Metagenome / Metatranscriptome Family F067018

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067018
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	54 residues
Representative Sequence	MTEKETKPQALALEIEVLEQSCNPGCGTSTTSHKCTCPISISTTGSLFTATTAQ
Number of Associated Samples	79
Number of Associated Scaffolds	97

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.60 %
% of genes near scaffold ends (potentially truncated)	19.05 %
% of genes from short scaffolds (< 2000 bps)	87.30 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.587 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (38.889 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.349 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.95% β-sheet: 0.00% Coil/Unstructured: 78.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 97 Family Scaffolds
PF14028	Lant_dehydr_C	21.65
PF00772	DnaB	2.06
PF08448	PAS_4	1.03
PF07690	MFS_1	1.03
PF01979	Amidohydro_1	1.03
PF00012	HSP70	1.03
PF00583	Acetyltransf_1	1.03
PF00005	ABC_tran	1.03
PF13689	DUF4154	1.03
PF01850	PIN	1.03

COG ID	Name	Functional Category	% Frequency in 97 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	2.06
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	1.03

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.59 %
Unclassified	root	N/A	48.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.59 %
Unclassified	root	N/A	48.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.59 %
Unclassified	root	N/A	48.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.41 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	39.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.41 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	38.10 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001305\|C688J14111_10184538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300002568\|C688J35102_118668700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300002568\|C688J35102_118668700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300002568\|C688J35102_120016254	All Organisms → cellular organisms → Bacteria → Acidobacteria	847	Open in IMG/M
3300003160\|Ga0006779J45831_103122	Not Available	521	Open in IMG/M
3300003544\|Ga0007417J51691_1018252	Not Available	585	Open in IMG/M
3300003563\|Ga0007430J51106_102259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300003568\|Ga0006781J51513_1021967	Not Available	560	Open in IMG/M
3300003570\|Ga0007418J51697_1089475	Not Available	663	Open in IMG/M
3300003571\|Ga0007419J51692_1089059	Not Available	504	Open in IMG/M
3300003579\|Ga0007429J51699_1057934	Not Available	657	Open in IMG/M
3300003693\|Ga0032354_1006134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300005332\|Ga0066388_102642424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300005340\|Ga0070689_100840822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300005341\|Ga0070691_10344462	Not Available	826	Open in IMG/M
3300005341\|Ga0070691_10344462	Not Available	826	Open in IMG/M
3300005354\|Ga0070675_102000683	Not Available	534	Open in IMG/M
3300005354\|Ga0070675_102000683	Not Available	534	Open in IMG/M
3300005434\|Ga0070709_10657376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005434\|Ga0070709_10657376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005547\|Ga0070693_100770894	Not Available	710	Open in IMG/M
3300005560\|Ga0066670_10358097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300005560\|Ga0066670_10358097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300005587\|Ga0066654_10028279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2312	Open in IMG/M
3300005587\|Ga0066654_10046698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1893	Open in IMG/M
3300005587\|Ga0066654_10046698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1893	Open in IMG/M
3300005587\|Ga0066654_10113773	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1328	Open in IMG/M
3300005719\|Ga0068861_100657264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	969	Open in IMG/M
3300005764\|Ga0066903_104073269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300006028\|Ga0070717_10613281	Not Available	987	Open in IMG/M
3300006173\|Ga0070716_101850869	Not Available	501	Open in IMG/M
3300006794\|Ga0066658_10842634	Not Available	521	Open in IMG/M
3300006794\|Ga0066658_10842634	Not Available	521	Open in IMG/M
3300006871\|Ga0075434_100012958	All Organisms → cellular organisms → Bacteria	7920	Open in IMG/M
3300009176\|Ga0105242_10689740	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300010065\|Ga0127435_134176	Not Available	637	Open in IMG/M
3300010065\|Ga0127435_134176	Not Available	637	Open in IMG/M
3300010071\|Ga0127477_155040	Not Available	616	Open in IMG/M
3300010086\|Ga0127496_1031375	Not Available	635	Open in IMG/M
3300010094\|Ga0127480_1017610	Not Available	526	Open in IMG/M
3300010095\|Ga0127475_1047933	Not Available	773	Open in IMG/M
3300010106\|Ga0127472_1030168	Not Available	614	Open in IMG/M
3300010113\|Ga0127444_1122246	Not Available	517	Open in IMG/M
3300010121\|Ga0127438_1066547	Not Available	587	Open in IMG/M
3300010123\|Ga0127479_1014452	Not Available	527	Open in IMG/M
3300010123\|Ga0127479_1019936	Not Available	673	Open in IMG/M
3300010123\|Ga0127479_1154620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300010125\|Ga0127443_1043834	Not Available	613	Open in IMG/M
3300010140\|Ga0127456_1226015	Not Available	590	Open in IMG/M
3300010143\|Ga0126322_1320086	Not Available	553	Open in IMG/M
3300010143\|Ga0126322_1320086	Not Available	553	Open in IMG/M
3300010152\|Ga0126318_10424630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300010152\|Ga0126318_10424630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300010371\|Ga0134125_10000065	All Organisms → cellular organisms → Bacteria	162849	Open in IMG/M
3300010397\|Ga0134124_10300994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1495	Open in IMG/M
3300010400\|Ga0134122_10302192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1374	Open in IMG/M
3300010400\|Ga0134122_10302192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1374	Open in IMG/M
3300010400\|Ga0134122_10413770	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300010400\|Ga0134122_10413770	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300010401\|Ga0134121_10001697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20323	Open in IMG/M
3300010401\|Ga0134121_13175415	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300012212\|Ga0150985_101478943	Not Available	664	Open in IMG/M
3300012212\|Ga0150985_101478943	Not Available	664	Open in IMG/M
3300012212\|Ga0150985_101910087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300012212\|Ga0150985_101910087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300012212\|Ga0150985_103356329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300012212\|Ga0150985_109907017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1364	Open in IMG/M
3300012212\|Ga0150985_118921921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1297	Open in IMG/M
3300012212\|Ga0150985_118921921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1297	Open in IMG/M
3300012212\|Ga0150985_121837490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300012212\|Ga0150985_121837490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300012372\|Ga0134037_1197178	Not Available	629	Open in IMG/M
3300012372\|Ga0134037_1197178	Not Available	629	Open in IMG/M
3300012372\|Ga0134037_1197178	Not Available	629	Open in IMG/M
3300012373\|Ga0134042_1102357	Not Available	572	Open in IMG/M
3300012373\|Ga0134042_1102357	Not Available	572	Open in IMG/M
3300012376\|Ga0134032_1172656	Not Available	525	Open in IMG/M
3300012382\|Ga0134038_1207544	Not Available	715	Open in IMG/M
3300012386\|Ga0134046_1173484	Not Available	546	Open in IMG/M
3300012386\|Ga0134046_1173484	Not Available	546	Open in IMG/M
3300012387\|Ga0134030_1120648	Not Available	528	Open in IMG/M
3300012391\|Ga0134035_1223818	Not Available	721	Open in IMG/M
3300012397\|Ga0134056_1178487	Not Available	600	Open in IMG/M
3300012410\|Ga0134060_1266586	Not Available	944	Open in IMG/M
3300012469\|Ga0150984_108441801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1054	Open in IMG/M
3300012469\|Ga0150984_113341475	Not Available	587	Open in IMG/M
3300012469\|Ga0150984_113341475	Not Available	587	Open in IMG/M
3300012469\|Ga0150984_113941298	Not Available	634	Open in IMG/M
3300012986\|Ga0164304_10032842	All Organisms → cellular organisms → Bacteria	2674	Open in IMG/M
3300012989\|Ga0164305_12098836	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300014326\|Ga0157380_10068899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2853	Open in IMG/M
3300014326\|Ga0157380_10068899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2853	Open in IMG/M
3300015358\|Ga0134089_10513335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300018431\|Ga0066655_10009796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4100	Open in IMG/M
3300018431\|Ga0066655_10009796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4100	Open in IMG/M
3300018431\|Ga0066655_10231240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300018431\|Ga0066655_10231240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300018431\|Ga0066655_10276841	Not Available	1084	Open in IMG/M
3300018433\|Ga0066667_10700066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300018468\|Ga0066662_10380602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1230	Open in IMG/M
3300018468\|Ga0066662_10380602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1230	Open in IMG/M
3300021339\|Ga0193706_1000006	All Organisms → cellular organisms → Bacteria	463413	Open in IMG/M
3300022527\|Ga0242664_1092717	Not Available	611	Open in IMG/M
3300022533\|Ga0242662_10158212	Not Available	690	Open in IMG/M
3300022533\|Ga0242662_10158212	Not Available	690	Open in IMG/M
3300023268\|Ga0247765_1002462	All Organisms → cellular organisms → Bacteria	6738	Open in IMG/M
3300023268\|Ga0247765_1119328	Not Available	563	Open in IMG/M
3300025918\|Ga0207662_10723932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300025926\|Ga0207659_11360628	Not Available	609	Open in IMG/M
3300025926\|Ga0207659_11360628	Not Available	609	Open in IMG/M
3300026118\|Ga0207675_101995295	Not Available	598	Open in IMG/M
3300026308\|Ga0209265_1209910	Not Available	528	Open in IMG/M
3300027524\|Ga0208998_1015700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300028379\|Ga0268266_10001566	All Organisms → cellular organisms → Bacteria	26749	Open in IMG/M
3300031039\|Ga0102760_10831828	Not Available	509	Open in IMG/M
3300031039\|Ga0102760_10831828	Not Available	509	Open in IMG/M
3300031091\|Ga0308201_10243287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300031093\|Ga0308197_10309533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300031152\|Ga0307501_10105366	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300031938\|Ga0308175_100421517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1400	Open in IMG/M
3300031938\|Ga0308175_100421517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1400	Open in IMG/M
3300032074\|Ga0308173_10126757	All Organisms → cellular organisms → Bacteria → Proteobacteria	2030	Open in IMG/M
3300032174\|Ga0307470_10000344	All Organisms → cellular organisms → Bacteria	25983	Open in IMG/M
3300032174\|Ga0307470_10009406	All Organisms → cellular organisms → Bacteria	3985	Open in IMG/M
3300034268\|Ga0372943_0139806	Not Available	1463	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.02%
Host-Associated	Host-Associated	26.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.84%
Plants	Host-Associated → Plants	26.98%
Aquatic	Environmental → Aquatic	3.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.70%
Freshwater	Environmental → Aquatic → Freshwater	3.17%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.56%
Loam	Environmental → Terrestrial → Soil → Loam	12.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	11.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.52%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.38%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	11.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.35%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.17%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.17%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.38%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.59%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	22.22%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	11.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.14%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.76%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.59%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.59%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003160	Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_22 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003544	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003563	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_46 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003568	Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_24 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003570	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_34 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003571	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_35 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003579	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003693	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010065	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010071	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010086	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010094	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010095	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010113	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010121	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010123	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010125	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010143	Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012382	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012386	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012387	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023268	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300027524	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031039	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J14111_101845382	3300001305	Soil	MTERESKPQALSLEIQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAQ*
C688J35102_1186687002	3300002568	Soil	MTEKETKPQALSLEIQELEVWCNPGCGSSTTSNRCTCPISATTTGSLFTANTAK*
C688J35102_1186687003	3300002568	Soil	MNEKTQAKPLALEIEVLEQTCNPGCGTSTTSHKCTCPVSISTAGS
C688J35102_1200162542	3300002568	Soil	MALKPETKAKALSLEIEELEVSCNPGCGTSSTHRLCTCPISASTTASLFTARTVK*
Ga0006779J45831_1031222	3300003160	Avena Fatua Rhizosphere	MTEKQTKPQALSLEVQELESWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTSS*
Ga0007417J51691_10182522	3300003544	Avena Fatua Rhizosphere	MNEQTKPQALALEIEVLEQVCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0007430J51106_1022591	3300003563	Avena Fatua Rhizosphere	ALALEIEVLEQVCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0006781J51513_10219671	3300003568	Avena Fatua Rhizosphere	MTEKETRPQALSLEIQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAR*
Ga0007418J51697_10894752	3300003570	Avena Fatua Rhizosphere	MAQKPETKSKALNLEVESLETYCNPGCGSSSTDPRCTCPISASTTASLFTARTAS*
Ga0007419J51692_10890591	3300003571	Avena Fatua Rhizosphere	MTQKPETKSKALSLEVEAVETYCNPGCGSSTTSNLCTCPIHLTTTGSLFTARTVS*
Ga0007429J51699_10579342	3300003579	Avena Fatua Rhizosphere	MTEKETKPQALSLEIQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAR*
Ga0032354_10061341	3300003693	Avena Fatua Rhizosphere	MAQKTEVKPKALELEIEELEVSCNPGCGSSTTSRLCTCPISASTTSSLFTAKTVR*
Ga0066388_1026424241	3300005332	Tropical Forest Soil	MTEKETKPQALSLEIQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAG*
Ga0070689_1008408222	3300005340	Switchgrass Rhizosphere	MHKNPERKPQALSLEVEALEQSCNPGCGSSTTSNKCTCPISISTTGSLFTATATS*
Ga0070691_103444621	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MAQKVETKPKALNLEIEELEIICNPGCGTSTTSHRCTCPISATTTGSLFTARATS*
Ga0070691_103444622	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MAQKMETKPKALNLEIEELEVSCNPGCGTSSTHRLCTCPISASTTASLFTARTTR*
Ga0070675_1020006831	3300005354	Miscanthus Rhizosphere	MAQKMENKPKALNLEIEELEVSCNPGCGSSSTNRLCTCPISASTTASLFTARTTR*
Ga0070675_1020006832	3300005354	Miscanthus Rhizosphere	MAQKVETKPKALNLEVEELEIICNPGCGTSTTSHKCTCPISATTTGSLFTARVTN*
Ga0070709_106573762	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTVKETRPHALSLEIQELEAYCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAQ*
Ga0070709_106573763	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MVQQENKPQALALEVEVIEMSCNPGCGTSTTSHLCTCPISASTTGSLFTSKTSQ*
Ga0070693_1007708941	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTERKNAEKALPLNLEVEEIEQHCNPGCGTSTTSRACTCPITASTTGSLFTAKTAG*
Ga0066670_103580971	3300005560	Soil	MNEKTEAKPQALALEVEVLEQSCNPGCGTSTTSRKCTCPISISTAGSLFTAMTAQ*
Ga0066670_103580972	3300005560	Soil	MTEKESKPQALSLEVQELEAWCNPGCGSSTTSNKCTCPISATTTGSLFTANTAR*
Ga0066654_100282793	3300005587	Soil	MDQKQDTKPQALSLEVQEIETWCNPGCGSSTTSNKCTCPISITTTGSLFTAKTTS*
Ga0066654_100466981	3300005587	Soil	WEHESSHPPKEKQMTQKPETKSKALSLEVEAIETYCNPGCGSSSTDPRCTCPIRLTTTASLFTARTVS*
Ga0066654_100466983	3300005587	Soil	MAQQKPETKSKALNLEVEILEMHCNPGCGSSSTDPRCTCPISASTTASLFTARTTR*
Ga0066654_101137732	3300005587	Soil	MSRQKSPEKALPPTPLSLEVESLEAFCNPGCGTSTTSNKCTCPISATTTGSLFTAKATS*
Ga0068861_1006572641	3300005719	Switchgrass Rhizosphere	MAQKVETKPKALNLEVEELEIICNPGCGTSTTSHRCTCPISATTTGSLFTARATS*
Ga0066903_1040732691	3300005764	Tropical Forest Soil	MTEKEINKPPVLALEIEVLEQSCNPGCGTSSTNPKCTCPISISTAGSLFTSRTVG*
Ga0070717_106132812	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPEKTHVKPTPLLDLEVQELEAFCNPGCGTSSTHPGCTCPISATTTASLFTAKTAS*
Ga0070716_1018508691	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKDTKTSAKPIAALDLEVQEIESWCNPGCNTSSTNPACTCPIRVTTTASLFTAKTVS*
Ga0066658_108426341	3300006794	Soil	MTEKETKPQALALEIEVLEQVCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0066658_108426342	3300006794	Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTSS*
Ga0075434_1000129583	3300006871	Populus Rhizosphere	MTQKTETKAKALNLEVEALEMFCNPGCGSSSTNPRCTCPISISTTASLFTARTTS*
Ga0068865_1008148772	3300006881	Miscanthus Rhizosphere	MTEKETKPQALALEIEVLEQTCNPGCGSSTTSNRCTC
Ga0105242_106897401	3300009176	Miscanthus Rhizosphere	MHKNPERKPQALSLEVEALEQSCNPGCGSSTTSNKCTCPISISTTGSLFTPTATS*
Ga0127435_1341762	3300010065	Grasslands Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTSQ*
Ga0127435_1341763	3300010065	Grasslands Soil	MVQQENKPQPLSLEVEVIEQSCHPGCGTSTTSHLCTCPISSSTVGSLFTA
Ga0127477_1550402	3300010071	Grasslands Soil	MNEKTQAKPLALEIEVLEQVCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0127496_10313752	3300010086	Grasslands Soil	MNDQTQAKPLALEIEVLEQSCNPGCGTSTTSHRCTCPISISTAGSLFTSKTVA*
Ga0127480_10176101	3300010094	Grasslands Soil	KPIALDLEVQEIEAFGATGCNSSTTSSRCTCRPITGDLFTAKAAG*
Ga0127475_10479331	3300010095	Grasslands Soil	HESSHPPKEKQMTQKPETKSKALSLEVEAIETYCNPGCGSSSTDPRCTCPIRLTTTASLFTARTVS*
Ga0127472_10301682	3300010106	Grasslands Soil	MNEKTEAKPQALALEIEVLEQSCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0127444_11222462	3300010113	Grasslands Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTATTTS*
Ga0127438_10665472	3300010121	Grasslands Soil	MNDQTQAKPLALEIEVLEQVCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0127479_10144521	3300010123	Grasslands Soil	PKPIALDLEVQEIEAFGATGCNSSTTSSRCTCRPITGDLFTAKAAG*
Ga0127479_10199361	3300010123	Grasslands Soil	KESKPQALSLEVQELEAWCNPGCGSSTTSNRCTCPISATTTGSLFTANTAK*
Ga0127479_11546201	3300010123	Grasslands Soil	MTQKNETKAKALNLEVDAVETYCKPGCGSSTTSNLCTCPIRLTTTASLFTARTIS*
Ga0127443_10438343	3300010125	Grasslands Soil	MVQNENKPQPLSLEIEVIEQSCNPGCGTSTTSHRCTCPVSVSTA
Ga0127456_12260152	3300010140	Grasslands Soil	MNEKTEAKPQALALEIEVLEQSCNPGCGTSTTSHKCTCPVSITTTGSLFTANTAK*
Ga0126322_13200861	3300010143	Soil	MTEKETRPHALSLEIQELEAYCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAQ*
Ga0126322_13200862	3300010143	Soil	MIQQENKPQALALEVEVIEQSCNPGCGTSTTSHLCTCPVSASTAGSLFTATTTN*
Ga0126318_104246301	3300010152	Soil	MTEKGTKPQALALEVQALEIFCNPGCGTSTTSSRCTCAVGITTTGSLFTGKTSQ*
Ga0126318_104246302	3300010152	Soil	MSPKIENRPQALSLEIQELEAFCNPGCGTSSTRAGCTCPISASTLGSLFTSKTSQ*
Ga0134125_1000006590	3300010371	Terrestrial Soil	MAQKTEVKPKALDLEIEELEVSCNPGCGTSSTHRLCTCPISASTTASLFTARTVK*
Ga0134124_103009943	3300010397	Terrestrial Soil	MTEKETKPQALALEIQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAQ*
Ga0134122_103021921	3300010400	Terrestrial Soil	MTQKVETKSKALNLEIEELEVSCNPGCGTSSTHRLCTCPISASTTASLFTARTTR*
Ga0134122_103021922	3300010400	Terrestrial Soil	MAKKVESKPKALNLEVEELEIICNPGCGTSTTSHRCTCPISATTTGSLFTARATS*
Ga0134122_104137701	3300010400	Terrestrial Soil	MAQKVEAKPKALNLEVEELEIICNPGCGTSTTSHKCTCPISLTTTGSLFTARATN*
Ga0134122_104137702	3300010400	Terrestrial Soil	MAQKVTTKPKALELEIEELELSCNPGCGTSSTHRLCTCPISASTTASLFTARTTR*
Ga0134121_100016972	3300010401	Terrestrial Soil	MTQKTETKSKALNLEVEALEMFCNPGCGSSSTNPKCTCPISISTTASLFTARTTS*
Ga0134121_131754152	3300010401	Terrestrial Soil	MNQKPETKSKALNLEVEELEVVCNPGCGTSTTSFRCTCPISVTTTGSLFTSRTIS*
Ga0150985_1014789431	3300012212	Avena Fatua Rhizosphere	MAQKMENKPKALNLEIEELEVSCNPGCGSSSTSRLCTCPISASTTASLFTARTTR*
Ga0150985_1014789432	3300012212	Avena Fatua Rhizosphere	MPQKTEIKPKALNLEVEELEIVCSPGCGTSTTSSRCTCPISCTTTGSLFTARATN*
Ga0150985_1019100872	3300012212	Avena Fatua Rhizosphere	MTEKETKPQALSLEIQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAS*
Ga0150985_1019100873	3300012212	Avena Fatua Rhizosphere	MTEKETRPQALALEIEVLEQSCNPGCGTSTTSHKCTCPISITTTGSLFTAQTAQ*
Ga0150985_1033563292	3300012212	Avena Fatua Rhizosphere	MTEKETKPQALSLEVQEIEAWCNPGCGSSTTSNRCTCPISITTTGSLFTAKTAG*
Ga0150985_1099070171	3300012212	Avena Fatua Rhizosphere	MALKPETKAKALSLEIEELEVSCNPGCGTSSTHRLCTCPISASTPASLFTARTVK*
Ga0150985_1189219213	3300012212	Avena Fatua Rhizosphere	MKDTETSVKPPALDLEVQELEAWCNPGCDSSTTSPRCDCPVRLTTAASLLTAQTAR*
Ga0150985_1189219214	3300012212	Avena Fatua Rhizosphere	MKDTKTSAKPLALDLEVQEIEAWCNPGCGTSTTSHACTCPIRVTTTASLFTAKTAS*
Ga0150985_1218374901	3300012212	Avena Fatua Rhizosphere	TAPPFQKGAHMAQKVETKSKALNLEIEELEVSCNPGCGTSSTHRLCTCPISASTTASLFTARTTR*
Ga0150985_1218374902	3300012212	Avena Fatua Rhizosphere	MSQKVESKPKALNLEVEELEIICNPGCGTSTTSHKCTCPISATTTGSLFTARATS*
Ga0134037_11971782	3300012372	Grasslands Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSTTSNRCTCPISATTTGSLFTANTAK*
Ga0134037_11971783	3300012372	Grasslands Soil	MNDQTQAKPLALEIEVLEQSCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0134037_11971784	3300012372	Grasslands Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSK
Ga0134042_11023571	3300012373	Grasslands Soil	MTEKESKPQALSLEVQELEAWCNPGCGSSTTSNRCTCPISATTTGSLFTANTAK*
Ga0134042_11023573	3300012373	Grasslands Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFT
Ga0134032_11726561	3300012376	Grasslands Soil	IALDLEVQEIEAFGATGCNSSTTSSRCTCRPITGDLFTAKAAG*
Ga0134038_12075443	3300012382	Grasslands Soil	MTEKQTKPQALSLEVQELEAWCNPGCGSSSTDPRCTCPISISTTGSLFTSKTAR*
Ga0134046_11734842	3300012386	Grasslands Soil	MNDQTQAKPLALEIEVLEQSCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQYIERSSP
Ga0134046_11734843	3300012386	Grasslands Soil	MTEKQTKPQALSLEVQELESWCNPGCGSSSTDPRCTCPISIST
Ga0134030_11206483	3300012387	Grasslands Soil	MNDQTQAKPLALEIEVLEQSCNPGCGTSTTSHRCTCPISISTAGSLFTAMTAQ*
Ga0134035_12238181	3300012391	Grasslands Soil	KSKALNLEVDAVETYCNPGCGSSTTSNRCTCPIRLTTTASLFTARTVS*
Ga0134056_11784871	3300012397	Grasslands Soil	QKPETKAKALNLEVDAVESYCKPGCGSSTTSNLCTCPVRLTTTASLFTARTVS*
Ga0134060_12665864	3300012410	Grasslands Soil	MNEKTEAKPQALALEVEVLEQSCNPGCGTSTTSRKCTCPISISTAGSLFTSKTVG*
Ga0150984_1084418012	3300012469	Avena Fatua Rhizosphere	MKKTHNPRPQALSLEVEALEQSCNPGCGSSTTSNKCTCPISITTTGSLFTAKTTS*
Ga0150984_1133414751	3300012469	Avena Fatua Rhizosphere	MTEKETKPQALALEIEVLEQSCNPGCGTSTTSHKCTCPISISTTGSLFTATTAQ*
Ga0150984_1133414752	3300012469	Avena Fatua Rhizosphere	MNAKTDNKPQALSLEIQELEVWCNPGCGSSSTNPRCTCPISVSTTGSLFTSKTSQ*
Ga0150984_1139412981	3300012469	Avena Fatua Rhizosphere	RASDRQKEKRMTQKNETKAKALNLEVDAVETYCKPGCGSSTTSNLCTCPIRLTTTASLFTARTIS*
Ga0164304_100328422	3300012986	Soil	MHKNPERKPQALSLEVEALEQSCNPGCGSSTTSIRCTCPVSASTTGSLFTATATR*
Ga0164305_120988361	3300012989	Soil	KVETKSKALNLEIEELEVSCNPGCGSSSTNRLCTCPISASTTASLFTARTTR*
Ga0157380_100688993	3300014326	Switchgrass Rhizosphere	MRDTKTTVRPPALDLEVQELESFCNPGCGSSSTSPRCTCPIRLTTTASLFTAKTTT*
Ga0157380_100688994	3300014326	Switchgrass Rhizosphere	MKETKTSVKPIALDLEVQEIEAHCNPGCGSSTTSRLCTCPISASTTASLFTAKTSS*
Ga0134089_105133352	3300015358	Grasslands Soil	MNEKTQAKPLALEIEVLEQTCNPGCGTSTTSHKCTCPVSISTAGSLFTSKTVG*
Ga0066655_100097963	3300018431	Grasslands Soil	MNEKTEAKPQALALEVEVLEQSCNPGCGTSTTSRKCTCPISISTAGSLFTAMTAQ
Ga0066655_100097964	3300018431	Grasslands Soil	MTEKESKPQALSLEVQELEAWCNPGCGSSTTSNKCTCPISATTTGSLFTANTAR
Ga0066655_102312403	3300018431	Grasslands Soil	MAQQKPETKSKALNLEVEILEMHCNPGCGSSSTDPRCTCPISASTTASLFTARTTR
Ga0066655_102312405	3300018431	Grasslands Soil	MTQKPETKAKALNLEVDAVESYCKPGCGSSTTSNLCTCPVRLTTTASLFTARTAR
Ga0066655_102768412	3300018431	Grasslands Soil	MTQKPETKSKALSLEVEAIETYCNPGCGSSSTDPRCTCPIRLTTTASLFTARTAS
Ga0066667_107000661	3300018433	Grasslands Soil	LMVQNENKPQPLALEVEVIEQSCNPGCGTSTTSHRCTCPVSVSTAGSLFTATTTN
Ga0066662_103806023	3300018468	Grasslands Soil	MAQKTEIKSKALELEIEELEMTCNPGCGSSSTSRLCTCPISASTTASLFTARTTR
Ga0066662_103806025	3300018468	Grasslands Soil	MAQKTEMKSKALNLEVDAVETYCNPGCGSSTTSNRCTCPISLTTTASLFTARTVS
Ga0193706_100000627	3300021339	Soil	MHKNPERKPQALSLEVEALEQTCNPGCGSSTTSNKCTCPISATTAGSLFTATATS
Ga0242664_10927172	3300022527	Soil	MKDTLTTARPTMLNLEVQELEVWCNPGCGTSSTHPACTCPIRVTTTASLFTAKTTD
Ga0242662_101582121	3300022533	Soil	MKDTKTTARPMTLNLEVQELESWCNPGCGTSSTSPRCTCPIQLTTTASLFTARTTD
Ga0242662_101582122	3300022533	Soil	MSEPRPVKPVALDLEVQEIEMFCNPGCNTSTTSPRCTCRPELTTTGSLFTARSTD
Ga0247765_10024624	3300023268	Plant Litter	MHKNPERKPQALSLEVEALEQTCNPGCGTSTTSSKCTCPISISTAGSLFTATATS
Ga0247765_11193281	3300023268	Plant Litter	MKKNPERKPQALSLEVEALEQTCNPGCGTSTTSSRCTCPVSISTAGSLFTATATS
Ga0207662_107239321	3300025918	Switchgrass Rhizosphere	MTEKETKPQALALEIEILEQSCNPGCGTSTTSNKCTCPISISTAGSLFTATATS
Ga0207659_113606281	3300025926	Miscanthus Rhizosphere	MAQKVETKPKALNLEVEELEIICNPGCGTSTTSHKCTCPISATTTGSLFTARVTN
Ga0207659_113606282	3300025926	Miscanthus Rhizosphere	MAQKMENKPKALNLEIEELEVSCNPGCGSSSTNRLCTCPISASTTASLFTARTTR
Ga0207675_1019952951	3300026118	Switchgrass Rhizosphere	MAQKVDTKPKALNLEVEALEMHCNPGCGSSTTSNLCTCPIRLTTTASLFTARTIS
Ga0209265_12099101	3300026308	Soil	MTQKPETKSKALSLEVEAIETYCNPGCGSSSTDPRCTCPIRLTTTA
Ga0208998_10157002	3300027524	Forest Soil	MDQKQDTKPQALSLEVQEIEAWCNPGCGSSTTSNRCTCPISITTTGSLFTAKTTS
Ga0268266_1000156612	3300028379	Switchgrass Rhizosphere	MHKNPERKPQALSLEVEALEQSCNPGCGSSTTSNKCTCPISISTTGSLFTATATS
Ga0102760_108318281	3300031039	Soil	MNEKTETKPQALALEIEVLEQSCNPGCGTSSTSSRCTCPISISTAGSLFTATTTS
Ga0102760_108318282	3300031039	Soil	MTEKETKPQALSLEVQEIETWCNPGCGSSTTSNKCTCPISITTTGSLFTANTAK
Ga0308201_102432872	3300031091	Soil	MQKNPERKPQALSLEVEALEQSCNPGCGSSTTSNKCTCPISISTTGSLFTATATS
Ga0308197_103095331	3300031093	Soil	APDRKRRNPMAQKTEVKPKALDLEIEELEVSCNPGCGSSTTSRLCTCPISASTTSSLFTAKTVR
Ga0307501_101053662	3300031152	Soil	MNQNHDKKPQALSLEVEALEQSCNPGCGSSTTSNKCTCPISISTTGSLFTATAT
Ga0308175_1004215172	3300031938	Soil	MVQNENKPQPLALEVEVIEQSCNPGCGTSTTSHLCTCPISSSTVGSLFTATTTN
Ga0308175_1004215173	3300031938	Soil	MAQQENKPQALALEVEVIEASCNPGCGSSTTSRLCTCPISASTTGSLFTSKTSQ
Ga0308173_101267572	3300032074	Soil	MEKEINKPQPLALEVEVIEQSCNPGCGTSTTSHLCTCPISSSTVGSLFTATTTN
Ga0307470_100003446	3300032174	Hardwood Forest Soil	MKDTKTTVRPLVLDLEVQEIESWCNPGCGSSSTSPLCTCPIRASTTASLFTAKASS
Ga0307470_100094062	3300032174	Hardwood Forest Soil	MKDTKTSARPIALDLEVQEIESWCNPGCGTSSTNPACTCPIRVTTTASLFTAKAGG
Ga0372943_0139806_99_266	3300034268	Soil	MIQKPETKSRALNLEVEQLEVACNPGCNTSTTSRLCTCSVGITTTASLFTARTIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067018

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences