Metagenome Family F069142

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F069142
Family Type	Metagenome
Number of Sequences	124
Average Sequence Length	62 residues
Representative Sequence	VKLTDAQRSHLEELLRDRPQWFKEKILADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM
Number of Associated Samples	79
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	6.45 %
% of genes near scaffold ends (potentially truncated)	34.68 %
% of genes from short scaffolds (< 2000 bps)	84.68 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.968 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (28.226 % of family members)
Environment Ontology (ENVO)	Unclassified (25.806 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.968 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.78% β-sheet: 0.00% Coil/Unstructured: 52.22%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13676	TIR_2	2.42
PF12697	Abhydrolase_6	0.81
PF01850	PIN	0.81
PF01668	SmpB	0.81
PF00581	Rhodanese	0.81
PF01329	Pterin_4a	0.81
PF01734	Patatin	0.81
PF12680	SnoaL_2	0.81
PF00574	CLP_protease	0.81
PF10571	UPF0547	0.81
PF00381	PTS-HPr	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.61
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.61
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.81
COG1925	HPr or related phosphotransfer protein	Signal transduction mechanisms [T]	0.81
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.81
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.81
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
All Organisms	root	All Organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
cellular organisms	root	All Organisms → cellular organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	19.35 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	19.35 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	14.52 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	14.52 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.81 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	14.52 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.81 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	14.52 %
unclassified Rhodanobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter	0.81 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	14.52 %
Rhodanobacter sp. MP7CTX1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp. MP7CTX1	0.81 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16674023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1040	Open in IMG/M
2088090014\|GPIPI_16769264	Not Available	1614	Open in IMG/M
2088090014\|GPIPI_16887730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1318	Open in IMG/M
2088090014\|GPIPI_17002842	Not Available	1035	Open in IMG/M
2088090014\|GPIPI_17082801	All Organisms → cellular organisms → Bacteria	2993	Open in IMG/M
2170459010\|GIO7OMY02G8X6H	Not Available	514	Open in IMG/M
2189573000\|GPBTN7E02FVHW3	Not Available	514	Open in IMG/M
2228664022\|INPgaii200_c1079698	Not Available	575	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100641648	Not Available	940	Open in IMG/M
3300000550\|F24TB_13246766	Not Available	768	Open in IMG/M
3300000787\|JGI11643J11755_11789728	Not Available	619	Open in IMG/M
3300000955\|JGI1027J12803_100173221	Not Available	1237	Open in IMG/M
3300000955\|JGI1027J12803_100210056	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300000955\|JGI1027J12803_100806367	Not Available	812	Open in IMG/M
3300000955\|JGI1027J12803_100847745	Not Available	573	Open in IMG/M
3300000955\|JGI1027J12803_100928342	Not Available	806	Open in IMG/M
3300000955\|JGI1027J12803_101136208	Not Available	641	Open in IMG/M
3300000955\|JGI1027J12803_102719501	Not Available	687	Open in IMG/M
3300000955\|JGI1027J12803_104560978	Not Available	664	Open in IMG/M
3300001431\|F14TB_101781690	Not Available	1127	Open in IMG/M
3300004114\|Ga0062593_102920694	Not Available	546	Open in IMG/M
3300004463\|Ga0063356_101364453	Not Available	1041	Open in IMG/M
3300004463\|Ga0063356_102800322	Not Available	751	Open in IMG/M
3300004463\|Ga0063356_102856012	Not Available	744	Open in IMG/M
3300004479\|Ga0062595_100094727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1564	Open in IMG/M
3300005093\|Ga0062594_101640201	Not Available	668	Open in IMG/M
3300005167\|Ga0066672_10912006	Not Available	543	Open in IMG/M
3300005172\|Ga0066683_10597034	Not Available	669	Open in IMG/M
3300005180\|Ga0066685_10018209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4148	Open in IMG/M
3300005180\|Ga0066685_10090618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp. MP7CTX1	2030	Open in IMG/M
3300005332\|Ga0066388_100159435	Not Available	2845	Open in IMG/M
3300005332\|Ga0066388_101727500	Not Available	1109	Open in IMG/M
3300005332\|Ga0066388_103313166	Not Available	823	Open in IMG/M
3300005332\|Ga0066388_106135789	Not Available	607	Open in IMG/M
3300005354\|Ga0070675_100720328	Not Available	909	Open in IMG/M
3300005435\|Ga0070714_102385714	Not Available	514	Open in IMG/M
3300005450\|Ga0066682_10093326	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1882	Open in IMG/M
3300005450\|Ga0066682_10386774	Not Available	898	Open in IMG/M
3300005451\|Ga0066681_10021716	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3295	Open in IMG/M
3300005468\|Ga0070707_100741083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	946	Open in IMG/M
3300005540\|Ga0066697_10433825	Not Available	759	Open in IMG/M
3300005556\|Ga0066707_10388907	Not Available	909	Open in IMG/M
3300005556\|Ga0066707_10519009	Not Available	772	Open in IMG/M
3300005558\|Ga0066698_10565592	Not Available	770	Open in IMG/M
3300005558\|Ga0066698_11105841	Not Available	501	Open in IMG/M
3300005764\|Ga0066903_100005270	All Organisms → cellular organisms → Bacteria	11177	Open in IMG/M
3300005764\|Ga0066903_100216691	All Organisms → cellular organisms → Bacteria	2894	Open in IMG/M
3300005764\|Ga0066903_100570821	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1948	Open in IMG/M
3300005764\|Ga0066903_101500310	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005764\|Ga0066903_101726170	Not Available	1193	Open in IMG/M
3300005764\|Ga0066903_102166554	Not Available	1071	Open in IMG/M
3300005764\|Ga0066903_102197603	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300005764\|Ga0066903_102598762	Not Available	981	Open in IMG/M
3300005764\|Ga0066903_104441851	Not Available	749	Open in IMG/M
3300005764\|Ga0066903_108222456	Not Available	534	Open in IMG/M
3300006046\|Ga0066652_100813638	Not Available	893	Open in IMG/M
3300006175\|Ga0070712_101033296	Not Available	712	Open in IMG/M
3300006175\|Ga0070712_102044896	Not Available	502	Open in IMG/M
3300007255\|Ga0099791_10500614	Not Available	590	Open in IMG/M
3300009137\|Ga0066709_101536309	Not Available	958	Open in IMG/M
3300009137\|Ga0066709_102140002	Not Available	772	Open in IMG/M
3300009553\|Ga0105249_13290379	Not Available	520	Open in IMG/M
3300009792\|Ga0126374_10042316	Not Available	2245	Open in IMG/M
3300010047\|Ga0126382_10011405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4288	Open in IMG/M
3300010047\|Ga0126382_12349774	Not Available	516	Open in IMG/M
3300010325\|Ga0134064_10242442	Not Available	664	Open in IMG/M
3300010335\|Ga0134063_10205432	Not Available	928	Open in IMG/M
3300010359\|Ga0126376_10894650	Not Available	877	Open in IMG/M
3300010359\|Ga0126376_12182015	Not Available	598	Open in IMG/M
3300010361\|Ga0126378_11564005	Not Available	748	Open in IMG/M
3300010366\|Ga0126379_10991832	Not Available	944	Open in IMG/M
3300010366\|Ga0126379_13360432	Not Available	536	Open in IMG/M
3300010398\|Ga0126383_11283090	Not Available	822	Open in IMG/M
3300010398\|Ga0126383_12480407	Not Available	603	Open in IMG/M
3300012198\|Ga0137364_10197284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1474	Open in IMG/M
3300012198\|Ga0137364_10354880	Not Available	1094	Open in IMG/M
3300012202\|Ga0137363_10011072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5773	Open in IMG/M
3300012205\|Ga0137362_11101742	Not Available	675	Open in IMG/M
3300012285\|Ga0137370_10784273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300012361\|Ga0137360_10828088	Not Available	797	Open in IMG/M
3300012582\|Ga0137358_10406253	Not Available	921	Open in IMG/M
3300012896\|Ga0157303_10020795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1110	Open in IMG/M
3300012899\|Ga0157299_10111290	Not Available	723	Open in IMG/M
3300012908\|Ga0157286_10296298	Not Available	590	Open in IMG/M
3300012929\|Ga0137404_10021500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4660	Open in IMG/M
3300012960\|Ga0164301_10415981	Not Available	946	Open in IMG/M
3300012961\|Ga0164302_11773866	Not Available	520	Open in IMG/M
3300012971\|Ga0126369_12083794	Not Available	655	Open in IMG/M
3300012986\|Ga0164304_10548586	Not Available	853	Open in IMG/M
3300015264\|Ga0137403_10978786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	693	Open in IMG/M
3300015358\|Ga0134089_10219215	Not Available	770	Open in IMG/M
3300017659\|Ga0134083_10450144	Not Available	569	Open in IMG/M
3300018072\|Ga0184635_10155900	Not Available	912	Open in IMG/M
3300018431\|Ga0066655_10004822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5425	Open in IMG/M
3300018433\|Ga0066667_11394346	Not Available	615	Open in IMG/M
3300018482\|Ga0066669_10780596	Not Available	845	Open in IMG/M
3300019356\|Ga0173481_10445216	Not Available	646	Open in IMG/M
3300019361\|Ga0173482_10369662	Not Available	656	Open in IMG/M
3300019886\|Ga0193727_1004865	All Organisms → cellular organisms → Bacteria	5474	Open in IMG/M
3300019886\|Ga0193727_1081840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	978	Open in IMG/M
3300020580\|Ga0210403_10007570	All Organisms → cellular organisms → Bacteria	9013	Open in IMG/M
3300021344\|Ga0193719_10027102	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2464	Open in IMG/M
3300021560\|Ga0126371_10733803	Not Available	1135	Open in IMG/M
3300025922\|Ga0207646_10287443	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300025930\|Ga0207701_10272144	Not Available	1475	Open in IMG/M
3300026306\|Ga0209468_1014541	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2877	Open in IMG/M
3300026307\|Ga0209469_1053758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1261	Open in IMG/M
3300026324\|Ga0209470_1021789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3443	Open in IMG/M
3300026324\|Ga0209470_1134853	Not Available	1091	Open in IMG/M
3300026343\|Ga0209159_1021854	All Organisms → cellular organisms → Bacteria	3587	Open in IMG/M
3300026374\|Ga0257146_1063974	Not Available	597	Open in IMG/M
3300026537\|Ga0209157_1268536	Not Available	647	Open in IMG/M
3300027018\|Ga0208475_1010133	Not Available	923	Open in IMG/M
3300031231\|Ga0170824_105191979	Not Available	548	Open in IMG/M
3300031231\|Ga0170824_107865375	Not Available	631	Open in IMG/M
3300031231\|Ga0170824_120019567	Not Available	628	Open in IMG/M
3300031231\|Ga0170824_126854263	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1745	Open in IMG/M
3300031231\|Ga0170824_128566215	Not Available	806	Open in IMG/M
3300031231\|Ga0170824_128697372	Not Available	1134	Open in IMG/M
3300031446\|Ga0170820_12395537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	539	Open in IMG/M
3300031446\|Ga0170820_12926505	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1894	Open in IMG/M
3300031474\|Ga0170818_100537757	Not Available	826	Open in IMG/M
3300031474\|Ga0170818_110138899	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2052	Open in IMG/M
3300032205\|Ga0307472_100678530	Not Available	923	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.97%
Host-Associated	Host-Associated	4.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.16%
Plants	Host-Associated → Plants	4.03%
Aquatic	Environmental → Aquatic	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.61%
Sediment	Environmental → Aquatic → Sediment	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.42%
Loam	Environmental → Terrestrial → Soil → Loam	17.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	34.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.06%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.42%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.42%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00811030	2088090014	Soil	VKLTEAQRSHLDELLRNRPQWFKEKILADIAAEERQDEEENTPRSGLSAYTLACLESELGIM
GPIPI_02405460	2088090014	Soil	VKLTDAQRSHLEELLRDRPQWFKEKIMSDIAAEERRDDEEEGNPRAGLSAYTLACLESELGIM
GPIPI_02176830	2088090014	Soil	EELLRDRPQWFKEKISSDIAAGERRDEEEDTPRAGLSAYTLACLESELGIM
GPIPI_00899350	2088090014	Soil	VKLTDAQRSHLEELLRDRPQWFKEKILSDIAAEERRDDEEGTPRAGLSAYTLACLESELGIM
GPIPI_00440780	2088090014	Soil	VKLTDTQRLHLEELLRDRPQWFKAKVLADIAAEERRDDEEATPRAGLSAYTLACLECELGIM
F62_04995790	2170459010	Grass Soil	VKLTDAQRSHLDELLRDRPQWFKDKIMADIAAEERRDDEEDTPRSGLSAYTLACLESELGIM
N55_07615960	2189573000	Grass Soil	VKLTEAQRSHLDELLQDRPQWFKERILADIAAEERQDDEDDTPRSGLSAYTLACLESELGIM
INPgaii200_10796981	2228664022	Soil	RSHLDELLRNRPQWFKEKILADIAAEERQDEEENTPRSGLSAYTLACLESELGIM
INPhiseqgaiiFebDRAFT_1006416482	3300000364	Soil	KLTDAQRSHVEELLRGRPQWFKEKIXADIAAEERRDEEEDTPSSGLSAYTLACLESELGIM*
F24TB_132467662	3300000550	Soil	VKLTDAQRSHLEELLRDRPQWFKAKLLADIAAEEXXXXXXXTPRAGLSAYTLAFLESELGIM*
JGI11643J11755_117897282	3300000787	Soil	VKLTDAQRAHLEELLRDRPQWIKEKILADIASEERRDDEDDNPRAGLSAYTLACLESELGIM*
JGI1027J12803_1001732213	3300000955	Soil	VKLTEAQRSHLEELLRDRPQWFKEKILADIAAEERRDEEEDTPSSGLSAYTLACLESELGIM*
JGI1027J12803_1002100563	3300000955	Soil	KEVRRTTQNAHVKLTDTQRLHLEELLRDRPQWFKAKVLADIAAEERRDDEEATPRAGLSAYTLACLECELGIM*
JGI1027J12803_1008063671	3300000955	Soil	KLTDAQRSHLEELLRDRPQWFKEKVLADIAAEERRDDEEGNPRVGLSAYTLACLEGELGIM*
JGI1027J12803_1008477452	3300000955	Soil	HLEELLRDRPQWFKEKIMSDIAAEERRDDEEEGNPRAGLSAYTLACLESELGIM*
JGI1027J12803_1009283421	3300000955	Soil	VKLTEAQRSHLDELLRNRPQWFKEKILADIAAEERQDEEENTPRSGLSAYTLACLESELGIM*
JGI1027J12803_1011362082	3300000955	Soil	KEVRRTAQNTHVKLTDPQRSHLEELLRDRPQWFKEKILGDIAAEERRDDKDDTPRAGLSAYTLACLESELGIM*
JGI1027J12803_1027195012	3300000955	Soil	HLEELLRDRPQWFKEKILADIAAEERRDDENDTPRAGLNAYTLACLESELGIM*
JGI1027J12803_1045609781	3300000955	Soil	HLKELLRDRPQWFKEKVLADILAEERRDDEEGTPRAGLSAYTLTCLECELGMM*
F14TB_1017816903	3300001431	Soil	VKLTDAQRSHLEELLRDRPQWFKSKLLADIAAEERRDEDDNPRAGLSAYTLACLESELGIM*
Ga0062593_1029206942	3300004114	Soil	VKLTDTQRSHLEELLRDRPQWFKEKILADIAAEEQRDDQENTPRSGLSAYTLVCLESELGIM*
Ga0063356_1013644532	3300004463	Arabidopsis Thaliana Rhizosphere	VKLTDAQRSHLEELLRDRPQWFKEKILSDIAAEERRDDEEEGTPRAGLSAYTLACLESELGIM*
Ga0063356_1028003222	3300004463	Arabidopsis Thaliana Rhizosphere	VKLTDAQRSHLEELLRERPQWFKAKILSDIAAEERRDDEGTPRAGLSAYTLACLESELGIM*
Ga0063356_1028560122	3300004463	Arabidopsis Thaliana Rhizosphere	VKLTDTQRSHLEELLRDRPQWFKEKILADIAAEERRNDEDDTPRAGLSAYTLACLESELGIL*
Ga0062595_1000947271	3300004479	Soil	VKLTDQQCSHLDELLRDRPQWFKDKILSDIAAEEQREDEEDTPRSGLSAYTLTCPESELGIM*
Ga0062594_1016402012	3300005093	Soil	VKLTDAQRPHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIM*
Ga0066672_109120061	3300005167	Soil	VKLTDTQRSHLEELLRDRPQWFKEKILADITAEERRDDEDATPRTGLSAYTLTC
Ga0066683_105970342	3300005172	Soil	VKLTDTQRSHLEELLRDRSHWFKESVWADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066685_100182092	3300005180	Soil	VKLTDAQHTHLEELLRNRPQWFKEKILADIAAEERRDEEDDTPRTGLSDYTLACLESELSIM*
Ga0066685_100906181	3300005180	Soil	VKLTNAQRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066388_1001594354	3300005332	Tropical Forest Soil	VKLTDTQRAHLTELLHDRPQWFKESVWIQIAAEERRNDDEDDNPRAGLSAYTLACLECELGIM*
Ga0066388_1017275002	3300005332	Tropical Forest Soil	VKLTDAQRSHLEELLRDRPRWFKEKVLADIAAEERRNDEEGTPRAGLSAYTLTCLESELGIM*
Ga0066388_1033131661	3300005332	Tropical Forest Soil	VKLTDTQRSHLAELLRDRPQWFKESVWTAIAAEERRDDDDNLGTGLSAYTLACLECELGIM*
Ga0066388_1061357892	3300005332	Tropical Forest Soil	VKLTDAQRSHLEELLRDRPQWFKEKILADIAAEERRNDEDHAPRAGLSAYALACLESELGIM*
Ga0070675_1007203282	3300005354	Miscanthus Rhizosphere	VKLTDAQRPHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPGAGLSAYTLACLESELGIM*
Ga0070714_1023857142	3300005435	Agricultural Soil	RVDVRLTDAQRSHLEELLRDRPQWFKEKVLADIAAEERRDDEEDTPPTGLSAYTLACLESELGIM*
Ga0066682_100933262	3300005450	Soil	VKLTDAQRSHLEELLRNRPQWFKEKVLADIAAEERRNDEEGTPRAGLSAYTLACLESELGIM*
Ga0066682_103867741	3300005450	Soil	VKLTDTQRSHLEELLRDRSQWFKESVWADIAAEERRDDEDDTPRAGLSTYTLACLESELGIM
Ga0066681_100217162	3300005451	Soil	VKLTNAQRSHLEELLRDRPQWFKAKVLADIAAEERRNDEEGTPRAGLSAYTLACLESELGIM*
Ga0070707_1007410832	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKLTDTQRSHLEELLRDRPHWFKESIWADIAAEERRDDDDDTPRPGLSAYTLACLESELGIM*
Ga0066697_104338251	3300005540	Soil	NKEVRRTAQNAHVKLTNAQRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066707_103889072	3300005556	Soil	VKLTNAQHTHLEELLRNRPQWFKEKILADIAAEERRDEEDDTPRTGLSDYTLACLESELSIM*
Ga0066707_105190092	3300005556	Soil	GNKEVRRTAQNAHVKLTDTQRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066698_105655921	3300005558	Soil	KLTDTQRSHLEELLRDRSHWFKESVWADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066698_111058411	3300005558	Soil	AHVKLTNAQRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066903_10000527010	3300005764	Tropical Forest Soil	VKLTDTQRSHLEELLHDRPQWFKESVWVTIAAEERRKDEDHSPRTGLSAYTLACLECELGIM*
Ga0066903_1002166912	3300005764	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKENVWAAIAAEERRNDDDDNPRAGLSAYTLACLECELGIM*
Ga0066903_1005708214	3300005764	Tropical Forest Soil	VKLTDTQRAHLAELLRDRPHWFKESVWAQIAAEERRNDDDDDNPRAGLSAYTLACLECELGIM*
Ga0066903_1015003102	3300005764	Tropical Forest Soil	QKTHVKLTDTQRSHLEELLHDRPQWFKERVLAEIAAEERRNDEDDNPRIGLSAYTLA*
Ga0066903_1017261702	3300005764	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKESVWTQIAAEERRDDEDDNPRAGLSAYTLACLECELGIM*
Ga0066903_1021665542	3300005764	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKESVWTAIAAEERRDDDDDNPRTGLSAYTLACLEYELGIL*
Ga0066903_1021976031	3300005764	Tropical Forest Soil	VKLTDAQRSHLEELLRERPQWFKEKILADIVAEERRDDEDDTPRTGLSAYALACLESELGIM*
Ga0066903_1025987622	3300005764	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKESVWTAIAAEERRNDDDDNPRTGLSAYTLACLEYELGIM*
Ga0066903_1044418511	3300005764	Tropical Forest Soil	VKLTDTQRAHLEELLRDRPQWFQESIWASIAAEERRDDHDDDNPRAGISAYTLACLEC
Ga0066903_1082224562	3300005764	Tropical Forest Soil	VKLSDVQRSHLEELLRDRPQWFKESVWTAIAAEEPRNDEDDNPRTGLSAYMLACLECELGIM*
Ga0066652_1008136381	3300006046	Soil	RSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0070712_1010332961	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AHVKLTDAQRSHLEELLRDRPEWFKEKILADIAAEERRDDEEDTPRTGLSAYTLACLESELGIM*
Ga0070712_1020448963	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	QRSQLEELLRDRPQWFKEKVMADIAAEERRNDDDDTPRAGLSAYTLACLESELGIM*
Ga0099791_105006141	3300007255	Vadose Zone Soil	VKLTDAQRSHLEELLRDRSQWFKEKILADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0066709_1015363092	3300009137	Grasslands Soil	VKLTDTQRSHLEELLRDRPEWFKESVWADITAEERGDDDDTPRAGLSAYTLACLECELGIM*
Ga0066709_1021400021	3300009137	Grasslands Soil	VKLTDAQRSHLKELLRDRPQWFKEKILADIVAEERRDDGDATPRAGLSAYTLACLESELGIM*
Ga0105249_132903791	3300009553	Switchgrass Rhizosphere	TDAQRPHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPGAGLSAYTLACLESELGIM*
Ga0126374_100423161	3300009792	Tropical Forest Soil	VKLTDTQRKHLEELLRDRPEWFKESVWAEIAAEERRNDDDDNPRPGLSAYTLACLECELGVM*
Ga0126382_100114053	3300010047	Tropical Forest Soil	VKLTDAQRSHLEELLRNRPQWFKEKVLADIAAEERRDDEDDTPRAGLSAYTLACLECELGIM*
Ga0126382_123497741	3300010047	Tropical Forest Soil	VKLTDTQRLHLEELLRDRPQWFKESVWAEIAAEERRNDDDDNPRPGLSAYTLACLECELGVM*
Ga0134064_102424421	3300010325	Grasslands Soil	DTQRSHLEELLRDRPEWFKESVWADIAAEERGDDDDTPRAGLSAYTLACLECELGIM*
Ga0134063_102054322	3300010335	Grasslands Soil	VKLTNAQRSHLKELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM*
Ga0126376_108946501	3300010359	Tropical Forest Soil	TQKTHVKLTDTQRSHLEELLRDRPQWFKESVWVEIAAEERRNDADHNPRASLSAYTLACLECELGIM*
Ga0126376_121820151	3300010359	Tropical Forest Soil	QDADVKLTDAQRSHLEELLRNRPQWFKEKVLADIAAEERRDDEDDTPRAGLSAYTLACLECELGIM*
Ga0126378_115640051	3300010361	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKESVWTEIAAEERRNDDDDNPRTGLSAYTLACLEYELGIM*
Ga0126379_109918322	3300010366	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKESVWTAIAAEERRNDDDDNPRTGLSAYTLACLEYELGIL*
Ga0126379_133604322	3300010366	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPHWFKESVWAQIAAEERRNDDDDDNPRAGLSAYTLACLECELGIM*
Ga0126383_112830903	3300010398	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKESAWTAIAAEERRNDDDDNPRTGLSAYTLACLEYELGIM*
Ga0126383_124804071	3300010398	Tropical Forest Soil	GVRRTTQKTHVKLTDTQRSHLEELLLDRPQWFKESVWTAIAAEERRNDDDDNPRTGLGAYTLACLECELGIM*
Ga0137364_101972843	3300012198	Vadose Zone Soil	LNKHSVNVKAKVGIRHRGLTGAQRAHLEELLRNRPQWFKGKILTDIAAEERRNDEDGIPRTGFSAYTLACLESELGIM*
Ga0137364_103548802	3300012198	Vadose Zone Soil	VKLTDAQRWHLEELLRDRPQWFKEKILADIAAEERRDDEEGTPRTGLSAYTLACLESELGIM*
Ga0137363_100110723	3300012202	Vadose Zone Soil	VKLTDAQRSHLEELLHNRPEWFKEKILADIAAEERRDDEEGTPRAGLNAYTLACLESELGIM*
Ga0137362_111017422	3300012205	Vadose Zone Soil	VKLTDAQRSHLEELLRDRPQWFKEKILVDIAAEERRDDEEGTPRAGLSAYTLACLESELGIM*
Ga0137370_107842732	3300012285	Vadose Zone Soil	RHRGLTGAQRAHLEELLRNRPQWFKGKILTDIAAEERRNDEDGIPRTGFSAYTLACLESELGIM*
Ga0137360_108280881	3300012361	Vadose Zone Soil	VKLTDAQRSHLEELLHNRPEWFKEKILADIAAEERRDDEDDTPRTGLSAYTLACLESELGIM
Ga0137358_104062531	3300012582	Vadose Zone Soil	VKLTDAQRTHLEELLRNRPQWFKEKVLADIAAEERRNDDGDTPRSGLSAYTLACLECELGIM*
Ga0157303_100207952	3300012896	Soil	VKLTDAQRAHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLPCLESELGIM*
Ga0157299_101112901	3300012899	Soil	TQNADVKLTDAQRAHLEELLRDRPQWIKEKILADIASEERRDDEDDNPRAGLSAYTLACLESELGIM*
Ga0157286_102962982	3300012908	Soil	VKLTDAQRSHLEELLRDRPQWFKEKILSDIAAEEQRDNQESTPRSGLSAYTLACLESELGIM*
Ga0137404_100215002	3300012929	Vadose Zone Soil	LNKHSVNVKAKVGIRHRGLTGAQRAHLEELLRNRPQWFKGKILADIAAEERRNDEDGIPRTGFSAYTLACLESELGIM*
Ga0164301_104159812	3300012960	Soil	VKLTDAQRAHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIV*
Ga0164302_117738662	3300012961	Soil	VKLTDTQRAHLEELLRDRPQWFKEKILADIAAEERRDDDEGTSRAGLSAYTLACLESELGIM*
Ga0126369_120837941	3300012971	Tropical Forest Soil	RSHLEELLRDRPQWFKESVWTAIAAEERRDDDDDNPRTGLSAYTLACLEYELGIM*
Ga0164304_105485862	3300012986	Soil	TQNADVKLTDAQRARLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIV*
Ga0137403_109787862	3300015264	Vadose Zone Soil	KHSVNVKAKVGIRHRGLTGAQRAHLEELLRNRPQWFKGKILADIAAEERRNDEDGIPRTGFSAYTLACLESELGIM*
Ga0134089_102192152	3300015358	Grasslands Soil	VKVTNAQRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLE
Ga0134083_104501442	3300017659	Grasslands Soil	VKLTDAQRSHLEELLRNRPQWFKEKVLADIAAEERRNDEEGTPRAGLSAYTLACLESELSIM
Ga0184635_101559001	3300018072	Groundwater Sediment	VKLTDAQRSHLEELLRDRPQWFKAKVLADIAAEERRDDEEGTPRAGLSAYTLACLESELGIM
Ga0066655_100048226	3300018431	Grasslands Soil	VKLTDAQHTHLEELLRNRPQWFKEKILADIAAEERRDEEDDTPRTGLSDYTLACLESELSIM
Ga0066667_113943462	3300018433	Grasslands Soil	VKLTDAQRSHLKELLRDRPQWFKEKILADIVAEERRDDGDATPRAGLSAYTLACLE
Ga0066669_107805961	3300018482	Grasslands Soil	RTAQNAHVKLTDTQRSHLEELLRDRSHWFKESVWADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM
Ga0173481_104452161	3300019356	Soil	EETKKYVGTTQNADVKLTDAQRAHLEELLRDRPQWFKEKILADIASEERRDDEDDNPRAGLSAYTLACLESELGIM
Ga0173482_103696622	3300019361	Soil	LGSNVYKAAHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIM
Ga0193727_10048651	3300019886	Soil	RTAQNAHVKLTDAQRSHLEELLRDRPQWFNEKILADIAAEERRDDEEGTPRAGLSAYTLACLESELGIM
Ga0193727_10818402	3300019886	Soil	VKLTDAQRSHLEELLRDRPQWFKEKILADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM
Ga0210403_100075702	3300020580	Soil	MPLPQRLNLDRDLEELLRDRPQLFKEKILADIAAEERLDDEEDSPRTGLSAYTLVCLESELGIM
Ga0193719_100271021	3300021344	Soil	VKLTNAQRSHLEELLRDRPQWFKEKILADIVAEERRDDEDATPRAGFSAYTLACLESELGIM
Ga0126371_107338033	3300021560	Tropical Forest Soil	VKLTDTQRSHLEELLRDRPQWFKENVWAAIAAEERRNDDDDNPRAGLSAYTLACLECELGIM
Ga0207646_102874432	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VKLTDTQRSHLEELLRDRPHWFKESIWADIAAEERRDDDDDTPRPGLSAYTLACLESELGIM
Ga0207701_102721443	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VKLTDAQRPHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIM
Ga0209468_10145413	3300026306	Soil	VKLTDAQRSHLEELLRNRPQWFKEKVLADIAAEERRNDEEGTPRAGLSAYTLACLESELGIM
Ga0209469_10537581	3300026307	Soil	VKLTDAQHTHLEELLRNRPQWFKEKILADIAAEERRDEEDDTPRTGLSDYTLACLESEL
Ga0209470_10217896	3300026324	Soil	VKLTNAQRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM
Ga0209470_11348532	3300026324	Soil	VKLTDTQRSHLEELLRDRSHWFKESVWADIAAEERRDDEDDTPRAGLSAYTLACLESELGIM
Ga0209159_10218542	3300026343	Soil	VKLTDTQRSHLEELLRDRPQWFKEKILADIAAEERRDEEDDTPRTGLSDYTLACLESELGIM
Ga0257146_10639741	3300026374	Soil	VKLTDAQRSHVEELLRNRPQWFKEKILADIAAEERRDDEEGTPRAGLSAYTLACLESELGIM
Ga0209157_12685361	3300026537	Soil	QRSHLEELLRDRPQWFKEKVLGDIAGEERRDDEDDTPRAGLSAYTLACLESELGIM
Ga0208475_10101333	3300027018	Soil	VKLTDAQRAHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIM
Ga0170824_1051919791	3300031231	Forest Soil	VKLTEAQRSHLDELLRNRPQWFKEKILADIAAEERRDEDDDTPRAGLSAYTLACLESELGIM
Ga0170824_1078653752	3300031231	Forest Soil	MKLTEAQRSHLDEILQDRPQWFKDRILADIAAEERRDDEDDTPRSGLSAYTLACLESELGIM
Ga0170824_1200195672	3300031231	Forest Soil	VKLTEAQHSHLEELLRDRPHWFKEKILADIASEERRDDEEGTPRAGLSAYTLACLE
Ga0170824_1268542631	3300031231	Forest Soil	VKLTEVQRSHLEELLRDRPQWFKEKIMADIAAEERRDDEDDTPRAGLSTYQLACLESELGIM
Ga0170824_1285662151	3300031231	Forest Soil	VKLTDAQRSHLEELLRDRPEWFKEKILADIAAEERRDDEEDTPRTGLSAYTLACLESELGIM
Ga0170824_1286973722	3300031231	Forest Soil	VKLTEAQRSHLDELLRDRPQWFKEKILSDIAAEERLDDEDTPRTGLSAYTLACLEGELGI
Ga0170820_123955371	3300031446	Forest Soil	QNAHVKLTDDQRSHLEELLRDRPQWFKEKIMADIAAEERRDDEDDTPRAGLSTYQLACLESELGIM
Ga0170820_129265051	3300031446	Forest Soil	VKLTEVQRSHLEELVRDRPQWFKEKIMADIAAEERRDDGDDTPRAGLSAYALACLESELGIM
Ga0170818_1005377571	3300031474	Forest Soil	VKLTDAQRSHLDELLRNRPQWFKEKILADIAAEERRDEDDDTPRAGLSAYTLACLESELGIM
Ga0170818_1101388993	3300031474	Forest Soil	VKLTEVQRSHLEELLRDRPQWFKEKIMADIAAEERRDDEDDTPRAGLSAYQLACLESELGIM
Ga0307472_1006785302	3300032205	Hardwood Forest Soil	VKLTDTQRSHLEELLRDRPQWFKEKVLADITAEERRNDDDTPRAGLSAYTLACLECELGI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069142

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences