Metagenome Family F065608

Basic Information
Family ID	F065608
Family Type	Metagenome
Number of Sequences	127
Average Sequence Length	48 residues
Representative Sequence	MRRYLWTLVGLTLAAPPLKAQGLRDKISQLFIFADGKDPLFL
Number of Associated Samples	94
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.79 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.213 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.071 % of family members)
Environment Ontology (ENVO)	Unclassified (59.843 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.630 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 41.43% β-sheet: 0.00% Coil/Unstructured: 58.57%
Feature Viewer

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00156	Pribosyltran	17.32
PF02633	Creatininase	16.54
PF14559	TPR_19	5.51
PF13181	TPR_8	4.72
PF00266	Aminotran_5	3.94
PF02729	OTCace_N	2.36
PF03704	BTAD	2.36
PF00326	Peptidase_S9	2.36
PF03358	FMN_red	2.36
PF13432	TPR_16	1.57
PF13414	TPR_11	1.57
PF00497	SBP_bac_3	0.79
PF01569	PAP2	0.79
PF12890	DHOase	0.79
PF13594	Obsolete Pfam Family	0.79
PF00005	ABC_tran	0.79
PF00722	Glyco_hydro_16	0.79
PF07969	Amidohydro_3	0.79
PF07719	TPR_2	0.79
PF01649	Ribosomal_S20p	0.79
PF00515	TPR_1	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	16.54
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	2.36
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	2.36
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	0.79
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.79

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
All Organisms	root	All Organisms	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
cellular organisms	root	All Organisms → cellular organisms	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.21 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.79 %

Visualization

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Scaffold	Taxonomy	Length	IMG/M Link
3300026301\|Ga0209238_1000207	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	19604	Open in IMG/M

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.43%
Host-Associated	Host-Associated	1.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.06%
Aquatic	Environmental → Aquatic	2.36%
Plants	Host-Associated → Plants	1.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.06%
Sediment	Environmental → Aquatic → Sediment	1.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.57%
Freshwater	Environmental → Aquatic → Freshwater	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.70%
Loam	Environmental → Terrestrial → Soil → Loam	2.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	46.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	18.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.57%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10236931	3300002557	Grasslands Soil	MRRYLWSLVSLALAASPGPLLAQGLREKIAELFIFTAGKDPLFLGG
JGI25383J37093_101160611	3300002560	Grasslands Soil	MRRYLCSLLGLTLAATSLDAQGLRDKISDLFIFGAGQDPLFLS
JGI25382J37095_102641061	3300002562	Grasslands Soil	MRRCIWSLVGLTVAATSLGAQGLRDRISELFIFTAGKDPLFLGGTAGSDSATALHADHF
JGI25382J43887_102969151	3300002908	Grasslands Soil	MRRFSWSLVSFALVLTPTLLPAQGGGLRDKISQLFIFTNGKDPLFLGGTA
JGI25386J43895_100152042	3300002912	Grasslands Soil	MRCWLWSFLALALSTTALNAQGLRDKISELFIFTAGQDPLFLGGTAGSDSATALHADHFI
Ga0066674_103421911	3300005166	Soil	MRRYLWSLVGLTLAVSPLYAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALH
Ga0066690_102540081	3300005177	Soil	MQRTWWTFLSLALAAAPLPAQGGGGLRDRISQLFIFSSGKDPLF
Ga0066688_105657671	3300005178	Soil	MRRYVWSLVVLTSIATSLDAQGLRDKISELFIFTAGQDPL
Ga0066684_102728832	3300005179	Soil	MRRYVWSLVVLTSIATSLDAQGLRDKISELFIFTAGQDPLFLGGTAGSDSAT
Ga0066685_101288913	3300005180	Soil	MQRYLWSLVGLTLAASPLDAQGLQDKISQLFIFADGKDPLFLGGTAGSDSATALHADHFV
Ga0066689_100249703	3300005447	Soil	MRRYVWSLVGLTLVATSLNAQGLRDKLSELFIFTAGQDPL
Ga0066682_105052061	3300005450	Soil	MQRIWWSLVFLALVGTPLPAQGLREKISQLFIFSAGKDPLFL
Ga0070707_1005606691	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRRYLWSLVGLTLVATSLNAQGLRDKLSELFIFTAGQDPLFLGGTAGS
Ga0070699_1001267191	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRPYLWSLLGLTLIATQLSAQGLRDKISQLFIFADGKDPLFLGGTAGSDSAT
Ga0066701_101499043	3300005552	Soil	MRRLLWSLVALALTATALDAQGLRDKISQLFIFTAGQDPLFLGGTAGSDSATAL
Ga0066661_100194631	3300005554	Soil	MRRYLLTLVGLTLIATSLNAQGLRDKLSELFIFTAGQDPLFLGGTAGSDSATAL
Ga0066661_100588211	3300005554	Soil	MRRYVWSLVGLTLVATSLNAQGLRDKLSELFIFTAGQDPLFLGGTAGSDSATAL
Ga0066692_107667761	3300005555	Soil	MRRLVWSAVGLVLVTSSLAAQGLRDKISELFIFSAGKDPL
Ga0066704_110581091	3300005557	Soil	MQRTLWALLSLALAAAPLPAQGAGGLRDKISQLFIFSSG
Ga0066698_108122512	3300005558	Soil	MRRYLWTLVGLTLAAPPLKAQGLRDKISQLFIFADGKDPLFL
Ga0066700_105073322	3300005559	Soil	MRRCLCSLVGLTLVATALEAQGLRDKISDLFIFGAGQDPLFLSG
Ga0066700_110101201	3300005559	Soil	MQRTWWTFLSLALAAAPLPAQGGGGLRDRISQLFIFSSGKDPLFLGGTAGSDS
Ga0066703_102049383	3300005568	Soil	MRHYLWSLVALTLAATSLDAQGLRDKISDLFIFGAGQDP
Ga0066708_109842451	3300005576	Soil	MRHTLWALVSLALAVTPLPAQGSGGLRDKISQLFIFTEGKDPLFLGGTAGSDSATALHADHFVP
Ga0066706_100983272	3300005598	Soil	MRCWLWSFLALALSTTALNAQGLRDKISELFIFTAGQDP
Ga0066651_103438283	3300006031	Soil	MQRIWWSLVFLALVGTPLPAQGLREKISQLFIFSAGKDPLFLGGTAGSDSA
Ga0066652_1003354552	3300006046	Soil	MRRYLWTLVGLTLVAPALHAQGLRDKISQLFIFADGKDP
Ga0066652_1014298352	3300006046	Soil	MRRYLWSLVGLILAASPLHAQGLRDKISQLFIFADGK
Ga0066658_103159002	3300006794	Soil	MQRTWWTFLSLALAAAPLPAQGGGGLRDRISQLFIFSSG
Ga0066659_105736681	3300006797	Soil	MRRYLWSLVLIVLAARPLPAQGLRDKISQLFIFANGKDPLFLG
Ga0066660_105594841	3300006800	Soil	MRRCWSCLVGLTLAAASLQAQGLRDKISELFIFTAGQDPLFLGGTAGSDSATALHADHF
Ga0066660_114032182	3300006800	Soil	MRHHLWSLVVLLLAAAPLDAQSLRDKIAELFIFTAGQDPLFLGGTAGSDSAT
Ga0079220_112617991	3300006806	Agricultural Soil	MRRYLWCLVGVLLATTPLHAQGLREKIAELFIFTAGQDPLFR
Ga0075431_1002659781	3300006847	Populus Rhizosphere	MRRALLSLAVLFLAAPPLPAQSLREEFSQLFIFGEGEDPLFLGGTGDPN
Ga0075425_1028007312	3300006854	Populus Rhizosphere	MRRYLWSLLGLTLIATPLRAQGLRDKISQLFIFADGKDPLFLGGTAGSDSAT
Ga0099791_102356152	3300007255	Vadose Zone Soil	LTSNDTPRLFEAMRRYVWSLLGLALAAAPLAGQGLRDKISQLFIFADGKDPLFLGGTAGSDSAT
Ga0099793_101636022	3300007258	Vadose Zone Soil	MRRYLWSLVGLTLAVSSLEAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATA
Ga0099794_103768982	3300007265	Vadose Zone Soil	MRRSLWCLVTLALAAAPLSAQGGGLRDKISQLFIFTNGKDPLFLGG
Ga0066710_1002386313	3300009012	Grasslands Soil	MRRSLWCLVSLALAAIPLRAQGGGLREKISELFIFTAGKDPLFLGGTAGSDSATALHAD
Ga0066710_1008222693	3300009012	Grasslands Soil	MRRFLWCLVSLALAAIPLPAQGGGLREKISELFIFTAGKDPLFLGGTAGSDSATALHAD
Ga0099828_109740752	3300009089	Vadose Zone Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGKDPLFLGGT
Ga0099827_100562462	3300009090	Vadose Zone Soil	LTDLAAPRLFEAMRRYLWSLLGLALAAAPLDGQGLRDKISQLFIFADGKDPLFLGGTAGS
Ga0099827_106115991	3300009090	Vadose Zone Soil	MRRTLWSLLSLALVVTPLPAQGLRDKISQLFIFTSGKDPL
Ga0099827_109516101	3300009090	Vadose Zone Soil	MRRSLWCFLSFALAAAPLSAQGGGLRDKISQLFIFSAGKDPLFLGG
Ga0099827_111598222	3300009090	Vadose Zone Soil	MLAATALDAQGLRDKISDLFIFAAGQDPLFLGGTAGSDAATALHA
Ga0066709_1022642371	3300009137	Grasslands Soil	MRRYLWSLVVLTSIATSLDAQGLRDKISELFIFSAGQDPLFL
Ga0066709_1042522492	3300009137	Grasslands Soil	MQRTLWALLSLALAAAPLPAQGGGGLRDKISQLFIFSSGKD
Ga0099796_104814821	3300010159	Vadose Zone Soil	MRRSLWCLVSLALAAAPLSAQGGGLRDKISQLFIFTNGKDPLFLGG
Ga0134082_100221574	3300010303	Grasslands Soil	MRRCWSCLVGLTLAAASLQAQGLRDKISELFIFTAGQDPLFLGGT
Ga0134088_102231731	3300010304	Grasslands Soil	MQRTLWALLSLALAAAPLPAQSGGGLRDKISQLFIFANGKDPLFLGGTAGS
Ga0134088_102315791	3300010304	Grasslands Soil	MQRTLWALLLLVLAATPLPAQGGGGLRDKISQLFIFANGKDPLFLGGT
Ga0134109_100407814	3300010320	Grasslands Soil	MQRIWWSLVFLGLVGTPLPGQGLREKISQLFIFSAGKDPL
Ga0134109_104443682	3300010320	Grasslands Soil	MRRVAWSLVGLALASAPLEGQGLRDKIAELFIFAAGK
Ga0134109_104937682	3300010320	Grasslands Soil	MRRYVWSLVVLTSIATSLDAQGLRDKISELFIFTAGKDPLFLGGTAGSDSATAL
Ga0134067_101005552	3300010321	Grasslands Soil	MWRCLWSLVGLTLAVSSLDAQGLRDKISELFIFTAGQ
Ga0134067_101517842	3300010321	Grasslands Soil	MRRYVWSLVVLTSIATSLDAQGLRDKISELFIFSAGQDPLFLGGTAGSDSATALHA
Ga0134111_104215921	3300010329	Grasslands Soil	MRWCLWSLVGFTLAATPLEAQGLRDKISQLFIFADGKDP
Ga0134080_102603642	3300010333	Grasslands Soil	MRRYLWTLVGLTLIAPALHAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHA
Ga0134062_106761382	3300010337	Grasslands Soil	MRRTLWSVLSLALVVTPLPAQGLRDKISQLFIFTSGKDPLFLGGTAGSDSA
Ga0137391_103480181	3300011270	Vadose Zone Soil	LTSNDTPRLFEAMRRYVWSLLGLALAAAPLAGQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHADH
Ga0137393_107214081	3300011271	Vadose Zone Soil	LTPDDAPHLFEAMQRYVWSLLGLILAVSSLEAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATA
Ga0137364_100772524	3300012198	Vadose Zone Soil	MRRYLWTLVGLTLVAPALHAQGLRDKISQLFIFADGKD
Ga0137382_100485851	3300012200	Vadose Zone Soil	MRRYLWTLVGLTLVAPALHAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHA
Ga0137365_1000778311	3300012201	Vadose Zone Soil	MRRYLWTLVGLTLVAPALHAQGLRDKISQLFIFADGKDPLFLGGTAGSD
Ga0137363_113870712	3300012202	Vadose Zone Soil	MQRIWWSLVFLALVGTPLPAQGLREKISQLFIFSAGKDPLFLGGTAGSDSATALHADHFV
Ga0137363_116907292	3300012202	Vadose Zone Soil	MQRFVWSLVSLALVGTPLPAQGLRDKISQLFIFSAGKDPLFLGGTAGSDSATALHADHFV
Ga0137399_115132221	3300012203	Vadose Zone Soil	MRRSLWCLVTLALAAAPLSAQGGGLRDKISELFIFTAGKDPLFL
Ga0137399_117087291	3300012203	Vadose Zone Soil	MRRYLWSLVGLTLAVSSLDAQGLRDKISQLFIFADGKDPL
Ga0137381_106195973	3300012207	Vadose Zone Soil	MRRCWSCLVGLTLAAASLPAQGLRDKISELFIFSAGQDPLFLGGTAGSDSATALHADHFI
Ga0137381_109160181	3300012207	Vadose Zone Soil	MQRIWWSLVLLALVGTPLPAQGLREKISQLFIFSAGKD
Ga0137376_101916531	3300012208	Vadose Zone Soil	MRRYVWSLVSLMLAAAPLRAQGLREKISELFIFTAGKDP
Ga0137376_117029562	3300012208	Vadose Zone Soil	MRRCLWSLVGLILAVSPLHAQGLRDKISQLFIFADGKDPLFLGG
Ga0137370_106301252	3300012285	Vadose Zone Soil	MRRCWSCLVGLTLAAASLQAQGLRYKLSELFIFTAGQDPLFLGGTAGSDSATALHADHFIPAAR
Ga0137387_106974711	3300012349	Vadose Zone Soil	MRHTLWALVSLALAVTPLPAQGSGGLRDKISQLFIFTEGKDPLFLG
Ga0137387_110651682	3300012349	Vadose Zone Soil	MRRSLWCLVSLALAAGPLPAQGGGLRDKISQLFIFTNGKD
Ga0137372_109564781	3300012350	Vadose Zone Soil	MRRHVWLLVGLTLAAPALDAQGLRSKISQLFIFADGQDP
Ga0137366_100412045	3300012354	Vadose Zone Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALH
Ga0137366_100926462	3300012354	Vadose Zone Soil	MRRYLWSLVVLTSIATSLDAQGLRDKISELFIFSAGQDPLFLGGT
Ga0137384_106955171	3300012357	Vadose Zone Soil	MRRHVWLLVGLTLLAPALDAQGLRSKISQLFIFADGKDPLFLGGTAGSDSAT
Ga0137384_108895492	3300012357	Vadose Zone Soil	MVARRLFEAMRRYVWSLLGLALAAAPLDGQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHAD
Ga0137385_102799131	3300012359	Vadose Zone Soil	MQRIWWSLVFLALVGTPLPAQGLREKISQLFIFSA
Ga0137360_115771971	3300012361	Vadose Zone Soil	MRRYSWSLAVLTLIATSLDAQGLRDKISQLFIFADGKDPLFLGGTAGSDSA
Ga0137360_118602582	3300012361	Vadose Zone Soil	MRRSLWCLVSLALAAIPLPAQGGGLREKISELFIFTAGKDPLFL
Ga0137361_102223562	3300012362	Vadose Zone Soil	MRRYLSTLLGLTLAATPLEAQGLRDKISQLFIFADGKD
Ga0137396_107381232	3300012918	Vadose Zone Soil	MRRYLWSLVGLTLAVSSLEAQGLRDKISQLFIFADG
Ga0137419_103556413	3300012925	Vadose Zone Soil	MRRTLWALVSIALVVSPLPAQGGGLRDKISQLFIFTNGKDPLFLGGTAGSDSAT
Ga0137419_113962671	3300012925	Vadose Zone Soil	MRRTLWALVSFALAVIPTSLPAQGGGLRDKISQLFIFTNGKDPLFLGGTAGSDSAT
Ga0137416_106447061	3300012927	Vadose Zone Soil	MRRCIWSLVGLTVAATSLGAQGLRDKISELFIFTAGKDPLFLGGSGSDSATA
Ga0137416_112456942	3300012927	Vadose Zone Soil	MRRYLWGLVSLALAASPRPLLAQGLREKISELFIFT
Ga0134077_101257433	3300012972	Grasslands Soil	MRHHLWSLVVLLLAAAPLDAQSLRDKIAELFIFTAGQDPLFLGGTAGSDSATALHADHF
Ga0134076_101488632	3300012976	Grasslands Soil	MRRFSWSLVSLALVVLPTLLPAQGGGLRDKISQLFIFTNGKDPLFLGGTAGSD
Ga0134076_102094592	3300012976	Grasslands Soil	MVARRLFEAMRRYLSTLLGLTLAATPLHAQGLRDKISQLFIFADGKDPLFL
Ga0134078_102193521	3300014157	Grasslands Soil	MRRYLWTLVGLTLIAPALHAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALH
Ga0134079_100495621	3300014166	Grasslands Soil	MRRYVWSLVVLTSIATSLDAQGLRDKISELFIFTAGQDPLFLGGTAGSDSATA
Ga0134079_107106202	3300014166	Grasslands Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFAD
Ga0184608_100747863	3300018028	Groundwater Sediment	MRRTLWSLLSLALVGTSLPAQGLRDKISQLFIFSSGKDP
Ga0184618_102052741	3300018071	Groundwater Sediment	MRRYLWTLVGLTLVAPALPAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHADHF
Ga0066655_101996323	3300018431	Grasslands Soil	MRSCLWSLVVFTLAATPLDAQGLRDKISQLFIFADGQDPLFLGGTAGSDSATALHA
Ga0066655_111271671	3300018431	Grasslands Soil	MQRTLWALLSLALAAAPLPAQGGGGLRDKISQLFILSSGKDPLFRGRTAGSDSTTALH
Ga0066667_108525572	3300018433	Grasslands Soil	MRRYVWSLVVLTSIATSLDAQGLRDKISELFIFTAGQDP
Ga0066667_111501462	3300018433	Grasslands Soil	MRHHLWSLVVLLLAAAPLEAQSLRDKIAELFIFTAGQDPLFLGGTAGSDSATALHADHFVPSAVADN
Ga0066662_106669621	3300018468	Grasslands Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGKDPLFLGG
Ga0066669_101405864	3300018482	Grasslands Soil	MRRCVWSLVSLMLAAAPLGAQGLREKISELFIFTAGKDPLFLGGTAG
Ga0066669_107592232	3300018482	Grasslands Soil	MRRYLSTLLGLMLAATPLHAQGLRDKISQLFIFADG
Ga0210382_101928552	3300021080	Groundwater Sediment	MRRYLWTLVGLTLVAPALPAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHADRF
Ga0207653_100239202	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRRYLWSLVGLTLVATSLNAQGLRDKLSELFIFTAG
Ga0209234_10033736	3300026295	Grasslands Soil	MRWCLWSLVGFTLAATPLEAQGLRDKISQLFIFADGKDPLFL
Ga0209234_10757101	3300026295	Grasslands Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGKDPLFL
Ga0209236_12645642	3300026298	Grasslands Soil	MRRYLWTLVGLTLVAPALHAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATALHADH
Ga0209238_10002071	3300026301	Grasslands Soil	MRRCIWSLVGLTVAATSLGAQGLRDKISELFIFTAGKDPLFLGGT
Ga0209238_12494831	3300026301	Grasslands Soil	MERCLWSLIAFTLASAPLAGQGLRDKIAQLFIFADGKDPLFLGGTAGSDSATALHADHFVPS
Ga0209469_10136421	3300026307	Soil	MRWCLWSLVGFTLAATPLEAQGLRDKISQLFIFADGKDPLFLGGTAG
Ga0209055_12400972	3300026309	Soil	MRRCWSCLVGLTLAAASLQAQGLRDKISELFIFTAGQDPLFLGGTAGSDSATALHA
Ga0209761_11757362	3300026313	Grasslands Soil	MRRCLCSLLGLTLAATSLDAQGLRDKISDLFIFGAG
Ga0209761_13450031	3300026313	Grasslands Soil	MRRYLSTLLGLTLAATPLEAQGLRDKISQLFIFADGKDP
Ga0209801_10783612	3300026326	Soil	MRCWLWSFLALALSTTALNAQGLRDKISQLFIFTTGQD
Ga0209375_10179934	3300026329	Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGKDPLFLGGTAGSDSA
Ga0209473_11750772	3300026330	Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGK
Ga0209267_10640493	3300026331	Soil	MRRYLLTLVGLTLIATSLNAQGLRDKLSELFIFTAGQDPLFLGGTAGSDSATALHA
Ga0209267_10971941	3300026331	Soil	MRWCLWSLVAFTLAATPLEAQGLRDKISQLFIFADGKDPL
Ga0209803_10293061	3300026332	Soil	MRRWTSSLVGLVFVSTPLAAQGLRDQIAELFIFTAG
Ga0209804_10157066	3300026335	Soil	MRRCWSCLVGLTLAAASLQAQGLRDKISELFIFTAGQD
Ga0209157_12585511	3300026537	Soil	MRHHLWSLVVLMLAAAPLDAQSLRDKIAELFIFAAGQDPLFLGGTAGSDSATALHADH
Ga0209376_13337312	3300026540	Soil	MRRFSWSLVSLALVVLPTLLPAQGGGLRDKISQLFIFTNGKDPLFLGGTAGSDSATAIHADHF
Ga0209590_100258841	3300027882	Vadose Zone Soil	MRWCLWSLVGFTLAATPLEAQGLRDKISQLFIFADGKDPLFLGGTAGSDSATA
Ga0209590_105541341	3300027882	Vadose Zone Soil	MRRCLCSLVGLMLAATALDAQGLRDKISDLFIFAAGQDPLFLGGTAGSDAATALHA
Ga0137415_103859741	3300028536	Vadose Zone Soil	MRRYLWSLVGLTLAVSSLEAQGLRDKISQLFIFAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F065608

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences