NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F065692

Metagenome Family F065692

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F065692
Family Type Metagenome
Number of Sequences 127
Average Sequence Length 44 residues
Representative Sequence MIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Number of Associated Samples 79
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 44.09 %
% of genes near scaffold ends (potentially truncated) 37.01 %
% of genes from short scaffolds (< 2000 bps) 87.40 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.654 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(51.968 % of family members)
Environment Ontology (ENVO) Unclassified
(82.677 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.402 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.52%    β-sheet: 8.70%    Coil/Unstructured: 34.78%
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51015202530354045MIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVPSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
28.3%71.7%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Sediment
Freshwater
Marine
Microbial Mat
Worm Burrow
Marine
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Estuary Water
Salt Marsh
Marine
Estuarine Water
Marine
Seawater
Sediment
Marine Harbor
Macroalgal Surface
11.8%52.0%3.9%4.7%3.1%7.1%5.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1000480433300000101MarineMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
DelMOSpr2010_1007482943300000116MarineMKQYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIIVEQEDVP*
DelMOSpr2010_1015427633300000116MarineMIFKVIRSKAISYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP*
DelMOSpr2010_1015516233300000116MarineMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDLP*
DelMOSpr2010_1023216223300000116MarineMIYKVIRSKAIQYLFDTIEDARKCRERLMDMGYNNISIEIEQEDLP*
DelMOSpr2010_1024356923300000116MarineMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYKNISIVVEQEDVP*
DelMOWin2010_1014799113300000117MarineMIQYKVIRSKAISYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP*
DelMOWin2010_1017872733300000117MarineMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYENISIVVEQEDVP*
DelMOWin2010_1018475743300000117MarineMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYKNISIVVEQEDVP*
BBAY92_1018384513300000947Macroalgal SurfaceMIFKVIRSKAIQYIFDTIEAARECREDLMNMGYNNISIEVEQEDVP*
BBAY94_10001165173300000949Macroalgal SurfaceMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYKNISIEVEQEDVP*
BBAY88_105508513300001183Macroalgal SurfaceMIFKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIEIEQEDVP*
Water_10426013300002930Estuary WaterMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
Ga0076920_10768033300005732MarineMIFKVIRSKAISYLFDTIEAARECRKDLMNMGYENISIEIEQEDVP*
Ga0075478_1005427333300006026AqueousMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQDDVP*
Ga0075478_1012069453300006026AqueousMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0075478_1015895913300006026AqueousIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0075478_1017852223300006026AqueousMIYKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0098073_103541113300006734MarineMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0098073_104031133300006734MarineMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP*
Ga0098073_104458413300006734MarineSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0098048_100843093300006752MarineMIYKVIRSKAIQYIFDTIEDARECRKDLMNMGYENISIVVEQEDVP*
Ga0098048_120822823300006752MarineMIFKVIRSKAIQYLFDTIEDARECRERLIDMGYENISIEVEQEDVP*
Ga0098074_100645313300006790MarineKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0098074_117488423300006790MarineMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEIEQEDVP*
Ga0098055_1009210113300006793MarineMIYKVIRSKAIQYIFDTIEDARECRERLTDMGYNNISIEVEQEDVP*
Ga0070749_1003007673300006802AqueousMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0070749_1030711933300006802AqueousRRVMIFKVIRSKAIQYLFDTIEDARECRERLIDMGYNNISIVVEQEDVP*
Ga0070749_1049154613300006802AqueousRSKAISYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP*
Ga0070749_1059237023300006802AqueousMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYENISIEVEQEDVP*
Ga0070749_1064045913300006802AqueousQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0070754_1015393643300006810AqueousMKQYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIIVEPEDLP*
Ga0070754_1023599113300006810AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQED
Ga0070754_1030838933300006810AqueousVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0070754_1053072913300006810AqueousRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
Ga0075477_1001998913300006869AqueousMIYKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISI
Ga0070750_1021254933300006916AqueousSYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP*
Ga0070750_1041403413300006916AqueousTRRVMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0070746_1028713133300006919AqueousYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP*
Ga0070746_1047314613300006919AqueousVMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
Ga0070746_1052289223300006919AqueousMIFKVIRTKAIHYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0098046_114115923300006990MarineMIYKVIRSKAIQYIFDTIEDARECRKDLMNMGYENITIEVEQEDVP*
Ga0075468_1008646923300007229AqueousMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0075460_1002679923300007234AqueousMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0070745_104824643300007344AqueousMKKYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIIVEPEDLP*
Ga0070745_111884713300007344AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP*
Ga0070745_127769623300007344AqueousMIFKVIRSKAISYIFDTIEDARECRKDLMNMGYENISIEIEQEDVP*
Ga0070745_134350833300007344AqueousVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0070752_114001233300007345AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQ
Ga0070752_133350023300007345AqueousMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYKNISIIVEQEDVP*
Ga0070752_134763513300007345AqueousRVMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
Ga0070753_117310113300007346AqueousMIFKVIRSKAISYIFDTMQDARECRKDLMNMGYENISIVVEQEDVP*
Ga0070753_118163313300007346AqueousKVIRSKAIQYIFDTIEDARECREDLMNMGYNNISIVVEQEDVP*
Ga0099849_111066123300007539AqueousMIFKVIRTKAIQYIFDTIEDARECREDLMNMGYKNISIVVEQEDIP*
Ga0099849_112924133300007539AqueousSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0099849_125742823300007539AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVE
Ga0099849_128873613300007539AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP*
Ga0070751_123277733300007640AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEV
Ga0070751_123747923300007640AqueousMIFKVIRSKAIQYIFDTIEDARECRERLMAMGYKNISIVVEQEDVP*
Ga0075480_1057300423300008012AqueousMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVV
Ga0098061_119723833300010151MarineLHNTRRVMIFKVIRSKAIQYLFDTIEDARECRERLIDMGYENISIEVEQEDVP*
Ga0129348_106774813300010296Freshwater To Marine Saline GradientRVMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP*
Ga0129345_108237723300010297Freshwater To Marine Saline GradientSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP*
Ga0129351_109140823300010300Freshwater To Marine Saline GradientMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP*
Ga0129351_117595533300010300Freshwater To Marine Saline GradientMIFKVIRSKAIQYIFDTIEDARKCRERLMDMGYKNISIEVEQEDVP*
Ga0136655_108735923300010316Freshwater To Marine Saline GradientMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYENISIEVEQEDVP*
Ga0129324_1020304323300010368Freshwater To Marine Saline GradientMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIVVEQEDVP*
Ga0151677_110494413300011258MarineMIFKVIRSKAISYIFDTIEAARECRERLMDMGYKNISIVVEQEDVP
Ga0181399_102252333300017742SeawaterMIFKVIRSKAIQYLFDTIEDARECRERLTDMGYENISIVVEEEDLP
Ga0181402_1002592103300017743SeawaterMIFKVIRSKAIQYLFDTIEDARECRERLIDMGYNNISIEIEQEDVP
Ga0181410_109575123300017763SeawaterMKQYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIEVEQEDLP
Ga0181380_117936423300017782SeawaterMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIEIEQEDVP
Ga0181380_118267623300017782SeawaterMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP
Ga0181600_1024707813300018036Salt MarshKAIQYLFDTIEDARECRERLMDMGYKNISIVVEQEDVP
Ga0181601_1037911123300018041Salt MarshMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIVVEQEDVP
Ga0181553_1009990113300018416Salt MarshMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYENISIVVEQEDVP
Ga0181563_1005433653300018420Salt MarshMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP
Ga0194002_104512723300019745SedimentMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0194024_1000048383300019765FreshwaterMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0213867_119708923300021335SeawaterMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYKNISIVVEQEDVP
Ga0213865_1009575043300021373SeawaterMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP
Ga0222716_1049299213300021959Estuarine WaterMIFKVIRSKAISYIFDTIEAARECRKDLMNMGYENISIVVE
Ga0196883_102899613300022050AqueousMKQYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIIVEPEDLP
Ga0212021_104203113300022068AqueousIRTKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP
Ga0212021_110814523300022068AqueousMIQYKVIRSKAISYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP
Ga0212026_107549913300022069AqueousMIFKVIRSKAISYIFDTIEDARECRKDLMNMGYENISIEIEQEDVP
Ga0212028_111415723300022071AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP
Ga0196891_101407323300022183AqueousMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYENISIEVEQEDVP
Ga0196899_100721693300022187AqueousMIYKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP
Ga0196899_105805443300022187AqueousVMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0196899_108186213300022187AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNI
Ga0196899_112447023300022187AqueousMIFKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0196899_120727613300022187AqueousMIYKVIRSKAIQYIFDTIEDARECREDLMNMGYNNISIVVEQEDIP
Ga0224513_1002641733300022220SedimentMKQYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIIVEPEDVP
(restricted) Ga0255040_10000948153300024059SeawaterMIFKVIRSKAISYLFDTIEAARECRKDLMNMGYDNISIEIEQEDVP
(restricted) Ga0255039_1035466613300024062SeawaterMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYDNITIVVEQEDVP
Ga0228669_107315913300024185SeawaterSYIFDTIEAARECRKDLMNMGYNNISIEVEQEDVP
Ga0228655_102968823300024236SeawaterMIFKVIRSKAISYIFDTIEAARECRKDLMNMGYNNISIEVEQEDVP
Ga0208018_11162113300025057MarineMIFKVIRSKAIQYLFDTIEAARECRERLMDMGYNNISIEVEQEDVP
Ga0208667_106947923300025070MarineMIFKVIRSKAIQYLFDTIEDARECRERLIDMGYENISIEVEQEDVP
Ga0208791_104044713300025083MarineMIYKVIRSKAIQYIFDTIEDARECRERLTDMGYNNISIEVEQEDVP
Ga0208791_107505523300025083MarineMIFKVIRSKAISYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP
Ga0208794_106546713300025093MarineMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIEIEQEDVP
Ga0208149_109276313300025610AqueousMIYKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0208004_103308513300025630AqueousMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYENISIVVE
Ga0208898_105102723300025671AqueousYKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0208162_115158023300025674AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYNNISIVV
Ga0208899_114584733300025759AqueousKAISYIFDTIEAARECRKDLMNMGYENISIVVEQEDVP
Ga0208899_118012443300025759AqueousVMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIVVEQEDIP
Ga0208767_119182513300025769AqueousMIQYKVIRSKAISYIFDTIEAARECRKDLMNMGYENIS
Ga0208542_114234513300025818AqueousMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYNNISI
Ga0208542_120716823300025818AqueousMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYKNISIVVEQEDIP
Ga0208917_126085943300025840AqueousQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP
Ga0208645_112412153300025853AqueousMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQDDVP
Ga0208645_113477813300025853AqueousMTFKVIRSKAIQYLFDTIEDARECRERLMDMGYKNISIEVEQEDV
Ga0208644_120594313300025889AqueousQYLFDTIEDARECRERLMDMGYKNISIEVEQEDVP
Ga0228674_100314033300028008SeawaterMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYKNISIIVEQEDVP
Ga0135227_104221123300029302Marine HarborMIYKVIRSKAIQYLFDTIEDARECRKDLMNMGYENISIEVEQEDVP
Ga0316201_1042919543300032136Worm BurrowMIFKVIRSKAIQYLFDTIEDARECRERLMDMGYENISIIVEQEDVP
Ga0316201_1123775513300032136Worm BurrowMIYKVIRSKAIQYIFDTIEDARECRERLIDMGYNNISIEVEQEDLP
Ga0316203_104990623300032274Microbial MatMIFKVIRTKAIQYLFDTIEDARECRERLMNMGYENISIIVEPEDLP
Ga0316204_1044691123300032373Microbial MatMIFKVIRTKAIQYIFDTIEDARECRERLMDMGYKNISIVVEQEDVP
Ga0348335_043361_3_1103300034374AqueousQYLFDTIEDARECRERLMDMGYNNISIEVEQEDVP
Ga0348336_123565_711_8213300034375AqueousIQYLFDTIEDARECRERLMDMGYKNISIEVEQDDVP
Ga0348336_157005_11_1543300034375AqueousMKQYKVIRSKAISYIFDTIDAARDCRKDLMNMGYENISIIVEPGDLP
Ga0348336_197126_50_1903300034375AqueousMIFKVIRTKAIQYLFDTIEDARECRERLMDMGYKNISIIVEQEDVP
Ga0348336_202308_337_4773300034375AqueousMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYDNISIVVEQEDVP


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