Metagenome / Metatranscriptome Family F069485

Basic Information
Family ID	F069485
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	43 residues
Representative Sequence	MASGLRVPHKQAAHMAAPTEGQNIKKALANGEPSTHGAKRTLG
Number of Associated Samples	105
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.29 %
% of genes near scaffold ends (potentially truncated)	56.45 %
% of genes from short scaffolds (< 2000 bps)	86.29 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Most Common Taxonomy
Group	Unclassified (63.710 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (10.484 % of family members)
Environment Ontology (ENVO)	Unclassified (23.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.387 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.23% β-sheet: 0.00% Coil/Unstructured: 95.77%
Feature Viewer

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Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF02371	Transposase_20	63.71
PF00589	Phage_integrase	1.61
PF02534	T4SS-DNA_transf	1.61
PF07568	HisKA_2	0.81
PF01145	Band_7	0.81
PF05598	DUF772	0.81
PF00765	Autoind_synth	0.81
PF07364	DUF1485	0.81
PF05901	Excalibur	0.81
PF07995	GSDH	0.81
PF00813	FliP	0.81
PF13546	DDE_5	0.81
PF07589	PEP-CTERM	0.81
PF02321	OEP	0.81
PF02133	Transp_cyt_pur	0.81
PF00246	Peptidase_M14	0.81
PF01548	DEDD_Tnp_IS110	0.81
PF07310	PAS_5	0.81
PF07519	Tannase	0.81
PF12412	DUF3667	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	64.52
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.61
COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	Intracellular trafficking, secretion, and vesicular transport [U]	1.61
COG3916	N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis)	Signal transduction mechanisms [T]	1.61
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.81
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.81
COG5388	Uncharacterized conserved protein	Function unknown [S]	0.81
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	0.81

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
All Organisms	root	All Organisms	36.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
cellular organisms	root	All Organisms → cellular organisms	36.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.84 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.61 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.61 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.81 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	3.23 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	1.61 %
unclassified Rhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae	1.61 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	0.81 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.81 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.81 %
Defluviicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	1.61 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	1.61 %
Phenylobacterium zucineum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	0.81 %
Brevundimonas nasdae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas nasdae	0.81 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.81 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.71 %
Sinorhizobium medicae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	1.61 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	1.61 %
Phenylobacterium zucineum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	0.81 %
Brevundimonas nasdae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas nasdae	0.81 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.81 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001372\|YBBDRAFT_1066121	Not Available	586	Open in IMG/M
3300001414\|JGI20174J14864_1002675	Not Available	973	Open in IMG/M
3300001664\|P5cmW16_1066908	Not Available	591	Open in IMG/M
3300002245\|JGIcombinedJ26739_101529256	Not Available	563	Open in IMG/M
3300003369\|JGI24140J50213_10054873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	1402	Open in IMG/M
3300004003\|Ga0055445_10214044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	659	Open in IMG/M
3300004082\|Ga0062384_101482747	Not Available	502	Open in IMG/M
3300005541\|Ga0070733_10383774	Not Available	934	Open in IMG/M
3300005543\|Ga0070672_100256874	Not Available	1473	Open in IMG/M
3300005591\|Ga0070761_11118854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	501	Open in IMG/M
3300005602\|Ga0070762_10313513	Not Available	991	Open in IMG/M
3300005610\|Ga0070763_10095758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	1490	Open in IMG/M
3300005900\|Ga0075272_1068374	Not Available	665	Open in IMG/M
3300005921\|Ga0070766_10866526	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300005921\|Ga0070766_11083643	Not Available	553	Open in IMG/M
3300005944\|Ga0066788_10021383	Not Available	1432	Open in IMG/M
3300005949\|Ga0066791_10017118	Not Available	1487	Open in IMG/M
3300006174\|Ga0075014_100854476	Not Available	542	Open in IMG/M
3300006174\|Ga0075014_101023604	Not Available	502	Open in IMG/M
3300006176\|Ga0070765_100769983	Not Available	909	Open in IMG/M
3300006176\|Ga0070765_101620088	Not Available	608	Open in IMG/M
3300006638\|Ga0075522_10105946	Not Available	1515	Open in IMG/M
3300006638\|Ga0075522_10308568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300009137\|Ga0066709_104142548	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300009175\|Ga0073936_10053386	All Organisms → cellular organisms → Bacteria → Proteobacteria	3709	Open in IMG/M
3300009175\|Ga0073936_10126644	All Organisms → cellular organisms → Bacteria	1991	Open in IMG/M
3300009628\|Ga0116125_1062386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas nasdae	961	Open in IMG/M
3300009635\|Ga0116117_1014762	Not Available	1993	Open in IMG/M
3300009650\|Ga0105857_1062917	Not Available	976	Open in IMG/M
3300009651\|Ga0105859_1008647	All Organisms → cellular organisms → Bacteria	2636	Open in IMG/M
3300009662\|Ga0105856_1039002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	1336	Open in IMG/M
3300010343\|Ga0074044_10150382	Not Available	1558	Open in IMG/M
3300010396\|Ga0134126_10000221	All Organisms → cellular organisms → Bacteria → Proteobacteria	74263	Open in IMG/M
3300012008\|Ga0120174_1045134	Not Available	1241	Open in IMG/M
3300012990\|Ga0159060_1038270	Not Available	1247	Open in IMG/M
3300012990\|Ga0159060_1046950	Not Available	1125	Open in IMG/M
3300014168\|Ga0181534_10371496	Not Available	785	Open in IMG/M
3300014495\|Ga0182015_10053223	Not Available	2949	Open in IMG/M
3300014501\|Ga0182024_10011942	All Organisms → cellular organisms → Bacteria → Proteobacteria	17310	Open in IMG/M
3300014501\|Ga0182024_10094776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4375	Open in IMG/M
3300014501\|Ga0182024_10181455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2907	Open in IMG/M
3300014501\|Ga0182024_10336796	Not Available	1977	Open in IMG/M
3300014501\|Ga0182024_10525773	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300014501\|Ga0182024_10754352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300014657\|Ga0181522_10289838	Not Available	971	Open in IMG/M
3300015167\|Ga0167661_1058660	Not Available	718	Open in IMG/M
3300015190\|Ga0167651_1032740	Not Available	1123	Open in IMG/M
3300015194\|Ga0167666_1028555	Not Available	1481	Open in IMG/M
3300015195\|Ga0167658_1115326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	546	Open in IMG/M
3300018034\|Ga0187863_10099197	Not Available	1633	Open in IMG/M
3300018034\|Ga0187863_10129924	Not Available	1407	Open in IMG/M
3300018037\|Ga0187883_10090226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	1598	Open in IMG/M
3300018038\|Ga0187855_10143985	Not Available	1424	Open in IMG/M
3300018043\|Ga0187887_10639803	Not Available	628	Open in IMG/M
3300018047\|Ga0187859_10296620	Not Available	874	Open in IMG/M
3300020027\|Ga0193752_1092027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1251	Open in IMG/M
3300020583\|Ga0210401_10329730	Not Available	1387	Open in IMG/M
3300021404\|Ga0210389_11485851	Not Available	515	Open in IMG/M
3300021407\|Ga0210383_10075072	All Organisms → cellular organisms → Bacteria	2827	Open in IMG/M
3300021433\|Ga0210391_10230360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	1455	Open in IMG/M
3300021475\|Ga0210392_10114074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1799	Open in IMG/M
3300021475\|Ga0210392_10206795	Not Available	1372	Open in IMG/M
3300021475\|Ga0210392_10815154	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300021479\|Ga0210410_10998243	Not Available	726	Open in IMG/M
3300021976\|Ga0193742_1080184	Not Available	1227	Open in IMG/M
3300022555\|Ga0212088_10022492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8311	Open in IMG/M
3300022555\|Ga0212088_10032043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6326	Open in IMG/M
3300025304\|Ga0209257_1118329	Not Available	623	Open in IMG/M
3300025406\|Ga0208035_1053343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	624	Open in IMG/M
3300025457\|Ga0208850_1060546	Not Available	621	Open in IMG/M
3300025482\|Ga0208715_1016090	Not Available	1460	Open in IMG/M
3300025494\|Ga0207928_1018238	Not Available	1364	Open in IMG/M
3300025504\|Ga0208356_1050824	Not Available	826	Open in IMG/M
3300025509\|Ga0208848_1010919	Not Available	1902	Open in IMG/M
3300025544\|Ga0208078_1023696	Not Available	1378	Open in IMG/M
3300025627\|Ga0208220_1038996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1437	Open in IMG/M
3300025634\|Ga0208589_1031153	Not Available	1449	Open in IMG/M
3300025878\|Ga0209584_10057719	Not Available	1387	Open in IMG/M
3300025931\|Ga0207644_10195040	Not Available	1594	Open in IMG/M
3300025940\|Ga0207691_10397906	Not Available	1175	Open in IMG/M
3300026216\|Ga0209903_1013232	Not Available	1445	Open in IMG/M
3300026220\|Ga0209855_1062089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300026222\|Ga0209862_1044232	Not Available	822	Open in IMG/M
3300026274\|Ga0209888_1080233	Not Available	589	Open in IMG/M
3300026276\|Ga0209847_1027765	Not Available	1167	Open in IMG/M
3300026281\|Ga0209863_10172061	Not Available	631	Open in IMG/M
3300027031\|Ga0208986_1035500	Not Available	540	Open in IMG/M
3300027567\|Ga0209115_1025786	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300027692\|Ga0209530_1208031	Not Available	538	Open in IMG/M
3300027803\|Ga0209910_10033009	Not Available	567	Open in IMG/M
3300028379\|Ga0268266_10313625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1466	Open in IMG/M
3300028577\|Ga0265318_10013809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3402	Open in IMG/M
3300028779\|Ga0302266_10067694	Not Available	1534	Open in IMG/M
3300028909\|Ga0302200_10333623	Not Available	719	Open in IMG/M
3300029903\|Ga0247271_104029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2848	Open in IMG/M
3300029922\|Ga0311363_10174569	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300029922\|Ga0311363_10214019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2311	Open in IMG/M
3300030041\|Ga0302274_10069940	Not Available	1977	Open in IMG/M
3300030045\|Ga0302282_1262271	Not Available	635	Open in IMG/M
3300030842\|Ga0075404_11362904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300031128\|Ga0170823_13345328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	937	Open in IMG/M
3300031231\|Ga0170824_104606714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3420	Open in IMG/M
3300031231\|Ga0170824_105766753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	522	Open in IMG/M
3300031231\|Ga0170824_125529913	Not Available	985	Open in IMG/M
3300031240\|Ga0265320_10090793	Not Available	1415	Open in IMG/M
3300031250\|Ga0265331_10036730	All Organisms → cellular organisms → Bacteria → Proteobacteria	2404	Open in IMG/M
3300031446\|Ga0170820_12097894	Not Available	1369	Open in IMG/M
3300031474\|Ga0170818_111056684	Not Available	545	Open in IMG/M
3300031525\|Ga0302326_12713790	Not Available	615	Open in IMG/M
3300031595\|Ga0265313_10077060	Not Available	1522	Open in IMG/M
3300031616\|Ga0307508_10645902	Not Available	663	Open in IMG/M
3300031715\|Ga0307476_10968460	Not Available	627	Open in IMG/M
3300031718\|Ga0307474_10516113	Not Available	938	Open in IMG/M
3300031718\|Ga0307474_11201896	Not Available	599	Open in IMG/M
3300031823\|Ga0307478_10252850	Not Available	1432	Open in IMG/M
3300031884\|Ga0316220_1217451	Not Available	654	Open in IMG/M
3300032061\|Ga0315540_10094143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1381	Open in IMG/M
3300032133\|Ga0316583_10055884	Not Available	1387	Open in IMG/M
3300032560\|Ga0316223_1120403	Not Available	904	Open in IMG/M
3300032561\|Ga0316222_1319532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	504	Open in IMG/M
3300032562\|Ga0316226_1148103	Not Available	1032	Open in IMG/M
3300032722\|Ga0316231_1394094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	515	Open in IMG/M
3300032954\|Ga0335083_11211659	Not Available	585	Open in IMG/M
3300033475\|Ga0310811_10002976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21277	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.52%
Host-Associated	Host-Associated	8.87%
Engineered	Engineered	1.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.55%
Aquatic	Environmental → Aquatic	20.97%
Plants	Host-Associated → Plants	8.87%
Wastewater	Engineered → Wastewater	1.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.90%
Freshwater	Environmental → Aquatic → Freshwater	16.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.26%
Peat	Environmental → Terrestrial → Peat	5.65%
Marine	Environmental → Aquatic → Marine	2.42%
Sediment	Environmental → Aquatic → Sediment	1.61%
Roots	Host-Associated → Plants → Roots	1.61%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.68%
Loam	Environmental → Terrestrial → Soil → Loam	8.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.65%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.03%
Lake	Environmental → Aquatic → Freshwater → Lake	3.23%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.61%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Endophytes	Host-Associated → Plants → Roots → Endophytes	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.32%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	15.32%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	12.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.06%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.65%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.03%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.61%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.81%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.81%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.26%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	5.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.84%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	4.03%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	3.23%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	3.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.23%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.42%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.42%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.61%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.61%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.81%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.81%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.81%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.81%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.81%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.81%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	0.81%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001372	YB-Back-sed	Environmental	Open in IMG/M
3300001414	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012	Environmental	Open in IMG/M
3300001664	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembled	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004003	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005900	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005949	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental	Open in IMG/M
3300012990	Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015	Engineered	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015190	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4a, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015194	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1c, glacier snout)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021976	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300025304	Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025544	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026216	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)	Environmental	Open in IMG/M
3300026220	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063 (SPAdes)	Environmental	Open in IMG/M
3300026222	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 (SPAdes)	Environmental	Open in IMG/M
3300026274	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059 (SPAdes)	Environmental	Open in IMG/M
3300026276	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031240	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031884	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005	Environmental	Open in IMG/M
3300032061	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10	Environmental	Open in IMG/M
3300032133	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA	Host-Associated	Open in IMG/M
3300032560	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009	Environmental	Open in IMG/M
3300032561	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011	Environmental	Open in IMG/M
3300032562	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017	Environmental	Open in IMG/M
3300032722	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
YBBDRAFT_10661211	3300001372	Marine Estuarine	MASGLCVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTLGGPDMN
JGI20174J14864_10026751	3300001414	Arctic Peat Soil	MASGLCVPHQQAAHMAAPTEGQNIKNTLANGEPSTHGA
P5cmW16_10669082	3300001664	Permafrost	MASGLCVPHQQAAHMAAPTEDSIKNTLANGEPSTHGAKRT
JGIcombinedJ26739_1015292562	3300002245	Forest Soil	MASGRCVPHKQAAHMAAPTEGQNIKKTLANGEPSTHDPK
JGI24140J50213_100548731	3300003369	Arctic Peat Soil	MASGLCVPHKQAAHMAAPTEGQKIKKALAKGEPSTHGAKXTL
Ga0055445_102140441	3300004003	Natural And Restored Wetlands	ASGRRVPHQQVEHMAAPTDAQCFKKALANGEPSTHGASPTCAAR*
Ga0062384_1014827471	3300004082	Bog Forest Soil	MASGLCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKQSWPSSI*
Ga0070733_103837741	3300005541	Surface Soil	MASGQRVPHKQAAHMAAPTEGQIIKKALANGEPSTHGAKQTLVDVCF*
Ga0070672_1002568741	3300005543	Miscanthus Rhizosphere	VLLIGTVLAEGIMASGFCVPQQQAAHMAAPTEGQNIRKPLANGEPSTHDPKR
Ga0070761_111188542	3300005591	Soil	MASGLRVPHKQAEHMAAPTEAQSINKTLANGEPSTHGA*
Ga0070762_103135132	3300005602	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKRTLAE*
Ga0070763_100957581	3300005610	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKRTFKLRG*
Ga0075272_10683742	3300005900	Rice Paddy Soil	MASGLRVPHKQAAHMAAPTEGQSIKKALANGEPSTHGAKRTIKTDLE*
Ga0070766_108665262	3300005921	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKQTFRCRRRESR*
Ga0070766_110836432	3300005921	Soil	MASGLCVPHKQAAHMAAPTEGQNIKKTLANGEPST
Ga0066788_100213831	3300005944	Soil	MASGLRVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGA
Ga0066791_100171182	3300005949	Soil	MASGLCVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTLASGCACAQRSARAR
Ga0075014_1008544761	3300006174	Watersheds	MASGLYVPHKQAAHMAAPTEAQNIKNALANGEPSTHGA
Ga0075014_1010236042	3300006174	Watersheds	MASGLCVPHKQAAHMAAPTEAQNIKNALANGEPSTHGAKRT
Ga0070765_1007699832	3300006176	Soil	MASGQCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKR
Ga0070765_1016200882	3300006176	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKR
Ga0075522_101059462	3300006638	Arctic Peat Soil	MASGLCVPHKQAAHMAAPTEGQNIKKALANGEPSTHGAKRTLGGSGSNVRL*
Ga0075522_103085682	3300006638	Arctic Peat Soil	MASGLRVPHKQAAHMAAPTEGQNIKKALANGEPSTHGAKRTLG*
Ga0066709_1041425482	3300009137	Grasslands Soil	MASGLCVPHKQAAHMAAPTEGQNIKKTLAKGEPSTHGAKRSLD*
Ga0073936_100533864	3300009175	Freshwater Lake Hypolimnion	MASGLRVPQKQAAHMAAPTEGQNIKKALAKGEPSTHGAK
Ga0073936_101266445	3300009175	Freshwater Lake Hypolimnion	IMASGLRVPQKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTLDR*
Ga0116125_10623863	3300009628	Peatland	MASGQCVPHQQAAHMAAPTEGQNIKKILANGEPSTHGAKRTWAE*
Ga0116117_10147623	3300009635	Peatland	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKRTLGDRGE*
Ga0105857_10629172	3300009650	Permafrost Soil	MASGLCVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTLADFSELD*
Ga0105859_10086474	3300009651	Permafrost Soil	MASGLCVPHQQAAHMAAPTEGQNINKTLANGEPSTHGA*
Ga0105856_10390021	3300009662	Permafrost Soil	LCVPHKQAAHMAAPTEGQNINKTLANGEPSTHGA*
Ga0074044_101503822	3300010343	Bog Forest Soil	MASGQCVPHQQAAHMAAPTEGQNIKKNLANGEPSTHGAKRTLADRDE*
Ga0134126_1000022161	3300010396	Terrestrial Soil	MASGSRVPHQQAAHMAAPTEKAEQQKSLAKVEPSTHGGFC*
Ga0120174_10451342	3300012008	Permafrost	MASGLCVPHKQAAHMAAPTEGQNIKKALANGEPSTHGAKQTIRLTGAE*
Ga0159060_10382702	3300012990	Hydrocarbon Resource Environments	MASGLCVPHKQAAHMAAPTEGQNIRKALANGEPSTHGA
Ga0159060_10469502	3300012990	Hydrocarbon Resource Environments	MASGPCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGA
Ga0181534_103714962	3300014168	Bog	MASGQCVPHQQAAHMAAPTEGQNIKKNLANGEPSTHGAKRTLAE*
Ga0182015_100532232	3300014495	Palsa	MASGLCVPHQQAAHMAAPTEGLNIKKALATGEPSTHDPKRGATA*
Ga0182024_1001194216	3300014501	Permafrost	EGIMASGLCVPHKQAAHMAAPTEGQSIKNTLANGEPSTHGA*
Ga0182024_100947763	3300014501	Permafrost	CVPHQQAAHMAAPTEGQNIKKTLANGEPSTHGAKRTFAGLR*
Ga0182024_101814553	3300014501	Permafrost	MASGLCVPHQQAAHMAAPTEGQNIKKAVAKGEPSTHGAERTLG*
Ga0182024_103367964	3300014501	Permafrost	MASGLCVPHQQAAHMAAPTEGQNIKKTLANGELSTHGAKRPGRKTGSILM*
Ga0182024_105257732	3300014501	Permafrost	MASGRCVPHKQAAHMAAPTEGHNIKKTLANGEPSTHDPKRTFPAALMSQT*
Ga0182024_107543521	3300014501	Permafrost	GIMASGLCVPHQQAAHMAAPTEGQNIKKTLANGEPSTHGAKRTFAIRCGTAGPL*
Ga0181522_102898381	3300014657	Bog	MASGQCVPHQQAAHMAAPTEGQNIKKNLANGEPSTHGAKRTLSE*
Ga0167661_10586601	3300015167	Glacier Forefield Soil	MASGLRVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRT
Ga0167651_10327402	3300015190	Glacier Forefield Soil	MASGLCEPHKQAAHMAAPTEGQNIKKALAKGEPSTHGA
Ga0167666_10285552	3300015194	Glacier Forefield Soil	MASGLRVPHKQAAHMAAPTEGQNINKTLAKGEPSTHGAKRTWG
Ga0167658_11153261	3300015195	Glacier Forefield Soil	MASGLCEPHKQAAHMAAPTEGQNINKTLAKGEPSTHGAKQTLG*
Ga0187863_100991971	3300018034	Peatland	MASGQCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKRTL
Ga0187863_101299241	3300018034	Peatland	AEGIMASGLCVPHKQAAHMAAPTEGQNIKKVLANGEPSTHGA
Ga0187883_100902261	3300018037	Peatland	MASGQCVPHQQAAHMAAPTEGQNIKKNLANGEPSTHGAKRTLSESRLPTPAA
Ga0187855_101439852	3300018038	Peatland	MASGQCVPHQQAAHMAAPTEGQNIKKILANGEPSTHGAKRTWAE
Ga0187887_106398032	3300018043	Peatland	MASGQCVPHQQAAHMAAPTEGQNIKKNLANGEPSTHGAKRTLAE
Ga0187859_102966201	3300018047	Peatland	MASGQCVPHQQAAHMAAPTEGQNIKKILANGEPSTHGAKRT
Ga0193752_10920273	3300020027	Soil	MASGHCVPHQQAAHMAAPTRRKHRIKETLAKGEPSTHDPT
Ga0210401_103297302	3300020583	Soil	MASGLCVPHKQAAHMAAPTEGQSIKNTLANGEPSTHGAKMG
Ga0210389_114858512	3300021404	Soil	MASGLCVPHKQAEHMAAPTEGQSIKNTLANGEPSTHGAKRTLGASGANDRF
Ga0210383_100750722	3300021407	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKALARGEPSTHDPKRTFELAGVRPFFCIL
Ga0210391_102303601	3300021433	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTHGAKRTFVQ
Ga0210392_101140742	3300021475	Soil	MASGLCVPHQQAAHMAAPTEGQNIKNALANGEPSTHGAKQTLAK
Ga0210392_102067951	3300021475	Soil	MASGLCVPHKQAEHMAAPTEGQSIKNTLANGEPSTHGAKRPSAG
Ga0210392_108151541	3300021475	Soil	PTESRPHMAAPTEGQSIKNTLANGEPSTHGAKQTLGW
Ga0210410_109982431	3300021479	Soil	MASGLCVPHQQAAHMTAPTEGQNIKKNLANGEPSTHGAKRTLGRA
Ga0193742_10801841	3300021976	Soil	MASGLCVPHKQAAHMAAPTEGQNIKNTLANGEPSTH
Ga0212088_100224921	3300022555	Freshwater Lake Hypolimnion	AEGIMASGLRVPQKQAAHMAAPTEGQNIKKALAKGEPSTHGVKRTFT
Ga0212088_100320436	3300022555	Freshwater Lake Hypolimnion	MASGLRVPQKQAAHMAAPTEGQNIKKALAKGEPSTHGAKQTLGSAG
Ga0209257_11183291	3300025304	Arabidopsis Root	MASGPCVPHQQAAHMAAPTRLKHRIKKTLAKGEPSTHDPKRAL
Ga0208035_10533432	3300025406	Peatland	GIMASGLCVPHQQAAHMAAPTEGQNIKKNLANGEPSTHGAKRTSAE
Ga0208850_10605461	3300025457	Arctic Peat Soil	MASGLCVPHQQAAHMATPTEGQNIKNTLANGEPSTHGAKRTLGWSGANDRF
Ga0208715_10160902	3300025482	Arctic Peat Soil	MASGLCVPHQQAAHMAAPTEGQNIKNTLANGEPSTHGAKQTLG
Ga0207928_10182381	3300025494	Arctic Peat Soil	MASGLCVPHQQAAHMAAPTEGQNIKNTLANGEPSTHGAK
Ga0208356_10508242	3300025504	Arctic Peat Soil	MASGLCVPHKQAAHMAAPTEGQNIKKTVANGEPSTHGAKRTLS
Ga0208848_10109194	3300025509	Arctic Peat Soil	MASGLCVPHQQAAHMAAPTEGQNIKNTLANGEPSTHGAKQPFGGPG
Ga0208078_10236961	3300025544	Arctic Peat Soil	MASGLRVPHKQAAHMAAPTEGQNIKNALANGEPSTHGAKRTLGRP
Ga0208220_10389962	3300025627	Arctic Peat Soil	MASGYCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKQT
Ga0208589_10311531	3300025634	Arctic Peat Soil	MASGLCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKQT
Ga0209584_100577192	3300025878	Arctic Peat Soil	MASGLCVPHKQAAHMAAPTEGQKIKKALAKGEPSTHGAKQTLPLLQAP
Ga0207644_101950401	3300025931	Switchgrass Rhizosphere	MASGFCVPQQQAAHMAAPTEGQNIRKPLANGEPSTHGAKRTMT
Ga0207691_103979062	3300025940	Miscanthus Rhizosphere	MASGFCVPQQQAAHMAAPTEGQNIKNTLANGEPSTHGAKRT
Ga0209903_10132321	3300026216	Soil	MASGLCVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTLAD
Ga0209855_10620892	3300026220	Permafrost Soil	MASGLCVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTFADAQY
Ga0209862_10442322	3300026222	Permafrost Soil	MASGLCVPHQQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTLADFSELD
Ga0209888_10802331	3300026274	Permafrost Soil	MASGLCVPHQQAAHMAAPTEGQNIKKTLANGEPSTHGAKPTFTPNS
Ga0209847_10277651	3300026276	Permafrost Soil	MASGLCVPHKQAAHMAAPTEGQNIKNTLANESRPHM
Ga0209863_101720611	3300026281	Prmafrost Soil	MASGLRVPHKQAAHMAAPTEGQNIKKALANGEPSTHGAQQPLGRPGLNGRS
Ga0208986_10355001	3300027031	Forest Soil	MASGPCVPHQQAAHMAAPTRRKHRMKETLAKGEPSTHDP
Ga0209115_10257862	3300027567	Forest Soil	MASGLRVPHKQAEHMAAPTEGQNIKKTLANGEPSTHGAKRTLG
Ga0209530_12080311	3300027692	Forest Soil	MASGLCVPHQQAAHMAAPTEGQNIKKDLANGEPSTH
Ga0209910_100330092	3300027803	Thawing Permafrost	MASGLCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGA
Ga0268266_103136252	3300028379	Switchgrass Rhizosphere	MASGFCVPQQQAAHMAAPTEGQNIRKPLANGEPST
Ga0265318_100138091	3300028577	Rhizosphere	MASGHRVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTLG
Ga0302266_100676942	3300028779	Bog	MASGLCVPHKQAAHMAATTEGQNIKKALAKGEPSTHGATRTFPTIRLKAS
Ga0302200_103336232	3300028909	Bog	MASGLCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTLD
Ga0247271_1040291	3300029903	Soil	MASGLCVPHQQAAHMAAPTEGQNIKKALANGEPST
Ga0311363_101745693	3300029922	Fen	MASGHRVPHQQAAHMAAPTEGQNINKTLANGEPST
Ga0311363_102140191	3300029922	Fen	VPHKQAAHMAATTEGQNIKKALAKGEPSTHGATRTLG
Ga0302274_100699402	3300030041	Bog	MASGLCVPHKQAAHMAATTEGQNIKKALAKGEPSTHGAKQPLR
Ga0302282_12622712	3300030045	Fen	MASGLCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKQPLR
Ga0075404_113629042	3300030842	Soil	MASGLCVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTSTVLVIQSSTRR
Ga0170823_133453281	3300031128	Forest Soil	SVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTLAG
Ga0170824_1046067144	3300031231	Forest Soil	ASGLSVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTWLNDRF
Ga0170824_1057667532	3300031231	Forest Soil	VPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRT
Ga0170824_1255299132	3300031231	Forest Soil	GLSVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRSSGGLAVNVSF
Ga0265320_100907931	3300031240	Rhizosphere	MASGHRVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTCQLLQV
Ga0265331_100367302	3300031250	Rhizosphere	MASGHRVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTLRP
Ga0170820_120978942	3300031446	Forest Soil	MASGLSVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRTWLNDRF
Ga0170818_1110566841	3300031474	Forest Soil	MASGLSVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKRT
Ga0302326_127137902	3300031525	Palsa	MASGQCVPHQQAAHMAAPTEGQNIKKILANGEPSTHGAKRTLAE
Ga0265313_100770601	3300031595	Rhizosphere	MASGHRVPHKQAAHMAAPTEGQNIKKALAKGEPSTHGAKRTLGRSGLNGRF
Ga0307508_106459021	3300031616	Ectomycorrhiza	MASGPFVPHKQAAHMAAPTEGQNIKKALANGEPSTHGAKRTLG
Ga0307476_109684601	3300031715	Hardwood Forest Soil	MASGLCVPRKQAAHMAAPTEGQNIKNTLANGEPSTHGAKQTLG
Ga0307474_105161131	3300031718	Hardwood Forest Soil	GIMASGLCVPRKQAAHMAAPTEGQNIKNTLANGEPSTHGAKQTLG
Ga0307474_112018961	3300031718	Hardwood Forest Soil	MASGLCVPHQQAAHMAAPTEGQNIKNALANGEPSTHGAKRTLSKPGRNGRF
Ga0307478_102528502	3300031823	Hardwood Forest Soil	MASGPCVPHQQAEHMAAPTEGQNIKKTLANGEPSTHDPKRTFAV
Ga0316220_12174511	3300031884	Freshwater	MASGLCVPHQQAAHMAAPTEGQNIKKTLANGEPSTHGAKRALRRRH
Ga0315540_100941431	3300032061	Salt Marsh Sediment	MASGSCAPHQQVEHMAAPTDAQCIKKTLANGEPSTHGAQRRFA
Ga0316583_100558842	3300032133	Rhizosphere	MASGPCAPHQQVEHMAAPTDVQCIKKTLASGEPSTHGASRHFAAAKN
Ga0316223_11204032	3300032560	Freshwater	MASGLCVPHQQAAHMAAPTEGQNIKKTLANGEPSTHGARRMAR
Ga0316222_13195322	3300032561	Freshwater	MASGLFVPHQQAAHMAAPTEGQNIKKTLANGEPSTHVPHQ
Ga0316226_11481031	3300032562	Freshwater	MASGLCVPHQQAAHMAAPTEGQNIKKDLAKGEPSTHGAKQSFD
Ga0316231_13940942	3300032722	Freshwater	MASGLCVPHQQAAHMAAPTEGQNIKKTLANGEPSTHGAKRTFVSGQS
Ga0335083_112116591	3300032954	Soil	IMASGLCVPHQQAAHMAAPTRRKHPSKKTLAKGEPSTHGA
Ga0310811_100029762	3300033475	Soil	MTSGLGVPHKQAAHMAAPTEGQNIKNTLANGEPSTHGAKQTWKASAARRGRQAGDE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069485

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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