NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F065498

Metagenome / Metatranscriptome Family F065498

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F065498
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 62 residues
Representative Sequence VTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAVALFLLLWLGQREALVPGRRALVRSRDT
Number of Associated Samples 110
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.89 %
% of genes near scaffold ends (potentially truncated) 23.62 %
% of genes from short scaffolds (< 2000 bps) 78.74 %
Associated GOLD sequencing projects 104
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.850 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(11.811 % of family members)
Environment Ontology (ENVO) Unclassified
(30.709 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(42.520 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 60.00%    β-sheet: 0.00%    Coil/Unstructured: 40.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF01425Amidase 53.54
PF01966HD 25.98
PF01551Peptidase_M23 3.15
PF03330DPBB_1 1.57
PF00477LEA_5 1.57
PF01523PmbA_TldD 0.79
PF00155Aminotran_1_2 0.79
PF00903Glyoxalase 0.79
PF04203Sortase 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 53.54
COG0312Zn-dependent protease PmbA/TldA or its inactivated homologGeneral function prediction only [R] 0.79
COG3764Sortase (surface protein transpeptidase)Cell wall/membrane/envelope biogenesis [M] 0.79

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.85 %
UnclassifiedrootN/A3.15 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c0778253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2749Open in IMG/M
3300001661|JGI12053J15887_10132054All Organisms → cellular organisms → Bacteria1326Open in IMG/M
3300004156|Ga0062589_100936156All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300004643|Ga0062591_100886086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium835Open in IMG/M
3300005093|Ga0062594_100711603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium909Open in IMG/M
3300005166|Ga0066674_10007332All Organisms → cellular organisms → Bacteria4421Open in IMG/M
3300005172|Ga0066683_10198456All Organisms → cellular organisms → Bacteria1239Open in IMG/M
3300005293|Ga0065715_10001274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium9617Open in IMG/M
3300005294|Ga0065705_10234413All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300005330|Ga0070690_100543665All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium875Open in IMG/M
3300005336|Ga0070680_100741659All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300005341|Ga0070691_10078201All Organisms → cellular organisms → Bacteria1615Open in IMG/M
3300005343|Ga0070687_100964720All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300005344|Ga0070661_100537414All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium939Open in IMG/M
3300005345|Ga0070692_10001106All Organisms → cellular organisms → Bacteria9409Open in IMG/M
3300005353|Ga0070669_101314828All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300005440|Ga0070705_100526981All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300005444|Ga0070694_100573701All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300005444|Ga0070694_101277029All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium617Open in IMG/M
3300005445|Ga0070708_100849578All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300005445|Ga0070708_101225900All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300005446|Ga0066686_10304737All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300005457|Ga0070662_100988618All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300005518|Ga0070699_101022683All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300005540|Ga0066697_10073034All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1972Open in IMG/M
3300005549|Ga0070704_101024295All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300005559|Ga0066700_10630071All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300006031|Ga0066651_10044417All Organisms → cellular organisms → Bacteria2054Open in IMG/M
3300006032|Ga0066696_10591781All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300006049|Ga0075417_10001280All Organisms → cellular organisms → Bacteria6819Open in IMG/M
3300006049|Ga0075417_10070590All Organisms → cellular organisms → Bacteria1546Open in IMG/M
3300006049|Ga0075417_10103776All Organisms → cellular organisms → Bacteria1291Open in IMG/M
3300006852|Ga0075433_10342058All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300006854|Ga0075425_100749376All Organisms → cellular organisms → Bacteria1120Open in IMG/M
3300006871|Ga0075434_100395671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1403Open in IMG/M
3300006876|Ga0079217_10053702All Organisms → cellular organisms → Bacteria1630Open in IMG/M
3300006876|Ga0079217_11600196All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300006880|Ga0075429_101655843Not Available556Open in IMG/M
3300006894|Ga0079215_10340182All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300006903|Ga0075426_10033114All Organisms → cellular organisms → Bacteria3694Open in IMG/M
3300006918|Ga0079216_10506775All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300007004|Ga0079218_10386098All Organisms → cellular organisms → Bacteria1185Open in IMG/M
3300007004|Ga0079218_10534563All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300007004|Ga0079218_12241034All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300009089|Ga0099828_10068191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3004Open in IMG/M
3300009148|Ga0105243_10349917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1356Open in IMG/M
3300010333|Ga0134080_10055896All Organisms → cellular organisms → Bacteria1560Open in IMG/M
3300010333|Ga0134080_10708051All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300010373|Ga0134128_13039524All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300010400|Ga0134122_11064088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium798Open in IMG/M
3300012206|Ga0137380_10272606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1521Open in IMG/M
3300012226|Ga0137447_1088822Not Available606Open in IMG/M
3300012349|Ga0137387_10108662All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1942Open in IMG/M
3300012351|Ga0137386_11183990All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300012354|Ga0137366_10220628All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1411Open in IMG/M
3300012360|Ga0137375_11271961Not Available558Open in IMG/M
3300012912|Ga0157306_10266322All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium612Open in IMG/M
3300012944|Ga0137410_11122478All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium674Open in IMG/M
3300017654|Ga0134069_1319545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium554Open in IMG/M
3300017997|Ga0184610_1215358All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300018000|Ga0184604_10056783All Organisms → cellular organisms → Bacteria1100Open in IMG/M
3300018028|Ga0184608_10001212All Organisms → cellular organisms → Bacteria7452Open in IMG/M
3300018031|Ga0184634_10002202All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi5980Open in IMG/M
3300018051|Ga0184620_10206219All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300018056|Ga0184623_10003493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium6724Open in IMG/M
3300018056|Ga0184623_10322704All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300018063|Ga0184637_10282630All Organisms → cellular organisms → Bacteria1007Open in IMG/M
3300018071|Ga0184618_10043721All Organisms → cellular organisms → Bacteria1601Open in IMG/M
3300018071|Ga0184618_10065202All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1360Open in IMG/M
3300018075|Ga0184632_10490010All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300018076|Ga0184609_10029848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2233Open in IMG/M
3300018077|Ga0184633_10177776All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300018079|Ga0184627_10637461All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300019255|Ga0184643_1327028All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium573Open in IMG/M
3300019269|Ga0184644_1016659All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300020003|Ga0193739_1017427All Organisms → cellular organisms → Bacteria1872Open in IMG/M
3300021073|Ga0210378_10132015All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300021078|Ga0210381_10091067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium978Open in IMG/M
3300021080|Ga0210382_10006662All Organisms → cellular organisms → Bacteria3797Open in IMG/M
3300021080|Ga0210382_10049362All Organisms → cellular organisms → Bacteria1651Open in IMG/M
3300021080|Ga0210382_10243356All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300022534|Ga0224452_1118549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium813Open in IMG/M
3300025119|Ga0209126_1127070All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300025885|Ga0207653_10000157All Organisms → cellular organisms → Bacteria48136Open in IMG/M
3300025907|Ga0207645_10325808All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300025910|Ga0207684_10000013All Organisms → cellular organisms → Bacteria443468Open in IMG/M
3300025910|Ga0207684_10379802All Organisms → cellular organisms → Bacteria1215Open in IMG/M
3300025917|Ga0207660_10147031All Organisms → cellular organisms → Bacteria1807Open in IMG/M
3300025922|Ga0207646_10001158All Organisms → cellular organisms → Bacteria33510Open in IMG/M
3300025922|Ga0207646_10406597All Organisms → cellular organisms → Bacteria1229Open in IMG/M
3300025933|Ga0207706_10954006All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300025936|Ga0207670_10257576All Organisms → cellular organisms → Bacteria1351Open in IMG/M
3300025981|Ga0207640_10724445All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300026075|Ga0207708_10078619All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2533Open in IMG/M
3300026116|Ga0207674_10261005All Organisms → cellular organisms → Bacteria1679Open in IMG/M
3300026314|Ga0209268_1006142All Organisms → cellular organisms → Bacteria5217Open in IMG/M
3300026320|Ga0209131_1069811All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1922Open in IMG/M
3300026327|Ga0209266_1207962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium699Open in IMG/M
3300026536|Ga0209058_1212461All Organisms → cellular organisms → Bacteria770Open in IMG/M
3300026548|Ga0209161_10020741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium4716Open in IMG/M
3300026548|Ga0209161_10133126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1455Open in IMG/M
3300027526|Ga0209968_1053466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium704Open in IMG/M
3300027546|Ga0208984_1135592Not Available529Open in IMG/M
3300027637|Ga0209818_1075124All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300027655|Ga0209388_1098056All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300027669|Ga0208981_1009119All Organisms → cellular organisms → Bacteria2509Open in IMG/M
3300027695|Ga0209966_1138926All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300027717|Ga0209998_10086602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium764Open in IMG/M
3300027846|Ga0209180_10394246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium785Open in IMG/M
3300027873|Ga0209814_10006894All Organisms → cellular organisms → Bacteria4390Open in IMG/M
3300027873|Ga0209814_10081632All Organisms → cellular organisms → Bacteria1364Open in IMG/M
3300027875|Ga0209283_10067793All Organisms → cellular organisms → Bacteria2294Open in IMG/M
3300027961|Ga0209853_1022988All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1875Open in IMG/M
3300028380|Ga0268265_10627706All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300028715|Ga0307313_10064071All Organisms → cellular organisms → Bacteria1091Open in IMG/M
3300028796|Ga0307287_10379397All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300028814|Ga0307302_10186038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1012Open in IMG/M
3300028819|Ga0307296_10019785All Organisms → cellular organisms → Bacteria3543Open in IMG/M
3300028828|Ga0307312_10087079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1919Open in IMG/M
3300028878|Ga0307278_10007349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium5213Open in IMG/M
3300028881|Ga0307277_10029475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2178Open in IMG/M
3300028881|Ga0307277_10067826All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1476Open in IMG/M
3300028884|Ga0307308_10022365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2910Open in IMG/M
3300031965|Ga0326597_10021785All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi8272Open in IMG/M
3300032180|Ga0307471_100270110All Organisms → cellular organisms → Bacteria1768Open in IMG/M
3300033811|Ga0364924_079503All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300034773|Ga0364936_033638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium897Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment11.02%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil10.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.45%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.87%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.87%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil6.30%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment5.51%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.36%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.36%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.36%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.36%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.36%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.57%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.57%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.57%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.57%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.79%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.79%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.79%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012226Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2EnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300019255Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019269Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300022534Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1EnvironmentalOpen in IMG/M
3300025119Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027526Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027546Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027637Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027669Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027961Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033811Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17EnvironmentalOpen in IMG/M
3300034773Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_077825313300000033SoilRSRVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIESAVALFLLLWLAERETLVPRSSALVRSRDT*
JGI12053J15887_1013205423300001661Forest SoilVTGCGCLLLIAALVGLIAFMVFGSTDPGAPIETAVALLLVLWLGQRQTLVPRRRVLVRSRDA*
Ga0062589_10093615623300004156SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRTFVRSRDT*
Ga0062591_10088608623300004643SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRPLVRSRDT*
Ga0062594_10071160323300005093SoilIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRTFVRSRDT*
Ga0066674_1000733213300005166SoilVTGCGCVLLIAALVGLILFLVFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRDA*
Ga0066683_1019845623300005172SoilVTGCGCLLLIAALIGLIALLVFGSTDPGEPIETAVALLVLLWSGQRQAFVPGRRVLVRSGNA*
Ga0065715_1000127433300005293Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAXALFLLLWLAQRETLVPRGRALVRSRDT*
Ga0065705_1023441323300005294Switchgrass RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRALVRSRDT*
Ga0070690_10054366513300005330Switchgrass RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPR
Ga0070680_10074165923300005336Corn RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAVALFLLLSLGQREALVPGRRALVRSRDT*
Ga0070691_1007820123300005341Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAVALFLLLLLGQREALVPGRRALVRSRDT*
Ga0070687_10096472013300005343Switchgrass RhizosphereARSRVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRGRALVRSRDT*
Ga0070661_10053741413300005344Corn RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRTFVRSRDTQ
Ga0070692_1000110633300005345Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRGRALVRSRDT*
Ga0070669_10131482823300005353Switchgrass RhizosphereLLIAALVGLIVFMIFGSTDSGEPIETAAALILIWLAQRETLVPRCRALVRSRDT*
Ga0070705_10052698123300005440Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVIFLGQRLALVPGRRVLVRSGDAEE*
Ga0070694_10057370123300005444Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLVIVALVGLIVFMMFGSTDSGEPIESAVALFLLLLLAERETLVPRRRLLVRSRDT*
Ga0070694_10127702913300005444Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRSGDAQE*
Ga0070708_10084957823300005445Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRARDA*
Ga0070708_10122590013300005445Corn, Switchgrass And Miscanthus RhizosphereRVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAAALILIWLAQRETLVPRCRALVRSRDT*
Ga0066686_1030473723300005446SoilVTGCGCLLLIGALVGLIVLLIFGSTDPGEPIETAVALFALLWSGKRQAFVPRRHVLVGTRDA*
Ga0070662_10098861823300005457Corn RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALVLLLWLAQRETLVPRRRTFVRSRDT*
Ga0070699_10102268323300005518Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAVALFLLLWLGQREALVPGRRALVRSRDT*
Ga0066697_1007303423300005540SoilVTGCGCVLLIAALVGLIFFLVFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRDA*
Ga0070704_10102429513300005549Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAAALILIWLAQRETLVPRCRALVRSRDT*
Ga0066700_1063007123300005559SoilRSGVTGCGCVLLIAALVGLILFLIFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRDA*
Ga0066651_1004441723300006031SoilVTGCGCVLLIAALVGLILFLVFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRGA*
Ga0066696_1059178113300006032SoilVTGCGCVLLIAALVGLILFLIFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVL
Ga0075417_1000128083300006049Populus RhizosphereVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPVETAAALLLLMSLGERLSLVPRRRALVRARDA*
Ga0075417_1007059023300006049Populus RhizosphereVTGCGCLLLIAALVGLIVFLIFGSTDPGEPIESAVALLLLLLLGQRQTFVPRRGLLVRARDA*
Ga0075417_1010377623300006049Populus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDTGEPIESAVALLLLLWLTERETLVPRRRALVRSRDT*
Ga0075433_1034205823300006852Populus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRSGDAEE*
Ga0075425_10074937623300006854Populus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRTGDAQE*
Ga0075434_10039567133300006871Populus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRTLVRSRDT*
Ga0079217_1005370223300006876Agricultural SoilVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPVETAAALLLLVLLGERLSLVPRRRVLVRTRDV*
Ga0079217_1160019613300006876Agricultural SoilGVTGCGCVLLIAFLVGLIVLLIFGSTDPGEPIETAAALLALLLLGERQALVPLGRALVRARGA*
Ga0075429_10165584313300006880Populus RhizosphereVTGCGCVLLIAFLVGIIVFLIFGSTDPGEPIETAVALSLLLWLGQRQTLVPGRRVLVRPRHP*
Ga0079215_1034018223300006894Agricultural SoilVTGCGCLLLIAAIVGLIVFMIFGSTDAGEPVETAAALLLLVLLGKRLALVPRRRVLVRTRDA*
Ga0075426_1003311423300006903Populus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVMSLGQRLALVPGRRVLVRSGDAQE*
Ga0079216_1050677513300006918Agricultural SoilARSRVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPIETAAALLLLVLLGERLSLVPRRRVLVRTRDV*
Ga0079218_1038609823300007004Agricultural SoilVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPIETAAALLLLVLLGERLSLVPRRRVLVRTRDA*
Ga0079218_1053456323300007004Agricultural SoilVTGCGCLLLIAAIVGLIVFMIFGSTDAGEPIDTAVALLLLLLLGQRQALVPRRRLLIRARDA*
Ga0079218_1224103423300007004Agricultural SoilVTGCGCLLAIAVIVGLIVFMIFGSTDAGAPTETAVAVLLALLLGERLALVPLRRVLVRARDA*
Ga0099828_1006819113300009089Vadose Zone SoilVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVMSLGQRLALVPGRRVLVRSGGA*
Ga0105243_1034991713300009148Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAAALLLMWLAQRETLVPRRRALVRSRDT*
Ga0134080_1005589623300010333Grasslands SoilIGALVGLIVLLIFGSTDSGEPIETAVALFALLWSGKRQAFVPRRHVLVGTRDA*
Ga0134080_1070805123300010333Grasslands SoilVTGCGCLLLIAALIGLIALLVFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLIGSRDA*
Ga0134128_1303952413300010373Terrestrial SoilVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAAALLLIWLAQRETLVPRRRALVRSRDT*
Ga0134122_1106408813300010400Terrestrial SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAAALFLMWLAQRETLVPRRRALVRSRDT*
Ga0137380_1027260633300012206Vadose Zone SoilVTGCGCLLLIAALVGLIALLVFGSTDPGEPIETAVALLVLLWSGQRQAFVPGCRVFVRSGNA*
Ga0137447_108882223300012226SoilVTGCGCLLLIAAIVGLIVFLIFGSTDAGEPIETAVALLLLLLLGQRPALVPRRRVFVRARDA*
Ga0137387_1010866243300012349Vadose Zone SoilVTGCGCLLLIAALVGLIALLVFGSTDPGEPIETAVALLVLLWSGQRQAFVPGRRVFVRSGNA*
Ga0137386_1118399013300012351Vadose Zone SoilGVTGCGCVLLIAALVGLILFLVFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRDA*
Ga0137366_1022062813300012354Vadose Zone SoilVTGCGCLLLIGALVGLIVLLIFGSTDPGEPIETAVALLALLWSGQRQAFVPRRHVLVGTRDS*
Ga0137375_1127196113300012360Vadose Zone SoilVTGCGCLLIIAMLVGLIVFLIFGSTDPGEPIESAVALLVVLWSAERQALVPARRALVRSRDA*
Ga0157306_1026632213300012912SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIESAVALLLLLWLAQRETLVPRRRAL
Ga0137410_1112247823300012944Vadose Zone SoilVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVMSLGQRLALVPGRRVLVRSGDA*
Ga0134069_131954513300017654Grasslands SoilVTGCGCLLLIAALVGLIALLVFGSTDPGEPTQTAVALLVLLWSGQRQAFVPGRR
Ga0184610_121535823300017997Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWSGQRQPFVPRGRALIGARDA
Ga0184604_1005678313300018000Groundwater SedimentSRVTGCGCLLLIAALVGLIVFMIFGSTDSGAPIETAVALFLLMWLAQREALVPRRRALVGSRDT
Ga0184608_1000121283300018028Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDAGEPIETAVALFLLVWLAQREALVPRRRALVRSRDA
Ga0184634_10002202103300018031Groundwater SedimentVTGCGCLLLITAIVGLIVFLIFGSTDAGEPIETAVALFLLMLLGQRLAFVPRRRMLVRARDA
Ga0184620_1020621923300018051Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQREALVPRRRALVGSRDT
Ga0184623_1000349353300018056Groundwater SedimentVTGCGCLLLIAAIVGLIVFLIFGSTDAGEPIETAAALLLLVLLGQRLALVPRRRVLVRARDA
Ga0184623_1032270423300018056Groundwater SedimentVTGCGCVLLIAAIVGLIVFLIFGSTDAGEPIETAVALFLLLLGQRLALVPRRRMLVRARD
Ga0184637_1028263023300018063Groundwater SedimentVTGCGCLLLIAAIVGLIVFLIFGSTDAGEPIETAVALLLLMLLGQRLALVPRRRMLVRARDA
Ga0184618_1004372123300018071Groundwater SedimentVTGCGCLLVVAALVGLIVFMVFGSTDPGEPIETAVALLLVLWLGERQALVPRRRVLVRPRDA
Ga0184618_1006520223300018071Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALSLLVWLAQRETLVPRRRALVRSRNT
Ga0184632_1049001023300018075Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPISSAVMLFVLLWLAQRETLVPRRRALVRSRDT
Ga0184609_1002984823300018076Groundwater SedimentVTGCGCLLLIAAIVGLIVFMIFGSTDSGEPVETAAALLLLVLLGQRSAFVPLRRVLVRARDA
Ga0184633_1017777623300018077Groundwater SedimentLLIAALVGLNVFLIFGSTDSGEPIETAVALLLVLWLGKRLALVPRRRSFVRPRDP
Ga0184627_1063746123300018079Groundwater SedimentVTGCGCILLIAAIVGLIVFLIFGSTDAGEPIETAAALLLLVLLGQRLALVPRRRSFVRPRDT
Ga0184643_132702813300019255Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIESAVALFLLLWLAQRQPLVPRRRALVRSR
Ga0184644_101665923300019269Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIDSAVALLLLLWLAQWETLVPRRRALVRSRDT
Ga0193739_101742723300020003SoilVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPVETAAALLLLVLLGQRLAFVPLRRVLVRARDA
Ga0210378_1013201523300021073Groundwater SedimentVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPVETAAALLLLALLGQRLAFMPLRGLLVRARDA
Ga0210381_1009106713300021078Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLMWLAQREALVPRRRALVGSRDT
Ga0210382_1000666223300021080Groundwater SedimentVTGCGCLLLIAALVGLILFMIFGSTDPGAPIETAVALLLVLSLGQGQTLVPRRRILVRARDA
Ga0210382_1004936213300021080Groundwater SedimentGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALSLLVWLAQRETLVPRRRALVRSRNT
Ga0210382_1024335623300021080Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAERETLVPRRRALVRSRDT
Ga0224452_111854923300022534Groundwater SedimentVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAERETLVPRRRALIRSREA
Ga0209126_112707023300025119SoilVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPIEAAAALLLLALLGQRLALMPRRRVLVRARDA
Ga0207653_10000157183300025885Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRGRALVRSRDT
Ga0207645_1032580823300025907Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRTFVRSRDT
Ga0207684_10000013453300025910Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLIIAALVGLGVFLIFGSTDPGEPIETAVALFAALSLGQRLALVPGRRMLVRARRA
Ga0207684_1037980223300025910Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRARDA
Ga0207660_1014703133300025917Corn RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAVALFLLLSLGQREALVPGRRALVRSRDT
Ga0207646_10001158113300025922Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRSGDAQE
Ga0207646_1040659723300025922Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFLIFGSTDPGEPIETAAALLAASLLMERQSLVPLRRALVGAGGA
Ga0207706_1095400623300025933Corn RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALVLLLWLAQRETLVPRRRTFVRSRDT
Ga0207670_1025757623300025936Switchgrass RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRALVRSRDT
Ga0207640_1072444523300025981Corn RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAAALILIWLAQRETLVPRRRALVRSRD
Ga0207708_1007861913300026075Corn, Switchgrass And Miscanthus RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDPGEPIETAVALFLLLLLGQREALVPGRRALVRSRDT
Ga0207674_1026100523300026116Corn RhizosphereVTGCGCLLLIAALAGLIVFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRTFVRSRDT
Ga0209268_100614253300026314SoilVTGCGCVLLIAALVGLILFLVFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRD
Ga0209131_106981123300026320Grasslands SoilVTGCGCLILIAVLVGLIVFMVFGSTDAGAPIESAVALLVLVLLAERVALVPRRRALVGSRDA
Ga0209266_120796223300026327SoilVTGCGCLLLIAALIGLIALLVFGSTDPGEPIETAVALLVLLWSGQRQAFVPGRRVLVRS
Ga0209058_121246123300026536SoilVTGCGCLLLIGALVGLIVLLVFGSTDPGEPIETAVALLALLWSGQRQAFVPGRHALVRARNA
Ga0209161_1002074163300026548SoilCVLLIAALVGLILFLIFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRDA
Ga0209161_1013312633300026548SoilVLLIAALVGLILFLIFGSTDPGEPIETAVALLLLLSGQRLALVPGRGVLVGSRDA
Ga0209968_105346623300027526Arabidopsis Thaliana RhizosphereVTGCGCLLLIAAIVGLIVFMIFGSTDAGEPIDTAVALLLLLLLGQRQALVPRRRVLVRPRDA
Ga0208984_113559223300027546Forest SoilVTGCGCLFLIAALVGLILFMIFGSTDPGAPIETAVALLLGVWLGQRQTLVPRRRALVGSRDT
Ga0209818_107512423300027637Agricultural SoilVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPVETAAALLLLVLLGERLSLVPRRRVLVRTRDV
Ga0209388_109805623300027655Vadose Zone SoilVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVMSLGQRLALVPGRRVLVRSGDA
Ga0208981_100911963300027669Forest SoilVTGCGCLLLIAALVGLIAFMVFGSTDPGAPIETAVALIPALWLGQRQTLVPRRRVLVRSRDA
Ga0209966_113892613300027695Arabidopsis Thaliana RhizosphereARSRVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAAALILIWLAQRETLVPRCRALVRSRDT
Ga0209998_1008660213300027717Arabidopsis Thaliana RhizosphereVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIETAAALILIWLAQRETLVPRCRALVRSRD
Ga0209180_1039424623300027846Vadose Zone SoilVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVMSLGQRLALVPGRRALVRSG
Ga0209814_1000689423300027873Populus RhizosphereVTGCGCLLLIAAIVGLIVLMIFGSTDAGEPVETAAALLLLMSLGERLSLVPRRRALVRARDA
Ga0209814_1008163223300027873Populus RhizosphereVTGCGCLLLIAALVGLIVFLIFGSTDPGEPIESAVALLLLLLLGQRQTFVPRRGLLVRARDA
Ga0209283_1006779333300027875Vadose Zone SoilVPVTGCGCLLLIAAIVGLIVFLVFGSTDPGEPIEAAAALAAASLLMERQALVPLRRALVRARRA
Ga0209853_102298833300027961Groundwater SandVTGCGCLLFIAALVGLIAVLIFGSTDPGEPIETAVALLLVLWLGQRQALVPRRRALVRSGDA
Ga0268265_1062770623300028380Switchgrass RhizosphereVTGCGCLLLIAALVGLIIFMIFGSTDSGEPIETAVALFLLLWLAQRETLVPRRRALVRSRDT
Ga0307313_1006407123300028715SoilVTGCGCVLVVAALVGLIIFMVFGSTDPGEPIETTLALLLVLWLGERQALVPRRRVLVCPRDAQQQSLAPRPRGEL
Ga0307287_1037939723300028796SoilLLLIAAIVGLIILMIFGSTDAGEPIETAAALFLLVLLGQRLSLVPRRRVLVGARHA
Ga0307302_1018603823300028814SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIESAVALFLLLWLVERETLVPRRRALVRSRDA
Ga0307296_1001978553300028819SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIESAVALFLLLWLAERKTLVPRRRALVRSRDA
Ga0307312_1008707923300028828SoilVTGCGCVLVVAALVGLIIFMVFGSTDPGEPIETALALLLVLWLGERQALVPRRRVLVCPRDAQQQSLAPRPRGEL
Ga0307278_1000734953300028878SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIESAVALFLLLWLAQRQPLVPRRRALVRSRDT
Ga0307277_1002947553300028881SoilVTGCGCLLVVAALVGLIVFMVFGSTDPGAPIETAVALLLVLWLGERQALVPRRRALVRPRDA
Ga0307277_1006782613300028881SoilLVGLIVFMVFGSTDPGAPIETAVALLLVLWLGERQALVPRRRTLVRPRDA
Ga0307308_1002236543300028884SoilVTGCGCVLVVAAIVGLIIFMVFGSTDPGEPIETALALLLVLWLGERQALVPRRRVLVCPRDAQQQSLAPRPRGEL
Ga0326597_10021785103300031965SoilVTGCGCLLLIAALVGLGVFLIFGSTDPGEPIEAAVALSLLLWLGQRLSLVPGRRVLVRSRDP
Ga0307471_10027011023300032180Hardwood Forest SoilVTGCGCLLLIAALVGLIVFMIFGSTDSGEPIESAVALFLLLWLAERESLVPLRRALIRPRDA
Ga0364924_079503_340_5283300033811SedimentVTGCGCLLLIAAIVGLIVFLIFGSTDAGEPIETAVALFLLILLGQRLALVPRRRVLVRARHA
Ga0364936_033638_633_8213300034773SedimentVTGCGCILLIAAIVGLIVFLIFGSTDAGEPIETAVALFLLILLGQRLALVPRRRLLVRVRDA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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