Metagenome / Metatranscriptome Family F069030

Basic Information
Family ID	F069030
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	88 residues
Representative Sequence	VKYNKKDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGGGGDGPQVEAEHPRPKVEDEL
Number of Associated Samples	87
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.23 %
% of genes near scaffold ends (potentially truncated)	30.65 %
% of genes from short scaffolds (< 2000 bps)	83.87 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.355 % of family members)
Environment Ontology (ENVO)	Unclassified (26.613 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.613 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130. 1SwBSRL2_0401.00002210 2JGI10216J12902_1002333852 3JGI10216J12902_1006160962 4JGI10216J12902_1007772953 5JGI10216J12902_1019463014 6JGI10216J12902_1052711112 7JGI10216J12902_1240869322 8soilL2_100496605 9Ga0062589_1018548172 10Ga0063356_1001635742 11Ga0063356_1002699923 12Ga0063356_1003470601 13Ga0063356_1041959831 14Ga0065712_102060011 15Ga0065705_101674182 16Ga0070677_101122672 17Ga0070677_107277121 18Ga0070674_1008702001 19Ga0070701_108199022 20Ga0068861_1005859081 21Ga0068870_110893552 22Ga0068862_1020083122 23Ga0075368_101958781 24Ga0075363_1009601201 25Ga0075422_100315042 26Ga0075430_1006829413 27Ga0079217_100290363 28Ga0079217_116225772 29Ga0075429_1012451862 30Ga0068865_1009361252 31Ga0079215_100973262 32Ga0079215_104986471 33Ga0079215_116992721 34Ga0079216_103113392 35Ga0079216_115782821 36Ga0079218_103683832 37Ga0079218_114023642 38Ga0105106_106563692 39Ga0105107_100106422 40Ga0075418_110289562 41Ga0114129_104857992 42Ga0114129_121794522 43Ga0111538_133304501 44Ga0105249_100530674 45Ga0105340_10073052 46Ga0105340_13337792 47Ga0134122_111389272 48Ga0126317_108795902 49Ga0127502_101734552 50Ga0137312_10568332 51Ga0157299_100500202 52Ga0157291_104190331 53Ga0157306_102412731 54Ga0157380_100490574 55Ga0163144_1002470011 56Ga0132258_101239063 57Ga0132258_118516722 58Ga0132258_130498841 59Ga0132258_133173682 60Ga0132256_1010423691 61Ga0132257_1006627831 62Ga0132257_1027506852 63Ga0136617_100215885 64Ga0190266_100850471 65Ga0184634_100828252 66Ga0184624_100497441 67Ga0184624_101212272 68Ga0184628_104294552 69Ga0190265_102568692 70Ga0190272_103042642 71Ga0190272_108575722 72Ga0190272_122332392 73Ga0190272_125372021 74Ga0190272_131405801 75Ga0190275_103660252 76Ga0190275_103919702 77Ga0190270_100182924 78Ga0190270_130083901 79Ga0190274_104821432 80Ga0190274_115495832 81Ga0190271_100786783 82Ga0190271_102540343 83Ga0190271_128509862 84Ga0173481_107029381 85Ga0190264_110791682 86Ga0190264_117123332 87Ga0190264_122294762 88Ga0163153_100989152 89Ga0163150_100200208 90Ga0207697_101634972 91Ga0207682_101366302 92Ga0207681_101625082 93Ga0207681_107457771 94Ga0207701_104711502 95Ga0207701_111322952 96Ga0207706_101593502 97Ga0208185_10359942 98Ga0209818_11221272 99Ga0209387_10515351 100Ga0209971_10875391 101Ga0209706_100066856 102Ga0209813_100709962 103Ga0209974_101878712 104Ga0209486_100657342 105Ga0207428_1000030151 106Ga0209705_101031031 107Ga0209705_106252502 108Ga0268265_117577252 109Ga0247827_107618022 110Ga0299914_111996292 111Ga0299913_113023441 112Ga0307405_110002562 113Ga0310904_101505612 114Ga0310904_107590452 115Ga0310892_104357412 116Ga0307412_111507321 117Ga0310884_100255762 118Ga0310884_106767252 119Ga0310906_109521401 120Ga0310890_105435181 121Ga0315910_114956191 122Ga0364945_0218443_2_229 123Ga0370490_0011505_2447_2776 124Ga0364927_0019727_2_256
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130. 1SwBSRL2_0401.00002210 2JGI10216J12902_1002333852 3JGI10216J12902_1006160962 4JGI10216J12902_1019463014 5JGI10216J12902_1052711112 6soilL2_100496605 7Ga0063356_1001635742 8Ga0063356_1002699923 9Ga0065712_102060011 10Ga0070677_101122672 11Ga0075368_101958781 12Ga0079217_116225772 13Ga0079215_104986471 14Ga0079215_116992721 15Ga0079218_103683832 16Ga0105107_100106422 17Ga0114129_104857992 18Ga0163144_1002470011 19Ga0190265_102568692 20Ga0190275_103919702 21Ga0190270_130083901 22Ga0190271_128509862 23Ga0190264_122294762 24Ga0209705_101031031 25Ga0310890_105435181 26Ga0370490_0011505_2447_2776
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86. 1JGI10216J12902_1007772953 2SwBSRL2_0401.00002210 3JGI10216J12902_1006160962 4JGI10216J12902_1019463014 5JGI10216J12902_1052711112 6JGI10216J12902_1240869322 7soilL2_100496605 8Ga0063356_1003470601 9Ga0079217_100290363 10Ga0079215_116992721 11Ga0079216_103113392 12Ga0079216_115782821 13Ga0075418_110289562 14Ga0114129_104857992 15Ga0114129_121794522 16Ga0127502_101734552 17Ga0157299_100500202 18Ga0132257_1006627831 19Ga0132257_1027506852 20Ga0136617_100215885 21Ga0190266_100850471 22Ga0190265_102568692 23Ga0190272_103042642 24Ga0190272_108575722 25Ga0190272_122332392 26Ga0190272_125372021 27Ga0190272_131405801 28Ga0190275_103660252 29Ga0190275_103919702 30Ga0190270_100182924 31Ga0190274_115495832 32Ga0190271_100786783 33Ga0190271_128509862 34Ga0190264_110791682 35Ga0190264_117123332 36Ga0190264_122294762 37Ga0163153_100989152 38Ga0207682_101366302 39Ga0209706_100066856 40Ga0209813_100709962 41Ga0209705_101031031 42Ga0268265_117577252 43Ga0299914_111996292 44Ga0307412_111507321 45Ga0370490_0011505_2447_2776
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF01434	Peptidase_M41	56.45
PF01103	Omp85	4.03
PF13091	PLDc_2	3.23
PF00255	GSHPx	2.42
PF00483	NTP_transferase	0.81
PF07238	PilZ	0.81
PF06480	FtsH_ext	0.81
PF04956	TrbC	0.81
PF01066	CDP-OH_P_transf	0.81
PF01425	Amidase	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	57.26
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	2.42
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.81
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.81
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.81
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.81
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.81
COG3458	Cephalosporin-C deacetylase or related acetyl esterase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.81
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.81

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	86.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	0.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	84.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	84.68 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	84.68 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	84.68 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	84.68 %
Blautia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	84.68 %
Blautia schinkii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia schinkii	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	0.00 %

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_1214351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300000956\|JGI10216J12902_100233385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300000956\|JGI10216J12902_100616096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1485	Open in IMG/M
3300000956\|JGI10216J12902_100777295	All Organisms → cellular organisms → Bacteria → Proteobacteria	4145	Open in IMG/M
3300000956\|JGI10216J12902_101946301	All Organisms → cellular organisms → Bacteria → Acidobacteria	15054	Open in IMG/M
3300000956\|JGI10216J12902_105271111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1495	Open in IMG/M
3300000956\|JGI10216J12902_124086932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300003319\|soilL2_10049660	All Organisms → cellular organisms → Bacteria	6698	Open in IMG/M
3300004156\|Ga0062589_101854817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300004463\|Ga0063356_100163574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.13%
Host-Associated	Host-Associated	33.87%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	15.32%
Plants	Host-Associated → Plants	33.87%
Terrestrial	Environmental → Terrestrial	50.81%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	1.61%
Freshwater	Environmental → Aquatic → Freshwater	8.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.13%
Roots	Host-Associated → Plants → Roots	2.42%
Sediment	Environmental → Aquatic → Sediment	6.45%
Soil	Environmental → Terrestrial → Soil	49.19%

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.61%
Ice	Environmental → Aquatic → Freshwater → Ice	0.81%
Lake	Environmental → Aquatic → Freshwater → Lake	2.42%
Loam	Environmental → Terrestrial → Soil → Loam	0.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.03%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.65%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.03%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.61%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	9.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	2.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.81%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.84%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.23%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.42%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.81%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 87 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0401.00002210	2162886013	Switchgrass Rhizosphere	MVKMKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI
JGI10216J12902_1002333852	3300000956	Soil	LPLRYCARHDNKEERDVKYNKKDQNEQPGDVLGISNPGGPKLPHPPSDGSTPVGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKVEDEV*
JGI10216J12902_1006160962	3300000956	Soil	VKSNKKNKKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGEPTRHWGIEDIPQSDGASGIDMGGGGEGTQVRVEQPRAKVEDEG*
JGI10216J12902_1007772953	3300000956	Soil	VKYNKKDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGGGGDGPQVEAEHPRPKVEDEL*
JGI10216J12902_1019463014	3300000956	Soil	VKSNKKQDTEQPGDILGISNPGGPKLPHPPSDGSTPRGIDVRSERERHWGDEDIPQSDGASGIDMGGAGNGPQVASEHPRPKVDESE*
JGI10216J12902_1052711112	3300000956	Soil	VKSTKQNKKEQPGDVLGISNPGGPKLPHPPSDGSTPEGIDVRPERSRHWGTEDIPQSDGAAGVDMGSGGSGPQIASGHSKPGSTEEP*
JGI10216J12902_1240869322	3300000956	Soil	VDYKKNKKEQPGDVLGISNPGGPKLPHPPSDGSTPRGIDVRSERKRHWGNEDIPQSDGATGIDMGGGGSGPQVEAEHPRPKVEDEV*
soilL2_100496605	3300003319	Sugarcane Root And Bulk Soil	VRQNKRNKKEHPGDVLGISKVEGPKLSSPPSDGSTARGIDVRGDRPRHWGNEDIPQSDGAAGIDMGGGGDGPQVRPEHDRPKSALNEED*
Ga0062589_1018548172	3300004156	Soil	MKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI*
Ga0063356_1001635742	3300004463	Arabidopsis Thaliana Rhizosphere	VANRQDKEDHPGDILGISRAEGPKLPHPPSDGSTPQGIEVRGERPRHWGNEDVPQSDGVSGIDMGGAGEGTQIKGDRRPRTAAEDEDVNLGSFSE*
Ga0063356_1002699923	3300004463	Arabidopsis Thaliana Rhizosphere	VKFTKKAKKEQPGDVLGVSHAGGPQLPHPPSDGSTPSGIEVRGERPRHWGNEDIPQSDGVSGIDMGGAGEGTGIKSDRPHTPAEDEKRNLGGLSE*
Ga0063356_1003470601	3300004463	Arabidopsis Thaliana Rhizosphere	MKFTKKRTKKEQPGDVLGVSRAAGPQLPSPPSDGSTPSGIEVRGERPRHWGNEDIPQSDGVSGIDMGGAGEGTGVKDSRPRTSANDEKRKLGGLSE*
Ga0063356_1041959831	3300004463	Arabidopsis Thaliana Rhizosphere	MKKDNKQPGDILGLSRGEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGASGIDMGGAGEGTQVS
Ga0065712_102060011	3300005290	Miscanthus Rhizosphere	VNHNKSDKNVQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEPTRPQSEDDR*
Ga0065705_101674182	3300005294	Switchgrass Rhizosphere	MVKMKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI*
Ga0070677_101122672	3300005333	Miscanthus Rhizosphere	VRDKSKTNKEQPGDVLGISRSGASKLPHPPSDGSVPQGIEVRAERKRHWGNEDIPQSDGATGMDMGGGGTGPQIGSEAED*
Ga0070677_107277121	3300005333	Miscanthus Rhizosphere	VKYNKSDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAADIDMGAGGDGTQIAPELSRPQSEDEL*
Ga0070674_1008702001	3300005356	Miscanthus Rhizosphere	VKYNKSDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEHSRPQSEDEL*
Ga0070701_108199022	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSPEHSRLKVDDV*
Ga0068861_1005859081	3300005719	Switchgrass Rhizosphere	VKMKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI*
Ga0068870_110893552	3300005840	Miscanthus Rhizosphere	VNHNKSDKNVQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGATGIDMGAGGDGTQIAPEPTRPQSEDEL*
Ga0068862_1020083122	3300005844	Switchgrass Rhizosphere	SKKRTKKEQPGDVLGISHAGGPQLPHPPSDGTTPSGIEVRGDRPRHWGNEDIPQSDGVSGVDMGGAGEGTGISSDRPRSPAEDEKRNLGGLSE*
Ga0075368_101958781	3300006042	Populus Endosphere	VKNDNQKEQPGDVLGISNPGGPKLPHPPSDGSTPRGIDVRSERKRHWGNEDIPQSDGASGIDMGAGGDGPQIAPE
Ga0075363_1009601201	3300006048	Populus Endosphere	VKNDNQKEQPGDVLGISNPGGPKLPHPPSDGSTPRGIDVRSERKRHWGNEDIPQSDGASGIDMGAGGDGPQIAPEHPRPKVEDEI*
Ga0075422_100315042	3300006196	Populus Rhizosphere	VKYNKTDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIEVRGERPRHWGNEDIPQSDGASGIDMGGGGDGTQIAPEHPRPTSEDDL*
Ga0075430_1006829413	3300006846	Populus Rhizosphere	VKNNKRNKNDHPGDVLGISKMGGPKLSSPPSDGSTARGIDVRGDRPRHWGNEDIPQSDGAAGIDMGAGGDGPQVRPEHDQPMSALDED*
Ga0079217_100290363	3300006876	Agricultural Soil	VKFTKKNKKDQPGDVLGISNAGGPTLPHPPSDGTTPRGIEVRGEPKRHWGNEDIPQSDGVTGIDMGGSGEGTQVKADRRPRTAAEDEELNLGSHSE*
Ga0079217_116225772	3300006876	Agricultural Soil	KHDKDDKKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGEPKRHWGNEDIPQSDGASGVDMGGGGEGTGIESDLPRTGADDEDLNLRGSSE*
Ga0075429_1012451862	3300006880	Populus Rhizosphere	VKNNKRNKNDHPGDVLGISKMGGPKLASPPSDGSTARGIDVRGDRPRHWGNEDIPQSDGAAGIDMGAGGDGPQVRPEHDQPMSALDED*
Ga0068865_1009361252	3300006881	Miscanthus Rhizosphere	MKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSPEHSRPKVDDV*
Ga0079215_100973262	3300006894	Agricultural Soil	VKYTKKNKKEQPGDVLGVSNTGPGPQLPHPPSDGTTPRGIDVRGERKRHWGNEDIPQSDGASGIDMGGGGEGTQVKAEHPRPKVEDEV*
Ga0079215_104986471	3300006894	Agricultural Soil	TSEQPGDGLGISNPGGPKLPHTPSDGTTPQGIEVRGEPKRHWGNEDIPQSDGASGIDMGGAGEGTGITADRGPRTAAEDEDRDLGGSSE*
Ga0079215_116992721	3300006894	Agricultural Soil	VKFTRKNKAKKEHPGDVLGISNPGGEKLPHPPSDGSTPQGIEVRGERPRHWGTEDIPQSDGASGIDMGAGGEGTHVAAEHPRPKRIKEV*
Ga0079216_103113392	3300006918	Agricultural Soil	VKYTKKNEKEQPGDVLGVSNTGTGPQLPHPPSDGSTPRGIDVRGERKRHWGNEDIPQSDGASGIDMGGGGEGTQVKAEHPRPKVEDEV*
Ga0079216_115782821	3300006918	Agricultural Soil	PGDVLGVSNPAGPKLPHPPSDGTTPRGIEVRGEPKRHWGNEDIPQSDGASGIDMGGGGEGTGLRAEHPRPKVEDEV*
Ga0079218_103683832	3300007004	Agricultural Soil	VSNPAGPKLPHPPSDGTTPRGIEVRGEPKRHWGNEDIPQSDGASGIDMGGGGEGTGLRAEHPRPKVEDEV*
Ga0079218_114023642	3300007004	Agricultural Soil	VKFTKKNKNKKEQPGDVLGVSNPSGPKLPHPPSDGSTPRGIEVRGEPKRHWGIEDIPQSDGASGIDMGGGGEGTQVRAEHPRPKVEDEI*
Ga0105106_106563692	3300009078	Freshwater Sediment	VKSKRNKKAQPGDVLGVSDAAGPKLPHPPSDGSTPRGIEVRPVPERHWGNEDIPQSDGATGIDMGGAGSGPQISSEHPRAKAEDDI*
Ga0105107_100106422	3300009087	Freshwater Sediment	VKSKRTKKAQPGDVLGVSDASGPKLPHPPSDGSTPRGIEVRPVPERHWGNEDIPQSDGATGIDMGGAGSGPQVTSEPPRAKADDDI*
Ga0075418_110289562	3300009100	Populus Rhizosphere	VDVKNNKRNKNDHPGDVLGISKMGGPKLSSPPSDGSTARGIDVRGDRPRHWGNEDIPQSDGAAGIDMGAGGDGPQVRPEHDHPTSALDED*
Ga0114129_104857992	3300009147	Populus Rhizosphere	MFKHGVVHPLRSFERAGFRRSKESDVKSTKRTTKEQPGDVLGVSRAGGPQLPHPPSDGTTPSGIEVRGERPRHWGNEDIPQSDGVAGVDMGGAGEGTGIKSDRPRTPAEDEKRNLGGLSE
Ga0114129_121794522	3300009147	Populus Rhizosphere	VKYNKRDKNEKPGDILGVSNPGGPKLPHPPSDGSTPRGIDVRGERPRHWGNEDIPQSDGASGIDMGGGGDGTQIAPEHPRPTSEDDL*
Ga0111538_133304501	3300009156	Populus Rhizosphere	MKFTKKRTKKEQPGDVLGVSRAAGPQLPSPPSDGSTPSGIEVRGERPRHWGNEDIPQSDGVSGIDMGGAGEGTGVKDSRPRTSADDEKRKLGGLSE*
Ga0105249_100530674	3300009553	Switchgrass Rhizosphere	MKNDNKQPGDILGGSRTKRTKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI*
Ga0105340_10073052	3300009610	Soil	VEYNKKDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL*
Ga0105340_13337792	3300009610	Soil	VNYNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPESTRPQSEDEL*
Ga0134122_111389272	3300010400	Terrestrial Soil	VKYNKSDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEHSRPQSED
Ga0126317_108795902	3300011332	Soil	VKYNKRDKKEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGPQIASEHPRPQSEDDL*
Ga0127502_101734552	3300011333	Soil	MDVKHDKDDKKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGEPKRHWGNEDIPQSDGASGVDMGGGGEGTGIESDLPRTGADDEDLNLRGSSE*
Ga0137312_10568332	3300011400	Soil	VKYNKTDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPTSEDEL*
Ga0157299_100500202	3300012899	Soil	RHSEKPKERDVKYNKTDKKEQPGDVRGISNTGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGATGIDMGAGGEGTQVAAEHPRPKSEDEL*
Ga0157291_104190331	3300012902	Soil	KAKERDVNNNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEPTRPQSEDEL*
Ga0157306_102412731	3300012912	Soil	DVLGVSHAGGPQLPHPPSDGSTPSGIEVRGERPRHWGNEDIPQSDGVSGIDMGGAGEGTGIKSDRPHTPAEDEKRNLGGLSE*
Ga0157380_100490574	3300014326	Switchgrass Rhizosphere	VNNNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGATGIDMGAGGDGTQIAPEP
Ga0163144_1002470011	3300015360	Freshwater Microbial Mat	VKNENDKKEQPGDVLGISNPAGPKLPHPPSDGSTPQGIEVRGEPKRHWGNEEMPQSDGATGIDMGGGGNGPQIASDRPSPKASEEI*
Ga0132258_101239063	3300015371	Arabidopsis Rhizosphere	VANRKDREDHPGDILGISRAEGPKLPHPPSDGSTPQGIEVRGERPRHWGNEDVPQSDGVSGIDMGGAGEGTQIKGDRRPRTAAEDEDVNLGSFSE*
Ga0132258_118516722	3300015371	Arabidopsis Rhizosphere	VANRQDKEDHPGDILGISRAEGPKLPHPPSDGSTPQGIEVRGERPRHWGNEDVPQSDGVSGIDMGGAGEGTQIKSDRRPRTAAEDEDVNLGSFSE*
Ga0132258_130498841	3300015371	Arabidopsis Rhizosphere	MKNDNKQPGDILGVSRAEGPKLPHPPSDRSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI*
Ga0132258_133173682	3300015371	Arabidopsis Rhizosphere	MKKDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGASGIDMGGAGEGTQVSAEHPRPKIDEDI*
Ga0132256_1010423691	3300015372	Arabidopsis Rhizosphere	VANRKDREDHPGDILGISRAEGPKLPHPPSDGSTPQGIEVRGERPRHWGNEDVPQSDGVSGIDMGGAGEGTQIKSDRRPRTAAEDEDVNLGSFSE*
Ga0132257_1006627831	3300015373	Arabidopsis Rhizosphere	RRAVRHCGTPLATVIVWRRIVANRKDREDHPGDILGISRAEGPKLPHPPSDGSTPQGIEVRGERPRHWGNEDVPQSDGVSGIDMGGAGEGTQIKGDRRPRTAAEDEDVNLGSFSE*
Ga0132257_1027506852	3300015373	Arabidopsis Rhizosphere	VKHNNRDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIEVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGPQIASEHPRPQSEDEL*
Ga0136617_100215885	3300017789	Polar Desert Sand	VKFTKKKNKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIEVRGERPRHWGTEDIPQSDGASGIDMGGGGEGTHIAPVPPGPKTKKEI
Ga0190266_100850471	3300017965	Soil	VNHNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEPTRPQSEDEL
Ga0184634_100828252	3300018031	Groundwater Sediment	VKDNKTDKKEQPGDVLGISNPGGPKLPHPPSDGSIPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL
Ga0184624_100497441	3300018073	Groundwater Sediment	NKTDKKEQPGDVLGISNPGGPKLPHPPSDGSIPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL
Ga0184624_101212272	3300018073	Groundwater Sediment	VNNNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGATGIDMGAGGDGTQIAPEPTRPQSEDEL
Ga0184628_104294552	3300018083	Groundwater Sediment	VKDNKTDKKEQPGDVLGISNPGGPKLPHPPSDGSIPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAE
Ga0190265_102568692	3300018422	Soil	VKFTKNKNEKPGDVLGISNPGGPKLPHPPSDGSTPRGIDVRGERRRHWGTEDIPQSDGATGIDMGGGGEGTQIEAEPSAPKRSDDI
Ga0190272_103042642	3300018429	Soil	VKKDKNTNEQPGDVLGISNPGGPKLPHPPSDGTTPVGIEVRGEPKRHWGNEDIPQSDGASGIDMGGAGEGTGITADRGPRTAAEDEDRDLGGSSE
Ga0190272_108575722	3300018429	Soil	VKNDKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIDVRPERPRSTGIGDIPQSDGASGIDMGGGGEGTGVRAEHPRPKVDED
Ga0190272_122332392	3300018429	Soil	VKNEKKQPGDVLGVRSLARQKLPHPPSDGSTPRGIDVRSERERHWGIEDIPQSDGASGVDMGGGGEGTEVRAEHPRPKVEDEI
Ga0190272_125372021	3300018429	Soil	VKKDKNKKEHPGDVLGISNPGGPKLAHPPSDGTTPRGIEVRGEPTRHWGNEDIPQSDGASGVDMGGAGEGTGVTAARRPRAPAEDED
Ga0190272_131405801	3300018429	Soil	VKFTKKDKKEQPGDVLGISNPGGPKLPHPPSDGSTPHGIEVRGEPKRHWGTEDIPQSDGATGIDMGAGGDGPQIAAEPDRPKSSDDL
Ga0190275_103660252	3300018432	Soil	VKNDNDKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGERPRHWGTEDIPQSDGASGIDMGGAGEGTSIKSDRPRTPATDEERDLDGSTE
Ga0190275_103919702	3300018432	Soil	MNGTSLATGTVEEINVKKDKDEKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGEPTRHWGNEDIPQSDGASGIDMGGAGEGTGVKADRRPRTSAEDEDRDLGGSSE
Ga0190270_100182924	3300018469	Soil	VKDNKQDKNEQPGDVLGISNPGGPKLPHPPSDGSTPRGIDVRSERKRHWGTEDIPQSDGASGVDMGGGGSGPQVAAEHPRPKVEDDV
Ga0190270_130083901	3300018469	Soil	VKKNKNKKEQPGDVLGVSNPAGPKLAHPPSDGTTPRGIEVRGEPKRHWGNEDIPQSDGASGIDMGGAGEGTGI
Ga0190274_104821432	3300018476	Soil	VNNNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPESTRPQSEDEL
Ga0190274_115495832	3300018476	Soil	VKDKQDRKKQPGDVLGVSNPGGPKLPHPPSDGSTPRGIEVRGEPKRHWGNEDIPQSDGASGIDMGGAGEGTGITADRRPRAATEDEEDLSGRSE
Ga0190271_100786783	3300018481	Soil	VKDNKRDKKEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGPQIAPEQRRTKSEDEL
Ga0190271_102540343	3300018481	Soil	VNYNKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEPTRSQSEDEP
Ga0190271_128509862	3300018481	Soil	VNDKNRDRKEQPGDVLGISNPGGPKLPHPPSDGSTPRGIEVRGERPRHWGNEDIPQGDGATGMDMGGGGSGPQIAPEPSRTKTEDED
Ga0173481_107029381	3300019356	Soil	KPKERDVKYNKTDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL
Ga0190264_110791682	3300019377	Soil	VKDNDQDKKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGEPKRHWGNEDIPQSDGATGMDMGGGGGGPQIAPEPSRAKTEDEDRDLGGSSE
Ga0190264_117123332	3300019377	Soil	VSNPAGPKLPHPPSDGSTPRGIDVRPERERHWGIEDIPQSDGASGIDMGGGGEGTGVRAEHPRPKVEDEI
Ga0190264_122294762	3300019377	Soil	VLGISNPGGPKLPHPPSDGSTPQGIEVRGEPGRHWGNEDIPQSDGATGIDMGGGGSGPQIAAEQPRPKSSEET
Ga0163153_100989152	3300020186	Freshwater Microbial Mat	VKNENDKKEQPGDVLGISNPAGPKLPHPPSDGSTPQGIEVRGEPKRHWGNEEMPQSDGATGIDMGGGGNGPQIASDRPSPKASEEI
Ga0163150_100200208	3300020195	Freshwater Microbial Mat	VKNENDKKEQPGDVLGISNPAGPKLPHPPSDGSTPQGIEVRGEPKRHWGNEEMPQSDGATGIDMGGGGNGPQIASDRPSPK
Ga0207697_101634972	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VKYNKSDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEHSRPQSEDEL
Ga0207682_101366302	3300025893	Miscanthus Rhizosphere	VRDKSKTNKEQPGDVLGISRSGASKLPHPPSDGSVPQGIEVRAERKRHWGNEDIPQSDGATGMDMGGGGTGPQIGSEAED
Ga0207681_101625082	3300025923	Switchgrass Rhizosphere	MKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI
Ga0207681_107457771	3300025923	Switchgrass Rhizosphere	VKYNKSDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPEPTRPQSE
Ga0207701_104711502	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VKYNKKDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGPQIASEHPRPQSEDEL
Ga0207701_111322952	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VNHNKSDKNVQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPQPTRPQSEDDR
Ga0207706_101593502	3300025933	Corn Rhizosphere	VKMKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI
Ga0208185_10359942	3300027533	Soil	VEYNKKDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL
Ga0209818_11221272	3300027637	Agricultural Soil	VKFTKKNKKDQPGDVLGISNAGGPTLPHPPSDGTTPRGIEVRGEPKRHWGNEDIPQSDGVTGIDMGGSGEGTQVKADRRPRTAAEDEE
Ga0209387_10515351	3300027639	Agricultural Soil	LGKKERHVKYTKKNKKEQPGDVLGVSNTGPGPQLPHPPSDGTTPRGIDVRGERKRHWGNEDIPQSDGASGIDMGGGGEGTQVKAEHPRPKVEDEV
Ga0209971_10875391	3300027682	Arabidopsis Thaliana Rhizosphere	VKFTKGTKEQPGDVLGVSRAGGPQLPHPPSDGSTPSGIEVRGERPRHWGNEDIPQSDGVSGVDMGGAGEGTGIKSDRPRTPAEDEKRNLGGLSE
Ga0209706_100066856	3300027818	Freshwater Sediment	VKSKRTKKAQPGDVLGVSDASGPKLPHPPSDGSTPRGIEVRPVPERHWGNEDIPQSDGATGIDMGGAGSGPQVTSEPPRAKADDDI
Ga0209813_100709962	3300027866	Populus Endosphere	VKNDNQKEQPGDVLGISNPGGPKLPHPPSDGSTPRGIDVRSERKRHWGNEDIPQSDGASGIDMGAGGDGPQIAPEHPRPKVEDEI
Ga0209974_101878712	3300027876	Arabidopsis Thaliana Rhizosphere	VKFTKGTKEQPGDVLGVSRAGGPQLPHPPSDGSTPSGIEVRGERPRHWGNEDIPQSDGVSGIDMGGAGEGTGIKSDRPHTPAEDEKRNLGGLSE
Ga0209486_100657342	3300027886	Agricultural Soil	VKFTKKNKKDQPGDVLGISNAGGPTLPHPPSDGTTPRGIEVRGEPKRHWGNEDIPQSDGVTGIDMGGSGEGTQVKADRRPRTAAEDEELNLGSHSE
Ga0207428_1000030151	3300027907	Populus Rhizosphere	VKYNKTDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIEVRGERPRHWGNEDIPQSDGASGIDMGGGGDGTQIAPEHPRPTSEDDL
Ga0209705_101031031	3300027979	Freshwater Sediment	GVSNPAGPKLPHPPSDGSTPRGIEVRGEPQRHWGNEDIPQSDGATGIDMGAGGDGTQVNADRRPRTAAEDEERDLGSFSE
Ga0209705_106252502	3300027979	Freshwater Sediment	VKSKRNKKAQPGDVLGVSDAAGPKLPHPPSDGSTPRGIEVRPVPERHWGNEDIPQSDGATGIDMGGAGSGPQISSEHPRAKAEDDI
Ga0268265_117577252	3300028380	Switchgrass Rhizosphere	GPKEYDVNSKKRTKKEQPGDVLGISHAGGPQLPHPPSDGTTPSGIEVRGDRPRHWGNEDIPQSDGVSGVDMGGAGEGTGISSDRPRSPAEDEKRNLGGLSE
Ga0247827_107618022	3300028889	Soil	VKYNKRDKKEQPGDILGISNPGGPKLPHPPSDGTTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPESTRPQSEDEL
Ga0299914_111996292	3300031228	Soil	VKFTKKKKKEQPGDVLGVSNPGGPKLPHPPSDGSTPRGIEVRGEPKRHWGNEDIPQSDGASGVDMGGGGEGTGIKADRPRTAAEDEDRDLGGSSE
Ga0299913_113023441	3300031229	Soil	VLGVSNPDGPKLPHPPSDGSTPRGIEVRGEPKRHWGNEDIPQSDGASGVDMGGAGEGTGIKADRPRTAAEDEDRDLGGSSE
Ga0307405_110002562	3300031731	Rhizosphere	KKERDVKYNKKDEKEQPGDVLGVSNPGGPKLPHPPSDGTTPRGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVEAEHPRPKVEDEV
Ga0310904_101505612	3300031854	Soil	VNSKKRTKKEQPGDVLGISHAGGPQLPHPPSDGTTPSGIEVRGDRPRHWGNEDIPQSDGVSGVDMGGAGEGTGISSDRPRSPAEDEKRNLGGLSE
Ga0310904_107590452	3300031854	Soil	MVKMKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRGEPERHWGNEDIPQSDGVSGIDMGGAGEGTQ
Ga0310892_104357412	3300031858	Soil	DKSKTNKEQPGDVLGISRSGASKLPHPPSDGSVPQGIEVRAERKRHWGNEDIPQSDGATGMDMGGGGTGPQIGSEAED
Ga0307412_111507321	3300031911	Rhizosphere	VKFTKKRTKKEQPGDVLGVSHAGGPQLPHPPSDGTTPSGIEVRGDRPRHWGNEDIPQSDGVSGIDMGGAGEGTGVKSDRPRTPAEDEKRNLGGLSE
Ga0310884_100255762	3300031944	Soil	MKNDNKQPGDILGVSRAEGPKLPHPPSDGSGARGIEVRSEPERHWGNEDIPQSDGVSGIDMGGAGEGTQVSAEHPRPKVDDDI
Ga0310884_106767252	3300031944	Soil	VKSKKRTKKEQPGDVLGISHAGGPQLPHPPSDGTTPSGIEVRGDRPRHWGNEDIPQSDGVSGVDMGGAGEGTGISSDRPRSPAEDEKRNLGGLSE
Ga0310906_109521401	3300032013	Soil	NKSDKNEQPGDILGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGAAGIDMGAGGDGTQIAPESTRPQSEDEL
Ga0310890_105435181	3300032075	Soil	VNSKKRTKKEQPGDVLGISHAGGPQLPHPPSDGTTPSGIEVRGDRPRHWGNEDIPQSDGVSGVDMGGAGEGTGI
Ga0315910_114956191	3300032144	Soil	VKHDNSDKKEQPGDVLGVSNPAGPKLPHPPSDGSTPRGIEVRGEPTRHWGNEDIPQSDGASGIDMGGGGEGTGIASDSRPRSGADDEDLNLSSSSE
Ga0364945_0218443_2_229	3300034115	Sediment	GDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL
Ga0370490_0011505_2447_2776	3300034128	Untreated Peat Soil	MLSNNKETAVKFNKNDKDANETEQPGDVLGVSRAGGPQLPHPPSDGSTPAGIEVRGERKRHWGIEDIPQSDGASGIDMGGGGEGTGIAADSSPRTAAEDEERDLGGVTK
Ga0364927_0019727_2_256	3300034148	Sediment	NKKDKKEQPGDVLGISNPGGPKLPHPPSDGSTPQGIDVRGERPRHWGNEDIPQSDGASGIDMGAGGDGPQVAAEHPRPKSEDEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069030

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences