NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F069443

Metagenome / Metatranscriptome Family F069443

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F069443
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 42 residues
Representative Sequence RFHNICLGFGYREAEIIPAKMEIEEWCREHLEHLESKFR
Number of Associated Samples 107
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.81 %
% of genes near scaffold ends (potentially truncated) 98.39 %
% of genes from short scaffolds (< 2000 bps) 96.77 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (46.774 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(25.806 % of family members)
Environment Ontology (ENVO) Unclassified
(57.258 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.871 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.25%    β-sheet: 0.00%    Coil/Unstructured: 50.75%
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5101520253035RFHNICLGFGYREAEIIPAKMEIEEWCREHLEHLESKFRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
53.2%46.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater
Marine
Surface Seawater
Marine
Aqueous
Sackhole Brine
Freshwater To Marine Saline Gradient
Marine
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Pelagic Marine
Seawater
Saline Lake
Saline Water
Pond Water
Sediment
Macroalgal Surface
14.5%10.5%3.2%25.8%4.8%4.0%9.7%4.8%8.9%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
BBAY93_1013247113300000973Macroalgal SurfaceFQSVCMGFGYREAEIIPVKMEIEEWCREHLEHLESKFR*
JGI20152J14361_1011325113300001344Pelagic MarinePDKFADRFQHICFGFGYXEAEIIPAKNEIREWCQEHLSHLESKFR*
JGI20151J14362_1016833933300001346Pelagic MarineRFHNICLGFGYREAEIIPAKMEIEEWCREHLEHLESKFR*
JGI20160J14292_1015327833300001349Pelagic MarineHSICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR*
JGI24006J15134_1006048513300001450MarineDRFQHICFGFGYREAEIIPMKSEIKEWCQEHLDHLESKFR*
JGI24003J15210_1018388623300001460MarineMSPEKFADRFQHICFGFGYRESEIIPQKHEIKEWCQEHLDKLESRFG*
GOS2226_102720813300001943MarineLMGPKKFGERFHDICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR*
Ga0066835_1022209033300005606MarineVCLGFGYREAEIIPAKLEIEEWCREHLLHLESKFR*
Ga0075108_1010643313300005913Saline LakeRFQHICFGFGYREAEIIPQKLEIKEWCQEHLDKLESRFR*
Ga0075117_114275043300005914Saline LakeADRFQHICFGFGYREAEIIPQKLEIKEWCQEHLDKLESRFR*
Ga0075117_118121613300005914Saline LakePDKFADRFQHICFGFGYREAEIIPQKLEIKEWCQEYLDKLESRFR*
Ga0075462_1005246363300006027AqueousCLGFGYREAEIIPAKMEIEEWCREHLDHLESKFR*
Ga0075461_1019205933300006637AqueousVCMGFGYREAEIIPAKMEIFDWCRDYLQGLENKFR*
Ga0070754_1048000833300006810AqueousFHNVCLGFGYREAEIIPAKMEIEEWCREHLTHLESKFR*
Ga0075476_1025975333300006867AqueousFAERFHNVCLGFGYREAEIIPAKMEIEEWCQEHLSHLESKFR*
Ga0075479_1020444053300006870AqueousKSFAERFHNVCLGFGYREAEIIPAKMEIEEWCREHLDHLESKFR*
Ga0070746_1039418013300006919AqueousALMGPKKFGERFHDICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR*
Ga0075460_1032432113300007234AqueousRFHDVCLGYGYREAEIIPAKEDIEDWCRDHLLHLENKFR*
Ga0099850_128950613300007960AqueousQTFANRFQSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLENKFR*
Ga0118687_1040641413300009124SedimentPQTFAERFQSVCMGFGYREAEIIPAKLEIFDWCREYLQKMETKVR*
Ga0114995_1006845613300009172MarineRFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR*
Ga0115551_127158513300009193Pelagic MarineGPDKFADRFQHICFGFGYREAEIIPAKNEIREWCQEHLDHLESKFR*
Ga0115548_124404233300009423Pelagic MarineGPKKFGERFHSICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR*
Ga0115545_103897763300009433Pelagic MarineGPDKFADRFQHICFGFGYREAEIIPAKNEIREWCQEHLSHLESKFR*
Ga0115562_111906443300009434Pelagic MarineFHNICLGFGYREAEIIPAKMEIEEWCREHLEHLESKFR*
Ga0115559_133530613300009438Pelagic MarineLMGPKKFGERFHSICLGFGYRESEIIPLKMEIEEWCHEHLSHLESKFR*
Ga0115559_133819313300009438Pelagic MarineMGPKKFGERFHSICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR*
Ga0115558_129335613300009449Pelagic MarineSICLGFGYRESEIIPLKMEIEEWCQEHLSHLESKFR*
Ga0115554_108478013300009472Pelagic MarineCFGFGYREAEIIPAKNEIRELCQEHLSHLESKFR*
Ga0115554_113348343300009472Pelagic MarineKKFGERFHSICLGFGYRESEIIPLKMEIEEWCQEHLSHLESKFR*
Ga0115571_112217713300009495Pelagic MarineCFGFGYREAEIIPAKNEIREWCQEHLDHLESKFR*
Ga0115003_1070007333300009512MarineFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR*
Ga0115104_1096405843300009677MarineQHICFGFGYREAEIIPAKNEIKEWCQEHLSHLESKFR*
Ga0115012_1123915713300009790MarineKTFAKRFHDVCLGFGFREAEIIPAKMEIEEWCREHLLTLENKFR*
Ga0098059_130726013300010153MarinePEKFADRFQAICFGFGYREAEIIPTKNEIKEWCQEYLSHLESKFR*
Ga0129342_135313813300010299Freshwater To Marine Saline GradientTFAERFHSVCMGFGYREAEIIPAKMEIEDWCREHLLHLENKFR*
Ga0136656_113538143300010318Freshwater To Marine Saline GradientVCLGFGYREAEIIPAKMEIEEWCQDHLSHLESKFR*
Ga0129324_1006525113300010368Freshwater To Marine Saline GradientSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLETKFR*
Ga0129324_1015339513300010368Freshwater To Marine Saline GradientRFADRFQSVCMGFGYREAEIIPAKMEIEEWCRDHLSHLESKFR*
Ga0163111_1076689213300012954Surface SeawaterMGPDKFADRFQAICLGFGYREAEIIPAKSEIKEWCQEHLNHLESKFR*
Ga0181369_106226013300017708MarineEDALMGPDKFGERFHSICLGFGYREAEIIPLKLEIIEWCREHLLHLESKFR
Ga0181369_107749413300017708MarineMGPKKFGERFHSICLGFGYRESEIIPAKMEMEEWCREHLSHLESKFR
Ga0181404_114064413300017717SeawaterLMGPKKFGERFHSICLGFGYRESEIIPAKMEIEEWCQEHLSHLESKFR
Ga0181390_112673833300017719SeawaterNHNICLGFGYREAEIIPMKMEIEEWCQEHLAHLESKFR
Ga0181398_103781813300017725SeawaterRFQHICFGFGYREAEIIPAKNEIKEWCQEHLSHLESKFR
Ga0181389_102152973300017746SeawaterGPKMFGERFHNICLGFGYREAEIIPMKMEIEEWCQEHLAHLESKFR
Ga0181389_120854423300017746SeawaterNVCLGFGYREAEIIPTKIEIEEWCREHLLHLENKFR
Ga0181393_113125633300017748SeawaterRERFHSICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR
Ga0181420_103501613300017757SeawaterFGERFHNICLGFGYREAEIIPAKNEIKEWCQEHLSHLESKFR
Ga0181385_108622653300017764SeawaterERFHNICLGFGYREAEIIPMKMEIEEWCQEHLAHLESKFR
Ga0181413_104470053300017765SeawaterLMGPKMFGERFHNICLGFGYREAEIIPMKMEIEEWCQEHLAHLESKFR
Ga0181425_113081513300017771SeawaterMGPDKFADRFQHICFGFGYREAEIIPAKNEIKEWCQEHLSHLESKFR
Ga0181424_1033001733300017786SeawaterMGPKMFGERFHNICLGFGYREAEIIPMKMEIEEWCQEHLAHLESKFR
Ga0181565_1072583143300017818Salt MarshHSVCLGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0181552_1029603213300017824Salt MarshMTPQTFADRFQSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLENKFR
Ga0181584_1022446813300017949Salt MarshAERFHSVCMGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0181607_1052243833300017950Salt MarshDALMGPKKFGERFHNICLGFGYRESEIIPAKMEIEEWCREHLENLESKFR
Ga0181577_1056973713300017951Salt MarshKKFGERFHNICLGFGYRESEIIPAKMEIEDWCREHLEHLESKFR
Ga0181583_1084879613300017952Salt MarshMGPDKFGERFHNICLGFGYRESEIIPAKMEIEEWCREHLEHLESKFR
Ga0181590_1038406413300017967Salt MarshPQTFADRFQSVCMGFGYREAEIIPAKMEIFDWCRDYLQSLENKFR
Ga0181569_1086176713300017986Salt MarshTFAERFHNVCLGFGYREAEIIPAKMEIEEWCREHLLTLENKFR
Ga0181600_1050582213300018036Salt MarshALMGPKKFGERFHNICLGFGYRESEIIPAKMEIEEWCREHLSHLESKFR
Ga0181606_1006801213300018048Salt MarshSPKTFAERFHSVCMGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0181572_1032134143300018049Salt MarshICLGFGYREAEIIPTKMEIEEWCREHLLHLESKFR
Ga0181572_1036823243300018049Salt MarshKTFAERFHNVCLGFGYREAEIIPAKMEIEEWCREHLLTLENKFR
Ga0181561_1032555713300018410Salt MarshPKKFGDRFHNICLGFGYREAEIIPAKIEIEEWCREHLSHLESKFR
Ga0181561_1034536613300018410Salt MarshRFQSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLENKFR
Ga0181560_1029522013300018413Salt MarshALMTPQTFADRFQSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLETKFR
Ga0181559_1025471643300018415Salt MarshMGPKKFGERFHNICLGFGYRESEIIPAKMEIEDWCREHLSHLESKFR
Ga0181558_1035357343300018417Salt MarshRFHNICLGFGYRESEIIPAKMEIEDWCREHLEHLESKFR
Ga0181567_1066498313300018418Salt MarshFAERFHSVCLGFGFREAEIIPAKMEIEEWCREHLSHLENKFR
Ga0181591_1078974813300018424Salt MarshHSVCMGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0181564_1050381213300018876Salt MarshKFGERFHNICLGFGYREAEIIPLKLEIIDWCREHLLHLESKFR
Ga0194029_104438113300019751FreshwaterMTPQTFADRFQSVCMGFGYREAEIIPAKMELFDWCRDYLQNLENKFR
Ga0181595_1022455943300020053Salt MarshGERFHNICLGFGYRESEIIPAKMEIEQWCQEHLSHLESKFR
Ga0181605_1043015333300020188Salt MarshKFGERFHNICLGFGYRESEIIPAKMEIEQWCQEHLSHLESKFR
Ga0181597_1040945833300020194Salt MarshKKFGERFHNICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR
Ga0211652_1016404143300020379MarinePDKFADRFQYICFGFGYREAEIIPAKNEIKEWCQEHLSHLESKFR
Ga0211636_1025117543300020400MarineFAERFQNVCMGFGYREAEIIPMKMEIEDWCREHLLHLESKFR
Ga0211521_1034305313300020428MarinePKTFAERFQNVCLGFGYREAEIIPAKSEIEEWCREHLLHLESKFR
Ga0211576_1062530313300020438MarineICFGFGYREAEIIPAKNEIKEWCQEHLSHLESKFR
Ga0181557_120096633300020601Salt MarshALMGPKKFGERFHNICLGFGYRESEIIPAKMEIEDWCREHLEHLESKFR
Ga0222718_1016822213300021958Estuarine WaterADRFQHVCFGFGYREAEIIPQKHEIKEWCQEHLDKLEGRFR
Ga0222716_1037551753300021959Estuarine WaterQSVCMGFGYREAEIIPAKMEIEEWCREHLLHLESKFR
Ga0222716_1038245843300021959Estuarine WaterKKFGERFHNICLGFGYRESEIIPAKMEIEEWCQEHLSHLESKFR
Ga0222715_1034868413300021960Estuarine WaterVCLGYGYREPEIIPAKEEIEDWCREHLLHLESKFR
Ga0222719_1055085033300021964Estuarine WaterKKFGERFHNICLGFGYRESEIIPAKMEIEEWCREHLSHLESKFR
Ga0196901_117630713300022200AqueousDRFHSVCLGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0255765_121643213300022921Salt MarshMGPKKFGERFHNICLGFGYRESEIIPAKMEIEQWCQEHLSHLESKFR
Ga0255783_1032327233300022923Salt MarshLMGPKKFGERFHNICLGFGYRESEIIPAKMEIEEWCREHLEHLESKFR
Ga0255752_1028084913300022929Salt MarshFHNICLGFGYRESEIIPAKMEIEDWCREHLEHLESKFR
Ga0255770_1011564153300022937Salt MarshDALMGPKKFGERFHNICLGFGYRESEIIPAKMEIEDWCREHLSHLESKFR
Ga0255770_1015131253300022937Salt MarshFHSVCMGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0255776_1017921413300023173Salt MarshALMGPKKFGERFHNICLGFGYRESEIIPAKMEIEEWCREHLEHLESKFR
Ga0255776_1030004843300023173Salt MarshLMGPKKFGERFHNICLGFGYRESEIIPAKMEIEDWCREHLSHLESKFR
Ga0222676_102996043300023240Saline WaterLMSPKKFAERFHSVCLGFGYREAEIIPMKFEIEQWCQEHLDHLESRFR
Ga0209535_110558343300025120MarineRFQHICFGFGYREAEIIPQKHEIKEWCQEYLDKLESRFR
Ga0209535_112773513300025120MarineRFQHICFGFGYREAEIIPMKSEIKEWCQEHLDHLESKFR
Ga0208919_115577613300025128MarineALMGPKKFGERFHNICLGFGYREAEIIPAKMEMEEWCQGHLSHLESKFR
Ga0209557_112114913300025483MarineQHICFGFGYREAEIIPQKHEIREWCQEHLDKLESRFR
Ga0208903_109142043300025502Saline LakeADRFQHICFGFGYREAEIIPQKLEIKEWCQEHLDKLESRFR
Ga0209195_111618813300025590Pelagic MarineKKFGERFHSICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR
Ga0208768_107246653300025601Saline LakeRFQHICFGFGYREAEIIPQKLEIKEWCQEHLDKLESRFR
Ga0208149_105755153300025610AqueousAERFHSVCLGFGYREAEIIPAKMEIEDWCREHLLHLESKFR
Ga0208149_113948013300025610AqueousSVCMGFGYREAEIIPAKMELFDWCRDYLQNLENKFR
Ga0209406_116141913300025694Pelagic MarineMGPKKFGERFHSICLGFGYRESEIIPAKMEIEEWCQEHLTHLESKFR
Ga0208425_112606813300025803AqueousSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLENKFR
Ga0208542_120818513300025818AqueousRFHDVCLGYGYREAEIIPAKEDIEDWCRDHLLHLENKFR
Ga0209631_1052398833300025890Pelagic MarinePKKFGERFHSICLGFGYREAEIIPLKMEIEQWCEEHLGKLESKFI
Ga0209630_1018562613300025892Pelagic MarineFAERFHNVCLGFGYREAEIIPAKMEIEEWCREHLEHLESKFR
Ga0209425_1010544853300025897Pelagic MarinePDKFADRFQHICFGFGYREAEIIPAKNEIREWCQEHLSHLESKFR
Ga0209929_111354543300026187Pond WaterQSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLENKFR
Ga0209929_116870413300026187Pond WaterADRFQSVCMGFGYREAEIIPAKMEIFDWCRDYLQNLETKFR
Ga0233450_1027609413300028115Salt MarshFGERFHNICLGFGYRESEIIPAKMEIEDWCREHLEHLESKFR
Ga0257114_126158113300028196MarineALMGPDKFADRFQHICFGFGYREAEIIPMKLEIKEWCQEHLDHLESKFR
Ga0307488_1074391413300031519Sackhole BrineMSADKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEYLDKLESRFR
Ga0307488_1080956023300031519Sackhole BrineMSPDKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR
Ga0302137_127685443300031588MarineMSPKKFAERFHSVCLGFGYREAEIIPMKFEIEQWCQEHLDKLESRFR
Ga0302131_128729443300031594MarineHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR
Ga0302134_1037865233300031596MarineQHICFGFGYREAEIIPQKHEIKAWCQEHLDKLESRFR
Ga0302121_1009705653300031626MarineQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR
Ga0302121_1011169543300031626MarineFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR
Ga0302121_1012006113300031626MarineQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLEGRFR
Ga0302118_1054967123300031627MarineICFGFGYREAEIIPQKHEIKEWCQEYLDKLESRFR


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