Metagenome / Metatranscriptome Family F065586

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065586
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	44 residues
Representative Sequence	LTTAQIMIEDGADFKGSIEIDRSAAEEAGKNVSSRAAAAGAGPKSI
Number of Associated Samples	96
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.56 %
% of genes near scaffold ends (potentially truncated)	85.83 %
% of genes from short scaffolds (< 2000 bps)	81.10 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.764 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (43.307 % of family members)
Environment Ontology (ENVO)	Unclassified (41.732 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.094 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.76% β-sheet: 0.00% Coil/Unstructured: 93.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF04519	Bactofilin	6.30
PF06884	DUF1264	3.94
PF07238	PilZ	3.15
PF00266	Aminotran_5	2.36
PF13787	HXXEE	2.36
PF01258	zf-dskA_traR	2.36
PF05973	Gp49	2.36
PF03551	PadR	1.57
PF01979	Amidohydro_1	1.57
PF05015	HigB-like_toxin	1.57
PF13744	HTH_37	1.57
PF07077	DUF1345	1.57
PF01370	Epimerase	1.57
PF00155	Aminotran_1_2	0.79
PF04542	Sigma70_r2	0.79
PF07681	DoxX	0.79
PF03544	TonB_C	0.79
PF01842	ACT	0.79
PF12686	DUF3800	0.79
PF01566	Nramp	0.79
PF04264	YceI	0.79
PF14279	HNH_5	0.79
PF00005	ABC_tran	0.79
PF01850	PIN	0.79
PF00239	Resolvase	0.79
PF01551	Peptidase_M23	0.79
PF13181	TPR_8	0.79
PF07676	PD40	0.79
PF14683	CBM-like	0.79
PF00069	Pkinase	0.79
PF00291	PALP	0.79
PF04366	Ysc84	0.79
PF13590	DUF4136	0.79
PF00398	RrnaAD	0.79
PF00072	Response_reg	0.79
PF06245	DUF1015	0.79
PF01329	Pterin_4a	0.79
PF05016	ParE_toxin	0.79
PF13376	OmdA	0.79
PF05495	zf-CHY	0.79
PF05598	DUF772	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	6.30
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.15
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	2.36
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	2.36
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	2.36
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.57
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.57
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.57
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	1.57
COG4291	Uncharacterized membrane protein	Function unknown [S]	1.57
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.79
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.79
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.79
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.79
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.79
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.79
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.79
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.79
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.79
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.79
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.79
COG4198	Uncharacterized conserved protein, DUF1015 family	Function unknown [S]	0.79
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.79
COG4357	Uncharacterized conserved protein, contains Zn-finger domain of CHY type	Function unknown [S]	0.79
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.76 %
Unclassified	root	N/A	10.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.76 %
Unclassified	root	N/A	10.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.76 %
Unclassified	root	N/A	10.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.93 %
Unclassified	root	N/A	10.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	36.22 %
Unclassified	root	N/A	10.24 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.22 %
Unclassified	root	N/A	10.24 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.36 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.79 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.22 %
Unclassified	root	N/A	10.24 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.57 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.79 %
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	0.79 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.22 %
Unclassified	root	N/A	10.24 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.57 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.79 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.79 %
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.22 %
Unclassified	root	N/A	10.24 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.57 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.79 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.79 %
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12584849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1159	Open in IMG/M
3300000955\|JGI1027J12803_107280317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1854	Open in IMG/M
3300002914\|JGI25617J43924_10029531	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300003351\|JGI26346J50198_1001111	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300004091\|Ga0062387_101752980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300004473\|Ga0068919_1297412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300005446\|Ga0066686_10696056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300005540\|Ga0066697_10437244	All Organisms → cellular organisms → Bacteria → Acidobacteria	755	Open in IMG/M
3300005554\|Ga0066661_10693032	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300005560\|Ga0066670_10270391	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300005598\|Ga0066706_10480341	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300006086\|Ga0075019_10837394	Not Available	588	Open in IMG/M
3300006796\|Ga0066665_11026647	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300006800\|Ga0066660_10907971	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300006954\|Ga0079219_10243607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1063	Open in IMG/M
3300007255\|Ga0099791_10071431	All Organisms → cellular organisms → Bacteria → Acidobacteria	1573	Open in IMG/M
3300007255\|Ga0099791_10673560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300007265\|Ga0099794_10046731	All Organisms → cellular organisms → Bacteria	2074	Open in IMG/M
3300007265\|Ga0099794_10575946	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300009038\|Ga0099829_10031761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3770	Open in IMG/M
3300009038\|Ga0099829_10945058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300009038\|Ga0099829_11217652	Not Available	623	Open in IMG/M
3300009088\|Ga0099830_10059372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2730	Open in IMG/M
3300009088\|Ga0099830_10083834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2344	Open in IMG/M
3300009088\|Ga0099830_10791522	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300009088\|Ga0099830_10834021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_34	761	Open in IMG/M
3300009522\|Ga0116218_1241619	Not Available	812	Open in IMG/M
3300010322\|Ga0134084_10004066	All Organisms → cellular organisms → Bacteria → Acidobacteria	3358	Open in IMG/M
3300010335\|Ga0134063_10065888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1604	Open in IMG/M
3300010336\|Ga0134071_10742172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300010360\|Ga0126372_11157268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300010379\|Ga0136449_101920337	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300010379\|Ga0136449_102039482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300011120\|Ga0150983_13448073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	940	Open in IMG/M
3300011120\|Ga0150983_14102267	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300011269\|Ga0137392_10154745	All Organisms → cellular organisms → Bacteria → Acidobacteria	1853	Open in IMG/M
3300011270\|Ga0137391_11087621	Not Available	647	Open in IMG/M
3300011270\|Ga0137391_11455045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300011271\|Ga0137393_10304706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1357	Open in IMG/M
3300011271\|Ga0137393_10352527	All Organisms → cellular organisms → Bacteria → Acidobacteria	1257	Open in IMG/M
3300011271\|Ga0137393_11743367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300012096\|Ga0137389_11222336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300012189\|Ga0137388_11983828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300012198\|Ga0137364_10050380	All Organisms → cellular organisms → Bacteria	2770	Open in IMG/M
3300012203\|Ga0137399_11219389	Not Available	633	Open in IMG/M
3300012205\|Ga0137362_10112188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2305	Open in IMG/M
3300012205\|Ga0137362_10290538	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300012205\|Ga0137362_11099788	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300012357\|Ga0137384_10026962	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4708	Open in IMG/M
3300012357\|Ga0137384_11532268	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300012357\|Ga0137384_11538326	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300012363\|Ga0137390_10076601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3282	Open in IMG/M
3300012363\|Ga0137390_11700461	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300012582\|Ga0137358_10206931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300012683\|Ga0137398_10073309	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M
3300012683\|Ga0137398_11137911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300012685\|Ga0137397_10391968	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300012918\|Ga0137396_10121074	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300012922\|Ga0137394_10613178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300012922\|Ga0137394_11505507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300012924\|Ga0137413_10430745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300012925\|Ga0137419_10059190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2506	Open in IMG/M
3300012925\|Ga0137419_10266348	All Organisms → cellular organisms → Bacteria → Acidobacteria	1297	Open in IMG/M
3300012927\|Ga0137416_10324724	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300012927\|Ga0137416_11049554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300012929\|Ga0137404_10109034	All Organisms → cellular organisms → Bacteria → Acidobacteria	2245	Open in IMG/M
3300012930\|Ga0137407_12414837	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300012944\|Ga0137410_11880741	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012977\|Ga0134087_10300366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300014158\|Ga0181521_10189091	All Organisms → cellular organisms → Bacteria → Acidobacteria	1139	Open in IMG/M
3300015054\|Ga0137420_1373549	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300015241\|Ga0137418_10000021	All Organisms → cellular organisms → Bacteria → Acidobacteria	102311	Open in IMG/M
3300015242\|Ga0137412_10966683	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300015264\|Ga0137403_10022210	All Organisms → cellular organisms → Bacteria → Acidobacteria	6795	Open in IMG/M
3300015264\|Ga0137403_10229462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1776	Open in IMG/M
3300015264\|Ga0137403_10680693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300015357\|Ga0134072_10417084	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300017656\|Ga0134112_10489009	Not Available	520	Open in IMG/M
3300017823\|Ga0187818_10211386	All Organisms → cellular organisms → Bacteria → Acidobacteria	847	Open in IMG/M
3300017933\|Ga0187801_10025295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2050	Open in IMG/M
3300017933\|Ga0187801_10029368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1921	Open in IMG/M
3300017934\|Ga0187803_10277362	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300017973\|Ga0187780_11027728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300017995\|Ga0187816_10050384	Not Available	1738	Open in IMG/M
3300017995\|Ga0187816_10187199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300017995\|Ga0187816_10248189	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300018006\|Ga0187804_10268428	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300018431\|Ga0066655_10005530	All Organisms → cellular organisms → Bacteria	5143	Open in IMG/M
3300018482\|Ga0066669_10688263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300020150\|Ga0187768_1032436	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300020579\|Ga0210407_10102111	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2179	Open in IMG/M
3300021088\|Ga0210404_10011450	All Organisms → cellular organisms → Bacteria → Acidobacteria	3650	Open in IMG/M
3300021180\|Ga0210396_11726987	Not Available	508	Open in IMG/M
3300021181\|Ga0210388_11082711	Not Available	684	Open in IMG/M
3300021401\|Ga0210393_10155549	All Organisms → cellular organisms → Bacteria	1839	Open in IMG/M
3300021401\|Ga0210393_10297072	All Organisms → cellular organisms → Bacteria → Acidobacteria	1312	Open in IMG/M
3300021420\|Ga0210394_11628790	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300021474\|Ga0210390_11001615	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300021475\|Ga0210392_10212761	All Organisms → cellular organisms → Bacteria → Acidobacteria	1355	Open in IMG/M
3300021559\|Ga0210409_11233423	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300021559\|Ga0210409_11669330	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300022724\|Ga0242665_10163768	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300025916\|Ga0207663_10640010	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300026330\|Ga0209473_1253984	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300026377\|Ga0257171_1002816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2574	Open in IMG/M
3300026552\|Ga0209577_10430903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300026555\|Ga0179593_1205335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2412	Open in IMG/M
3300027655\|Ga0209388_1187861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300027748\|Ga0209689_1064223	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300027783\|Ga0209448_10164904	Not Available	739	Open in IMG/M
3300027812\|Ga0209656_10452617	Not Available	567	Open in IMG/M
3300027846\|Ga0209180_10402928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	775	Open in IMG/M
3300027862\|Ga0209701_10147973	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300027862\|Ga0209701_10479343	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300031231\|Ga0170824_109042592	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300031718\|Ga0307474_11505658	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	529	Open in IMG/M
3300031720\|Ga0307469_12075370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300031736\|Ga0318501_10444984	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300031748\|Ga0318492_10266751	Not Available	887	Open in IMG/M
3300031962\|Ga0307479_10357821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1443	Open in IMG/M
3300032001\|Ga0306922_10279857	All Organisms → cellular organisms → Bacteria → Acidobacteria	1792	Open in IMG/M
3300032180\|Ga0307471_100056261	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3285	Open in IMG/M
3300032180\|Ga0307471_100158232	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300032261\|Ga0306920_102464776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300032261\|Ga0306920_103818968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300032782\|Ga0335082_11025429	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.98%
Aquatic	Environmental → Aquatic	11.02%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.98%
Freshwater	Environmental → Aquatic → Freshwater	10.24%
Sediment	Environmental → Aquatic → Sediment	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.15%
Loam	Environmental → Terrestrial → Soil → Loam	2.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.30%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	43.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.30%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.15%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.79%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004473	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_125848492	3300000789	Soil	IEDGADFKGSIEIDRSAAEDAAKNVASLAAAAGAGPKSI*
JGI1027J12803_1072803175	3300000955	Soil	QIMIEDGADFKGSIEIDRSAAEDAAKNVASLAAAAGAGPKSI*
JGI25617J43924_100295311	3300002914	Grasslands Soil	TAQIMIEDGAGFKGTIEIDRSVAEQAEKNVASRAAAAGAV*
JGI26346J50198_10011113	3300003351	Bog Forest Soil	AQIMIEDGADFKGSIEIDRSVAREADNTSSSRSAAAGAGPKSN*
Ga0062387_1017529801	3300004091	Bog Forest Soil	KGGSVNGNLTTAQILIEDGADFRGSIEIERGVEKEAHKNVSSRAASAAAGH*
Ga0068919_12974122	3300004473	Peatlands Soil	NLTTAQIMIEDGAGFKGTIEIDRSVAEQAEKNVASRAAAAGAGSKSI*
Ga0066686_106960561	3300005446	Soil	GLATAQVMIDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR*
Ga0066697_104372442	3300005540	Soil	MIDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR*
Ga0066661_106930321	3300005554	Soil	IDDGADFKGSIEIDKSATEETDKDTLSRKASAGALS*
Ga0066670_102703911	3300005560	Soil	LATAQVMIDDGADLKGAIEIDRSPTKEADKKVLSRAASDGAMR*
Ga0066706_104803413	3300005598	Soil	LRAAQVMIDDGSDFKGSIEIDQSATEETDKNTLSRKASAGAVS*
Ga0075019_108373941	3300006086	Watersheds	AGFKGTIEIDRSVAEQAEKNVASRAAAAGAGSKSI*
Ga0066665_110266472	3300006796	Soil	IGNLRAAQVMIDDGSDFKGSIEIDQSATEETDKDTLSRKASAGALS*
Ga0066660_109079711	3300006800	Soil	LATAQVMIDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR*
Ga0079219_102436073	3300006954	Agricultural Soil	MIEDGADFKGSIEIDRSASEQGEKNVASRAAAAGAGSKGI*
Ga0099791_100714313	3300007255	Vadose Zone Soil	TAQIMIEDGAGFKGTIEIDRSVAEQAEKNVASRAAAAGAGSKGI*
Ga0099791_106735601	3300007255	Vadose Zone Soil	DGADFKGSIEIDRSVEREADQNVSSRAASAAAGAGPKSI*
Ga0099794_100467311	3300007265	Vadose Zone Soil	MTAQIMIEDGADFKGSIEIDRSAPKETDQNVSSRAASASAGAPPKII*
Ga0099794_105759461	3300007265	Vadose Zone Soil	MTAQIMIEDGADFKGSIEIDRSAPKETDQNVSSRAASASAGTPPKSI*
Ga0099829_100317614	3300009038	Vadose Zone Soil	MIEDGADFKGSIEIDRSAAEEAGKNVSSRAAAAGAGPKSI*
Ga0099829_109450581	3300009038	Vadose Zone Soil	KGSIEIDRSAVKEPDQNVSARAAAASAAAGAGPKSI*
Ga0099829_112176522	3300009038	Vadose Zone Soil	LTTAQIMIEDGADFKGSIEIDRSAAEEADKNVSSRAAGAGAISI*
Ga0099830_100593725	3300009088	Vadose Zone Soil	DFKGSIEIDRSAAEEADKNALSRAASAGAGAKSI*
Ga0099830_100838341	3300009088	Vadose Zone Soil	IGNLTTAQIMIEDGADFKGSIEIDRSAAEEAGKNVSSRAAAAGAGPKSI*
Ga0099830_107915223	3300009088	Vadose Zone Soil	TTAQIMIEDGADFKGSIEIDRSAAKEADKNVSSRAASASAAAGAGPKSI*
Ga0099830_108340212	3300009088	Vadose Zone Soil	TTAQIMIEDGADFKGSIEIDRSATEGAEKSVASRAAAAGAGSKGSD*
Ga0116218_12416192	3300009522	Peatlands Soil	ANFKGSIEIDKSPAKESDKNVSLRAASAGAGSKSI*
Ga0134084_100040661	3300010322	Grasslands Soil	QVMIDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR*
Ga0134063_100658883	3300010335	Grasslands Soil	QAMIDDGADFKGSIEIDKSATEETDKDTLSRKASAGALS*
Ga0134071_107421722	3300010336	Grasslands Soil	GRIEIRKDGAIIGNLRMAQILIEDGADFKGSIGIDRSATEQAEKNVASRAAAAGAGSKGI
Ga0126372_111572682	3300010360	Tropical Forest Soil	DGADFKGSIEIDRSPTEEADKKVHSHVASDGATS*
Ga0136449_1019203372	3300010379	Peatlands Soil	IMIEDGANFKGSIEIDRSAAKEADKKVSTRAASA*
Ga0136449_1020394822	3300010379	Peatlands Soil	LTTAQIMIEDGADFKGSIEIDKSPAKESDKNVSSRAASAGAGSKSI*
Ga0150983_134480731	3300011120	Forest Soil	NLTTAQIMIEDGADFKGSIEIDRSATEQAEKSVASRAAAAGAGSKSI*
Ga0150983_141022671	3300011120	Forest Soil	IVGNLTTAQIMIEDGADFKGSIEIDRSAAEEAGKNVSSRAAAAGAGSKSI*
Ga0137392_101547451	3300011269	Vadose Zone Soil	KGSIEIDRGAEREADKNVSSRAASASAAAGAGPKSI*
Ga0137391_110876211	3300011270	Vadose Zone Soil	IEDGAGFKGTIEIDRSVAEQAEKNVASRAAAAGAGSKSSD*
Ga0137391_114550451	3300011270	Vadose Zone Soil	LTTAQIMIEDGADFKGSIEIDRSATEGAEKSGASRAAAAGAGSKSSD*
Ga0137393_103047063	3300011271	Vadose Zone Soil	GNLTTAQIMIEDGADFKGSIEIDRSATEGAEKSGASRAAAAGAGSKSSD*
Ga0137393_103525273	3300011271	Vadose Zone Soil	NLTTAQIMIEDGAGFKGTIEIDRSVAEQAEKNVALRAAAAGAGSKGV*
Ga0137393_117433672	3300011271	Vadose Zone Soil	GAIIGNLTTAQIMIEDGADFKGSIEIERGAAEQAEMNVASRAAAAGAGSKSI*
Ga0137389_112223361	3300012096	Vadose Zone Soil	IGNLTTAQIMIEDGADFKGSIEIDRSAAEEGDKNVSSRAAAAGAGAKSI*
Ga0137388_119838282	3300012189	Vadose Zone Soil	IIGNLTTAQIMIEDGADFKGSIEIDRSATEQVEKNVASRAAAAGAGSKGGD*
Ga0137364_100503806	3300012198	Vadose Zone Soil	MIDDGADFKGSIEIDKSAEEETDKNTLSRKASAGAVS*
Ga0137399_112193891	3300012203	Vadose Zone Soil	QIMIEDGADFKGSIEIDRSAAEEADKNVSSRAAAAAGPRSI*
Ga0137362_101121881	3300012205	Vadose Zone Soil	MIEDGADFKGSIEIDRSATEEAGKNVSSRAAAAGAGPKST*
Ga0137362_102905381	3300012205	Vadose Zone Soil	NLTTAQIMIEDGADFKGSIEIDRSATEQAEKNVASRGAAAGAGSKSV*
Ga0137362_110997881	3300012205	Vadose Zone Soil	GNLTTAQIMIEDGADFKGSIEIDRSAAEEADKNILSRVAGAGAKSI*
Ga0137384_100269622	3300012357	Vadose Zone Soil	MIDDGADFKGSNEIDRSPTKEADKKVLSRAASDGAMR*
Ga0137384_115322682	3300012357	Vadose Zone Soil	AIIGNLTTAQIMIEDGADFKGSIEIDRSATEQAEKNVASRAAAAGAGSKSI*
Ga0137384_115383261	3300012357	Vadose Zone Soil	GNLTTAQIMIEDGADFKGSIEIDRSATEQAEKNVASRAAAAGAGSKGI*
Ga0137390_100766016	3300012363	Vadose Zone Soil	TTAQIMIEDGADFKGSIEIDRGSEREAGSSRAVSAAAGAGPKGI*
Ga0137390_117004611	3300012363	Vadose Zone Soil	DGADFKGSIEIDRSAAEEADKNALSRAASAGAGAKSI*
Ga0137358_102069311	3300012582	Vadose Zone Soil	ADFKGSIEIDRGAAEEADKNVSSRAAAAGAGAKSI*
Ga0137398_100733093	3300012683	Vadose Zone Soil	AQIMIEDGAGFKGTIEIDRSVAEQAEKNVAARVAAAGAGSKSV*
Ga0137398_111379112	3300012683	Vadose Zone Soil	AQIMIEDGAGFKGTIEIDRSVAEQAEKNVAARVAAAGAGSKGI*
Ga0137397_103919681	3300012685	Vadose Zone Soil	QIMIEDGADFKGSIEIDRSAAEEADKNVLSRAAGAGTKSI*
Ga0137396_101210741	3300012918	Vadose Zone Soil	AQIMIEDGAGFKGTIEIDRSVAEQAEKNVAARVAAAGAGSKSI*
Ga0137394_106131781	3300012922	Vadose Zone Soil	MIEDGADFKGSIEIDRSAAEEADKNVSSRAAAAGAGPKSI*
Ga0137394_115055072	3300012922	Vadose Zone Soil	TTAQIMIEDGADFKGSIEIDRSVEREADQNVSSRAASAAAGAGPKSI*
Ga0137413_104307452	3300012924	Vadose Zone Soil	AQIMIEDGADFKGSIEIDRGEAKVADKNVSSRAAAAGAEPKGV*
Ga0137419_100591905	3300012925	Vadose Zone Soil	IGNLTTAQIMIEDGADFKGSIEIDRSADNDADKNVSSRAVAAGAGPKSI*
Ga0137419_102663482	3300012925	Vadose Zone Soil	LTTAQIMIEDGADFKGSIEIDRSAAQEAGQNLSSRAAAAGSGTKST*
Ga0137416_103247244	3300012927	Vadose Zone Soil	SVVGNLTTAQIMIEDGADFKGSIEIDRSAVKEPDQNVSARAAAASAGAAPKSI*
Ga0137416_110495542	3300012927	Vadose Zone Soil	GFKGTIEIDRSVAEQAEKNVAARVAAAGAGSKSI*
Ga0137404_101090343	3300012929	Vadose Zone Soil	LTTAQITIEDGADFKGSIEIERGAAEQAEMNVASRAAAAGAGSKSI*
Ga0137407_124148372	3300012930	Vadose Zone Soil	AQIMIEDGADFKGSIEIDRSAAEEADKNALSRAAGAGAKSI*
Ga0137410_118807411	3300012944	Vadose Zone Soil	IMIEDGADFKGSIEIDRSAAEEADKNVLSRAAGAGTKSI*
Ga0134087_103003661	3300012977	Grasslands Soil	IDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR*
Ga0181521_101890911	3300014158	Bog	IVGNLTTAQIMIEDGADFKGTIEIDRGTPKEADKTAPPRAAAAAAGSGSGSGTKSI*
Ga0137420_13735492	3300015054	Vadose Zone Soil	AQIMIEDGADFKGSIEIDRSAVKEPDQNVSARAAAASAGAALKSI*
Ga0137418_100000211	3300015241	Vadose Zone Soil	GAGFKGTIEIDRSVAEQAEKNVAARAAAAGAGSNSI*
Ga0137412_109666832	3300015242	Vadose Zone Soil	NLTTAQIMIEDGADFKGSIEIDRSATEQAEKNVASRAAAAGVGSKSI*
Ga0137403_1002221011	3300015264	Vadose Zone Soil	VIGNLTTAQIMIEDGADFKGSIEIDRSAAEEADKNVSSRAAAAGAGPKSI*
Ga0137403_102294623	3300015264	Vadose Zone Soil	LTTAQIMIEDGADFKGSIEIDRGAAEQAEMNVASRAAAAGAGSKSI*
Ga0137403_106806933	3300015264	Vadose Zone Soil	VIGNLTTAQIMIEDGADFKGSIEIDRSAAEEADKNVSSRVAAAGAGPKSI*
Ga0134072_104170842	3300015357	Grasslands Soil	GNLRTAQVMIDDGADFKGSIEIDQSATEETDKNTLSRKASAGAVS*
Ga0134112_104890092	3300017656	Grasslands Soil	VIDEGAVFNGTVESEGSVAEQAEKNVASRAAAAGAGSKGV
Ga0187818_102113862	3300017823	Freshwater Sediment	LTTAQIMIEDGANFKGSIEIEMSATNEADKNVSSRAAAAGAGPKSI
Ga0187801_100252953	3300017933	Freshwater Sediment	MIEEGADFKGTIEIDRRTTKEADKNVSSGVAAAAAGAGAGSKSI
Ga0187801_100293686	3300017933	Freshwater Sediment	GADFKGTIEIDRSTAKEADKNVSVRAASAAAGVGPKST
Ga0187803_102773621	3300017934	Freshwater Sediment	GNLTTAQIIIEDGADFKGSIEIDRGAAKEADASVSSRAASAASGAD
Ga0187780_110277281	3300017973	Tropical Peatland	SVHGNLTTAQIMIEEGADFKGTIEIDRGTTKEADKNVSARVAAAGAGAGPKST
Ga0187816_100503843	3300017995	Freshwater Sediment	GADFKGSIEIDRSEAKEAEKNRSSRAAAAGAVPKSS
Ga0187816_101871991	3300017995	Freshwater Sediment	QIMIEEGADFKGTIEIDRSTAKEADKNVSVRAASAAAGVGPKST
Ga0187816_102481891	3300017995	Freshwater Sediment	TTAQIMIEDGADFRGSIEIDRSATKEADKNISSGAASAAAGRG
Ga0187804_102684281	3300018006	Freshwater Sediment	IEDGADFKGSIEIDRGAAKEADASVSSRAASAASGAD
Ga0066655_100055305	3300018431	Grasslands Soil	MIDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR
Ga0066669_106882631	3300018482	Grasslands Soil	LATAQVMIDDGADFKGSIEIDRSPTKEADKKVLSRAASDGAMR
Ga0182028_12438082	3300019788	Fen	EDGADFKGTIEIDRSAPKEADKNVPARAAAAAAGAGAGATPKSI
Ga0187768_10324361	3300020150	Tropical Peatland	KKGGSVHGNLTTAQIMIEEGADFKGTIEIDRGTTKEADKSVSARVAAAGAGAGPKST
Ga0210407_101021114	3300020579	Soil	ADFKGSIEIDRGAPEQADKNVSSRTAAAGAGPKSI
Ga0210404_100114501	3300021088	Soil	LTTAQIMIEDGADFKGSIEIDRGAPEEAGKNAGSRAAVAGAGTKSA
Ga0210396_117269871	3300021180	Soil	ADFKGSIEIDRGEAKVADKNVSSRAAAAGAGPKGV
Ga0210388_110827111	3300021181	Soil	MIEDGADFKGSIEIDRGAAEEANKGVASRAAAAGAGTKSA
Ga0210393_101555491	3300021401	Soil	IGNLTTAQIMIEDGADFKGSIEIDKGEAKVADKNVSSRAAAGAGPKSV
Ga0210393_102970721	3300021401	Soil	TTAQIMIEDGADFKGSIEIDRSEAKIADQNVSSRAAAAGSGPKSI
Ga0210394_116287901	3300021420	Soil	GNLTTAQIMIEDGADFKGSIEIDKGEAKVADKNVSSRAAAGAGPKSV
Ga0210390_110016151	3300021474	Soil	GSVNGNLTTAQILIEDGADFRGSIEIDRGAEKEADKNVSSRAAAAGSR
Ga0210392_102127611	3300021475	Soil	GNLTTAQIMIEDGADFKGSIEIDRSEAKVADQNVSSRAAAAGAGPKSI
Ga0210409_112334232	3300021559	Soil	QIMIEDGAGFKGTIEIDRSVAVAEQAEKNVASRAAAAGAGAKSI
Ga0210409_116693302	3300021559	Soil	IGDLTTAQIMIEDGADFKGSIEIDRRATKEAENDVSSRAASVGAS
Ga0242665_101637681	3300022724	Soil	LTTARIMIEDGADFKGSIEIDRSATKEADKNVSSLAAAGAGPNGN
Ga0207663_106400101	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MDGDLTTAQIMIEDGANFKGSIQIEKSAEKEADKSVFPPAA
Ga0209473_12539841	3300026330	Soil	IGNLRTAQVMIDDGADFRGSIEIDKSATEETDKETLSRKASAGALS
Ga0257171_10028165	3300026377	Soil	QIMIEDGADFKGSIEIDRSAAEEADKNALSRAASAGAGAKSI
Ga0209577_104309031	3300026552	Soil	MIDDGADFRGSIEIDKSATEETDKDTLSRKASAGALS
Ga0179593_12053353	3300026555	Vadose Zone Soil	MIEDGADFKGSIEIDRSATERAEKNVASRAAAGGGSKSI
Ga0209388_11878611	3300027655	Vadose Zone Soil	QIMIEDGAGFKGTIEIDRSVAEQAEKNVASRAAAAGAGSKGI
Ga0209689_10642231	3300027748	Soil	SIEPLRTAQVMIDEGADFKGSIEIDQSATEETDKNTLSRKASAGAVS
Ga0209448_101649041	3300027783	Bog Forest Soil	KGGSVNGNLTTAQILIEDGADFRGSIEIDRGAEKEADKDVSSRAAAAAGSR
Ga0209656_104526172	3300027812	Bog Forest Soil	QILIEDGADFRGSIEIDRGAEKEIDRSASSRAAGAGSR
Ga0209180_104029281	3300027846	Vadose Zone Soil	LTTAQIMIEDGADFKGSIEIDRSAAEEAGKNVSSRAAAAGAGPKSI
Ga0209701_101479731	3300027862	Vadose Zone Soil	AIIGNLTTAQIMIEDGAGFKGTIEIDRSVAEQAEKNVASRAAAAGAV
Ga0209701_104793431	3300027862	Vadose Zone Soil	AQIMIEDGADFKGSIEIDRSAAKEADKNVSSRAASASAAAGAGPKSI
Ga0170824_1090425925	3300031231	Forest Soil	VIGNLTTAQIMIEDGADFKGTIEIDRSPTKDADKSISSRAASAGAGQV
Ga0307474_115056582	3300031718	Hardwood Forest Soil	GNLTTAQIMIEDGADFKGSIEIDRSEAKVSDQNVSSRAAAAGAGTKTI
Ga0307469_120753702	3300031720	Hardwood Forest Soil	VNGDLTTAQIMIEDGADFKGSIEIDRSAEREADKNVASRAASA
Ga0318501_104449842	3300031736	Soil	GGSVTGDLRTAQVLIDDGADFKGSIEIDKSETEETDKNTISRKASAGAAS
Ga0318492_102667512	3300031748	Soil	VTGDLRTAQVLIDDGADFKGSIEIDKSKTEETDKNTVSRKASAGAAS
Ga0307479_103578211	3300031962	Hardwood Forest Soil	NLTTAQIMIEDGADFKGSIEIDRSATEEAAKNVSSRAAAAGAGPQTI
Ga0306922_102798571	3300032001	Soil	AQVMIDDGADFKGSIEIDRSPTEEADKKVHSHAASDGATG
Ga0307471_1000562612	3300032180	Hardwood Forest Soil	MIDDGADFKGSIEIDRSPTKEADTKVLSRAASDGAMR
Ga0307471_1001582324	3300032180	Hardwood Forest Soil	IMIEDGADFKGSIEIDRSATEQAEKNVASRAAVAGAGSKSI
Ga0306920_1024647762	3300032261	Soil	GGSVIGDLRTAQVMIDDGADFKGSIEIDRSPTEEADKKVHSHVASDGATG
Ga0306920_1038189682	3300032261	Soil	GGSVIGDLRTAQVMIDDGADFKGSIEIDRSPTEEADKKVHSHAASDGATG
Ga0335082_110254291	3300032782	Soil	KKGGSVNGNLRTAQILIEDGADFRGSIEIDRGAEKEADKNISSRAAAAAGSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065586

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences