Metagenome Family F066618

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F066618
Family Type	Metagenome
Number of Sequences	126
Average Sequence Length	86 residues
Representative Sequence	MDKHSRAFGRPGKGKRRRLSTLERKQRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFMTKWRR
Number of Associated Samples	110
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.38 %
% of genes near scaffold ends (potentially truncated)	38.89 %
% of genes from short scaffolds (< 2000 bps)	80.95 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.254 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (36.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.270 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.71% β-sheet: 0.00% Coil/Unstructured: 64.29%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF13517	FG-GAP_3	3.17
PF03548	LolA	3.17
PF00196	GerE	2.38
PF04055	Radical_SAM	2.38
PF13360	PQQ_2	2.38
PF02897	Peptidase_S9_N	2.38
PF00083	Sugar_tr	1.59
PF00072	Response_reg	0.79
PF01882	DUF58	0.79
PF13847	Methyltransf_31	0.79
PF13489	Methyltransf_23	0.79
PF00144	Beta-lactamase	0.79
PF00248	Aldo_ket_red	0.79
PF13181	TPR_8	0.79
PF14534	DUF4440	0.79
PF04519	Bactofilin	0.79
PF00069	Pkinase	0.79
PF01797	Y1_Tnp	0.79
PF00941	FAD_binding_5	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.17
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	3.17
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	2.38
COG1770	Protease II	Amino acid transport and metabolism [E]	2.38
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1721	Uncharacterized conserved protein, DUF58 family, contains vWF domain	Function unknown [S]	0.79
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.79
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.25 %
Unclassified	root	N/A	31.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.25 %
Unclassified	root	N/A	31.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.25 %
Unclassified	root	N/A	31.75 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	46.83 %
Unclassified	root	N/A	31.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.59 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	46.83 %
Unclassified	root	N/A	31.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.75 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	14.29 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3.97 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	11.90 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.38 %
Verrucomicrobia bacterium 13_1_20CM_3_54_17	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1.59 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	1.59 %
Verrucomicrobia bacterium 13_1_20CM_4_54_11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11	0.79 %
Neisseriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	11.90 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.38 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.59 %
Verrucomicrobia bacterium 13_1_20CM_3_54_17	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1.59 %
Neisseria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	0.79 %
Verrucomicrobia bacterium 13_1_20CM_4_54_11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	11.90 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2.38 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.59 %
Verrucomicrobia bacterium 13_1_20CM_3_54_17	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1.59 %
Neisseria mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	0.79 %
Verrucomicrobia bacterium 13_1_20CM_4_54_11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	11.90 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	2.38 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.59 %
Verrucomicrobia bacterium 13_1_20CM_3_54_17	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1.59 %
Neisseria mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	0.79 %
Verrucomicrobia bacterium 13_1_20CM_4_54_11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	11.90 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	2.38 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.59 %
Verrucomicrobia bacterium 13_1_20CM_3_54_17	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1.59 %
Neisseria mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	0.79 %
Verrucomicrobia bacterium 13_1_20CM_4_54_11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16574929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1070	Open in IMG/M
2166559005\|cont_contig00566	All Organisms → cellular organisms → Bacteria	3819	Open in IMG/M
2170459006\|GBPF9FW02I2FUR	Not Available	525	Open in IMG/M
2170459009\|GA8DASG01D5RCH	Not Available	526	Open in IMG/M
2170459010\|GIO7OMY02IMJ4B	Not Available	513	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100383873	Not Available	531	Open in IMG/M
3300000787\|JGI11643J11755_11645846	Not Available	592	Open in IMG/M
3300000890\|JGI11643J12802_11613100	Not Available	503	Open in IMG/M
3300000955\|JGI1027J12803_100712866	Not Available	575	Open in IMG/M
3300002899\|JGIcombinedJ43975_10008186	Not Available	1692	Open in IMG/M
3300003911\|JGI25405J52794_10015410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1501	Open in IMG/M
3300004157\|Ga0062590_100031204	All Organisms → cellular organisms → Bacteria	2702	Open in IMG/M
3300004463\|Ga0063356_104498908	Not Available	600	Open in IMG/M
3300004480\|Ga0062592_101051714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	749	Open in IMG/M
3300005186\|Ga0066676_10195815	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1296	Open in IMG/M
3300005186\|Ga0066676_10362948	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	971	Open in IMG/M
3300005289\|Ga0065704_10669214	Not Available	574	Open in IMG/M
3300005294\|Ga0065705_10840715	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	596	Open in IMG/M
3300005329\|Ga0070683_100375768	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300005332\|Ga0066388_100000199	All Organisms → cellular organisms → Bacteria	24539	Open in IMG/M
3300005332\|Ga0066388_100006160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8533	Open in IMG/M
3300005332\|Ga0066388_100915878	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300005332\|Ga0066388_102589544	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005365\|Ga0070688_101046878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	650	Open in IMG/M
3300005435\|Ga0070714_100927907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	846	Open in IMG/M
3300005436\|Ga0070713_100308880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1458	Open in IMG/M
3300005439\|Ga0070711_101620142	Not Available	566	Open in IMG/M
3300005446\|Ga0066686_10187856	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300005451\|Ga0066681_10616637	Not Available	667	Open in IMG/M
3300005535\|Ga0070684_101821730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	574	Open in IMG/M
3300005536\|Ga0070697_100735009	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300005540\|Ga0066697_10264033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1018	Open in IMG/M
3300005566\|Ga0066693_10059312	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300005569\|Ga0066705_10181824	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1308	Open in IMG/M
3300005586\|Ga0066691_10575263	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300005614\|Ga0068856_102298035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	547	Open in IMG/M
3300005713\|Ga0066905_100293819	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1272	Open in IMG/M
3300005764\|Ga0066903_100000688	All Organisms → cellular organisms → Bacteria	22250	Open in IMG/M
3300005764\|Ga0066903_100017775	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7376	Open in IMG/M
3300005764\|Ga0066903_103434393	Not Available	854	Open in IMG/M
3300005937\|Ga0081455_10003772	All Organisms → cellular organisms → Bacteria	17297	Open in IMG/M
3300005983\|Ga0081540_1013204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5385	Open in IMG/M
3300006034\|Ga0066656_10276241	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1082	Open in IMG/M
3300006049\|Ga0075417_10329938	Not Available	744	Open in IMG/M
3300006796\|Ga0066665_10538824	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	951	Open in IMG/M
3300006844\|Ga0075428_100833138	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300006854\|Ga0075425_102731433	Not Available	544	Open in IMG/M
3300006871\|Ga0075434_102141005	Not Available	564	Open in IMG/M
3300009012\|Ga0066710_102465971	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	753	Open in IMG/M
3300009137\|Ga0066709_100222387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2501	Open in IMG/M
3300010046\|Ga0126384_10066147	Not Available	2551	Open in IMG/M
3300010048\|Ga0126373_10968202	Not Available	916	Open in IMG/M
3300010323\|Ga0134086_10356652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11	579	Open in IMG/M
3300010358\|Ga0126370_10038380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2953	Open in IMG/M
3300010362\|Ga0126377_10200394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1913	Open in IMG/M
3300010362\|Ga0126377_11954007	Not Available	662	Open in IMG/M
3300010371\|Ga0134125_10923454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	958	Open in IMG/M
3300010373\|Ga0134128_10204296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	2223	Open in IMG/M
3300010373\|Ga0134128_12821644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	535	Open in IMG/M
3300010376\|Ga0126381_100969495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1226	Open in IMG/M
3300010397\|Ga0134124_11860731	Not Available	637	Open in IMG/M
3300010398\|Ga0126383_10752441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1055	Open in IMG/M
3300012198\|Ga0137364_10448177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	968	Open in IMG/M
3300012200\|Ga0137382_10274846	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1171	Open in IMG/M
3300012201\|Ga0137365_10039794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3590	Open in IMG/M
3300012204\|Ga0137374_10256718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1461	Open in IMG/M
3300012205\|Ga0137362_10777090	Not Available	821	Open in IMG/M
3300012208\|Ga0137376_10073706	All Organisms → cellular organisms → Bacteria	2849	Open in IMG/M
3300012208\|Ga0137376_10826448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	797	Open in IMG/M
3300012209\|Ga0137379_10869966	Not Available	806	Open in IMG/M
3300012349\|Ga0137387_10927937	Not Available	628	Open in IMG/M
3300012351\|Ga0137386_10572090	Not Available	813	Open in IMG/M
3300012355\|Ga0137369_10747290	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300012360\|Ga0137375_10128015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2524	Open in IMG/M
3300012532\|Ga0137373_10243829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1454	Open in IMG/M
3300012532\|Ga0137373_10579451	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300012683\|Ga0137398_10025488	All Organisms → cellular organisms → Bacteria	3276	Open in IMG/M
3300012896\|Ga0157303_10005992	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300012918\|Ga0137396_10400124	Not Available	1018	Open in IMG/M
3300012924\|Ga0137413_10003320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6980	Open in IMG/M
3300012925\|Ga0137419_10867181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	742	Open in IMG/M
3300012927\|Ga0137416_10512269	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1035	Open in IMG/M
3300012927\|Ga0137416_10591841	Not Available	965	Open in IMG/M
3300012929\|Ga0137404_10304245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1384	Open in IMG/M
3300012971\|Ga0126369_10663876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1118	Open in IMG/M
3300012971\|Ga0126369_11703112	Not Available	720	Open in IMG/M
3300013297\|Ga0157378_10479571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1239	Open in IMG/M
3300015200\|Ga0173480_10416934	Not Available	784	Open in IMG/M
3300015371\|Ga0132258_10071352	All Organisms → cellular organisms → Bacteria	8055	Open in IMG/M
3300015371\|Ga0132258_12331889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1342	Open in IMG/M
3300015374\|Ga0132255_103611637	Not Available	658	Open in IMG/M
3300017947\|Ga0187785_10305751	Not Available	733	Open in IMG/M
3300018000\|Ga0184604_10000084	All Organisms → cellular organisms → Bacteria → Proteobacteria	6558	Open in IMG/M
3300018051\|Ga0184620_10235333	Not Available	613	Open in IMG/M
3300018054\|Ga0184621_10170108	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300018061\|Ga0184619_10061577	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1646	Open in IMG/M
3300018482\|Ga0066669_10561807	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	995	Open in IMG/M
3300018482\|Ga0066669_11536826	Not Available	606	Open in IMG/M
3300019877\|Ga0193722_1000160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	14537	Open in IMG/M
3300019881\|Ga0193707_1025554	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1943	Open in IMG/M
3300019885\|Ga0193747_1040462	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300019887\|Ga0193729_1018889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3007	Open in IMG/M
3300019888\|Ga0193751_1026707	All Organisms → cellular organisms → Bacteria	2766	Open in IMG/M
3300019890\|Ga0193728_1114943	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300019996\|Ga0193693_1054206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	633	Open in IMG/M
3300020001\|Ga0193731_1173549	Not Available	515	Open in IMG/M
3300020010\|Ga0193749_1080532	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300020018\|Ga0193721_1116161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	676	Open in IMG/M
3300020021\|Ga0193726_1018698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3551	Open in IMG/M
3300020059\|Ga0193745_1044856	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300021413\|Ga0193750_1095878	Not Available	515	Open in IMG/M
3300022756\|Ga0222622_10883507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	655	Open in IMG/M
3300025290\|Ga0207673_1059545	Not Available	543	Open in IMG/M
3300025916\|Ga0207663_11155742	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	623	Open in IMG/M
3300025920\|Ga0207649_11409779	Not Available	551	Open in IMG/M
3300027548\|Ga0209523_1132006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	515	Open in IMG/M
3300027903\|Ga0209488_10715269	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300028536\|Ga0137415_10069726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3379	Open in IMG/M
3300028536\|Ga0137415_10544403	Not Available	970	Open in IMG/M
3300028711\|Ga0307293_10133962	Not Available	789	Open in IMG/M
3300031231\|Ga0170824_105466247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	662	Open in IMG/M
3300031231\|Ga0170824_105471955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	649	Open in IMG/M
3300031446\|Ga0170820_13461315	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1710	Open in IMG/M
3300031469\|Ga0170819_13683602	Not Available	625	Open in IMG/M
3300031716\|Ga0310813_10880333	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300031740\|Ga0307468_100751557	Not Available	824	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.51%
Host-Associated	Host-Associated	12.70%
Engineered	Engineered	0.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.54%
Plants	Host-Associated → Plants	12.70%
Aquatic	Environmental → Aquatic	3.97%
Modeled	Engineered → Modeled	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Sediment	Environmental → Aquatic → Sediment	3.97%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.25%
Loam	Environmental → Terrestrial → Soil → Loam	13.49%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.17%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.38%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03922690	2088090014	Soil	MDKHSRAFDRPGKGKRKRLYTLERKRRSAKEVIPDQLVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR
cont_0566.00000130	2166559005	Simulated	MDKHSRASGRPGKGKRRRLSTLEKKQRSGNEVVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR
L01_06114880	2170459006	Grass Soil	PCHRARMDKHSRASGRPGKGKRRRLSTLEKKQRSGNEVVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR
F47_00842950	2170459009	Grass Soil	MDKHSRAYVRPPKGKRRRLSTLEKKQRSGSEVVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR
F62_03945340	2170459010	Grass Soil	RMDKHSRASGRPQKGKRRRLSTLEKKQRSGSEVIPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR
INPhiseqgaiiFebDRAFT_1003838731	3300000364	Soil	MDKHSRAFGRPGKGKRRRFSTLKRKLPSEKEVVPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR*
JGI11643J11755_116458462	3300000787	Soil	MDKHSRAFDRPGKGKRKRLSTLERKRRSAKEVIPDQLVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYTAALLSFMAKWRR*
JGI11643J12802_116131002	3300000890	Soil	MDKHSRAFGRPGKGKRRRLSTLERNPRSGKEAIPDQLVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYTAALLSFMAKWRR*
JGI1027J12803_1007128661	3300000955	Soil	KRRRLSTPKRKPRSEKQDTPDELVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYTAAVSAFMAKWRR*
JGIcombinedJ43975_100081862	3300002899	Soil	MDKHSRAFGRPGKGKRRRLSTPKRKPRSEKQDTPDELVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYTAAVSAFMAKWRR*
JGI25405J52794_100154103	3300003911	Tabebuia Heterophylla Rhizosphere	MAKHSQAFGRSKKVKRRRLSTSVRKRRAQTEAVPDQLVEMAMDAIRDGQSTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRQR*
Ga0062590_1000312041	3300004157	Soil	MDKHSRAFGRPGKGKRRRLSTLKRKPRSEKQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYAAAVSAFMAKWRR*
Ga0063356_1044989082	3300004463	Arabidopsis Thaliana Rhizosphere	MDKHSRAFGRPGKGKRRRLPTIERKRCSGKQVIPDPLVELATDAIRDGQTTVETFIAPFHPDLRFKAFRAYAAAMFAFMAKWRR*
Ga0062592_1010517142	3300004480	Soil	MDKHSRAFGRPGKGKRRRLSTLKRKPRSEKQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYAAA
Ga0066676_101958152	3300005186	Soil	MDKHSRVFRRPGKGKRKRLSTLKRKPRSEKQVVPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYTAAVSAFMAKWRR*
Ga0066676_103629481	3300005186	Soil	MDKHSHAVGRPGKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR*
Ga0065704_106692142	3300005289	Switchgrass Rhizosphere	FRSRISEIITQVEKLRNLGLQLWPKARHKARMDKHSRAFGRPGKGKRRRLSTLERKRRSGKEAIPNQLVEFATDAIRDGQTTVATFLAPFHPDLRFRAFRAYTAALFAFMAKWRR*
Ga0065705_108407151	3300005294	Switchgrass Rhizosphere	MDKHSHAVRRPVKGKRRRLSTLKRKRSPGKEVLPDELVELATDAIRDGHTTVATFLAPFHPDLKFTAFRAYAAAMLA
Ga0070683_1003757684	3300005329	Corn Rhizosphere	LQPSPKARYNGQMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0066388_1000001999	3300005332	Tropical Forest Soil	MHKHSPAFRRPEKGKRRRLSTPERKQRSEKQAVPDQLVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYTAAMFAFMAKWRR*
Ga0066388_10000616013	3300005332	Tropical Forest Soil	MNKHSHVFGRPGKGKRRRVSTLEIKQRSEKEVVPDQLVELATDAIKDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMGKWRR*
Ga0066388_1009158783	3300005332	Tropical Forest Soil	MDKHSRAFGKPAKGKRRRLSTLKKESPSEKQVVSDELVELATDAIRDGHTTVATFLAPFHPDLRFKAFRAYAAAVSAFMAKWRP*
Ga0066388_1025895441	3300005332	Tropical Forest Soil	MNKHSRAFGRPGKGKRRHLSTLERNRRSAKEAIPDQLVELATDAIGDGHTTVATFLAPFHPDLRFTAFRGYTAALLSFMAKWQR*
Ga0070688_1010468782	3300005365	Switchgrass Rhizosphere	IGSTRLSHLESERSRDLDLQLSPKARYNGRMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0070714_1009279073	3300005435	Agricultural Soil	MDKHSRAFGRPGKGKRRRLPTIERKRCSGKQVIPDPLVELATDAIRDGQTTVETFIAPFHPDLRFKAFRAYAAAMFAFMAKWRR
Ga0070713_1003088804	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDTHSHAFGRPGKGKRRRLSTVERKQRSGKEVIPDQLVDLATDAIRDGHSTVATFLAPFHPDLKFTAFQAYAAAMLAFMKKWRR*
Ga0070711_1016201421	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RLSHLESKRSRDLDLQPSPKARYNGQMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0066686_101878561	3300005446	Soil	MDKHSRASGRPDKGKRRRLSTIKRKPRSEKQVIPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVS
Ga0066681_106166372	3300005451	Soil	AAHKARMDKHSHAVGRPAKGKRRRPSTRKRKQSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRH*
Ga0070684_1018217301	3300005535	Corn Rhizosphere	MDKHSPAFGRPGKGKRRRLSTLKEKPPSEAQDTPDQLIELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYAAAVSAFMAKWRR*
Ga0070697_1007350092	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDKHSRAFGRPGKGKRKRLSTLERKQRPEKRVTPDPLVDLATDAIRDGQTTVATFLAPFHPDLRFKAFRAYAAAMLAFMAKWRR*
Ga0066697_102640331	3300005540	Soil	CHKTRMDKHSRASGRPDKGKRRRLSTIKRKPRSEKQVIPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR*
Ga0066693_100593122	3300005566	Soil	MDKHSHAVGRPAKGKRRRPSTLKRKQSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR*
Ga0066705_101818241	3300005569	Soil	RIGEITESWVRRSQDFGLQWRPKPRHKTRMNKHSRAFSRLGKGKRRHLPSIERKQPPGKQVNSDPLVELATDAIRDGQSTVATFLAPFHPDLRFKAFRAYTAAMFAFMAKWRR*
Ga0066691_105752632	3300005586	Soil	IRCNSVIELARVEGLRNLGLQLWPKAAHKARMDKHSRAVGRPGKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR*
Ga0068856_1022980352	3300005614	Corn Rhizosphere	KARYNGQMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0066905_1002938191	3300005713	Tropical Forest Soil	MNKQSHAFGRPGKEKRRRPSTLERKQHSEKEVIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0066903_10000068823	3300005764	Tropical Forest Soil	MHKHSRAFGGPGKEKRRRLSTLERKQRCEKEVIPEQLVELATDAIRDGRTTVATFLAPFHPDLKFTAFRAYTAAMLAFMAKWRR*
Ga0066903_1000177753	3300005764	Tropical Forest Soil	MDKHSHAFDRPRKGKRRRLSTLERKRRSEKEAVPDQLVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYTAALLAFMAKWRR*
Ga0066903_1034343931	3300005764	Tropical Forest Soil	MNKHSHAFGRPGKGKRRRVSTLEIKQRSEKEIVPDQLVELATDAIKDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMGKWRR*
Ga0081455_1000377219	3300005937	Tabebuia Heterophylla Rhizosphere	MAKHSQAFGRPKKVKRRHLSTPVRKRRAETEAIPDQLVEMAMDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRQR*
Ga0081540_10132047	3300005983	Tabebuia Heterophylla Rhizosphere	MDKHSRAFGRPGKGKRRRLSTPERKRRSEKEVIPDQLVDFATDAIRDGQTTVATFLALFHPDLRFRAFRAYTAAVSAYMAKWRR*
Ga0066656_102762411	3300006034	Soil	RFGLAMEAQITHKAQMDKHSRAFGRPGKGKRRRLPTNERKQPPGKQVISDPLVELATDAIRDGQTTVATFLAPFHPDLRFKAFRAYAAAMLAFMAKWRR*
Ga0075417_103299381	3300006049	Populus Rhizosphere	DKHSRAFGRPGKGKRRRFSTLKRKLASEKEVVPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR*
Ga0066665_105388242	3300006796	Soil	MDKHSHAVGRPDKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR*
Ga0075428_1008331381	3300006844	Populus Rhizosphere	MDKHSRAFGRPGKGKRRRFSTLKRKLASEKEVVPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR*
Ga0075425_1027314331	3300006854	Populus Rhizosphere	MDKHSRAFGRPGKGKRRRLSTLKRKRRSGKEAIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0075434_1021410051	3300006871	Populus Rhizosphere	GGCHKTGMDKHSHALARPGKGKRRRLSTLKRKPRSEKEGVPDQLVELATDAIRDGHTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWQR*
Ga0066710_1024659712	3300009012	Grasslands Soil	MDKHSHAVGRPGKGKRRRPSTLKRKRSSGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAF
Ga0066709_1002223873	3300009137	Grasslands Soil	MDKHSHAVGRPDKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRH*
Ga0126384_100661474	3300010046	Tropical Forest Soil	MEKHSPAFRRPKKGKRRRLSTLGKKKHSEQHVVPDELVELATDAIRDGHTTVATFLAPFHPDLRFNAFRAYAAAVSAFMAKWRRR*
Ga0126373_109682022	3300010048	Tropical Forest Soil	MDKHSPALRRPGKGKRRRLPTLKRKSRSEKQAAPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYAAAVSAFMAKWRR*
Ga0134086_103566521	3300010323	Grasslands Soil	LPFWPGRCHKTRMDKHSRASGRPDKGKRRRLSTIKRKPRSEKQVIPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR*
Ga0126370_100383801	3300010358	Tropical Forest Soil	VFGRPGKGKRRRVSTLEIKQRSEKEVVPDQLVELATDAIKDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMGKWRR*
Ga0126377_102003943	3300010362	Tropical Forest Soil	MNKQSHAFGRPGKEKRRRLSTLERKQHSEKEVIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0126377_119540072	3300010362	Tropical Forest Soil	MNKHSHAFGRPGKGKRRRLSTLERKQHSEKQVVPDQLVELATDAIKDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMGKWRR*
Ga0134125_109234542	3300010371	Terrestrial Soil	MGEAIGSTRLSHLESKRSRDLDLQPSPKARYNGQMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0134128_102042962	3300010373	Terrestrial Soil	MDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0134128_128216442	3300010373	Terrestrial Soil	MDKHSRAFGRPGKGKRRRLPTIERKRCSGKQVIPDPLVELATDAIRDGQTTVETFIAPFHPDLRFKAFRAYAAAMFAFM
Ga0126381_1009694951	3300010376	Tropical Forest Soil	RMNKHSLAFGRPGKGKRKRLSTLKRKARSEKEVIPDHLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYAAAVSAFMAKWRR*
Ga0134124_118607312	3300010397	Terrestrial Soil	SHAVRRPGKGKRRRLSTLKRKRSPAKEVPPDDLVELATDAIRDGHTTVATFLAPFHPDLKFTAFRAYAAAMLAFMPKWRR*
Ga0126383_107524411	3300010398	Tropical Forest Soil	MNKHSHAFGQPGKEKRRRRSTLERKQHSEKEVIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRP*
Ga0137364_104481773	3300012198	Vadose Zone Soil	MDKHSHAVGRPDKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAA
Ga0137382_102748462	3300012200	Vadose Zone Soil	MDKHSHAVGRPGKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0137365_100397944	3300012201	Vadose Zone Soil	MDKHSRAFGRPVKGKRRRPSTHERKRRSGKEAIPDELVELARDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0137374_102567184	3300012204	Vadose Zone Soil	MDKHSRASGRPGKGKRRRLSTLKRKPRSGKEAIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMTKWRR*
Ga0137362_107770901	3300012205	Vadose Zone Soil	GLRNLGLQLWPKAAHKARMDKHSHAAGRPGKGKRRRPSTLKRKRSPGKEVIPDELVELATDAIRDGHTTVATFLAPFHPDLKFRAFRAYAAAMLAFMPKRRR*
Ga0137376_100737064	3300012208	Vadose Zone Soil	MDKHSRAFGRPGKGKRRRLSTLKGKPPSETQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYTAAVSAFMAKWRRLTPSARPPGRR*
Ga0137376_108264482	3300012208	Vadose Zone Soil	MDKHSHAVGRPGKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRH*
Ga0137379_108699661	3300012209	Vadose Zone Soil	MDKHSRAFGRPVKGKRRRPFTHERKRRSGKEAIPDELVELARDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0137387_109279372	3300012349	Vadose Zone Soil	MDKHSHAVGRPGKGKRRRPSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR*
Ga0137386_105720902	3300012351	Vadose Zone Soil	EGLRNLGLQLWPKAAHKARMDKHSHAVGRPDKGKRRRLSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRH*
Ga0137369_107472901	3300012355	Vadose Zone Soil	HKARMDKHSRASGRPGKGKRRRYSTLKRKPRSGKEAIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMAKWRR*
Ga0137375_101280156	3300012360	Vadose Zone Soil	MDKHSRASGRPGKGKRRRHSTLKRKPRSGKEAIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMAKWRR*
Ga0137373_102438291	3300012532	Vadose Zone Soil	MDKHSRAFGRPVKGKRRRPFTHERKRRSGKEAIPDELVELARDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMAKWRR*
Ga0137373_105794511	3300012532	Vadose Zone Soil	MDKHSRASGRPGKGKRRRLSTLKRKPRSGKEAIPDELVELATDAIRDGQTPVATFLAPFHPDLRFTAFRAYAAAMLAFMAKWRR*
Ga0137398_100254882	3300012683	Vadose Zone Soil	MDKHSHAVGRPGKGKRRRPSTLKRKRSPGKEVIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0157303_100059921	3300012896	Soil	KLRNLGLQLWPKARDKARMDKHSRAFGRPGKGKRRRLSTLERNPRSGKEAIPDQLVELATDAIRDGQTTVATFLAPFHPT*
Ga0137396_104001241	3300012918	Vadose Zone Soil	MDKHSRASGRPGKGKRRHLSTLERKRRSGKEVIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0137413_100033202	3300012924	Vadose Zone Soil	VEGDDHLARVEGLRNLGLQLWPKAAHKARMDKHSHAVGRPGKGKRRRPSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0137419_108671811	3300012925	Vadose Zone Soil	MDKHSHAVGRPGKGKRRRPSTLKRKRSPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKRRR*
Ga0137416_105122691	3300012927	Vadose Zone Soil	VEGLRNLGLQLWPKAPHKARMDKHPHAFGRPGKGKRRRPSTLKRKRSHGKEVIPDELVKLATDAIRDGQTTVATFLAPFHPDLKFRAFRAYAAAMLAFMPKRRR*
Ga0137416_105918411	3300012927	Vadose Zone Soil	MPKARHKGRMDKHSRASGRPGKGKRRHLSTLERKRRSGKEAIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0137404_103042451	3300012929	Vadose Zone Soil	MDKHSHAVGRPGKGKRRRLSTLKRKRRPGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR*
Ga0126369_106638762	3300012971	Tropical Forest Soil	MNKHSHAFGRPGKGKRRRVSTLEIKQRTEKEVVPDQLVELATDAIKDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR*
Ga0126369_117031121	3300012971	Tropical Forest Soil	MNKHSHAFGRPGKGKRRRVSTLEIKQRSEKEVVPDQLVELATDAIKDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMGKWRR*
Ga0157378_104795711	3300013297	Miscanthus Rhizosphere	MDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAK
Ga0173480_104169341	3300015200	Soil	MNKHSRAFGRPGKGKRRRLSTLERNPRSGTEAIPDQLVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYTAALLSFMAKWRR*
Ga0132258_100713525	3300015371	Arabidopsis Rhizosphere	MDKHSHAVRRPGKGKRRRLSTLKRKRSPGKEVIPDDLVELATDAIRDGHTTVATFLAPFHPDLKFTAFRAYAAAMLAFMPKWRR*
Ga0132258_123318892	3300015371	Arabidopsis Rhizosphere	MHKHSHAFAQRRKEKRRHLSTPQRKKRAETEAIPDQLVQLAMDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFMPKWRR*
Ga0132255_1036116371	3300015374	Arabidopsis Rhizosphere	AFGRPGKGKRRRLSTLKRKPRSEKQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR*
Ga0187785_103057512	3300017947	Tropical Peatland	AFDRPVKGKRKRTSTLERKQHSKTEVIPDELVDLATDAIRDGHTTVAMFLAPFHPDLRFKAFRAYAAAVSAFMAKWRR
Ga0184604_100000844	3300018000	Groundwater Sediment	MDKHSHAFGPPGKGKRRRLSTLKRKPRSEKQDTPDQLVELATDAIRDGQTTVATFLAPFHPDLRFKAFRAYTAAVSAFMAKWRR
Ga0184620_102353331	3300018051	Groundwater Sediment	PGKGKRRRLSTLKRKPRAEKQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRRVTPSARPRGRRRTAGSRKLG
Ga0184621_101701081	3300018054	Groundwater Sediment	MDKHSRAFGRPGKGKRRRLSTLERKHRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFLTKWRR
Ga0184619_100615771	3300018061	Groundwater Sediment	MDKHSRAFGRPGKGKRRRLSTPERKQRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFMTKWRR
Ga0066669_105618072	3300018482	Grasslands Soil	MDKHSHAVGRPGKGKRRRPSTLKRKRSTGKEVIPDELVELATDAIRDGQTTVATFLAPFHPDMRFTAFRAYAAAMLAFMPKRRR
Ga0066669_115368261	3300018482	Grasslands Soil	MNKHSRAVGRPSKGKRRHLPSVERKQPSGKEVISDPLVELATDAIRVGQTTVATFLAPFHPDLRFKAFRA
Ga0193722_100016012	3300019877	Soil	MDKHSHAVGRPGKGKRRRLSTLKRKRSPGKEVLPDELVELATDAIRDGHTTVATFLAPFHPDLRFRAFRAYAAAMLAFMPKWRR
Ga0193707_10255543	3300019881	Soil	MDKHSRAFGRPGKGKRRRLSTPERKQRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFLTKWRR
Ga0193747_10404622	3300019885	Soil	KRRRLSTLEKKQRSGNEAVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR
Ga0193729_10188892	3300019887	Soil	MDKHSRAFGRPGKGKRRRLSTLERKQRSGKEAIPEELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFLTKWRR
Ga0193751_10267074	3300019888	Soil	MDKHSRDFGTPAKGKRRRLSTLKRKSPSEKQVVSDELVELATDAIRDGHTTVATFLAPFHPDLRFKAFRAYAAAVSAFMAKWRR
Ga0193728_11149433	3300019890	Soil	MDKHSRAFGRPGKGKRRRLSTLERKQRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFLTKWRR
Ga0193693_10542062	3300019996	Soil	MDKHSRAFGRPGKGKRRRLSTLEKKQGSEKEVIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFKAFRAYTAAISAFIAKWRR
Ga0193731_11735492	3300020001	Soil	VEGLRNLGLQLWPKARHKARMDKHSRAFGRPGKGKRRRLSTLEKKQGSEKEVIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFKAFRAYTAAISAFIAKWRR
Ga0193749_10805322	3300020010	Soil	LRNLGLQLWPKARHKARMDKHSRAFGRPGKGKRRRLSTPERKQRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFMTKWRR
Ga0193721_11161611	3300020018	Soil	MDKHSRAFGRPGKGKRRRLSTIERRRRTGKEAVPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFLTKW
Ga0193726_10186984	3300020021	Soil	MDKHSHAVGRPGQGKRRRLSTLKRKRSPGKEVLPDELVELATDAIRDGHTTVATFLAPFHPDLRFRAFRAYAAAMLAFMPKWRR
Ga0193745_10448562	3300020059	Soil	MDKHSRAFGRPGKGKRRRLSTLERKQRSGKEAIPDELVELATDAIRDGHTTVATFLAPFHPDLRFTAFRAYAAAMLAFMTKWRR
Ga0193750_10958781	3300021413	Soil	YHKTQMDKHSRDFGTPAKGKRRRLSTLKRKSPSEKQVVSDELVELATDAIRDGHTTVATFLAPFHPDLRFKAFRAYAAAVSAFMAKWRR
Ga0222622_108835072	3300022756	Groundwater Sediment	MDKHSHAVRRPGKGKRRRLSTLKRKRSPGKEVLQDELVELATDAIRDGHTTVATFLAPFHPDLKFAAFRAYAAAMLAFMPKWRR
Ga0207673_10595452	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	PGKGKRRRLSTLKRKPRSEKQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFRAFRAYAAAVSAFMAKWRR
Ga0207663_111557421	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RLSHPESKRSRDLDLQPSPKARYNGQMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR
Ga0207649_114097791	3300025920	Corn Rhizosphere	MGEAIGSTRLSHLESKRSRDLDLQPSPKARYNGQMDKHSRASGRPGKGKRRHLSTLEKKQQSGKEAIPDQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR
Ga0209523_11320061	3300027548	Forest Soil	MDKHSRAFGGPSKGKRRRLSTLERKQRSGKEVVPDQLVELATDAIRDGQATVATFLAPFHPDLRFTAFR
Ga0209488_107152692	3300027903	Vadose Zone Soil	MPKARHKGRMDKHSRASGRPGKGKRRHLSTLERKRRSGKEAIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTA
Ga0137415_100697262	3300028536	Vadose Zone Soil	MDKHPHAFGRPGKGKRRRPSTLKRKRSHGKEVIPDELVKLATDAIRDGRTTVATFLAPFHPDLKFRAFRAYAAAMLAFMPKRRR
Ga0137415_105444031	3300028536	Vadose Zone Soil	MPKARHKGRMDKHSRASGRPGKGKRRHLSTLERKRRSGKEAIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR
Ga0307293_101339622	3300028711	Soil	MDKHSHAFGPPGKGKRRRLSTLKRKPRSEKQDTPDQLVELATDAIRDGQTTVAMFLAPFHPDLRFKAFRAYTAAVSAFMAKWRRVTPSAR
Ga0170824_1054662471	3300031231	Forest Soil	MDKHSRASGRPGKGKRRRLSTLEKKQRSGNEVVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAI
Ga0170824_1054719551	3300031231	Forest Soil	MDKHSRASVRPPKGKRRRLSTLEKKQRSGSEVISDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFR
Ga0170820_134613153	3300031446	Forest Soil	MDKHSRASGRPGKGKRRQLSTLEKKQRSEKEGIPNQLVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR
Ga0170819_136836021	3300031469	Forest Soil	GKGKRRRLSTLEKKQRSGNEVVPDELVELATDAVRDGHTTVATFLAPFHPDLKFTAFRAYTAAIRAFMAKWRR
Ga0310813_108803332	3300031716	Soil	MNKHSRAFGRPGKGKRRRLSTLERNPRSGKEAIPDQLVELATDAIRDGQTTVATFLAPFHPDLRFTAFRAYTAALLSFMAKWRR
Ga0307468_1007515571	3300031740	Hardwood Forest Soil	MDKHSRASGRPGKGKRRHLSTLERKRRSGKEVIPNELVELATDAIRDGRTTVATFLAPFHPDLRFTAFRAYTAAMLAFMAKWRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066618

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences