NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F067145

Metagenome / Metatranscriptome Family F067145

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F067145
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 43 residues
Representative Sequence PADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Number of Associated Samples 121
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.59 %
% of genes near scaffold ends (potentially truncated) 97.62 %
% of genes from short scaffolds (< 2000 bps) 86.51 %
Associated GOLD sequencing projects 113
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.873 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.254 % of family members)
Environment Ontology (ENVO) Unclassified
(42.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(50.794 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.90%    β-sheet: 0.00%    Coil/Unstructured: 79.10%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 126 Family Scaffolds
PF02811PHP 22.22
PF03786UxuA 10.32
PF07733DNA_pol3_alpha 8.73
PF00903Glyoxalase 7.94
PF00441Acyl-CoA_dh_1 7.14
PF02771Acyl-CoA_dh_N 4.76
PF12681Glyoxalase_2 3.17
PF01557FAA_hydrolase 2.38
PF12802MarR_2 2.38
PF14579HHH_6 1.59
PF08386Abhydrolase_4 1.59
PF02770Acyl-CoA_dh_M 1.59
PF07167PhaC_N 0.79
PF13359DDE_Tnp_4 0.79
PF13556HTH_30 0.79
PF09900DUF2127 0.79
PF12535Nudix_N 0.79
PF06081ArAE_1 0.79
PF03633Glyco_hydro_65C 0.79
PF13469Sulfotransfer_3 0.79
PF07883Cupin_2 0.79
PF02021UPF0102 0.79
PF03793PASTA 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 126 Family Scaffolds
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 13.49
COG1312D-mannonate dehydrataseCarbohydrate transport and metabolism [G] 10.32
COG0587DNA polymerase III, alpha subunitReplication, recombination and repair [L] 8.73
COG2176DNA polymerase III, alpha subunit (gram-positive type)Replication, recombination and repair [L] 8.73
COG0792Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 familyReplication, recombination and repair [L] 0.79
COG1554Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamilyCarbohydrate transport and metabolism [G] 0.79
COG3243Poly-beta-hydroxybutyrate synthaseLipid transport and metabolism [I] 0.79
COG4129Uncharacterized membrane protein YgaE, UPF0421/DUF939 familyFunction unknown [S] 0.79

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms65.87 %
UnclassifiedrootN/A34.13 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001431|F14TB_103439089Not Available696Open in IMG/M
3300002075|JGI24738J21930_10138045All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia537Open in IMG/M
3300005335|Ga0070666_10870018Not Available665Open in IMG/M
3300005337|Ga0070682_101215862Not Available636Open in IMG/M
3300005339|Ga0070660_101566181Not Available561Open in IMG/M
3300005347|Ga0070668_100220309All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1565Open in IMG/M
3300005356|Ga0070674_101132775Not Available692Open in IMG/M
3300005437|Ga0070710_10669330All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium729Open in IMG/M
3300005457|Ga0070662_100029075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3854Open in IMG/M
3300005543|Ga0070672_100590426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia967Open in IMG/M
3300005544|Ga0070686_100014401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales4560Open in IMG/M
3300005574|Ga0066694_10446124All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300005577|Ga0068857_100047498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea3811Open in IMG/M
3300005764|Ga0066903_108569121Not Available521Open in IMG/M
3300006163|Ga0070715_10690272Not Available608Open in IMG/M
3300006163|Ga0070715_10884726Not Available548Open in IMG/M
3300006237|Ga0097621_100075554All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2793Open in IMG/M
3300006573|Ga0074055_11433138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia605Open in IMG/M
3300006575|Ga0074053_11988428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1002Open in IMG/M
3300006797|Ga0066659_11743994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia526Open in IMG/M
3300006804|Ga0079221_10453474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales815Open in IMG/M
3300006806|Ga0079220_10073005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1697Open in IMG/M
3300006852|Ga0075433_10834657All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria805Open in IMG/M
3300006871|Ga0075434_102563907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia510Open in IMG/M
3300009011|Ga0105251_10012339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4838Open in IMG/M
3300009036|Ga0105244_10136564All Organisms → cellular organisms → Bacteria1181Open in IMG/M
3300009098|Ga0105245_10795598All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia983Open in IMG/M
3300009162|Ga0075423_12496941All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia564Open in IMG/M
3300009177|Ga0105248_11982012Not Available661Open in IMG/M
3300009545|Ga0105237_11999870All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia588Open in IMG/M
3300009553|Ga0105249_10509299All Organisms → cellular organisms → Bacteria1250Open in IMG/M
3300010329|Ga0134111_10149474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia923Open in IMG/M
3300010359|Ga0126376_10764061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia939Open in IMG/M
3300010362|Ga0126377_12672139Not Available574Open in IMG/M
3300010375|Ga0105239_11916580All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300010376|Ga0126381_101492002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia977Open in IMG/M
3300010396|Ga0134126_13054705Not Available505Open in IMG/M
3300010398|Ga0126383_11452440All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300010399|Ga0134127_12495786Not Available597Open in IMG/M
3300012203|Ga0137399_10265090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1412Open in IMG/M
3300012210|Ga0137378_10291758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1517Open in IMG/M
3300012353|Ga0137367_10483350Not Available873Open in IMG/M
3300012359|Ga0137385_10017145All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6456Open in IMG/M
3300012360|Ga0137375_10312999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1413Open in IMG/M
3300012492|Ga0157335_1002992Not Available1056Open in IMG/M
3300012957|Ga0164303_11466224All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia514Open in IMG/M
3300012958|Ga0164299_10051982All Organisms → cellular organisms → Bacteria1920Open in IMG/M
3300012961|Ga0164302_10906341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia677Open in IMG/M
3300013102|Ga0157371_10248905Not Available1279Open in IMG/M
3300013104|Ga0157370_11993867Not Available520Open in IMG/M
3300013105|Ga0157369_11741250Not Available633Open in IMG/M
3300013296|Ga0157374_11490480Not Available700Open in IMG/M
3300013307|Ga0157372_11026098All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia955Open in IMG/M
3300014325|Ga0163163_10596140Not Available1168Open in IMG/M
3300015264|Ga0137403_10144152Not Available2352Open in IMG/M
3300015371|Ga0132258_10611683Not Available2736Open in IMG/M
3300015373|Ga0132257_102023136All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. Ae717_Ps2743Open in IMG/M
3300015373|Ga0132257_102573522Not Available662Open in IMG/M
3300015374|Ga0132255_102451423Not Available797Open in IMG/M
3300016294|Ga0182041_11178025Not Available698Open in IMG/M
3300017792|Ga0163161_10239063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1412Open in IMG/M
3300017947|Ga0187785_10622172Not Available557Open in IMG/M
3300020140|Ga0179590_1031916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1299Open in IMG/M
3300020579|Ga0210407_10387649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1093Open in IMG/M
3300020581|Ga0210399_11459400Not Available532Open in IMG/M
3300021178|Ga0210408_10155221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1813Open in IMG/M
3300021403|Ga0210397_10128335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1748Open in IMG/M
3300021403|Ga0210397_10293810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1191Open in IMG/M
3300021404|Ga0210389_10705722All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia790Open in IMG/M
3300021478|Ga0210402_10470321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1167Open in IMG/M
3300021560|Ga0126371_11997730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia697Open in IMG/M
3300024325|Ga0247678_1003443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2113Open in IMG/M
3300025735|Ga0207713_1134725All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia813Open in IMG/M
3300025898|Ga0207692_10028050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2658Open in IMG/M
3300025899|Ga0207642_10040417All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2035Open in IMG/M
3300025904|Ga0207647_10032275All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3366Open in IMG/M
3300025907|Ga0207645_10174035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1411Open in IMG/M
3300025914|Ga0207671_10409816All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1078Open in IMG/M
3300025917|Ga0207660_10342172Not Available1197Open in IMG/M
3300025918|Ga0207662_10909343Not Available623Open in IMG/M
3300025926|Ga0207659_10599096Not Available939Open in IMG/M
3300025932|Ga0207690_10186077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1567Open in IMG/M
3300025933|Ga0207706_10031186All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4750Open in IMG/M
3300025934|Ga0207686_11411402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia573Open in IMG/M
3300025935|Ga0207709_11089444Not Available656Open in IMG/M
3300025936|Ga0207670_10389800Not Available1111Open in IMG/M
3300025940|Ga0207691_10025646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5533Open in IMG/M
3300025940|Ga0207691_10221873All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1639Open in IMG/M
3300025960|Ga0207651_10179217All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1679Open in IMG/M
3300025961|Ga0207712_11098561Not Available708Open in IMG/M
3300025981|Ga0207640_11382857Not Available630Open in IMG/M
3300026088|Ga0207641_10032137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4357Open in IMG/M
3300026089|Ga0207648_10066461All Organisms → cellular organisms → Bacteria3144Open in IMG/M
3300026475|Ga0257147_1007808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1372Open in IMG/M
3300026538|Ga0209056_10431316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia775Open in IMG/M
3300027371|Ga0209418_1029071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria951Open in IMG/M
3300027884|Ga0209275_10446346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia733Open in IMG/M
3300028138|Ga0247684_1006695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1804Open in IMG/M
3300028138|Ga0247684_1073733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia562Open in IMG/M
3300028711|Ga0307293_10056595All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1222Open in IMG/M
3300028881|Ga0307277_10032144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2093Open in IMG/M
3300028906|Ga0308309_11183616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia659Open in IMG/M
3300030730|Ga0307482_1180296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia632Open in IMG/M
3300031564|Ga0318573_10060491Not Available1871Open in IMG/M
3300031640|Ga0318555_10131391All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1335Open in IMG/M
3300031668|Ga0318542_10358171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia751Open in IMG/M
3300031718|Ga0307474_10679557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia813Open in IMG/M
3300031720|Ga0307469_10898877All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp.820Open in IMG/M
3300031724|Ga0318500_10203579Not Available949Open in IMG/M
3300031740|Ga0307468_100281425Not Available1194Open in IMG/M
3300031771|Ga0318546_11207993Not Available531Open in IMG/M
3300031796|Ga0318576_10082580Not Available1446Open in IMG/M
3300031799|Ga0318565_10122691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1254Open in IMG/M
3300031835|Ga0318517_10424913Not Available600Open in IMG/M
3300031890|Ga0306925_11821495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia582Open in IMG/M
3300031942|Ga0310916_10990761Not Available702Open in IMG/M
3300031954|Ga0306926_11180754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia900Open in IMG/M
3300032039|Ga0318559_10317500Not Available724Open in IMG/M
3300032044|Ga0318558_10176788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1035Open in IMG/M
3300032068|Ga0318553_10348462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria775Open in IMG/M
3300032783|Ga0335079_10430046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1418Open in IMG/M
3300032892|Ga0335081_10927274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1023Open in IMG/M
3300032893|Ga0335069_12040467All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia603Open in IMG/M
3300032954|Ga0335083_10302484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1405Open in IMG/M
3300033004|Ga0335084_11559546Not Available652Open in IMG/M
3300033134|Ga0335073_11263110Not Available734Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.25%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.56%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.97%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.17%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.17%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.17%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.17%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.17%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.17%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.38%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.38%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.38%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.38%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.59%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.59%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.59%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.59%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.79%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.79%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.79%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006575Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009036Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012492Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610Host-AssociatedOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025735Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026475Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-AEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027371Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TB_10343908913300001431SoilEQDGAPVNWGRVTVYEPEDCDERYRQYLEHAPRHTGPTLIPIQV*
JGI24738J21930_1013804513300002075Corn RhizosphereMATQQTDRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070666_1087001823300005335Switchgrass RhizosphereKTREEREQAQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070682_10121586213300005337Corn RhizosphereTRQERARDQDGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070660_10156618123300005339Corn RhizosphereRDQDGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070668_10022030913300005347Switchgrass RhizosphereAQDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070674_10113277523300005356Miscanthus RhizosphereARTRQERARDQDGEPAARGRVTVYEPEDCDERYRQYLEHAPRYTGPTLIPIQV*
Ga0070710_1066933013300005437Corn, Switchgrass And Miscanthus RhizosphereDPAARGRVTIYEPEDCDARWRQHLERTPRRYTGPTLIPIQV*
Ga0070662_10002907513300005457Corn RhizosphereQDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070672_10059042613300005543Miscanthus RhizosphereDGDPADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV*
Ga0070686_10001440113300005544Switchgrass RhizosphereQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0066694_1044612423300005574SoilVPLSPQEPEPDDAPANRGRVTIYEPEDCDERYRQYLEQAPRYTGPKLIPIQV*
Ga0068857_10004749853300005577Corn RhizosphereADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPFQV*
Ga0066903_10856912113300005764Tropical Forest SoilEREHGGDPADRGRVTVYEPEDCDELIRQHLERAPRRIGPVLIPIQV*
Ga0070715_1069027233300006163Corn, Switchgrass And Miscanthus RhizosphereNAKTREERERAQDGDPADRGRVTIYEPEDCDERYRQYLEHAPRHTGPTLIPIQV*
Ga0070715_1088472623300006163Corn, Switchgrass And Miscanthus RhizosphereRVTIYEPEDCDERYRQYLEHAPRYTGPTLIPFQV*
Ga0097621_10007555423300006237Miscanthus RhizosphereDQGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0074055_1143313813300006573SoilRGRVTIYEPEDWPERIRQYEAQTPRSFAPVLVPIPV*
Ga0074053_1198842823300006575SoilDRGRVTVYEPEDWPERHRQYREHTPRRTGPTLIPIQV*
Ga0066659_1174399413300006797SoilDAPATRGRVTIYEPEDCDERWHQHLERTPRRTGPTLIPIQV*
Ga0079221_1045347413300006804Agricultural SoilERERDPDGPPRGRVRIYEPEDCDERWRQYLERTPRRTGPTLIPIPV*
Ga0079220_1007300513300006806Agricultural SoilRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIPV*
Ga0075433_1083465713300006852Populus RhizosphereRVRIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV*
Ga0075434_10256390723300006871Populus RhizosphereDRGRVTIYEPEDCDERYRQYLEDTPRYTGPTLIPIQV*
Ga0105251_1001233913300009011Switchgrass RhizosphereQDDEPAARGRVTVYEPEDCDERYRQYLERTPRYTGPTLIPIQV*
Ga0105244_1013656413300009036Miscanthus RhizosphereGQDGEPAARGRVTVYEPEDCDERYRQYCEDTPRRTGPTLIPIQV*
Ga0105245_1079559823300009098Miscanthus RhizospherePADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0075423_1249694123300009162Populus RhizospherePKSWGDDPATRGRVRIYEPEDCDERWRQHLERTPRRHTGPTLIPIQV*
Ga0105248_1198201213300009177Switchgrass RhizosphereEQAQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0105237_1199987013300009545Corn RhizosphereDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0105249_1050929923300009553Switchgrass RhizosphereTSEEREQDGAPVIPGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0134111_1014947413300010329Grasslands SoilGDLANGGQVRIYAPADCDERWRQHLERTPRRTGPTLIPIQV*
Ga0126376_1076406113300010359Tropical Forest SoilTRHERDHDTDPAGRGRATVYEPEDCEILARQYLDHAPRHTGPVLIPIQV*
Ga0126377_1267213923300010362Tropical Forest SoilARRGHVTVYEPEDCEDLIRQYLEHAPRRTGPVLIPIQV*
Ga0105239_1191658023300010375Corn RhizosphereDRITIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL*
Ga0126381_10149200213300010376Tropical Forest SoilEREQGADPAHRDRVTVYEPEDCAELFRQYLEQAPPRTSPTLIPIQA*
Ga0134126_1305470513300010396Terrestrial SoilTDEQKQADGDQDGDPADRGRVTIYEPEDWPERYRQYCENTPRRTGPTLIPIQV*
Ga0126383_1145244033300010398Tropical Forest SoilPPSRGHVTVYEPEDCEERIRQYLEQAPRRTGPILIPVQV*
Ga0134127_1249578613300010399Terrestrial SoilGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL*
Ga0137399_1026509013300012203Vadose Zone SoilARTKEERDQDRDPGPRGRVRIYEPEDCDERWRQHLERTPRYTGPTLIPIQV*
Ga0137378_1029175823300012210Vadose Zone SoilPRGRVTIYEPEDCDERYRQYLERTPRHTGPTPIPIQV*
Ga0137367_1048335013300012353Vadose Zone SoilDGDPAGRGRVTVYEPEDWPERYRQYREHTPRRTGPTLIPIQV*
Ga0137385_1001714513300012359Vadose Zone SoilREQGQDGDPAGRGRVTVYEPEDWPERYRQYREHTPRRTGPTLIPIQV*
Ga0137375_1031299923300012360Vadose Zone SoilGRVTVYEPEDWPERYRQYREHTPRRTGPTLIPIQV*
Ga0157335_100299213300012492Arabidopsis RhizosphereKSQNRQEPQRDQDSGPADRGRITVYEPEDCDERYRQYLERTPRRIGPTLIPIPV*
Ga0164303_1146622413300012957SoilERGQDGDPADRGRVTIYEPEDCDERYRQYLEHAPRRTGPTLIPIQV*
Ga0164299_1005198233300012958SoilARIKQERERDQDGEPAARGRVTVYEPEDCDERYRQYLEHAPRHTGPILIPIQV*
Ga0164302_1090634123300012961SoilGHVTIYEPEGCDERYRQYLERTPRYTGPTLIPIQV*
Ga0157371_1024890513300013102Corn RhizosphereADRGSVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0157370_1199386713300013104Corn RhizosphereGEPATRGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0157369_1174125023300013105Corn RhizosphereRVTIYEPEDCDERYRQYLEHAPRRSGLTLIPIQL*
Ga0157374_1149048033300013296Miscanthus RhizosphereDRGRVTIYEPEDCDERYRQYLEHAPRHTGPTLIPIQV*
Ga0157372_1102609813300013307Corn RhizosphereDRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV*
Ga0163163_1059614023300014325Switchgrass RhizosphereDGEPAARGRVTVYEPEDCDERYRQYLEHTPRHTGPILIPIQV*
Ga0137403_1014415243300015264Vadose Zone SoilPRGRVRIYEPEDCDERYRQYLERTPRYTGPTLIPIRV*
Ga0132258_1061168313300015371Arabidopsis RhizosphereGVTVYEPEDCDELIRRYLEHAPRRTGPTLIPIPV*
Ga0132257_10202313623300015373Arabidopsis RhizosphereGDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0132257_10257352213300015373Arabidopsis RhizosphereEHGGDPPSRGGVTVYEPEDCDELIRRYLEHAPRRTGPTLIPIPV*
Ga0132255_10245142313300015374Arabidopsis RhizosphereLAKQAQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0182041_1117802523300016294SoilQGGDRASRGRVTVYEPEDCEKLIRQYLEQAPRRTGPVLIPIQV
Ga0163161_1023906323300017792Switchgrass RhizosphereRGQDGDPADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV
Ga0187785_1062217223300017947Tropical PeatlandAGRGDVTVYEPEDCDDLIRQYLEHAPRRTGPVQVPIQV
Ga0179590_103191613300020140Vadose Zone SoilNARTREERDQDRDPAPRGRVRIYEPEDCDERYRQYLERTPRYTGPTLIPIQV
Ga0210407_1038764933300020579SoilGDPVARGRVTIYEPEDWPERIRQYEARTPRSFAPVQVPIQV
Ga0210399_1145940013300020581SoilDRGRVTIYEPEDWPERIRQYEVRTPRSFAPVLVPIQV
Ga0210408_1015522113300021178SoilGDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0210397_1012833533300021403SoilAWGGDPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIPV
Ga0210397_1029381013300021403SoilTSWGDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0210389_1070572213300021404SoilDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0210402_1047032113300021478SoilPKSWGDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0126371_1199773013300021560Tropical Forest SoilGPADRRADVTVYEPEDCDVLVRQYLERAPRRTGPTLIPIQV
Ga0247678_100344323300024325SoilEERERAQDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207713_113472513300025735Switchgrass RhizosphereGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV
Ga0207692_1002805023300025898Corn, Switchgrass And Miscanthus RhizospherePAARGRVTIYEPEDCDARWRQHLERTPRRYTGPTLIPIQV
Ga0207642_1004041723300025899Miscanthus RhizospherePADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207647_1003227543300025904Corn RhizospherePAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207645_1017403513300025907Miscanthus RhizosphereREERDRGQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207671_1040981613300025914Corn RhizosphereNARTKEEEPEQDGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL
Ga0207660_1034217213300025917Corn RhizosphereGDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV
Ga0207662_1090934323300025918Switchgrass RhizosphereRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV
Ga0207659_1059909623300025926Miscanthus RhizosphereAQDDDPADRGSVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207690_1018607713300025932Corn RhizosphereGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207706_1003118653300025933Corn RhizosphereERARDQDGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207686_1141140223300025934Miscanthus RhizosphereREQDGAPVIPGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIPV
Ga0207709_1108944423300025935Miscanthus RhizosphereAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207670_1038980023300025936Switchgrass RhizosphereARDQDGEPATRGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207691_1002564613300025940Miscanthus RhizosphereGDPADQGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207691_1022187313300025940Miscanthus RhizosphereERERGQDGDPADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV
Ga0207651_1017921713300025960Switchgrass RhizosphereARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207712_1109856113300025961Switchgrass RhizosphereSEEREQDGAPVIPGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207640_1138285723300025981Corn RhizosphereRGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207641_1003213753300026088Switchgrass RhizosphereGSVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207648_1006646113300026089Miscanthus RhizosphereQDGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL
Ga0257147_100780813300026475SoilDQDGDPAARGRVTVYEPEDWPERIRQYEARTPRCFAPVLVPIQV
Ga0209056_1043131613300026538SoilEQKQADRDQEGTPAARGRVTIYEPEDCDERYRQYLERAPRRTGPTLIPIQV
Ga0209418_102907113300027371Forest SoilQERERDQDSEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIPV
Ga0209275_1044634613300027884SoilDGPARGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0247684_100669523300028138SoilDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0247684_107373323300028138SoilPPRGRVRIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV
Ga0307293_1005659523300028711SoilADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV
Ga0307277_1003214433300028881SoilGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0308309_1118361613300028906SoilPRGRVRIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV
Ga0307482_118029623300030730Hardwood Forest SoilVVGLGGPDGPPRGRVTIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV
Ga0318573_1006049113300031564SoilTREEREQGGDRASRGRVTVYEPEDCEKLIRQYLEQAPRRTGPVLIPIQV
Ga0318555_1013139113300031640SoilEKQQHPAGPADRRADVTVYEPEDCDERYRQYLEHAPRRTGPTLIPIQV
Ga0318542_1035817113300031668SoilREDREHGDPADRGRVTVYEPEDCEELIRQYLEHAPRRTGPVLIPIQV
Ga0307474_1067955723300031718Hardwood Forest SoilPATRGRVTIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0307469_1089887713300031720Hardwood Forest SoilARTKEEPEQDGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL
Ga0318500_1020357913300031724SoilREDREQDRNDDPVDRGRVTVYEPEDCDDLIHQYLEQAPRRTGPTLVPIQV
Ga0307468_10028142513300031740Hardwood Forest SoilNARTREERDQDGEPAARGRVTVYEPEDCDERYRQYLEHAPRHTGPTLIPIQV
Ga0318546_1120799313300031771SoilGRVTVYEPEDCDELIRQYLDHAPRRTGPTLIPIQV
Ga0318576_1008258023300031796SoilGDRASRGRVTVYEPEDCEELIRQYLEQAPRRTGPVLIPIQV
Ga0318565_1012269123300031799SoilIAQEKQEHPADRRADVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0318517_1042491313300031835SoilGRVMVYEPEDCDDLIHQYLEQAPRRTGPTLVPIQV
Ga0306925_1182149523300031890SoilADRRADVTVYEPEDCNERYRQYLDHAPRRTGPTLIPIQV
Ga0310916_1099076123300031942SoilHPAGPADRRADVTVYEPEDCDELVRQYLERAPRRTGPTLIPIQV
Ga0306926_1118075423300031954SoilAGPADRRADVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0318559_1031750013300032039SoilPADRGRVTVYEPEDCDDLIHQYLEQAPRRTGPTLIPIQV
Ga0318558_1017678813300032044SoilANARTREEREQGGDFAGRGQVTVYEPEDCEELIRQYLEQAPRRTGPVLIPIQV
Ga0318553_1034846213300032068SoilQQHPAGTADRRADVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0335079_1043004613300032783SoilTRDEPEQDGDPPSRDGVTVYEPDDCDKLIRQYLGHAPRRTGPTLIPIQA
Ga0335081_1092727433300032892SoilPPGPADRRAGVTVYEPEDCDELIRQYLEQAPRRTGPTLIPIQV
Ga0335069_1204046723300032893SoilGRGRVTVYEPQDCAERFRQYLGQAPRYTGPTLTPIQV
Ga0335083_1030248443300032954SoilDSDPADRRAGVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0335084_1155954613300033004SoilGRGHVTVYEPEDCEILARQYLDHAPRHTGPTLIPIQV
Ga0335073_1126311013300033134SoilQSGDPPSADSVTVYEPEDCDELIRQYLGHAPRRTGPTLVPIRV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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