NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F066082

Metagenome / Metatranscriptome Family F066082

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F066082
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 45 residues
Representative Sequence MKTFVRCGQLFTGREDDARAGEILVFDERGMLDYVGPEKGSPR
Number of Associated Samples 104
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.64 %
% of genes near scaffold ends (potentially truncated) 97.64 %
% of genes from short scaffolds (< 2000 bps) 90.55 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.638 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(41.732 % of family members)
Environment Ontology (ENVO) Unclassified
(44.882 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.268 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 8.45%    β-sheet: 28.17%    Coil/Unstructured: 63.38%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF02746MR_MLE_N 29.92
PF13378MR_MLE_C 12.60
PF13426PAS_9 5.51
PF08447PAS_3 3.15
PF00355Rieske 2.36
PF10399UCR_Fe-S_N 1.57
PF018125-FTHF_cyc-lig 1.57
PF01979Amidohydro_1 1.57
PF00582Usp 0.79
PF13594Obsolete Pfam Family 0.79
PF12802MarR_2 0.79
PF02978SRP_SPB 0.79
PF00115COX1 0.79
PF00903Glyoxalase 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG4948L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamilyCell wall/membrane/envelope biogenesis [M] 59.84
COG02125-formyltetrahydrofolate cyclo-ligaseCoenzyme transport and metabolism [H] 1.57
COG0541Signal recognition particle GTPaseIntracellular trafficking, secretion, and vesicular transport [U] 0.79


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.64 %
UnclassifiedrootN/A2.36 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001545|JGI12630J15595_10040287All Organisms → cellular organisms → Bacteria → Proteobacteria947Open in IMG/M
3300001867|JGI12627J18819_10338482Not Available608Open in IMG/M
3300004080|Ga0062385_10785367All Organisms → cellular organisms → Bacteria → Proteobacteria622Open in IMG/M
3300004082|Ga0062384_100152029All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas1314Open in IMG/M
3300004091|Ga0062387_100835961All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria690Open in IMG/M
3300004091|Ga0062387_101713379All Organisms → cellular organisms → Bacteria → Proteobacteria511Open in IMG/M
3300004633|Ga0066395_10692051All Organisms → cellular organisms → Bacteria → Proteobacteria604Open in IMG/M
3300004635|Ga0062388_102112237All Organisms → cellular organisms → Bacteria → Proteobacteria585Open in IMG/M
3300005178|Ga0066688_11018232All Organisms → cellular organisms → Bacteria → Proteobacteria504Open in IMG/M
3300005363|Ga0008090_10084143All Organisms → cellular organisms → Bacteria → Proteobacteria660Open in IMG/M
3300005434|Ga0070709_10567998All Organisms → cellular organisms → Bacteria → Proteobacteria870Open in IMG/M
3300005552|Ga0066701_10860671All Organisms → cellular organisms → Bacteria → Proteobacteria538Open in IMG/M
3300005569|Ga0066705_10499249All Organisms → cellular organisms → Bacteria → Proteobacteria762Open in IMG/M
3300005598|Ga0066706_10423399All Organisms → cellular organisms → Bacteria → Proteobacteria1060Open in IMG/M
3300005764|Ga0066903_102486645All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300005764|Ga0066903_108066571All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium540Open in IMG/M
3300006028|Ga0070717_10939058All Organisms → cellular organisms → Bacteria → Proteobacteria788Open in IMG/M
3300006173|Ga0070716_100126185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1610Open in IMG/M
3300006796|Ga0066665_10452224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1059Open in IMG/M
3300006804|Ga0079221_11367552All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300007265|Ga0099794_10578362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium594Open in IMG/M
3300009792|Ga0126374_11205399All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300010048|Ga0126373_10982144All Organisms → cellular organisms → Bacteria → Proteobacteria910Open in IMG/M
3300010048|Ga0126373_11937305All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium652Open in IMG/M
3300010048|Ga0126373_12861945All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales538Open in IMG/M
3300010361|Ga0126378_11337278All Organisms → cellular organisms → Bacteria → Proteobacteria810Open in IMG/M
3300010361|Ga0126378_12735352All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium564Open in IMG/M
3300010361|Ga0126378_12908466All Organisms → cellular organisms → Bacteria → Proteobacteria546Open in IMG/M
3300010366|Ga0126379_11620338All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium752Open in IMG/M
3300010376|Ga0126381_100254144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis2383Open in IMG/M
3300010376|Ga0126381_103158953All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium652Open in IMG/M
3300010398|Ga0126383_10070684All Organisms → cellular organisms → Bacteria → Proteobacteria3001Open in IMG/M
3300010398|Ga0126383_11331059All Organisms → cellular organisms → Bacteria → Proteobacteria808Open in IMG/M
3300012202|Ga0137363_10702205All Organisms → cellular organisms → Bacteria → Proteobacteria856Open in IMG/M
3300012206|Ga0137380_11261740All Organisms → cellular organisms → Bacteria → Proteobacteria624Open in IMG/M
3300012207|Ga0137381_11079598All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium691Open in IMG/M
3300012917|Ga0137395_10851216All Organisms → cellular organisms → Bacteria → Proteobacteria660Open in IMG/M
3300012989|Ga0164305_11906045All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300016294|Ga0182041_11743114All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium577Open in IMG/M
3300016319|Ga0182033_10915346All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium777Open in IMG/M
3300016319|Ga0182033_11240967All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium668Open in IMG/M
3300016357|Ga0182032_10533808All Organisms → cellular organisms → Bacteria → Proteobacteria969Open in IMG/M
3300016357|Ga0182032_11032961All Organisms → cellular organisms → Bacteria → Proteobacteria703Open in IMG/M
3300016357|Ga0182032_11420989All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium601Open in IMG/M
3300016371|Ga0182034_10604970All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium925Open in IMG/M
3300016371|Ga0182034_11013674All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium717Open in IMG/M
3300016387|Ga0182040_10434387All Organisms → cellular organisms → Bacteria → Proteobacteria1037Open in IMG/M
3300016404|Ga0182037_11055024All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium710Open in IMG/M
3300016422|Ga0182039_11112129All Organisms → cellular organisms → Bacteria → Proteobacteria712Open in IMG/M
3300016422|Ga0182039_11167415All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium695Open in IMG/M
3300016422|Ga0182039_11816201All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium559Open in IMG/M
3300016445|Ga0182038_12031359All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium521Open in IMG/M
3300017975|Ga0187782_10759767All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales749Open in IMG/M
3300018085|Ga0187772_10013872All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4464Open in IMG/M
3300019889|Ga0193743_1217787All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300020581|Ga0210399_10074935All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2742Open in IMG/M
3300020582|Ga0210395_10137040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B121822Open in IMG/M
3300020582|Ga0210395_10406469All Organisms → cellular organisms → Bacteria → Proteobacteria1024Open in IMG/M
3300021088|Ga0210404_10246121All Organisms → cellular organisms → Bacteria → Proteobacteria971Open in IMG/M
3300021170|Ga0210400_10383769All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300021170|Ga0210400_10696455All Organisms → cellular organisms → Bacteria → Proteobacteria836Open in IMG/M
3300021180|Ga0210396_10423000All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B121170Open in IMG/M
3300021432|Ga0210384_11213868All Organisms → cellular organisms → Bacteria → Proteobacteria658Open in IMG/M
3300021444|Ga0213878_10454054All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium561Open in IMG/M
3300021477|Ga0210398_10162282All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1819Open in IMG/M
3300021478|Ga0210402_11516449All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300021479|Ga0210410_10898050All Organisms → cellular organisms → Bacteria → Proteobacteria773Open in IMG/M
3300021560|Ga0126371_10135223All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2509Open in IMG/M
3300022527|Ga0242664_1117238All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300022714|Ga0242671_1061972All Organisms → cellular organisms → Bacteria → Proteobacteria645Open in IMG/M
3300022717|Ga0242661_1127256Not Available555Open in IMG/M
3300025939|Ga0207665_10237598All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1341Open in IMG/M
3300026490|Ga0257153_1064643All Organisms → cellular organisms → Bacteria → Proteobacteria741Open in IMG/M
3300026527|Ga0209059_1122838All Organisms → cellular organisms → Bacteria → Proteobacteria991Open in IMG/M
3300027701|Ga0209447_10145238All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium651Open in IMG/M
3300027767|Ga0209655_10234802All Organisms → cellular organisms → Bacteria → Proteobacteria600Open in IMG/M
3300027783|Ga0209448_10098821Not Available978Open in IMG/M
3300028906|Ga0308309_10723948All Organisms → cellular organisms → Bacteria → Proteobacteria864Open in IMG/M
3300031039|Ga0102760_10440280All Organisms → cellular organisms → Bacteria → Proteobacteria707Open in IMG/M
3300031469|Ga0170819_14908993All Organisms → cellular organisms → Bacteria → Proteobacteria611Open in IMG/M
3300031545|Ga0318541_10424295All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium744Open in IMG/M
3300031546|Ga0318538_10039646All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2254Open in IMG/M
3300031561|Ga0318528_10111466All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1442Open in IMG/M
3300031572|Ga0318515_10533372All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium626Open in IMG/M
3300031573|Ga0310915_10889629All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium624Open in IMG/M
3300031668|Ga0318542_10330732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium782Open in IMG/M
3300031679|Ga0318561_10844605All Organisms → cellular organisms → Bacteria → Proteobacteria503Open in IMG/M
3300031680|Ga0318574_10074298All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1842Open in IMG/M
3300031708|Ga0310686_115133645All Organisms → cellular organisms → Bacteria → Proteobacteria2950Open in IMG/M
3300031713|Ga0318496_10581522All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium619Open in IMG/M
3300031736|Ga0318501_10417770All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium726Open in IMG/M
3300031740|Ga0307468_100587972All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium906Open in IMG/M
3300031744|Ga0306918_10420888All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300031753|Ga0307477_10755353All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium648Open in IMG/M
3300031768|Ga0318509_10388654All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium780Open in IMG/M
3300031769|Ga0318526_10480741All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium507Open in IMG/M
3300031771|Ga0318546_10206131All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1344Open in IMG/M
3300031771|Ga0318546_10754991All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium685Open in IMG/M
3300031792|Ga0318529_10556054All Organisms → cellular organisms → Bacteria → Proteobacteria533Open in IMG/M
3300031793|Ga0318548_10651663All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300031794|Ga0318503_10093640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium950Open in IMG/M
3300031796|Ga0318576_10032419All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2172Open in IMG/M
3300031796|Ga0318576_10260440All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium818Open in IMG/M
3300031846|Ga0318512_10113169All Organisms → cellular organisms → Bacteria → Proteobacteria1285Open in IMG/M
3300031860|Ga0318495_10215333All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium863Open in IMG/M
3300031890|Ga0306925_10457394All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1363Open in IMG/M
3300031893|Ga0318536_10272083All Organisms → cellular organisms → Bacteria → Proteobacteria861Open in IMG/M
3300031893|Ga0318536_10372441All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium722Open in IMG/M
3300031897|Ga0318520_10083360All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1762Open in IMG/M
3300031897|Ga0318520_10863390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales569Open in IMG/M
3300031912|Ga0306921_11451302All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium752Open in IMG/M
3300031942|Ga0310916_10051795All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales3141Open in IMG/M
3300031942|Ga0310916_11749261All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium502Open in IMG/M
3300031947|Ga0310909_10054873All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3076Open in IMG/M
3300031962|Ga0307479_10435413All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1296Open in IMG/M
3300031981|Ga0318531_10355193All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium663Open in IMG/M
3300032001|Ga0306922_11218185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium765Open in IMG/M
3300032041|Ga0318549_10092673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1309Open in IMG/M
3300032055|Ga0318575_10421513All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium677Open in IMG/M
3300032059|Ga0318533_10240494All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1305Open in IMG/M
3300032063|Ga0318504_10093996All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1334Open in IMG/M
3300032090|Ga0318518_10216788All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium981Open in IMG/M
3300032094|Ga0318540_10625349All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium519Open in IMG/M
3300032261|Ga0306920_100287412All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2451Open in IMG/M
3300032261|Ga0306920_102203904All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium766Open in IMG/M
3300033289|Ga0310914_10107261All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2413Open in IMG/M
3300033289|Ga0310914_11000468All Organisms → cellular organisms → Bacteria → Proteobacteria736Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil41.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil15.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil10.24%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil6.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.15%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.36%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.36%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.36%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.57%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.57%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.79%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.79%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.79%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021444Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02EnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300027701Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031039Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12630J15595_1004028723300001545Forest SoilMRTFVRCGQLFTGREDDTRADEILVFDERGMLDYVGP
JGI12627J18819_1033848223300001867Forest SoilMKTFVRCGQLFTGREDDVRVEEILVYDERGTLDYVGPEKGS
Ga0062385_1078536713300004080Bog Forest SoilMKTFVRCGHLFTGQEDDARKGETLVFDERGALDYVGPEKNAPRKARNDHVLDYSA
Ga0062384_10015202913300004082Bog Forest SoilMKTIVRCGQLFTGREDEARADETLIFDEQGMLEYVGPEAGSPRRA
Ga0062387_10083596113300004091Bog Forest SoilMKTFVRCGHLFTGQEDDARKGETLVFDERGALDYVGPEKNAPRRARNDHVLDYSA
Ga0062387_10171337913300004091Bog Forest SoilMRTFFRCGQLFSGREDEARNGEVLVFDQQGVIEYAGPEAGSPRPARSDRVVD
Ga0066395_1069205113300004633Tropical Forest SoilMKTFVRCGQLFTGRDDEARRDEILVFDEEGVLDYVGSEAGSPRRARSDRTLDGGFN*
Ga0062388_10211223713300004635Bog Forest SoilMKTFVRCGHLFTGQEDDARKGETLVFDERGALDYVGPEKNAPR
Ga0066688_1101823213300005178SoilMRTFVRCGQLFSGREDDALKSEILVFDQQGVIEYAGPEAASPRRAR
Ga0008090_1008414323300005363Tropical Rainforest SoilMKTFVRCGHLFTGKGDEARAGETLVFDERGTLDYVGPEKN
Ga0070709_1056799823300005434Corn, Switchgrass And Miscanthus RhizosphereMRTFVRCGQLFSGREDDAHRGEILVFDHEGVVEYAGAEAASPRRARSDQMLDYSGGFVM
Ga0066701_1086067113300005552SoilVTKTFVRCGHLFTGQEDDARAGEILVFDEQGMLDYVGPEKGAPRRARNDH
Ga0066705_1049924923300005569SoilMRTFVRCGQLFSGREDDALKSEILVFDQQGVIEYAGPEAASPRRARSDQVLDY
Ga0066706_1042339923300005598SoilMKTFVRCGHLFTGRENDARTGETLVFDERGMLDYVGP
Ga0066903_10248664513300005764Tropical Forest SoilMKTFVRCGQLFTGREDDARADEILIFDERGMVDYVGP
Ga0066903_10806657123300005764Tropical Forest SoilMKTFVCCGQLFTGREDEARTDAVLVFDEGGVIEHVGPEGGLPRPIRGDRVIDCSGLFVLPGLID
Ga0070717_1093905823300006028Corn, Switchgrass And Miscanthus RhizosphereMRTFVRCGQLFSGREDDAHRGEILVFDHEGVVEYAGAEAASPRRARSDQMLDYSGGF
Ga0070716_10012618513300006173Corn, Switchgrass And Miscanthus RhizosphereMKTFVRCGQLFTGREDEAGAGEILIFDERGMLDYVGPETGSPRRARSDRVLDYSR
Ga0066665_1045222423300006796SoilMKTFVRCGQLFTGREDDARADEILVFDEQGVLDYAGPEAGS
Ga0079221_1136755223300006804Agricultural SoilMKTFVRCGQLFTGREDEARAAEILVFDERGMLDYVGPEAGSPRARGERVLDY
Ga0099794_1057836213300007265Vadose Zone SoilMKTFVRCGHLFTGQEDDARAGETLVFDERGTLDYIGL
Ga0126374_1120539923300009792Tropical Forest SoilMKTFVRCGQLFTGREDEARPDEVLVFDERGTLSFAGPEAGSPRRAR
Ga0126373_1098214413300010048Tropical Forest SoilMRSFVRCGQLFTGREDDARRDEILVFDEEGVLDYVGPETGS
Ga0126373_1193730513300010048Tropical Forest SoilLFEREFTAMKTFVRCGHLFTGHEDEARKGEALVFDERGTPDYVGPEKNAPRR
Ga0126373_1286194513300010048Tropical Forest SoilVQAVRSFVRCGQLFTGREDDARRDEILVFDEEGVLDYVGPETGS
Ga0126378_1133727813300010361Tropical Forest SoilMKTFVRCGQLFIGREDEARADEILIYDERGMLGYVGPEANSPRRARGDR
Ga0126378_1273535223300010361Tropical Forest SoilMKTFVRCGHLFTGTEDDARSDETLVFDESGTLEYV
Ga0126378_1290846613300010361Tropical Forest SoilMKTFVRCGQLFTGRDDEARRDEILVFDEEGVLDYVGSEAESPRRARGDRALDYSACL*
Ga0126379_1162033813300010366Tropical Forest SoilMKTFVRCGHLFTGSEDEARKGETLVFDERGSLDYVGPEKSAPRR
Ga0126381_10025414433300010376Tropical Forest SoilMKTFVRCGQLFTGREDDARTGEILVCDERGTLDYVGPEKG
Ga0126381_10315895313300010376Tropical Forest SoilMKTFVRCGQLFTGQEDDARIGEVVVFDAQGVIEYVGPEVGAPRRVRG
Ga0126383_1007068413300010398Tropical Forest SoilMKTFVRCGQLFTGREDDARRDEILVFDEEGVLDYVGPEAGSPRRARGDRTLDYSG
Ga0126383_1133105923300010398Tropical Forest SoilCGQLFTGRDDEARRDEILVFDEEGVLDYVGSEAESPRRARGDRALDYSACL*
Ga0137363_1070220513300012202Vadose Zone SoilMRSFVRCGQLFTGREDDTRADEILVFDERGMLDYVGPEKGSPRRVRSDKILDYS
Ga0137380_1126174013300012206Vadose Zone SoilMKTFVRCGQLFTGREDDARAGEILVFDERGMLDYVGPEKGSPR
Ga0137381_1107959813300012207Vadose Zone SoilMKTFVRCGHLFTGQEDDARAGETLVFDERGTLDYVGPEKGAPRRARN
Ga0137395_1085121613300012917Vadose Zone SoilMVMRTFVRCGQLFTGREDDTRADEILVFDERGMLDYVGPEKGS
Ga0164305_1190604523300012989SoilMRTFVRCGQFFSGREDDAHRGEILVFDHEGVVEYAGAEAGSPR
Ga0182041_1174311423300016294SoilMKTFVRCGHLFTGSEDEAQKGGILVFDERGMLDYVGPEKNAQRRARNDRSV
Ga0182033_1091534623300016319SoilMKTFVRCGHLFTGKEDEARAGETLVFDERGTLDYVG
Ga0182033_1124096723300016319SoilMRTFVRCGQLFSGREDEAHKGEILVFGQQGVIEYAGAEAGSPPRARSDQVLDYS
Ga0182032_1053380813300016357SoilMRTLIRCGQLFTGREDDARAGEILVFDERGVLDYVGPE
Ga0182032_1103296113300016357SoilMKTFVRCGQIFTGREDDARRDEILVFDEEGVLDYVGP
Ga0182032_1142098913300016357SoilMKTFVRCGHLFTGREDDVRAGDTLVFDDRGTLDYVGP
Ga0182034_1060497023300016371SoilMKTFVRCGHLFTGREDEARSGATLVFDERGTIDYVGLEK
Ga0182034_1101367413300016371SoilMKTFVHCGQLFTGQEDDARTGAILVFDETGVIEHVGPDAALPRRAPGDRVIDCSGLF
Ga0182040_1043438723300016387SoilMKTFVCCGQLFTGNEDDARPGQTLVFDGDGVIDYVGA
Ga0182037_1105502423300016404SoilMKTCVRCGHLFTGHEDEARKGQTLVFDERGTLDYVGPEKNAPRRSRNDRLLDYSDYC
Ga0182039_1111212913300016422SoilMKTFVRCGQLFTGREDDARVEEILVYDERGTLDYV
Ga0182039_1116741523300016422SoilMKTFVRCGHLFTGSEDEAQKGGVLVFDEHGMLDYVGPDK
Ga0182039_1181620123300016422SoilMKTFVRCGHLFTGREDEARAGETLVFDETGTLDYVG
Ga0182038_1203135913300016445SoilMKTFVRCGHLFTGSEDEAQKGGVLVFDEHGMLDYVGPDKTAPRRARNDR
Ga0187782_1075976713300017975Tropical PeatlandMRTFVRCGQLFTGREDEARAGEVLVFDAAGIVEYSGDEAGAPQRAAN
Ga0187772_1001387243300018085Tropical PeatlandMKIFVRCGHLFTGREDDAREDETLVFDERGMLGYVGPEKNAPRRARND
Ga0193743_121778713300019889SoilMKTFVRCGQLFTGAEDEARSGEVLVFDGDGRLSYVGPEAGAPRRTK
Ga0210399_1007493513300020581SoilMRTFVRCGQLFSGREDDARKGETLVFDQQGVIEYSGPEAAS
Ga0210395_1013704013300020582SoilMKTLVRCGQLFTGRDDDAVAGQTMVFDEAGVIEYVGAEADAPRRTREDRALDYSG
Ga0210395_1040646913300020582SoilMKTFVRCGQLFTGCEDEAEAGRMLVFDQEGVLDYVGAEQAAPRRAGGDRML
Ga0210404_1024612123300021088SoilMRTFVRCGQLFSGREDDARKGETLVFDQQGVIEYAGPEAASPRRARSDQVLD
Ga0210400_1038376913300021170SoilMKTFVRCGTLFTGREDEPRNGEVLVYDDGGRLLYVGPE
Ga0210400_1069645523300021170SoilMKTFVRCGQLFTGREDDTRADEILVFDERGMLDYVGPEKGSPRRVRSD
Ga0210396_1042300033300021180SoilMKTLVRCGQLFTGRDDDAVAGQTMVFDEAGVIEYVGAEADAPRRTR
Ga0210384_1121386823300021432SoilVTRTFVRCGHLFTGQEDDARAGETLVFDERGTLDYVG
Ga0213878_1045405413300021444Bulk SoilMKTFVRCGHLFTGREDEARPGETLVFDECGTLDYVGPE
Ga0210398_1016228213300021477SoilMKTFVRCGQLFTGRDDDAEAGRTLVFDEAGVILYVGADADAPQRARGDRAFDYSQLFV
Ga0210402_1151644913300021478SoilMRTFVRCGQLFSGREDDARKGEILVFDQQGVIEYAGPEAASPRRARSDQVLD
Ga0210410_1089805023300021479SoilMKSIVRCGQLFTGRENDARADQVLVFDERGVLSYVGPEAGSPRRTRSDRMLDYARYFV
Ga0126371_1013522313300021560Tropical Forest SoilVKTFVRCGHLFTGSEDKAQKGGILVFDEGGILDYVGPDKTAPR
Ga0242664_111723813300022527SoilMRTFVRCGQFFSGREDDAHRGEILVFDHEGVVEYAGAEAGSPRRARSDQMLD
Ga0242671_106197213300022714SoilMRTFVRCGQLFSGREDDALKGEILVFDHQGIIEYAGAEAGSPRRARSDQVLDYSGC
Ga0242661_112725623300022717SoilVTRTFVRCGHLFTGQEDDARAGETLVFDERGTLDYVGPEKGAPRRA
Ga0207665_1023759813300025939Corn, Switchgrass And Miscanthus RhizosphereVTRTFVRCGHLFTGQEDDARAGETLVFDERGTLDYVGPEKGAPRRARND
Ga0257153_106464323300026490SoilMRSFVRCGQLFTGREDDTRADEILVFDERGMLDYVGPEKG
Ga0209059_112283823300026527SoilMRTFVRCGQLFTGREDEARAGDNLIFDERGMLDYVGP
Ga0209447_1014523823300027701Bog Forest SoilMKTFVRCGHLFTGQEDDARKGETLVFDERGALDYVGP
Ga0209655_1023480223300027767Bog Forest SoilMKTIVRCGQLFTGREDEARADETLIFDEQGMLEYVGPEAGSPRRARG
Ga0209448_1009882123300027783Bog Forest SoilMKTFVRCGQLFTGSEDDARAGQTFVFDEEGVVDYVGADEGAPRRVRGDRMLDYSGAFV
Ga0308309_1072394823300028906SoilMRTLVRCGQLFSGREDDARKGEILVFDQQGVIEYAGPEAASP
Ga0102760_1044028013300031039SoilMKTFVRCGELFTGREDEARPAGMLVFDERGSIEYAGAEAGSPRRARARPTS
Ga0170819_1490899323300031469Forest SoilVTKTFVRCGHLFSGHEDDLRTGETLVFDERGMLDYVGPEK
Ga0318541_1042429523300031545SoilMKTFVHCGQLFTGQEDDARTGAILVFDETGVIEHVGPD
Ga0318538_1003964633300031546SoilMKTFVRCGHLFTGKEDEARAGETLVFDERGTLDYVGPEK
Ga0318528_1011146613300031561SoilMKTFVRCGHLFTGREDEARAGETLVFDERGTLDYVG
Ga0318515_1053337223300031572SoilMKTFVRCGHLFTGKEDEARAGETLVFDERGTLDYVGPE
Ga0310915_1088962923300031573SoilMKTFVRCGHLFTGREDEPRTGETLVFDERGTLDYV
Ga0318542_1033073213300031668SoilMKTFVRCGHLFTGHEDEARPSETLVFDERGTLDYV
Ga0318561_1084460523300031679SoilMKTFVRCGQLFTGNEDDARPGQTLVFDGDGVIDYVGAAEEAPRRLRG
Ga0318574_1007429813300031680SoilMKTCVRCGHLFTGHEDEARKGQTLVFDERGTLDYVGPEKNAPRRSRNDRL
Ga0310686_11513364513300031708SoilMKTFVRCGQLFTGREDDAQAGQTLVFDEEGVLGYVGAEGGAPRRMRGDRVLDY
Ga0318496_1058152213300031713SoilMKTFVRCGHLFTGRENEARSGATLVFDEHGTIDYVGLEKNAPRRARNDRLLDY
Ga0318501_1041777023300031736SoilMKTFVRCGQLFTGREDAACPGGILSFDERGLIDYA
Ga0307468_10058797213300031740Hardwood Forest SoilMKTFVRCGHLFTGQEDDARDGETLVFDERGMLDYVGP
Ga0306918_1042088823300031744SoilMKTFVRCGQLFTGREDDARSDEILIFDERGMVDYVGLEAGSPRRARGDR
Ga0307477_1075535323300031753Hardwood Forest SoilMKTFVRCGHLFTGHEDEARKGETLVFDERGTLDYVGAEKNAPRR
Ga0318509_1038865413300031768SoilMKTFVRCGHLFTGKEDEARAGETLVFDERGTLDYVGPEKNAPRRAR
Ga0318526_1048074113300031769SoilMKTFVRCGQLFTGREDDARADEILVFDEYGLLDYVGPEKGSPRRVRADKV
Ga0318546_1020613123300031771SoilMETFVRCGHLFTGREDEARAGETLVFDERGTLDYVG
Ga0318546_1075499113300031771SoilMKTFVRCGHLFTGREDEARTGETLVFDERGNIDYAG
Ga0318529_1055605423300031792SoilMRTLIRCGQLFTGREDDARAGEILVFDERGVLDYVGPAAGSPR
Ga0318548_1065166313300031793SoilMKTFVRCGQLFTGREDDARSDEILIFDERGMVDYVG
Ga0318503_1009364013300031794SoilMKTFVRCGHLFTGHEDEARPSETLVFDERGTLDYVGPEKGAPRRARNDRLLDY
Ga0318576_1003241913300031796SoilMKTFVRCGHLFTGREDEARSGATLVFDERGTIDYVGLEKNAPRRARSD
Ga0318576_1026044013300031796SoilMKTFVRCGHLFTGKEDEARAGETLVFDERGTLDYVGPEKNAPRRARNDHV
Ga0318512_1011316933300031846SoilMKTFVRCGHLFTGRENEARSGATLVFDEHGTIDYVGLEKNAP
Ga0318495_1021533313300031860SoilMKTFVRCGHLFTGREDEARSGETLVFDERGTLDYVGPEKNA
Ga0306925_1045739413300031890SoilMRTLIRCGQLFTGREDDARAGEILVFDERGVLDYVGPAAGS
Ga0318536_1027208313300031893SoilMKTFVRCGQLFTGREDDARSDEILIFDERGMVDYV
Ga0318536_1037244123300031893SoilMKTCVRCGHLFTGHEDEARKGQTLVFDERGTLDYVGPEKNAPRRSRNDRLLDY
Ga0318520_1008336013300031897SoilMKTFVRCGHLFTGRENEARSGATLVFDEHGTIDYV
Ga0318520_1086339013300031897SoilMKTFVRCGQLFTGREDDARVEEILVYDERGTLDYVGPEKGSPRRVRNDRVLDYSGCFVM
Ga0306921_1145130223300031912SoilMKTFVHCGQLFTGQEDDARTGAILVFDETGVIEHVGPDAALPR
Ga0310916_1005179513300031942SoilMKTFVRCGHLFTGREDEARSGATLVFDERGTIDYV
Ga0310916_1174926123300031942SoilMKTFVRCGQLFTGLEDEPRADAVLVFDEHGVIEHVGPGTGPP
Ga0310909_1005487333300031947SoilMKTFVRCGQIFTGREDDARRDEILVFDEEGVLDYVGLEAGSPRRARGDRTLDYSG
Ga0307479_1043541313300031962Hardwood Forest SoilMKTFVRCGHLFTGQEDEARSGETLVFGEDGTLDYVGPEKGASRRA
Ga0318531_1035519313300031981SoilLSVAATSHLFTGREDAARKGETLVFDERGTLDYVGPEKGAPRRARSDSL
Ga0306922_1121818513300032001SoilMKTFVRCGHLFTGKEDEARAGETLVFDERGTLDYVGPEKNAPRRARDDH
Ga0318549_1009267313300032041SoilMKTFVRCGQLFTGREDDARSDEILIFDERGMVDYVGLEAGSPR
Ga0318575_1042151313300032055SoilMKTFVRCGHLFTGREDEARSGETLVFAEHGTLDYVGPEKNAPRRARNDR
Ga0318533_1024049433300032059SoilMKTFVRCGHLFTGTEDEARTDETLVFDESGTLEYVGPEKGGPTY
Ga0318504_1009399613300032063SoilMKTCVRCGHLFTGHEDEARKGQTLVFDERGTLDYVGPEKNAPRRSRNDRLLDYSDYFVMP
Ga0318518_1021678813300032090SoilMKTFVRCGHLFTGREDEARAGETLVFDERGTLDYVGPEK
Ga0318540_1062534913300032094SoilMKTFVRCGHLFTGREDEARAGETLVFDEYGTLDYVGPEKNAPRRARNDRM
Ga0306920_10028741223300032261SoilMRTLVRCGQLFTGREDDARAGEILVFDERGVLDYVGPEAGSPRRARG
Ga0306920_10220390423300032261SoilMRTFVRCGQLFSGREDVARKGEILVFDQHGAIEYAGAEAGSPRRARGDQVLDYSG
Ga0310914_1010726113300033289SoilMRTLVRCGQLFTGREDDARAGEILVFDERGVLDYVGPAAGSPRRAR
Ga0310914_1100046823300033289SoilMKTFVRCGQLFTGREDDARVEEILVYDERGTLDYVGPEKGSPRRVRNDRVLDYSG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.