Metagenome / Metatranscriptome Family F069566

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069566
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	63 residues
Representative Sequence	MDAKPQHNAAPKVINGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRV
Number of Associated Samples	74
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.43 %
% of genes near scaffold ends (potentially truncated)	97.56 %
% of genes from short scaffolds (< 2000 bps)	90.24 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.220 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.146 % of family members)
Environment Ontology (ENVO)	Unclassified (65.854 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.041 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.61% β-sheet: 5.43% Coil/Unstructured: 61.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF05063	MT-A70	5.69
PF00144	Beta-lactamase	4.88
PF06186	DUF992	3.25
PF09250	Prim-Pol	2.44
PF03401	TctC	1.63
PF01979	Amidohydro_1	1.63
PF12471	GTP_CH_N	1.63
PF00009	GTP_EFTU	1.63
PF00216	Bac_DNA_binding	1.63
PF12973	Cupin_7	1.63
PF04392	ABC_sub_bind	0.81
PF06904	Extensin-like_C	0.81
PF14492	EFG_III	0.81
PF01546	Peptidase_M20	0.81
PF13545	HTH_Crp_2	0.81
PF02771	Acyl-CoA_dh_N	0.81
PF01609	DDE_Tnp_1	0.81
PF00392	GntR	0.81
PF02826	2-Hacid_dh_C	0.81
PF05656	DUF805	0.81
PF02195	ParBc	0.81
PF00589	Phage_integrase	0.81
PF02872	5_nucleotid_C	0.81
PF13467	RHH_4	0.81
PF00202	Aminotran_3	0.81
PF00176	SNF2-rel_dom	0.81
PF01425	Amidase	0.81
PF03734	YkuD	0.81
PF00561	Abhydrolase_1	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	11.38
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	4.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	4.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	4.88
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.63
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.63
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.81
COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	Defense mechanisms [V]	0.81
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.81
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.81
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.81
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.81
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.81
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.81
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.81
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.81
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.81
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
All Organisms	root	All Organisms	48.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
cellular organisms	root	All Organisms → cellular organisms	48.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.84 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.07 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.07 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.07 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.63 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.07 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.63 %
Bacteroidaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.07 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.63 %
Phocaeicola	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.07 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.63 %
Phocaeicola dorei	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1080253	Not Available	573	Open in IMG/M
3300000956\|JGI10216J12902_102440143	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300003911\|JGI25405J52794_10107928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300004268\|Ga0066398_10168147	Not Available	561	Open in IMG/M
3300004629\|Ga0008092_11322944	Not Available	533	Open in IMG/M
3300004633\|Ga0066395_10050380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1840	Open in IMG/M
3300005332\|Ga0066388_102208436	Not Available	993	Open in IMG/M
3300005332\|Ga0066388_102535652	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300005332\|Ga0066388_103008374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300005332\|Ga0066388_104545385	Not Available	706	Open in IMG/M
3300005332\|Ga0066388_104611881	Not Available	701	Open in IMG/M
3300005332\|Ga0066388_107342065	Not Available	553	Open in IMG/M
3300005332\|Ga0066388_108034470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	527	Open in IMG/M
3300005347\|Ga0070668_102029666	Not Available	530	Open in IMG/M
3300005764\|Ga0066903_102478037	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300005764\|Ga0066903_105093889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300005764\|Ga0066903_109006860	Not Available	505	Open in IMG/M
3300009792\|Ga0126374_10965157	Not Available	666	Open in IMG/M
3300009792\|Ga0126374_11028214	Not Available	648	Open in IMG/M
3300010046\|Ga0126384_11619871	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300010046\|Ga0126384_11908960	Not Available	566	Open in IMG/M
3300010047\|Ga0126382_11231003	Not Available	672	Open in IMG/M
3300010048\|Ga0126373_13035440	Not Available	523	Open in IMG/M
3300010358\|Ga0126370_10758573	Not Available	860	Open in IMG/M
3300010360\|Ga0126372_10572295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1078	Open in IMG/M
3300010361\|Ga0126378_11455649	Not Available	776	Open in IMG/M
3300010362\|Ga0126377_11375714	Not Available	778	Open in IMG/M
3300010366\|Ga0126379_10134071	All Organisms → cellular organisms → Bacteria → Proteobacteria	2276	Open in IMG/M
3300010366\|Ga0126379_12309803	Not Available	638	Open in IMG/M
3300010366\|Ga0126379_12687000	Not Available	595	Open in IMG/M
3300010376\|Ga0126381_103373932	Not Available	629	Open in IMG/M
3300010398\|Ga0126383_11464085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300010398\|Ga0126383_12600556	Not Available	590	Open in IMG/M
3300010398\|Ga0126383_13172415	Not Available	537	Open in IMG/M
3300012971\|Ga0126369_10017371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5702	Open in IMG/M
3300012971\|Ga0126369_11829351	Not Available	696	Open in IMG/M
3300013308\|Ga0157375_13737307	Not Available	506	Open in IMG/M
3300016270\|Ga0182036_10637954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300016270\|Ga0182036_11258594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300016294\|Ga0182041_10169295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1708	Open in IMG/M
3300016294\|Ga0182041_10403496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300016319\|Ga0182033_10042398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3015	Open in IMG/M
3300016319\|Ga0182033_10222998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1515	Open in IMG/M
3300016319\|Ga0182033_10265145	Not Available	1402	Open in IMG/M
3300016319\|Ga0182033_10976489	Not Available	753	Open in IMG/M
3300016341\|Ga0182035_10293852	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300016341\|Ga0182035_10345855	Not Available	1234	Open in IMG/M
3300016341\|Ga0182035_10630042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	929	Open in IMG/M
3300016341\|Ga0182035_11104434	Not Available	706	Open in IMG/M
3300016357\|Ga0182032_10130380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1829	Open in IMG/M
3300016357\|Ga0182032_11154053	Not Available	666	Open in IMG/M
3300016357\|Ga0182032_11999087	Not Available	508	Open in IMG/M
3300016371\|Ga0182034_11339588	Not Available	625	Open in IMG/M
3300016387\|Ga0182040_11134644	Not Available	656	Open in IMG/M
3300016404\|Ga0182037_10200459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1548	Open in IMG/M
3300016404\|Ga0182037_10217155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1494	Open in IMG/M
3300016404\|Ga0182037_10270690	Not Available	1353	Open in IMG/M
3300016404\|Ga0182037_10492651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1026	Open in IMG/M
3300016422\|Ga0182039_11970449	Not Available	537	Open in IMG/M
3300016445\|Ga0182038_10239906	Not Available	1451	Open in IMG/M
3300016445\|Ga0182038_10806734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300021560\|Ga0126371_10463338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1414	Open in IMG/M
3300021560\|Ga0126371_10836387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1066	Open in IMG/M
3300021560\|Ga0126371_11566421	Not Available	786	Open in IMG/M
3300022756\|Ga0222622_10602954	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300028819\|Ga0307296_10778278	Not Available	522	Open in IMG/M
3300031545\|Ga0318541_10030621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2663	Open in IMG/M
3300031546\|Ga0318538_10295699	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300031564\|Ga0318573_10117444	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300031680\|Ga0318574_10776490	Not Available	561	Open in IMG/M
3300031681\|Ga0318572_10743324	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300031719\|Ga0306917_10711353	Not Available	789	Open in IMG/M
3300031724\|Ga0318500_10052885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1730	Open in IMG/M
3300031736\|Ga0318501_10020975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2746	Open in IMG/M
3300031736\|Ga0318501_10168448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1134	Open in IMG/M
3300031744\|Ga0306918_10953166	Not Available	667	Open in IMG/M
3300031747\|Ga0318502_10019228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3278	Open in IMG/M
3300031770\|Ga0318521_10212491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1120	Open in IMG/M
3300031777\|Ga0318543_10049574	Not Available	1708	Open in IMG/M
3300031777\|Ga0318543_10162130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	985	Open in IMG/M
3300031781\|Ga0318547_10497817	Not Available	752	Open in IMG/M
3300031781\|Ga0318547_10962117	Not Available	533	Open in IMG/M
3300031782\|Ga0318552_10241648	Not Available	916	Open in IMG/M
3300031793\|Ga0318548_10197121	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300031795\|Ga0318557_10423054	Not Available	612	Open in IMG/M
3300031819\|Ga0318568_10395948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	860	Open in IMG/M
3300031819\|Ga0318568_10507249	Not Available	752	Open in IMG/M
3300031833\|Ga0310917_10727415	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300031833\|Ga0310917_11009117	Not Available	558	Open in IMG/M
3300031833\|Ga0310917_11019930	Not Available	554	Open in IMG/M
3300031860\|Ga0318495_10433422	Not Available	577	Open in IMG/M
3300031879\|Ga0306919_11467625	Not Available	514	Open in IMG/M
3300031890\|Ga0306925_10282821	Not Available	1786	Open in IMG/M
3300031890\|Ga0306925_10369445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1539	Open in IMG/M
3300031896\|Ga0318551_10217799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1060	Open in IMG/M
3300031897\|Ga0318520_10579678	Not Available	697	Open in IMG/M
3300031910\|Ga0306923_10324099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1758	Open in IMG/M
3300031912\|Ga0306921_10066575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4122	Open in IMG/M
3300031912\|Ga0306921_11353385	Not Available	785	Open in IMG/M
3300031941\|Ga0310912_10100069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2134	Open in IMG/M
3300031942\|Ga0310916_10207599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1641	Open in IMG/M
3300031946\|Ga0310910_10181755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1624	Open in IMG/M
3300031947\|Ga0310909_10498239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300031954\|Ga0306926_10003103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17112	Open in IMG/M
3300031959\|Ga0318530_10503863	Not Available	503	Open in IMG/M
3300032001\|Ga0306922_10088190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3265	Open in IMG/M
3300032001\|Ga0306922_10249547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1907	Open in IMG/M
3300032001\|Ga0306922_10873793	Not Available	935	Open in IMG/M
3300032035\|Ga0310911_10257693	Not Available	999	Open in IMG/M
3300032044\|Ga0318558_10253486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	866	Open in IMG/M
3300032059\|Ga0318533_10470702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	920	Open in IMG/M
3300032059\|Ga0318533_11005373	Not Available	611	Open in IMG/M
3300032059\|Ga0318533_11228539	Not Available	548	Open in IMG/M
3300032059\|Ga0318533_11455470	Not Available	500	Open in IMG/M
3300032076\|Ga0306924_10000104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	57739	Open in IMG/M
3300032094\|Ga0318540_10161166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1076	Open in IMG/M
3300032261\|Ga0306920_100481141	All Organisms → cellular organisms → Bacteria → Proteobacteria	1843	Open in IMG/M
3300032261\|Ga0306920_100672843	Not Available	1527	Open in IMG/M
3300032261\|Ga0306920_101538496	Not Available	948	Open in IMG/M
3300032261\|Ga0306920_103984705	Not Available	536	Open in IMG/M
3300032261\|Ga0306920_104363510	Not Available	508	Open in IMG/M
3300033290\|Ga0318519_10023838	All Organisms → cellular organisms → Bacteria → Proteobacteria	2788	Open in IMG/M
3300033290\|Ga0318519_10199749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.56%
Host-Associated	Host-Associated	2.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.75%
Plants	Host-Associated → Plants	2.44%
Aquatic	Environmental → Aquatic	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.63%
Sediment	Environmental → Aquatic → Sediment	0.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.99%
Loam	Environmental → Terrestrial → Soil → Loam	9.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10802531	3300000655	Forest Soil	MHAKPNRDTVPQVINGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRR
JGI10216J12902_1024401433	3300000956	Soil	MHAKPNRDTAPQVINGRINGRFAPGCSGNPGGSPEATRRAFNKRFLLDLAED
JGI25405J52794_101079282	3300003911	Tabebuia Heterophylla Rhizosphere	MDEPEHKPAAKVLNGRINGRFAPGHSGCPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPAAYLKVC
Ga0066398_101681472	3300004268	Tropical Forest Soil	MKMNANAESNTARKLINGRINGKFAPGFSGNPGGSPEATRRAFNKRFLLDLAE
Ga0008092_113229441	3300004629	Tropical Rainforest Soil	MHAKPNRDTVPQVINGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFWR*
Ga0066395_100503803	3300004633	Tropical Forest Soil	MDAKLEHNAAPKVINGRVNGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVR
Ga0066388_1022084361	3300005332	Tropical Forest Soil	MNANTEPNTAPKVINGRINGKFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0066388_1025356521	3300005332	Tropical Forest Soil	MDAKPERNITPKVINGRINGRFAPGHSGNPGGSPEATRRAFNKRFLLDLAEDWEQHGREVFKR
Ga0066388_1030083743	3300005332	Tropical Forest Soil	MNANTEPNTAPKVINGRIDGKFAKGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPAAY
Ga0066388_1045453851	3300005332	Tropical Forest Soil	MNANTEPNTTPKVINGRINGRFAPGSSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVR
Ga0066388_1046118811	3300005332	Tropical Forest Soil	MKMNANAESNTARKLINGRINGKFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0066388_1073420651	3300005332	Tropical Forest Soil	MNSNTEPNTAPKVINGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0066388_1080344701	3300005332	Tropical Forest Soil	MDKLEHNTTPKVIKGRIKGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0070668_1020296662	3300005347	Switchgrass Rhizosphere	MDAKPDESAAPCVINGRINGRYAKGFSGNPGGSPEATRRAFNKDFLVALARDFQAHGEQVLARV
Ga0066903_1024780372	3300005764	Tropical Forest Soil	MDPKPDHNTAPKVINGRINGRFASGHSGNRGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPASY
Ga0066903_1050938891	3300005764	Tropical Forest Soil	MDAKPEHNAAPRVINGRVNGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHG
Ga0066903_1090068601	3300005764	Tropical Forest Soil	MTMNANAESKATPKAINGRIKGRFASGHSGNPGGSPEATRRAFNKRFLLDLAED
Ga0126374_109651572	3300009792	Tropical Forest Soil	MNASTEPNTAPKVNGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRR
Ga0126374_110282141	3300009792	Tropical Forest Soil	MDAKPEYNTARKIINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0126384_116198711	3300010046	Tropical Forest Soil	MSANTESKTAPKVINGRINGKFAPGYSGNPGGSPEATRRAFNKRCLLDLAEDWQQHGREVFKRVRRESPAAYLK
Ga0126384_119089602	3300010046	Tropical Forest Soil	MDAKPEHNAAPRVINGRISGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRR
Ga0126382_112310032	3300010047	Tropical Forest Soil	MNANTEPNTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0126373_130354401	3300010048	Tropical Forest Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRV
Ga0126370_107585732	3300010358	Tropical Forest Soil	MHAKPRDTVPQVINGRINGRFAPGFSGCPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRR
Ga0126372_105722952	3300010360	Tropical Forest Soil	MDAKLEHNAAPKVINGRVNGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREV
Ga0126378_114556492	3300010361	Tropical Forest Soil	MHAKPNRDTVPQVINGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREV
Ga0126377_113757141	3300010362	Tropical Forest Soil	MDTKHEHNTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0126379_101340711	3300010366	Tropical Forest Soil	MDAKLEHNAAPKVINGRVNGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKR
Ga0126379_123098032	3300010366	Tropical Forest Soil	MHAKPNRDTVPQVTNGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0126379_126870002	3300010366	Tropical Forest Soil	MDEPEHNIAPKVINGRIDGRFAKGFSGNPGGSPEATRIAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0126381_1033739321	3300010376	Tropical Forest Soil	MHAKPNRDTVPQVINGRINGRFAPGYSGSPGGSPEATRRAFNKRFLLDLAEDWQQH
Ga0126383_114640851	3300010398	Tropical Forest Soil	MNANTGPNTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRRGAIVFWEDPPHRS
Ga0126383_126005561	3300010398	Tropical Forest Soil	MHAKPNRDTVPQVINGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPASY
Ga0126383_131724151	3300010398	Tropical Forest Soil	MDAKPQHNAAPKVINGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRV
Ga0126369_100173716	3300012971	Tropical Forest Soil	MDAKLEHNAAPKVINGRVNGRFAPGFSGNPGGSPEAMRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0126369_118293511	3300012971	Tropical Forest Soil	MRAKPNPDTVPQVTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLTDLARDWEQHGPE
Ga0157375_137373071	3300013308	Miscanthus Rhizosphere	MDEPKHNTVPQVINGRINGRFAPGYSGNRGGSPEATRRAFNKDFLVALARDFQAHGEQVLARVRRE
Ga0182036_106379541	3300016270	Soil	MNANTEPNTAPKVINGRIDGKFAPGFSGNPGGSPEATRRAFNKRFLLDLAED
Ga0182036_112585942	3300016270	Soil	MDAKPEHNAAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQ
Ga0182041_101692953	3300016294	Soil	MRAKPYPDTVPQVINGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAE
Ga0182041_104034961	3300016294	Soil	MYVRTSSSENQAATMDAKPMHDTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREV
Ga0182033_100423981	3300016319	Soil	MDAKPEHSAATKVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0182033_102229981	3300016319	Soil	MDVKPEHNAAPKVIDGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRES
Ga0182033_102651452	3300016319	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0182033_109764891	3300016319	Soil	MEAKQDTAGKVINGRINGKFAPGYSGNAGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0182035_102938521	3300016341	Soil	MNANTEPNTAPKVINGRNHGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRV
Ga0182035_103458551	3300016341	Soil	MDAKQDTAGKVINGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGRE
Ga0182035_106300422	3300016341	Soil	MDAKPEHNAAPKVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0182035_111044341	3300016341	Soil	MDPKSEHNPAPKAINRHINGRFARGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGRE
Ga0182032_101303801	3300016357	Soil	MDAKPEHNAAPKVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKR
Ga0182032_111540531	3300016357	Soil	MNANTEPNTAPKVINGRNHGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVR
Ga0182032_119990871	3300016357	Soil	MDAKPEHNAAPRVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAED
Ga0182034_113395881	3300016371	Soil	MRAKPNPDTVPQVTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQH
Ga0182040_111346441	3300016387	Soil	MHAKPNPDTVPEVINGRIHGRFAPGHSGCPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKR
Ga0182037_102004591	3300016404	Soil	MNANTESKTAPKIIDGRINGRFAPGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKR
Ga0182037_102171553	3300016404	Soil	MTMNANAESKAASKVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0182037_102706901	3300016404	Soil	MDAKQDTAGKVINGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0182037_104926513	3300016404	Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0182039_119704492	3300016422	Soil	MTMNANAESNTARKVINGRIDGKFAKGYSGNPGGSPEATRRLVNKAFLEALAEDF
Ga0182038_102399061	3300016445	Soil	MDAKQDTAGKVINGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGR
Ga0182038_108067342	3300016445	Soil	MNANTESKTAPKVIDGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQH
Ga0126371_104633384	3300021560	Tropical Forest Soil	MHAKPNRDTVPQVTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQ
Ga0126371_108363871	3300021560	Tropical Forest Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVR
Ga0126371_115664211	3300021560	Tropical Forest Soil	MDAKLEHNAAPKVINGRVNGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0222622_106029541	3300022756	Groundwater Sediment	MDAKPDENAAPSVIDGRINGRFAKGFSGNPGGSPEATRRAFNKDYLVALARDFQAHGEQVLA
Ga0307296_107782781	3300028819	Soil	MDAKPDENAAPSVINGRINGRYAKGFSGNPGGSPEATRRAFNKDFLVALARDFQTHG
Ga0318541_100306213	3300031545	Soil	MEAKQDTAGKVINGRINGKFAPGYSGNAGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPAAY
Ga0318538_102956992	3300031546	Soil	MDANPEHKPASKVINGRINGRFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0318573_101174441	3300031564	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREV
Ga0318574_107764901	3300031680	Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0318572_107433242	3300031681	Soil	MTMNANAESKAASKVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0306917_107113531	3300031719	Soil	MNANTEPNTAPKVINGRNHGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQ
Ga0318500_100528853	3300031724	Soil	MNANTEPNTAPKVINGRIDGRFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0318501_100209751	3300031736	Soil	MRAKPNPDTVPQVTNGRINGRFAPGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVR
Ga0318501_101684484	3300031736	Soil	MRAKPNPDTVPQVTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGRE
Ga0306918_109531662	3300031744	Soil	MEAKQDTAGKVINGRINGKFAPGYSGNAGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPAAYLKV
Ga0318502_100192281	3300031747	Soil	MEAKHDTAGKVINGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0318521_102124913	3300031770	Soil	MDAKPEHNAAPKVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGRE
Ga0318543_100495742	3300031777	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0318543_101621301	3300031777	Soil	MEAKQDTAGKVINGRINGKFAPGYSGNAGGSPEATRRAFNQRFLLDLAEDWQQHGREVFKRV
Ga0318547_104978171	3300031781	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQ
Ga0318547_109621171	3300031781	Soil	MNANTEPNTAPKVINGRIDGKFAPGFSGNPGGSPEATRRAFNKRFLLDLAE
Ga0318552_102416482	3300031782	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAED
Ga0318548_101971211	3300031793	Soil	MDANPEHKPASKVINGRINGRFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQ
Ga0318557_104230541	3300031795	Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPATY
Ga0318568_103959481	3300031819	Soil	MDAKPEHNAAPKVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPAAYLK
Ga0318568_105072491	3300031819	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQDGREVFKR
Ga0310917_107274151	3300031833	Soil	MNPNLPDGLSEPGEDMNANTESKTAPRAINGRIRGRFAPGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVR
Ga0310917_110091171	3300031833	Soil	MNANAESKAAPKVINGRINGRFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRV
Ga0310917_110199301	3300031833	Soil	MNTNTESKTAPKVIDGRINGRFAPGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0318495_104334222	3300031860	Soil	MRAKPNPDTVPQVTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0306919_114676251	3300031879	Soil	MNANTEPNTAPKVINGRNHGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREV
Ga0306925_102828211	3300031890	Soil	MNTNTESKTAPKVIDGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRES
Ga0306925_103694451	3300031890	Soil	MRAKPNPDTVPQVTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKR
Ga0318551_102177992	3300031896	Soil	MNANTEPNTAPKVINGRIDGRFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQ
Ga0318520_105796781	3300031897	Soil	MTMNANAESKAASKVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPATYLK
Ga0306923_103240996	3300031910	Soil	MHAKPNPDTVPEVINGRIHGRFAPGHSGCPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRQSP
Ga0306921_100665754	3300031912	Soil	MNTNTESKTAPKVIDGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRR
Ga0306921_113533852	3300031912	Soil	MRAKPNPDTVPQVTNDRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREV
Ga0310912_101000693	3300031941	Soil	MDVKPEHNTAPKVINSRINGRFAKGFSGNPGGSPEATRRLVNKAFLEALAE
Ga0310916_102075991	3300031942	Soil	MDAKPEHNAAPKVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPAAYL
Ga0310910_101817553	3300031946	Soil	MRAKPNPDTVPQLTNGRINGRFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFK
Ga0310909_104982392	3300031947	Soil	MHAKPNRDTVPQVINGRINGRFAPGYSGNPGGSPEAARRSFNKDFLLALAADFKKHGRPRLKRCVSNSLRRT
Ga0306926_100031031	3300031954	Soil	MNANTEPNTAPKVINGRNHGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDW
Ga0318530_105038631	3300031959	Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHG
Ga0306922_100881901	3300032001	Soil	MDVKPEHNTAPKVINSRINGRFAKGFSGNPGGSPEATRRLVNKAFLEALAEDFRQGGAQAIAKV
Ga0306922_102495471	3300032001	Soil	MNANTESKTAPKIIDGRINGRFAPGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0306922_108737931	3300032001	Soil	MHAKPNRDTVPQVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDW
Ga0310911_102576933	3300032035	Soil	MTMNANAESKAASKVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0318558_102534862	3300032044	Soil	MDAKPEHNAAPRVINGRINGRFASGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQQGREVFK
Ga0318533_104707021	3300032059	Soil	MNTNTESKTAPKVIDGRINGRFAPGHSGNPGGSPEATRRAFNKRFLLDLAEDWQQ
Ga0318533_110053732	3300032059	Soil	MHAKPNRDTVPQVTNGRINGRFAPGFSGCPGGSPEATRRAFNKRFLLDLAEDWQQHGRE
Ga0318533_112285392	3300032059	Soil	MTMNANAESNTARKVINGRIDGKFAKGYSGNPGGSPEATRRLVNKAFLEALAEDFRQGGA
Ga0318533_114554701	3300032059	Soil	MNANTEPNTAPKVINGRIDGRFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESP
Ga0306924_100001041	3300032076	Soil	MNANTEPNTAPKVINGRNHGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHG
Ga0318540_101611662	3300032094	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQDGREVFK
Ga0306920_1004811413	3300032261	Soil	MSANTESKTAPKVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRESPA
Ga0306920_1006728431	3300032261	Soil	MDAKPEHNSAHEVINGRINGKFAKGFSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGRE
Ga0306920_1015384962	3300032261	Soil	MHAKPNRDTVPQVINGRINGRFAPGVSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREGFKRVRRESPAS
Ga0306920_1039847051	3300032261	Soil	MSANTESNTAPKVINGRINGRFVKGYSGNPGGSPEATRRLVNKAFLEALAEDFRQGGAQAIAKV
Ga0306920_1043635102	3300032261	Soil	MNTNTESKTAPKVIDGRINGKFAPGYSGNPGGSPEATRRAFNKRFLLDLAEDWQQHGREVFKRVRRE
Ga0318519_100238381	3300033290	Soil	MNANAESKAASKVINGRINGRFASGHSGNPGGSPEATRRACNKRFLLDLAEDW
Ga0318519_101997493	3300033290	Soil	MHAKPNRDTVPQVINGRINGRFAPGYSGNPGGSPEAARRSFNKDFLLALAADFKKHGRPRLKRC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069566

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences