Metagenome / Metatranscriptome Family F068696

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068696
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	43 residues
Representative Sequence	PPGVDTSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Number of Associated Samples	100
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	98.39 %
% of genes from short scaffolds (< 2000 bps)	85.48 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.387 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.000 % of family members)
Environment Ontology (ENVO)	Unclassified (57.258 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.194 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00528	BPD_transp_1	17.74
PF01613	Flavin_Reduct	11.29
PF02582	DUF155	5.65
PF00196	GerE	4.03
PF00005	ABC_tran	3.23
PF10262	Rdx	2.42
PF08924	DUF1906	2.42
PF00300	His_Phos_1	2.42
PF08402	TOBE_2	1.61
PF13343	SBP_bac_6	1.61
PF04392	ABC_sub_bind	0.81
PF00873	ACR_tran	0.81
PF02775	TPP_enzyme_C	0.81
PF14373	Imm_superinfect	0.81
PF01593	Amino_oxidase	0.81
PF02900	LigB	0.81
PF07978	NIPSNAP	0.81
PF00378	ECH_1	0.81
PF00067	p450	0.81
PF02776	TPP_enzyme_N	0.81
PF04909	Amidohydro_2	0.81
PF00483	NTP_transferase	0.81
PF12867	DinB_2	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	11.29
COG1723	Mitochondrial translation protein, Rmd1/RMND1/DUF155 family	Translation, ribosomal structure and biogenesis [J]	5.65
COG2124	Cytochrome P450	Defense mechanisms [V]	0.81
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.48 %
Unclassified	root	N/A	26.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.68 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.65 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.03 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	3.23 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.61 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.03 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2.42 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.81 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.81 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.03 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2.42 %
unclassified Methylovirgula	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula	0.81 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.81 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.03 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2.42 %
Methylovirgula sp. 4M-Z18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	0.81 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.81 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10040854	Not Available	940	Open in IMG/M
3300003505\|JGIcombinedJ51221_10157207	Not Available	919	Open in IMG/M
3300004635\|Ga0062388_101752072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300005332\|Ga0066388_103735884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	777	Open in IMG/M
3300005439\|Ga0070711_100951937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	735	Open in IMG/M
3300005445\|Ga0070708_102275400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300005552\|Ga0066701_10442081	All Organisms → cellular organisms → Bacteria → Proteobacteria	807	Open in IMG/M
3300005764\|Ga0066903_101259422	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005764\|Ga0066903_101698428	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300006046\|Ga0066652_101184037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	724	Open in IMG/M
3300006755\|Ga0079222_11342324	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300007076\|Ga0075435_101676282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	558	Open in IMG/M
3300010043\|Ga0126380_11748809	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300010154\|Ga0127503_10451614	Not Available	537	Open in IMG/M
3300010361\|Ga0126378_10116347	Not Available	2669	Open in IMG/M
3300010362\|Ga0126377_10978872	Not Available	911	Open in IMG/M
3300010366\|Ga0126379_12644552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	599	Open in IMG/M
3300010376\|Ga0126381_101571809	Not Available	950	Open in IMG/M
3300010376\|Ga0126381_103763426	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300010937\|Ga0137776_1111504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300011120\|Ga0150983_11382150	Not Available	522	Open in IMG/M
3300011120\|Ga0150983_15423821	Not Available	510	Open in IMG/M
3300012202\|Ga0137363_11494542	Not Available	566	Open in IMG/M
3300012209\|Ga0137379_10630692	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300012349\|Ga0137387_10665016	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300012971\|Ga0126369_10440780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1349	Open in IMG/M
3300012971\|Ga0126369_11416281	Not Available	785	Open in IMG/M
3300016270\|Ga0182036_10159836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1614	Open in IMG/M
3300016294\|Ga0182041_10215491	Not Available	1539	Open in IMG/M
3300016294\|Ga0182041_11815030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	566	Open in IMG/M
3300016319\|Ga0182033_10031244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3405	Open in IMG/M
3300016319\|Ga0182033_10277640	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300016341\|Ga0182035_11470261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300016341\|Ga0182035_11837118	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300016341\|Ga0182035_12182499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300016387\|Ga0182040_10040962	All Organisms → cellular organisms → Bacteria → Proteobacteria	2808	Open in IMG/M
3300016387\|Ga0182040_10373666	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300016422\|Ga0182039_10451988	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300017933\|Ga0187801_10480997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300020581\|Ga0210399_11308194	Not Available	570	Open in IMG/M
3300021178\|Ga0210408_11251850	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300021180\|Ga0210396_10917325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300021404\|Ga0210389_10017544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5536	Open in IMG/M
3300021444\|Ga0213878_10161037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	934	Open in IMG/M
3300021478\|Ga0210402_10120276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2373	Open in IMG/M
3300021559\|Ga0210409_10162719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2042	Open in IMG/M
3300022532\|Ga0242655_10004479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2314	Open in IMG/M
3300022717\|Ga0242661_1022191	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300022722\|Ga0242657_1122810	Not Available	661	Open in IMG/M
3300025898\|Ga0207692_10541610	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300026326\|Ga0209801_1019527	All Organisms → cellular organisms → Bacteria	3345	Open in IMG/M
3300026333\|Ga0209158_1022612	All Organisms → cellular organisms → Bacteria	2813	Open in IMG/M
3300026538\|Ga0209056_10267075	Not Available	1205	Open in IMG/M
3300026555\|Ga0179593_1036369	All Organisms → cellular organisms → Bacteria → Proteobacteria	2642	Open in IMG/M
3300027502\|Ga0209622_1041203	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300027698\|Ga0209446_1000391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	9941	Open in IMG/M
3300031231\|Ga0170824_122563014	Not Available	583	Open in IMG/M
3300031231\|Ga0170824_127967104	Not Available	517	Open in IMG/M
3300031446\|Ga0170820_16915322	Not Available	511	Open in IMG/M
3300031469\|Ga0170819_15856973	Not Available	649	Open in IMG/M
3300031543\|Ga0318516_10715276	Not Available	568	Open in IMG/M
3300031572\|Ga0318515_10216891	Not Available	1026	Open in IMG/M
3300031573\|Ga0310915_10517774	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031573\|Ga0310915_10927554	Not Available	609	Open in IMG/M
3300031640\|Ga0318555_10665683	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031679\|Ga0318561_10096503	Not Available	1548	Open in IMG/M
3300031679\|Ga0318561_10191430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1108	Open in IMG/M
3300031679\|Ga0318561_10822899	Not Available	510	Open in IMG/M
3300031682\|Ga0318560_10205901	All Organisms → cellular organisms → Bacteria → Proteobacteria	1052	Open in IMG/M
3300031708\|Ga0310686_101612829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300031719\|Ga0306917_11215081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300031736\|Ga0318501_10016289	All Organisms → cellular organisms → Bacteria → Proteobacteria	3020	Open in IMG/M
3300031736\|Ga0318501_10598967	Not Available	605	Open in IMG/M
3300031747\|Ga0318502_11016306	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031764\|Ga0318535_10568677	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031770\|Ga0318521_10524651	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300031770\|Ga0318521_10854388	Not Available	555	Open in IMG/M
3300031771\|Ga0318546_11022228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	581	Open in IMG/M
3300031779\|Ga0318566_10127699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1256	Open in IMG/M
3300031781\|Ga0318547_10519271	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300031798\|Ga0318523_10004350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5256	Open in IMG/M
3300031799\|Ga0318565_10535578	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031805\|Ga0318497_10709247	Not Available	564	Open in IMG/M
3300031832\|Ga0318499_10394474	Not Available	530	Open in IMG/M
3300031845\|Ga0318511_10164659	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300031880\|Ga0318544_10387009	Not Available	543	Open in IMG/M
3300031890\|Ga0306925_10739135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	1026	Open in IMG/M
3300031890\|Ga0306925_12007534	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031893\|Ga0318536_10253831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	894	Open in IMG/M
3300031894\|Ga0318522_10252862	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031896\|Ga0318551_10539138	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300031897\|Ga0318520_10092392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1684	Open in IMG/M
3300031897\|Ga0318520_10898408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300031910\|Ga0306923_12530331	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031912\|Ga0306921_12563799	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031941\|Ga0310912_10077878	All Organisms → cellular organisms → Bacteria → Proteobacteria	2402	Open in IMG/M
3300031942\|Ga0310916_10045477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3328	Open in IMG/M
3300031946\|Ga0310910_10675298	Not Available	817	Open in IMG/M
3300031946\|Ga0310910_11107886	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031946\|Ga0310910_11229535	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031947\|Ga0310909_10260490	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300031947\|Ga0310909_11623348	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031959\|Ga0318530_10109812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1102	Open in IMG/M
3300031981\|Ga0318531_10057151	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300031981\|Ga0318531_10426853	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300032001\|Ga0306922_10929684	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300032025\|Ga0318507_10204469	Not Available	852	Open in IMG/M
3300032035\|Ga0310911_10891327	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300032039\|Ga0318559_10417721	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300032039\|Ga0318559_10531067	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300032043\|Ga0318556_10563796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	595	Open in IMG/M
3300032055\|Ga0318575_10694059	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300032059\|Ga0318533_10112182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1899	Open in IMG/M
3300032063\|Ga0318504_10136650	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300032063\|Ga0318504_10415381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300032076\|Ga0306924_10726249	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300032090\|Ga0318518_10045994	All Organisms → cellular organisms → Bacteria	2058	Open in IMG/M
3300032090\|Ga0318518_10407876	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300032091\|Ga0318577_10013702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3252	Open in IMG/M
3300032094\|Ga0318540_10605990	Not Available	527	Open in IMG/M
3300032180\|Ga0307471_100641500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300032205\|Ga0307472_100796454	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300033134\|Ga0335073_11245142	Not Available	742	Open in IMG/M
3300033290\|Ga0318519_10041986	Not Available	2238	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.16%
Aquatic	Environmental → Aquatic	4.03%
Plants	Host-Associated → Plants	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.16%
Freshwater	Environmental → Aquatic → Freshwater	3.23%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.48%
Loam	Environmental → Terrestrial → Soil → Loam	8.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.42%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	69.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.61%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100408542	3300001545	Forest Soil	PPGADASYYSARAIEKIFPRDDTWRQTVLPEMYAEELPVAAK*
JGIcombinedJ51221_101572072	3300003505	Forest Soil	AVKTVQTGGSPPGADASYYSARAIEKIFPREDTWRRTVLPEMYAEELPVAAK*
Ga0062388_1017520722	3300004635	Bog Forest Soil	PGVDTSYYSARAIEKIFPRQETWRETVLPEMYAEELPVAAK*
Ga0066388_1037358841	3300005332	Tropical Forest Soil	LLLDAVKTVQAGGNPPGADASYYSARAIEKIFPRHDTWRQTVLPEMYAERIPVAAK*
Ga0070711_1009519372	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PPGVDTSYYSARAIEKIFPREITWRQTVLPEMYAENIPVAAK*
Ga0070708_1022754001	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TDDSYYSARAIEKIFPREITWRETVLPEMYAEEVPIAAK*
Ga0066701_104420811	3300005552	Soil	RRLLLDAVKTVQTGGNPPGADASYYSARAIEKIFPREDTWRRTVLPEMYAEELPVAAK*
Ga0066903_1012594221	3300005764	Tropical Forest Soil	SYYSARAIEKIFPREMTWRDTVLADMYADEFSIAAK*
Ga0066903_1016984284	3300005764	Tropical Forest Soil	DTSYYSARAIEKIFPRHDTWRRTVLPDMYAEELPIAAK*
Ga0066652_1011840372	3300006046	Soil	PPGVDTSYYSARAIEKIFPREITWRETVLPEMYAEDMLVAAK*
Ga0079222_113423242	3300006755	Agricultural Soil	YSARAIEKIFPREITWRETVLPEMYAEENMPVAAK*
Ga0075435_1016762822	3300007076	Populus Rhizosphere	YSARAIERIFPREMTWRETVLPEMYAEELPVAAK*
Ga0126380_117488091	3300010043	Tropical Forest Soil	DTSYYSARAIERIFPREMTWRDTVLPEMYAEELPVTAK*
Ga0127503_104516141	3300010154	Soil	DASYYSARAIEKIFPREDTWRQTVLPEMYAEELPVAAK*
Ga0126378_101163471	3300010361	Tropical Forest Soil	GVDTSYYSARAIEKIFPREMTWRDTVLADMYADEFSIAAK*
Ga0126377_109788721	3300010362	Tropical Forest Soil	SYYSARAIERIFPREMTWRDTVLPEMYAEELPVAAK*
Ga0126379_126445523	3300010366	Tropical Forest Soil	PPGADTSYYSARAIERVFPREMTWRETVLPEMYAEEVPAAAK*
Ga0126381_1015718092	3300010376	Tropical Forest Soil	YSARAIERIFPREMTWRDTVLPEMYAEELPVAAK*
Ga0126381_1037634261	3300010376	Tropical Forest Soil	YSARAIEKIFPREITWRQTVLPEMYAEKVPVGAK*
Ga0137776_11115041	3300010937	Sediment	YYQARAIEKIFPRQETWRDTVLPEMYAEELPVAAK*
Ga0150983_113821501	3300011120	Forest Soil	VDTSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK*
Ga0150983_154238211	3300011120	Forest Soil	DTSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK*
Ga0137363_114945422	3300012202	Vadose Zone Soil	KTVQAGGNPPGVDTSYYSARAIEKIFPRHDTWRQTVLPEMYVERIPVAAK*
Ga0137379_106306923	3300012209	Vadose Zone Soil	EGGNPLGVDTSYYSARAIEKIFPREITWRETVLPDMYAEDIPVAAK*
Ga0137387_106650161	3300012349	Vadose Zone Soil	NPLGVDTSYYSARAIEKIFPREITWRETVLPDMYAEDIPVAAK*
Ga0126369_104407803	3300012971	Tropical Forest Soil	LLDAVKTVQTGGNPPAVDDSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK*
Ga0126369_114162811	3300012971	Tropical Forest Soil	PPGVDTSYYSARAIERIFPREMTWRDTVLPDMYAEELPVAAK*
Ga0182036_101598363	3300016270	Soil	GVDTSYYSARAIEKIFPREITWRETVLPEMYAEEMPIAAK
Ga0182041_102154914	3300016294	Soil	AGGNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0182041_118150301	3300016294	Soil	VDTSYYSARAIEKIFPREITWRETVLPEMYAEDHVPVAAK
Ga0182033_100312441	3300016319	Soil	DTSYYSARAIEKIFPREITWRETVLPEMYAEEMPVAAK
Ga0182033_102776401	3300016319	Soil	RLLLDAVKTVQAGGSPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0182035_114702612	3300016341	Soil	GNPPGADDSYYSARAIEKIFPCHDTWRQTVLPEMYAEELPVAAK
Ga0182035_118371182	3300016341	Soil	RLLLDAVTTVQAGGNPPGVDTSYYSARAIEKIFPRQDTWRQTVLPEMYAEELPVAAK
Ga0182035_121824991	3300016341	Soil	DTSYYSARAIEKIFPRQETWRQTVLPEMYAEELPAAAK
Ga0182040_100409621	3300016387	Soil	SYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0182040_103736661	3300016387	Soil	SYYSARAIEKIFPRHDTWRETVLPEMYAEELPAAAK
Ga0182039_104519883	3300016422	Soil	VTTVQAGGNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYGEALPVAAK
Ga0187801_104809972	3300017933	Freshwater Sediment	GNPPGVDASYYSARAIEKIFPRQETWRETVLPEMYAEELPVAAK
Ga0210399_113081941	3300020581	Soil	VDTSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK
Ga0210408_112518502	3300021178	Soil	VKTVQAGGSPPGVDTSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPAAAK
Ga0210396_109173251	3300021180	Soil	LDAVKTVQAGGNPPGADTSYYSARAIEKVFPRHDTWRQTVLPEMYAEELPVAAK
Ga0210389_100175448	3300021404	Soil	DTSYYSARAIEKIFPREITWRETVLPEMYAEEMPVAVK
Ga0213878_101610371	3300021444	Bulk Soil	PGVDTSYYTARAIEKIFPRQDTWRQTVLPEMYAEEVPIAAK
Ga0210402_101202761	3300021478	Soil	TSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK
Ga0210409_101627191	3300021559	Soil	PPGADASYYSARAIEKIFPREDTWRRTVLPEMYAEELPVAAK
Ga0242655_100044793	3300022532	Soil	DTSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK
Ga0242661_10221912	3300022717	Soil	VQTGGSPPGADASYYSARAIEKIFPRHDTWRQTVLPEMYVERIPLAAK
Ga0242657_11228102	3300022722	Soil	ATRLLLLDAVKTVQAGGSPPGTDTSYYSARAIEKIFPRHETWRQTVLPEMYAEEVPVAAK
Ga0207692_105416103	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PGVDTSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK
Ga0209801_10195276	3300026326	Soil	SYYHARAIEKIFPRSSTWRETVLLEMYADEESVAATTFR
Ga0209158_10226124	3300026333	Soil	PGVDASYYHARAIEKIFPRSSTWRETVLPEMYADDGSLAAVH
Ga0209056_102670751	3300026538	Soil	NPPGADASYYSARAIEKIFPREDTWRRTVLPEMYAEELPVAAK
Ga0179593_10363693	3300026555	Vadose Zone Soil	VQEGGDPLGVDTSYYSARAIEKIFPREITWRETVLPEMYAEDMPVAAK
Ga0209622_10412031	3300027502	Forest Soil	VDTSYYSARAIERIFPREMTWRETVLPEMYAEEQPVAAK
Ga0209446_10003911	3300027698	Bog Forest Soil	DSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0170824_1225630142	3300031231	Forest Soil	DAVKTVQAGGNPPGADASYYSARAIEKIFPREDTWRRTVLPEMYAERIPVAAK
Ga0170824_1279671041	3300031231	Forest Soil	DSYYAARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0170820_169153221	3300031446	Forest Soil	YYAARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0170819_158569731	3300031469	Forest Soil	LDAVKTVQTGGNPPGVDDSYYAARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0318516_107152761	3300031543	Soil	NSYYSARAIEKIFPRHDTWRQTVLPEMYAEELAVAPK
Ga0318515_102168911	3300031572	Soil	NPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0310915_105177742	3300031573	Soil	DTSYYSARAIEKIFPRRDTWRRTVLPEMYAEELPVAAK
Ga0310915_109275541	3300031573	Soil	GNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0318555_106656831	3300031640	Soil	YYSARAIEKIFPREITWRQTVLPEMYAEKVPVGAK
Ga0318561_100965034	3300031679	Soil	LLLDAVKTVQTGGNPPGVDTSYYSARAIEKIFPRQETWRQTVLPEMYAEELPAAAK
Ga0318561_101914301	3300031679	Soil	GNPPGVDTSYYSARAIEKIFPREITWRETVLPEMYAEEMPIAAK
Ga0318561_108228991	3300031679	Soil	TSYYQARAIEKIFPRQETWRRTVLPEMYAEDLPVAAK
Ga0318560_102059013	3300031682	Soil	VEAGGNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0310686_1016128292	3300031708	Soil	NPPGVDTSYYSARAIEKIFPRQETWRDTVLPEMYAEDLPVSAK
Ga0306917_112150812	3300031719	Soil	GNPPGADDSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0318501_100162891	3300031736	Soil	VQAGGNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0318501_105989672	3300031736	Soil	YYSARAIEKIFPRHDTWRQAVLPEMYAEELPVAAK
Ga0318502_110163061	3300031747	Soil	VQAGGNPPGVDTSYYSARAIEKIFPRQDTWRQTVLPEMYAEELPVAAK
Ga0318535_105686771	3300031764	Soil	SYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318521_105246512	3300031770	Soil	VKTVQAGGSPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318521_108543881	3300031770	Soil	VDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0318546_110222282	3300031771	Soil	SYYSARAIERIFPREMTWRETVLPEMYAEQLPVAAK
Ga0318566_101276991	3300031779	Soil	GVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318547_105192711	3300031781	Soil	LDAVKTVEAGGSPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318523_100043506	3300031798	Soil	VDTSYYSARAIERIFPREMTWRDTVLPEMYAEELPVAAK
Ga0318565_105355781	3300031799	Soil	VDTSYYSARAIEKIFPRRDTWRRTVLPEMYAEELPVAAK
Ga0318497_107092472	3300031805	Soil	PPGVDTSYYSARAIERIFPREMTWRETVLPEMYAEDMPVAAK
Ga0318499_103944742	3300031832	Soil	SYYSARAIEKIFPREITWRETVLPEMYAEEMPIAAK
Ga0318511_101646591	3300031845	Soil	VDDSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0318544_103870091	3300031880	Soil	DTSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0306925_107391351	3300031890	Soil	PPGVDTSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0306925_120075342	3300031890	Soil	RLLLDALKTVQAGGNPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318536_102538312	3300031893	Soil	VDASYYSARAIEKIFPRHDTWRQTMLPEMYAEELPVAAK
Ga0318522_102528622	3300031894	Soil	PGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAVK
Ga0318551_105391382	3300031896	Soil	TSYYSARAIEKIFPRRDTWRRTVLPEMYAEELPVAAK
Ga0318520_100923924	3300031897	Soil	LLLDAVTTVQAGGNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAVK
Ga0318520_108984081	3300031897	Soil	TGGNPPGADTSYYSARAIEKVFPRHDTWRQTVLPEMYAEELPVAAK
Ga0306923_125303312	3300031910	Soil	TSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAVK
Ga0306921_125637991	3300031912	Soil	LLDAVKTVQTGGSPPGVDTSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0310912_100778783	3300031941	Soil	DTSYYSARAIERIFPREMTWRETVLPEMYAEELPVAAK
Ga0310916_100454775	3300031942	Soil	ASYYSARAIEKIFPRHDTWRRTVLPEMYAEELRVVAK
Ga0310910_106752982	3300031946	Soil	PGVDTSYYSARAIEKIFPREITWRETVLPEMYAEEMPIAAK
Ga0310910_111078861	3300031946	Soil	DNSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0310910_112295351	3300031946	Soil	GSPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0310909_102604903	3300031947	Soil	DTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0310909_116233481	3300031947	Soil	NPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAVK
Ga0318530_101098123	3300031959	Soil	YYSARAIERIFPREMTWRETVLPEMYAEDMPVAAK
Ga0318531_100571514	3300031981	Soil	VQAGGNPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318531_104268532	3300031981	Soil	RLLLDAVKTVQAGGNPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0306922_109296841	3300032001	Soil	RLLLDAVKTVQAGGNPPGADNSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0318507_102044691	3300032025	Soil	TSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0310911_108913272	3300032035	Soil	YYSARAIEKIFPRRDTWRRTVLPEMYAEELPVAAK
Ga0318559_104177212	3300032039	Soil	VKTVQAGGSPPGVDTSYYSARAIEKIFPRHDTWRETVLPEMYAEELPAAAK
Ga0318559_105310671	3300032039	Soil	AGGNPPGADDSYYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0318556_105637962	3300032043	Soil	PPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0318575_106940592	3300032055	Soil	AVKTVQAGGNPPGVDTSYYSARAIEKIFPRHDTWRRTVLPEMYAEELPVAAK
Ga0318533_101121824	3300032059	Soil	YYSARAIEKIFPRHDTWRQTVLPEMYAEELPVAAK
Ga0318504_101366503	3300032063	Soil	YYSARAIEKIFPRHATWRQTVLPEMYAEELPVAAK
Ga0318504_104153811	3300032063	Soil	KTVQTGGNPPGVDTSYYSARAIEKIFPRQETWRQTVLPEMYAEELPAAAK
Ga0306924_107262493	3300032076	Soil	TSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0318518_100459941	3300032090	Soil	VDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0318518_104078762	3300032090	Soil	SYYSARAIERIFPREMTWRDTVLPEMYAEELPVAAK
Ga0318577_100137021	3300032091	Soil	GVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEKLPVAAK
Ga0318540_106059901	3300032094	Soil	AVTTVQAGGNPPGVDTSYYSARAIEKIFPRNDTWRQTVLPEMYAEALPVAAK
Ga0307471_1006415003	3300032180	Hardwood Forest Soil	DAVKTVQAGGNPPGADASYYSARAIEKIFPREDTWRQTVLPEMYAEEFPLAAK
Ga0307472_1007964542	3300032205	Hardwood Forest Soil	VKTVQAGGNPPGADASYYSARAIEKIFPREDTWRRTVLPEMYAEALPAAAK
Ga0335073_112451422	3300033134	Soil	TDTSYYQARAIEKIFPRDETWRQTVLPEMYAEDLPVAAK
Ga0318519_100419861	3300033290	Soil	VQEGGNPPGVDTSYYSARAIERIFPREMTWRETVLPEMYAEEQPVAAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068696

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences