Metagenome / Metatranscriptome Family F068614

Basic Information
Family ID	F068614
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	49 residues
Representative Sequence	YLTGGDFRDGQLASESARADLAALTGTLTLLMRRLDPASLGPPPLAAKFT
Number of Associated Samples	110
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.19 %
% of genes from short scaffolds (< 2000 bps)	90.32 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (69.355 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.839 % of family members)
Environment Ontology (ENVO)	Unclassified (33.065 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.387 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.03% β-sheet: 5.13% Coil/Unstructured: 53.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF03330	DPBB_1	5.65
PF08240	ADH_N	4.84
PF00561	Abhydrolase_1	4.03
PF00732	GMC_oxred_N	3.23
PF00296	Bac_luciferase	3.23
PF08402	TOBE_2	3.23
PF02738	MoCoBD_1	3.23
PF13561	adh_short_C2	1.61
PF00389	2-Hacid_dh	1.61
PF03721	UDPG_MGDP_dh_N	1.61
PF01266	DAO	1.61
PF04030	ALO	0.81
PF13458	Peripla_BP_6	0.81
PF00496	SBP_bac_5	0.81
PF13412	HTH_24	0.81
PF07859	Abhydrolase_3	0.81
PF05598	DUF772	0.81
PF09084	NMT1	0.81
PF00270	DEAD	0.81
PF01315	Ald_Xan_dh_C	0.81
PF03992	ABM	0.81
PF00355	Rieske	0.81
PF13522	GATase_6	0.81
PF03328	HpcH_HpaI	0.81
PF13460	NAD_binding_10	0.81
PF04909	Amidohydro_2	0.81
PF08534	Redoxin	0.81
PF05985	EutC	0.81
PF03720	UDPG_MGDP_dh_C	0.81
PF13343	SBP_bac_6	0.81
PF13924	Lipocalin_5	0.81
PF03641	Lysine_decarbox	0.81
PF00817	IMS	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.23
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	3.23
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.61
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.61
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.61
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.61
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	1.61
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.81
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.81
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.81
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.81
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.81
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.81
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.81
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.81
COG4302	Ethanolamine ammonia-lyase, small subunit	Amino acid transport and metabolism [E]	0.81
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.16 %
Unclassified	root	N/A	29.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.16 %
Unclassified	root	N/A	29.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.35 %
Unclassified	root	N/A	29.84 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.81 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.45 %
Unclassified	root	N/A	29.84 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.81 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.94 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.61 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	32.26 %
Unclassified	root	N/A	29.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.23 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.61 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.81 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.81 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.81 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Rhizobium freirei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei	0.81 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Caryophyllales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Amaranthaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.26 %
Unclassified	root	N/A	29.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.61 %
Bosea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae → Bosea	0.81 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	0.81 %
Bathymodiolus thermophilus thioautotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000887\|AL16A1W_10522044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	533	Open in IMG/M
3300004091\|Ga0062387_100621441	Not Available	778	Open in IMG/M
3300004091\|Ga0062387_100713747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300004092\|Ga0062389_100757424	Not Available	1148	Open in IMG/M
3300005167\|Ga0066672_10849521	Not Available	570	Open in IMG/M
3300005177\|Ga0066690_10933720	Not Available	551	Open in IMG/M
3300005353\|Ga0070669_101883185	Not Available	522	Open in IMG/M
3300005356\|Ga0070674_101789916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300005436\|Ga0070713_100095040	Not Available	2570	Open in IMG/M
3300005436\|Ga0070713_101765282	Not Available	600	Open in IMG/M
3300005439\|Ga0070711_100447731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1056	Open in IMG/M
3300005439\|Ga0070711_101228907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300005451\|Ga0066681_10185051	All Organisms → cellular organisms → Bacteria → Proteobacteria	1241	Open in IMG/M
3300005538\|Ga0070731_10465128	All Organisms → cellular organisms → Bacteria → Proteobacteria	842	Open in IMG/M
3300005538\|Ga0070731_10576922	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005560\|Ga0066670_10791127	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005560\|Ga0066670_10831762	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300005602\|Ga0070762_10039654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2558	Open in IMG/M
3300005719\|Ga0068861_102013891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	576	Open in IMG/M
3300005764\|Ga0066903_102497179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300005764\|Ga0066903_102833355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	941	Open in IMG/M
3300006031\|Ga0066651_10787627	Not Available	515	Open in IMG/M
3300006034\|Ga0066656_10512652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300006800\|Ga0066660_11465090	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300006893\|Ga0073928_10361958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1071	Open in IMG/M
3300006954\|Ga0079219_12183214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300009090\|Ga0099827_10591707	All Organisms → cellular organisms → Bacteria → Proteobacteria	956	Open in IMG/M
3300009520\|Ga0116214_1280066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300009792\|Ga0126374_10864766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300010038\|Ga0126315_11272506	Not Available	500	Open in IMG/M
3300010159\|Ga0099796_10234404	Not Available	757	Open in IMG/M
3300010366\|Ga0126379_10941970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300010373\|Ga0134128_10187972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2330	Open in IMG/M
3300010376\|Ga0126381_102229956	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300010396\|Ga0134126_12623660	Not Available	547	Open in IMG/M
3300010397\|Ga0134124_10146323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2103	Open in IMG/M
3300010399\|Ga0134127_12096595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300012199\|Ga0137383_11022303	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012201\|Ga0137365_10239269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1352	Open in IMG/M
3300012203\|Ga0137399_10246884	Not Available	1463	Open in IMG/M
3300012210\|Ga0137378_10548749	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300012212\|Ga0150985_112684915	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300012363\|Ga0137390_10444810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1272	Open in IMG/M
3300012960\|Ga0164301_10298017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300014162\|Ga0181538_10261611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	950	Open in IMG/M
3300014497\|Ga0182008_10205170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1004	Open in IMG/M
3300016270\|Ga0182036_10088395	All Organisms → cellular organisms → Bacteria → Proteobacteria	2072	Open in IMG/M
3300016341\|Ga0182035_11745833	Not Available	563	Open in IMG/M
3300017934\|Ga0187803_10092584	All Organisms → cellular organisms → Bacteria → Proteobacteria	1187	Open in IMG/M
3300017970\|Ga0187783_11224428	Not Available	541	Open in IMG/M
3300018468\|Ga0066662_12071984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300018469\|Ga0190270_10821888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300018482\|Ga0066669_11344793	Not Available	647	Open in IMG/M
3300018482\|Ga0066669_12224510	Not Available	521	Open in IMG/M
3300020580\|Ga0210403_10269400	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae → Bosea	1396	Open in IMG/M
3300021171\|Ga0210405_10960545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300021178\|Ga0210408_10823677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Bathymodiolus thermophilus thioautotrophic gill symbiont	726	Open in IMG/M
3300021439\|Ga0213879_10150838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300021476\|Ga0187846_10096732	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273	Open in IMG/M
3300021476\|Ga0187846_10316638	Not Available	645	Open in IMG/M
3300021478\|Ga0210402_11366597	Not Available	636	Open in IMG/M
3300021560\|Ga0126371_11234389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	883	Open in IMG/M
3300021560\|Ga0126371_13400152	Not Available	537	Open in IMG/M
3300022529\|Ga0242668_1059031	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300022718\|Ga0242675_1047724	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300025907\|Ga0207645_11053036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	550	Open in IMG/M
3300025926\|Ga0207659_10662066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300026312\|Ga0209153_1007978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3305	Open in IMG/M
3300026527\|Ga0209059_1221693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300026552\|Ga0209577_10731770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300026557\|Ga0179587_10954052	Not Available	565	Open in IMG/M
3300027172\|Ga0208098_1026671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300027824\|Ga0209040_10396882	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	642	Open in IMG/M
3300027874\|Ga0209465_10334185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300027903\|Ga0209488_10608026	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300028047\|Ga0209526_10623437	Not Available	688	Open in IMG/M
3300028802\|Ga0307503_10746395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	554	Open in IMG/M
3300030707\|Ga0310038_10182475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1015	Open in IMG/M
3300031231\|Ga0170824_118026403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300031640\|Ga0318555_10124715	Not Available	1370	Open in IMG/M
3300031640\|Ga0318555_10377382	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300031670\|Ga0307374_10547919	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031679\|Ga0318561_10283747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031680\|Ga0318574_10467588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300031681\|Ga0318572_10231011	Not Available	1085	Open in IMG/M
3300031708\|Ga0310686_115297621	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300031723\|Ga0318493_10179210	Not Available	1111	Open in IMG/M
3300031736\|Ga0318501_10480486	Not Available	676	Open in IMG/M
3300031744\|Ga0306918_10319330	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1200	Open in IMG/M
3300031747\|Ga0318502_10687099	Not Available	618	Open in IMG/M
3300031753\|Ga0307477_11097266	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031754\|Ga0307475_10058592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2915	Open in IMG/M
3300031768\|Ga0318509_10054127	Not Available	2055	Open in IMG/M
3300031777\|Ga0318543_10315068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300031779\|Ga0318566_10513511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300031781\|Ga0318547_10154888	All Organisms → cellular organisms → Bacteria → Proteobacteria	1349	Open in IMG/M
3300031782\|Ga0318552_10609481	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300031792\|Ga0318529_10349433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300031805\|Ga0318497_10456659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300031860\|Ga0318495_10094377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1344	Open in IMG/M
3300031879\|Ga0306919_10092862	Not Available	2106	Open in IMG/M
3300031879\|Ga0306919_10279898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1261	Open in IMG/M
3300031893\|Ga0318536_10030132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2534	Open in IMG/M
3300031896\|Ga0318551_10631898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300031896\|Ga0318551_10787899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300031912\|Ga0306921_12288075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300031945\|Ga0310913_10222084	Not Available	1323	Open in IMG/M
3300031947\|Ga0310909_11311808	Not Available	582	Open in IMG/M
3300031959\|Ga0318530_10021133	All Organisms → cellular organisms → Bacteria → Proteobacteria	2240	Open in IMG/M
3300031959\|Ga0318530_10077231	All Organisms → cellular organisms → Bacteria → Proteobacteria	1297	Open in IMG/M
3300031962\|Ga0307479_10732033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300032001\|Ga0306922_10170778	Not Available	2330	Open in IMG/M
3300032001\|Ga0306922_12024317	Not Available	560	Open in IMG/M
3300032025\|Ga0318507_10148810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300032042\|Ga0318545_10027068	All Organisms → cellular organisms → Bacteria → Proteobacteria	1859	Open in IMG/M
3300032044\|Ga0318558_10419407	Not Available	666	Open in IMG/M
3300032054\|Ga0318570_10512561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300032055\|Ga0318575_10121993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1279	Open in IMG/M
3300032059\|Ga0318533_10474656	Not Available	916	Open in IMG/M
3300032060\|Ga0318505_10044457	Not Available	1880	Open in IMG/M
3300032063\|Ga0318504_10230699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	869	Open in IMG/M
3300032076\|Ga0306924_11530333	Not Available	706	Open in IMG/M
3300032261\|Ga0306920_104126853	Not Available	525	Open in IMG/M
3300032895\|Ga0335074_11087945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.35%
Host-Associated	Host-Associated	5.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.71%
Aquatic	Environmental → Aquatic	5.65%
Plants	Host-Associated → Plants	5.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.10%
Freshwater	Environmental → Aquatic → Freshwater	4.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.03%
Cave	Environmental → Terrestrial → Cave	1.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.61%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.61%
Loam	Environmental → Terrestrial → Soil → Loam	8.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.61%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.61%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Clay	Environmental → Terrestrial → Soil → Clay	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.84%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.81%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.06%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.03%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.23%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.61%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.61%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.81%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068614

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL16A1W_105220441	3300000887	Permafrost	YLTGGDFRDGRLTSDSARNDLAALTGTLITLMRGLDPGALGPLPLAAKFT*
Ga0062387_1006214412	3300004091	Bog Forest Soil	VAPTSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPAPLAGKFS*
Ga0062387_1007137471	3300004091	Bog Forest Soil	GVYLTGADFHDGALTSESARKDLAALAKTLLMLLRRLDPALLGPPPLAAKFT*
Ga0062389_1007574241	3300004092	Bog Forest Soil	GQLTAEAARKDLVALAETLLVLLRRLDPSLLRPTPLAGKFS*
Ga0066672_108495211	3300005167	Soil	DFRDGQLVSESARKDMAALTDTLITLRRLDPASLGPLPLAARFT*
Ga0066690_109337201	3300005177	Soil	QLTSDSARADLAALTDTLTLLMRRLGPAALGPPPLAAKFT*
Ga0070669_1018831852	3300005353	Switchgrass Rhizosphere	FGALVAPTGVYVTGGDFQQGRLAAEGARTDLAALTRTLIALSRRLDPAALGPKPLAARFT
Ga0070674_1017899161	3300005356	Miscanthus Rhizosphere	APTSVYITGGDFKDGQLASEGARTDLAALADTLVLLARQLDPHALGPKPLAAKFT*
Ga0070713_1000950404	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DGQLTSEAARNDLSALVETLIMLLHRLDPALLGPAPLAARFT*
Ga0070713_1017652821	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RDGQLTSEAARNDLSALVETLIMLLHRLDPALLGPAPLAARFT*
Ga0070711_1004477311	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GQLASETARSDLAVLCETLITLSRRIDPASLGPLPLAAKFT*
Ga0070711_1012289071	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	APTSVYLTSGDFRDGQLASESARGDLTALSETLITLSRRIDPAALGPLPLAAKFT*
Ga0066681_101850513	3300005451	Soil	SVYLTSGDFRDGQLASETARGDLAALCETLIMLSGRIDPASLGPLPLAAKFT*
Ga0070731_104651282	3300005538	Surface Soil	TSVYVTPGDFKDGQLASEAARNDLAALTRTLITLSHRLDPSSLGPPPLAAKFT*
Ga0070731_105769222	3300005538	Surface Soil	VAPTSVYITGGDFKDGQLTSDSARADLAALVTTLATLARLDRAALGPKPLAARFT*
Ga0066670_107911271	3300005560	Soil	PTSVYLTGGDFRDGRLASEAAQKDLAALTETLVMLARRLDGASLGPVPLAAKFT*
Ga0066670_108317621	3300005560	Soil	YLTGGDFRDGKLASDTALKDLAALTETLITMVRRLSPAELGPPPLAARFS*
Ga0070762_100396541	3300005602	Soil	ALTSESARKHLVALADTLMMLLRRLDPALLGPPPLAAKFT*
Ga0068861_1020138911	3300005719	Switchgrass Rhizosphere	TGGDFQQGRLAAEGARTDLAALTRTLIALSRRLDPAALGPKPLAARFT*
Ga0066903_1024971792	3300005764	Tropical Forest Soil	APTSVYLTSGDFREGQLASEAARSDLAALTDALIKLSHQAGRTGLGPLPLAAKFT*
Ga0066903_1028333551	3300005764	Tropical Forest Soil	APTSVYVTGGDFRDGKLASEPARKDLVALTGTLITLARQLDRTSLGPVPLAAKFT*
Ga0066651_107876272	3300006031	Soil	VYLTGNDFRDGQLASESARADLAALTDTLTVLMRHFDPAALGPLPLAAKFT*
Ga0066656_105126521	3300006034	Soil	ARGDLAALCETLITLSRRIDPASLGPLPLAAKFT*
Ga0066660_114650901	3300006800	Soil	GQLASESARADLAALTDTLTVLMRHFDPAALGPLPLAAKFT*
Ga0073928_103619582	3300006893	Iron-Sulfur Acid Spring	TWFGALTAPTAVYVTGGDFKDGQLASESARKDLAGLVETLVTLMRRLDPAALGPTPLAAKFT*
Ga0079219_121832142	3300006954	Agricultural Soil	YVTGSDFKEGRLASESARADLTALTGTLLTLAKRLDPAMLGPKPLAARFT*
Ga0099827_105917071	3300009090	Vadose Zone Soil	APTSVYLTGGDFRDGQLTAEPARNDLAALTRTLITLLQRLDPSSLGPLPLAAKFT*
Ga0116214_12800662	3300009520	Peatlands Soil	LREVLTWFGALVAPASVYITGGDFKDGQLASESARQDLTALCGTLLTLSRLDPTSLGPKPLAAKFT*
Ga0126374_108647662	3300009792	Tropical Forest Soil	WFGALLAPTSVYLTGGDFQEGRLTAETSRGDLTALTETLITLLRRLDPNTFGPPPLAARFT*
Ga0126315_112725062	3300010038	Serpentine Soil	TSVYVTGGDFKEGRLAAEGARADLTALTRTLITLSRRLDPAALGPKPLAARFT*
Ga0099796_102344042	3300010159	Vadose Zone Soil	YLTGGDFRDGQLASESARADLAALTGTLTLLMRRLDPASLGPPPLAAKFT*
Ga0126379_109419701	3300010366	Tropical Forest Soil	SETARGDLAALAETLVTLARGLDRAALGPLPLAAKFT*
Ga0134128_101879721	3300010373	Terrestrial Soil	ARGDLAALCETLSTLSRRIDPASLGPLPLAAKFT*
Ga0126381_1022299562	3300010376	Tropical Forest Soil	APTSVYVTGGDFRDGKLASESARQDLAALTGTLITLACQLDRTSLGPVPLAAKFT*
Ga0134126_126236602	3300010396	Terrestrial Soil	VYLTGGDFRDGQLTSDTARADLAALTDTLILLIRRLDPAALGPAPLAAKFT*
Ga0134124_101463231	3300010397	Terrestrial Soil	SVYLTSGDFRDGQLASETARGDLAALCETLSTLSRRIDPASLGPLPLAAKFT*
Ga0134127_120965952	3300010399	Terrestrial Soil	VAPTAVYITGGDFNDGQLASESARADLTALTDTLVLLARQLDPAMLGPKPLAAKFT*
Ga0137383_110223033	3300012199	Vadose Zone Soil	VYLTGGDFRDGQLTSEAARNDLAALTRTLITLLQRLDPAALGPLPLAAKFT*
Ga0137365_102392694	3300012201	Vadose Zone Soil	SGDFRDGQLASETARGDLAALCETLIMLSGRIDPASLGPLPLAAKFT*
Ga0137399_102468843	3300012203	Vadose Zone Soil	GQLASESARADLAALTGTLTLLMRRLDPASLGPPPLAAKFT*
Ga0137378_105487492	3300012210	Vadose Zone Soil	YLTGGDFRDGQLAAEPARNDLAALTQTLIMLLQRLDPSSLGPLPLAAKFT*
Ga0150985_1126849152	3300012212	Avena Fatua Rhizosphere	VTGGDFRDGQLTSEGARADLTALTETLVALMRKLDPAALGPRPLAAKFT*
Ga0137390_104448103	3300012363	Vadose Zone Soil	SESARKDLAALTQTLLTLSRLHPGSLGPLPLAARFT*
Ga0164301_102980173	3300012960	Soil	ISGDFRDRQLASETARSDLAVLCETLITLSRRIDPASLGPLPLAAKFT*
Ga0181538_102616111	3300014162	Bog	SVYITGSDFKDGKLASEGAQRDLAALAATLVTLARLDRASLGPTPLAARYT*
Ga0182008_102051701	3300014497	Rhizosphere	ISGDFRDRQLASETARSDLAALCETLIMLLRRIDPASLGPLPLAAKFT*
Ga0182036_100883955	3300016270	Soil	TSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPAPLAGKFS
Ga0182035_117458331	3300016341	Soil	GADFHDGALTSESARKDLNALADTLLMMLRRLDPSLLGPPPLAAKFT
Ga0187803_100925841	3300017934	Freshwater Sediment	TSVYLTGGDFRDGRLAAESARNDLAALTRTLITLLRRLDPSVLGPLPLAAKFT
Ga0187783_112244282	3300017970	Tropical Peatland	GADFRDGQLTSETARQDLAALVDTLRLMLRRLEPTSLGPTPLAGKFT
Ga0066662_120719841	3300018468	Grasslands Soil	LTSGDFRDGQLASETARGDLAALCETLIMLSGRIDPASLGPLPLAAKFT
Ga0190270_108218881	3300018469	Soil	APTGVYVTGGDFKDGQLASESARTDLTALTDTLVLLARHLDPAMLGPKPLAAKFT
Ga0066669_113447932	3300018482	Grasslands Soil	AWFGGLVAPTAIYRTGNDFRDGQLASESARADLAALTGTLTALMRHLDPTALGPLPLAAKFT
Ga0066669_122245101	3300018482	Grasslands Soil	YLTGNDFREGQLTSETARADLAALTDTLTVLMRRLDPAALGPRPLAAKFT
Ga0210403_102694003	3300020580	Soil	GVDFRDGALTSESARKHLVALADTLMMLLRRLDPALLGPPPLAAKFT
Ga0210405_109605451	3300021171	Soil	RQVLGWFGALIAPTAVYITGADFHDGALTSEAARKDLVALAETLVTLLRRLDPTVLGPIPLAAKFT
Ga0210408_108236772	3300021178	Soil	MTGSDFRAGKLASVALTGTLITLARRPDPASLGPIPRAAKFT
Ga0213879_101508382	3300021439	Bulk Soil	TGADFQDGILAAETARKDLMALTNTLLVLLRRLDSALLGPTPLAGKFT
Ga0187846_100967321	3300021476	Biofilm	GQLTAEAARKDLVALAETLLMLLRRLDPALLGPAPLAGKFS
Ga0187846_103166381	3300021476	Biofilm	VYLTAADFRDGELTSQPARAELAALGNTLVVLLRRLGSASLGPTPLAAKFT
Ga0210402_113665972	3300021478	Soil	VAPTAVYLTGGDFRDGQLASESARADLAALAGTLTLLMRHLDPGSLGPPPLAAKFT
Ga0126371_112343891	3300021560	Tropical Forest Soil	VYLTSADFRDGQLAAEAARRDLVALVDTLLLLLRRLEPASLGPTPLAGKFT
Ga0126371_134001521	3300021560	Tropical Forest Soil	ADFHDGRLDAEAARKDLTALTDTLLVLLRRLDPALLGPTPLAGKFT
Ga0242668_10590311	3300022529	Soil	DGALTSESGRKDLVALADTLLMLLRRLDPALLGPPPLAAKFT
Ga0242675_10477241	3300022718	Soil	GALTSESARNDLAALADTLLMLLRRLDPAVLGPPPLAAKFT
Ga0207645_110530362	3300025907	Miscanthus Rhizosphere	GGDFKDGQLVSEGGRTDLTALTDTLVLLARQLDPRALGPKPLAAKFT
Ga0207659_106620661	3300025926	Miscanthus Rhizosphere	GWFGALVAPTAVYLTGGDFKDGKLASESGLKDLAALCDTLVTLAKIEPAALGPIPLAAKF
Ga0209153_10079785	3300026312	Soil	GQLASETARGDLAALSETLITLSARIDPASLGPLPLAAKFT
Ga0209059_12216931	3300026527	Soil	ADFHDGALTSESARKDLLALAETLLTLLRRLDPALLGPPPLAAKFT
Ga0209577_107317701	3300026552	Soil	SGDFRGGQLASETARGDLAALSETLITLSARIDPASLGPLPLAAKFT
Ga0179587_109540521	3300026557	Vadose Zone Soil	APTGVYLTGGDFRDGQLASDSARADLAALTDTLTLLMRRLDPAALGPPPLAAKFT
Ga0208098_10266711	3300027172	Forest Soil	GADFHDGALTSESARKHLVALADTLMMLLRRLDPALLGPPPLAAKFT
Ga0209040_103968822	3300027824	Bog Forest Soil	TSVYLTGGDFRDGKLAAETAREDLVTLSSTLIILALRLDPASLGPVPLAAKFS
Ga0209465_103341853	3300027874	Tropical Forest Soil	SETARGDLAALAETLVTLARGLDRAALGPLPLAAKFT
Ga0209488_106080261	3300027903	Vadose Zone Soil	GGDFRDGQLASEAARNDLAALTRTLITLLQRLDPSSLGPLPLAAKFT
Ga0209526_106234372	3300028047	Forest Soil	LAPTSVYLTGGDFRDGQLASETARKDMAALTDTLIALGRRLDPASLGPPPLAARFT
Ga0307503_107463952	3300028802	Soil	QLASETARNDLAALTGTLITLMRRLDPASLGPSPLAAKFT
Ga0310038_101824751	3300030707	Peatlands Soil	VDWQLREVLTWFGALVAPASVYITGGDFKDGQLASESARQDLTALCGTLLTLSRLDPTSLGPKPLAAKFT
Ga0170824_1180264031	3300031231	Forest Soil	SVYITGGDFKDGQLASESARSDLAALVQTLLILSRLERGSLGPKPLAAKFI
Ga0318555_101247153	3300031640	Soil	TSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318555_103773821	3300031640	Soil	PTSVYLTGADFRDGLLTAEAARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0307374_105479191	3300031670	Soil	FGALVAPTGIYLTGGDFKDGQLASETARKDLASLTGTLLTLAQRLDPSSLGPTPLAARYT
Ga0318561_102837471	3300031679	Soil	YVTGGDFCDGKLVSESTRKDLVALTGTLITLARQLDPASLGPVPLAAKFT
Ga0318574_104675882	3300031680	Soil	VTPTSVYLTGADFLDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318572_102310112	3300031681	Soil	ADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0310686_1152976212	3300031708	Soil	EAAREDLVALAETLVMLLRRLEPTLLGPMPLAAKFT
Ga0318493_101792101	3300031723	Soil	GADFLDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318501_104804861	3300031736	Soil	PTSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPAPLAGKFS
Ga0306918_103193302	3300031744	Soil	ALIAPTSVYLTGADFRDGRLSSESARTDLIALTDTLAILARRLDPASFGPPPLAARFT
Ga0318502_106870991	3300031747	Soil	ALVAPTSVYVTSGDFRDGKLASEAARQDLAALTATLITLARRLDPASLGPVPFAAKFT
Ga0307477_110972662	3300031753	Hardwood Forest Soil	ADFRDGKLVSEGPIKDLTALTLTLVTLARRLDPAALGPAPLAARFT
Ga0307475_100585924	3300031754	Hardwood Forest Soil	ALVAPTSVYLTGADFRDGELTAEGARKDLVALAETLLILVRRLDPALLGPTPLAGKFT
Ga0318509_100541273	3300031768	Soil	FGALVTPTSVYLTGADFRDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318543_103150681	3300031777	Soil	SVYLTGADFREGERKDLVALTETLLMLLRRLDPALLGPTPLAGKFT
Ga0318566_105135113	3300031779	Soil	VYLTGADFLDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318547_101548881	3300031781	Soil	LVAPTSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0318552_106094812	3300031782	Soil	TQLRQVLGWFGALVAPTAVYLTGADFHDGALTSESARKDLNALADTLLMLLRRLDPSLLGPPPLAAKFT
Ga0318529_103494332	3300031792	Soil	YLTGADFRDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318497_104566591	3300031805	Soil	VYLTGADFRDGQLAAEAARTDLVALVDTLLLLLRRLGPASLGPTPLAGKFT
Ga0318495_100943771	3300031860	Soil	TAEGARKDLVALTETLLMLLRRLDPALLGPTPLAGKFT
Ga0306919_100928624	3300031879	Soil	DFLDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0306919_102798981	3300031879	Soil	AEAARRDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0318536_100301321	3300031893	Soil	EGACKDLVALAETLLLLLRRLDPALLGPTPLAGKFT
Ga0318551_106318982	3300031896	Soil	GALVAPTSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0318551_107878992	3300031896	Soil	FGALVAPTSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPTLLGPAPLAGKFS
Ga0306921_122880751	3300031912	Soil	YLTGTDFRDGQLTAEAVRKDLVTLAETLLILLRRLDPALLGPTPLAGKFG
Ga0310913_102220843	3300031945	Soil	DGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0310909_113118081	3300031947	Soil	TGPDFRDGQLAAEAARTDLVALVDTLLLLLRRLESASLGPTPLAGKFT
Ga0318530_100211335	3300031959	Soil	LVAPTSVYITGGDFRDGELASEPARKDLVALTSTLITLARQLEPASLGPVPLAARFT
Ga0318530_100772311	3300031959	Soil	LTAEAARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0307479_107320331	3300031962	Hardwood Forest Soil	GVYLTSADFSDGKLVSEGAIKDLTALTGTLITLARRLDPAALGPAPLAARFT
Ga0306922_101707783	3300032001	Soil	GDFCDGKLVSESTRKDLVALTGTLITLARQLDPASLGPMPLAAKFT
Ga0306922_120243172	3300032001	Soil	GQLATEVARTDLVALVDSLLLLLRRLEPASLGPTPLAGKFT
Ga0318507_101488104	3300032025	Soil	AEGARKDLVALTETLLMLLRRLDPALLGPTPLAGKFT
Ga0318545_100270681	3300032042	Soil	AARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0318558_104194072	3300032044	Soil	VAPTSGYVTGSDFRDGKLASEPARKDLVALTSTLITLARQLEPASLGPVPLAARFT
Ga0318570_105125611	3300032054	Soil	LTGADFRDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318575_101219933	3300032055	Soil	TSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPALLGPTPLAGKFS
Ga0318533_104746562	3300032059	Soil	ALVAPTSVYLTGADFRDGQLTAEAARKDLVALAETLLMLLRRLDPTLLGPAPLAGKFS
Ga0318505_100444574	3300032060	Soil	DFRDGALTSEAARKDLVELTGALVMLLRRLDPTLLGPTPLAAKFT
Ga0318504_102306992	3300032063	Soil	VYVTGGDFRDGKLVSESTRKDLVALTGTLITLARQLDPASLGPMPLAAKFT
Ga0306924_115303332	3300032076	Soil	LTGSDFREGQLTSEPARKDLTALTGTLITLARKLDPASLGPVPLAAKFT
Ga0306920_1041268531	3300032261	Soil	ADFRDGQLAAEAARTDLFALVDTLLLLFRRLEPASLGPTPLAGKFT
Ga0335074_110879451	3300032895	Soil	ALVAPTGVYLTGADFHDGLLSSETARADLLALGETLLSLLRRLDPAALGPIPLAARFT

Hidden Markov Model


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