRAKRFAYLKLMEKSQNTDPFKFIIYSAKAGEQTPQINADDVKETRGAKR*
Ga0126369_118673042	3300012971	Tropical Forest Soil	KRAKRFAYLKLMEKSQNTDPFKFIIYSAKAGEQTPQINADDVKETRGGKR*
Ga0126369_126669901	3300012971	Tropical Forest Soil	RAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINSVR*
Ga0132256_1013334461	3300015372	Arabidopsis Rhizosphere	KRAKRFAYLKLMEKNQNTDPFKFIIYSTKAGEQTPQANPEDGGAGRN*
Ga0132257_1024822031	3300015373	Arabidopsis Rhizosphere	RAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAESTK*
Ga0132255_1021945601	3300015374	Arabidopsis Rhizosphere	KRFAYLKLMERNQNADPFEFIIYSGQIGEQTPQMNAENAK*
Ga0182041_121683562	3300016294	Soil	KRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAEHAK
Ga0182033_121599191	3300016319	Soil	YLKLMEKNQNTDPFKFIIYSARIGEQTPQMNAEHSK
Ga0182035_101246761	3300016341	Soil	RFAYLKLMEKNQNTDPFKFIIYSRKIGEQTPQINAEHAR
Ga0182032_102464931	3300016357	Soil	LKLMEKNQNTDPFKFIIYSTKAGEQTPQINGADAK
Ga0182040_103198991	3300016387	Soil	SEALKRAKRFAYLKLMEKNQNTDPFKFIIYSAKISEQTPQINGELSK
Ga0182040_115458311	3300016387	Soil	KRARRLTYLKLMEKNQNTDPFKFIIYSAKIGEQTPQINAEHGQ
Ga0182039_117261631	3300016422	Soil	PNSEALERTKRFTYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPEDVKQMRGAER
Ga0066669_111788851	3300018482	Grasslands Soil	RAKRFAYLKLMEKNQNTDPFKFIIYSGKIGEQTPQINAQRAK
Ga0210405_103210691	3300021171	Soil	KRFAYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPEDVKETGGSTR
Ga0126371_132386011	3300021560	Tropical Forest Soil	RGKVSWQRFSQRAKRFAYLKLMEKNQNTDPFKFIIYSGKISEQTPQINAEDAK
Ga0126371_139363341	3300021560	Tropical Forest Soil	YVYLKLMEKNQNTDPFKFIIYSGKISEQTPQINAEDRK
Ga0207642_111469912	3300025899	Miscanthus Rhizosphere	GSVRSAKRFAYLKLMERNQNTDPFKFIIYSAQIGEQTPQMNVENAK
Ga0207699_104402601	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	KNAKRFAYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPEDVKETGGSAR
Ga0207648_119210182	3300026089	Miscanthus Rhizosphere	LKLMEKNQNTDPFKFIIYSGQIGEQTPQINGESAK
Ga0209159_12485462	3300026343	Soil	PDSVSLKRAKRFAYLKLVEKNQNTDPFKFIIYSGRIREQTPQINAQK
Ga0179587_109001272	3300026557	Vadose Zone Soil	RAKRFAYLKLMEKNQNTDPFKFIIYSAEAGEQTRQINPEDVKQARGATR
Ga0170824_1210348342	3300031231	Forest Soil	SLKRAKRFAYLKLMEKNQNTDPFKFIIYSGRIGEQTPQINPGK
Ga0170820_106692011	3300031446	Forest Soil	RAKRFTYLKLMEKNQNTDPFKYIIYSMKAGEQTPQINGGGR
Ga0170818_1031831661	3300031474	Forest Soil	DSLKRAKRFAYLKLMEKNQNTDPFKFIIYSARIGEQTPQINAEHAK
Ga0318538_103600493	3300031546	Soil	LKLMEKNQNTDPFKFIIYSAKIGEQTPQINGELSK
Ga0318555_103024202	3300031640	Soil	AKRFAYLKLMEKNQNTDPFKFIIYSGKVGEQTPQINAERAK
Ga0318542_102130081	3300031668	Soil	SVKRARRFAYLKLMEKNQNTDPFKFIIYSGKVGEQTPQINAERAK
Ga0318542_106304081	3300031668	Soil	VKRAKRFAYLKLMEKNQNTDPFKFIIYSARIGEQTPQINAEHAQ
Ga0307469_122152421	3300031720	Hardwood Forest Soil	SDSLKRAKRFAYLKLMEKNQNTDPFKFIIYSARIGEQTPQINAEHAK
Ga0307475_107818692	3300031754	Hardwood Forest Soil	HSEALKNAKGFAYLKLMEKNQNTDPFKFIIYSAKAGEQTPQINPEDAKETGGSTR
Ga0318526_104464133	3300031769	Soil	SDSVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGERTPQINAEHAK
Ga0318547_107555552	3300031781	Soil	TKRFVYLKLMEKNQNTDPFKFIIYSTKAGEQTPQINGADAK
Ga0306919_112040241	3300031879	Soil	KRVKRFAYLKLMEKNQNTDPFKFIIYSARIGEQTPQINAERAK
Ga0306923_112483152	3300031910	Soil	LKLIEKNQNTDPFKFIIYSAKIGEQTLQINGADAK
Ga0310912_108319801	3300031941	Soil	RAKRFAYLKLMEKNQNTDPFKFIIYSAKISEQTPQINGELSK
Ga0310912_109834132	3300031941	Soil	VYLKLIEKNQNTDPFKFIIYSAKIGEQTLQINGADAK
Ga0310910_113001052	3300031946	Soil	AKRLVYLKLMEKSQNTDPFKFIIYSAKIGEQTPQINPQDVKPR
Ga0310909_100878661	3300031947	Soil	AYLKLMEKNQNTDPFKFIIYSARIGEQTPQINAERAK
Ga0310911_102596612	3300032035	Soil	FAYLKLMEKNQNTDPFKFIIYSGKIGERTPQINAEHAK
Ga0318514_100805115	3300032066	Soil	SVKRAKRFAYLKLMEKNQNTDPFKFIIYSGKIGERTPQINAEHAK
Ga0306924_119691581	3300032076	Soil	ALKRAKRFAYLKLMEKNQNTDPFKFIIYSARIGEQTPQMNAEHSK
Ga0318519_108980671	3300033290	Soil	KRARRFAYLKLMEKNQNTDPFKFIIYSGKVGEQTPQINAERAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F065496

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences