Metagenome Family F069806

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069806
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	131 residues
Representative Sequence	VDVPVQFFQSTIAIELAVAGALLWEIRFFERGGAAQRDREQLPDARLQLLFALVLGATLFGSLWAIAEEGEALAATLVTTGVAISLLPVMIRVLPPLARDAHTSERDPDYAVTVVGLFVYAAVVGSVIALINID
Number of Associated Samples	68
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.13 %
% of genes near scaffold ends (potentially truncated)	42.28 %
% of genes from short scaffolds (< 2000 bps)	86.99 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.659 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (26.016 % of family members)
Environment Ontology (ENVO)	Unclassified (38.211 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.976 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 69.75% β-sheet: 0.00% Coil/Unstructured: 30.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF06803	DUF1232	6.50
PF00196	GerE	4.88
PF03706	LPG_synthase_TM	4.07
PF00730	HhH-GPD	1.63
PF00583	Acetyltransf_1	1.63
PF03860	DUF326	1.63
PF01594	AI-2E_transport	1.63
PF02518	HATPase_c	1.63
PF03734	YkuD	1.63
PF00561	Abhydrolase_1	1.63
PF13191	AAA_16	0.81
PF13368	Toprim_C_rpt	0.81
PF00582	Usp	0.81
PF06224	HTH_42	0.81
PF00497	SBP_bac_3	0.81
PF12680	SnoaL_2	0.81
PF00850	Hist_deacetyl	0.81
PF04261	Dyp_perox	0.81
PF00027	cNMP_binding	0.81
PF00486	Trans_reg_C	0.81
PF07992	Pyr_redox_2	0.81
PF03729	DUF308	0.81
PF00211	Guanylate_cyc	0.81
PF01323	DSBA	0.81
PF03176	MMPL	0.81
PF00005	ABC_tran	0.81
PF00528	BPD_transp_1	0.81
PF11234	Obsolete Pfam Family	0.81
PF05067	Mn_catalase	0.81
PF05808	Podoplanin	0.81
PF14310	Fn3-like	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	6.50
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	4.07
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	1.63
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.63
COG0177	Endonuclease III	Replication, recombination and repair [L]	1.63
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.63
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	1.63
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	1.63
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.63
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	1.63
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.63
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.81
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.81
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.81
COG2837	Periplasmic deferrochelatase/peroxidase EfeB	Inorganic ion transport and metabolism [P]	0.81
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.81
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.81
COG3546	Mn-containing catalase (includes spore coat protein CotJC)	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.66 %
Unclassified	root	N/A	46.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.66 %
Unclassified	root	N/A	46.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.66 %
Unclassified	root	N/A	46.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.59 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.89 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.44 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.63 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.38 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	2.44 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.63 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.81 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.81 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.81 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.38 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	2.44 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.81 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.81 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.38 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	2.44 %
unclassified Methylomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas	0.81 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.81 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.81 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.38 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	2.44 %
Methylomonas sp. LW13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LW13	0.81 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.81 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.81 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.34 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.38 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	2.44 %
Methylomonas sp. LW13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LW13	0.81 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.81 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.81 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1685110	Not Available	513	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100469127	Not Available	971	Open in IMG/M
3300000956\|JGI10216J12902_101374018	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300000956\|JGI10216J12902_107997095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1465	Open in IMG/M
3300000956\|JGI10216J12902_110428932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	692	Open in IMG/M
3300000956\|JGI10216J12902_112983543	Not Available	554	Open in IMG/M
3300000956\|JGI10216J12902_114475413	Not Available	579	Open in IMG/M
3300000956\|JGI10216J12902_119297007	Not Available	880	Open in IMG/M
3300000956\|JGI10216J12902_119544536	Not Available	566	Open in IMG/M
3300004114\|Ga0062593_100022493	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3376	Open in IMG/M
3300004114\|Ga0062593_100420388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1204	Open in IMG/M
3300004114\|Ga0062593_102925066	Not Available	546	Open in IMG/M
3300004156\|Ga0062589_101009370	Not Available	778	Open in IMG/M
3300004157\|Ga0062590_100046552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2368	Open in IMG/M
3300004157\|Ga0062590_102503274	Not Available	547	Open in IMG/M
3300004463\|Ga0063356_101359213	Not Available	1043	Open in IMG/M
3300004463\|Ga0063356_101946144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	888	Open in IMG/M
3300004463\|Ga0063356_102082282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	861	Open in IMG/M
3300004479\|Ga0062595_101084033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300004643\|Ga0062591_101939549	Not Available	605	Open in IMG/M
3300005093\|Ga0062594_100261033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1278	Open in IMG/M
3300005093\|Ga0062594_100739296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	896	Open in IMG/M
3300005093\|Ga0062594_101844749	Not Available	639	Open in IMG/M
3300005294\|Ga0065705_10051326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	989	Open in IMG/M
3300005294\|Ga0065705_10767737	Not Available	623	Open in IMG/M
3300005294\|Ga0065705_10829130	Not Available	600	Open in IMG/M
3300005329\|Ga0070683_101156501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300005330\|Ga0070690_100811230	Not Available	726	Open in IMG/M
3300005332\|Ga0066388_100475581	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300005332\|Ga0066388_101418557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1208	Open in IMG/M
3300005332\|Ga0066388_103300212	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300005332\|Ga0066388_104624205	Not Available	700	Open in IMG/M
3300005332\|Ga0066388_106836132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300005332\|Ga0066388_108793668	Not Available	501	Open in IMG/M
3300005347\|Ga0070668_100900120	Not Available	791	Open in IMG/M
3300005356\|Ga0070674_101814729	Not Available	553	Open in IMG/M
3300005440\|Ga0070705_101303730	Not Available	602	Open in IMG/M
3300005456\|Ga0070678_101868322	Not Available	567	Open in IMG/M
3300005471\|Ga0070698_100630830	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300005518\|Ga0070699_100039113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4107	Open in IMG/M
3300005518\|Ga0070699_100290594	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300005544\|Ga0070686_100724595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300005545\|Ga0070695_100784580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	762	Open in IMG/M
3300005577\|Ga0068857_101788593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LW13	601	Open in IMG/M
3300005614\|Ga0068856_100895210	Not Available	906	Open in IMG/M
3300005713\|Ga0066905_100006795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5028	Open in IMG/M
3300005713\|Ga0066905_100083119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2112	Open in IMG/M
3300005713\|Ga0066905_100653060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	897	Open in IMG/M
3300005713\|Ga0066905_102102500	Not Available	525	Open in IMG/M
3300005713\|Ga0066905_102133642	Not Available	522	Open in IMG/M
3300005713\|Ga0066905_102168038	Not Available	518	Open in IMG/M
3300005718\|Ga0068866_10257260	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300006038\|Ga0075365_11170998	Not Available	541	Open in IMG/M
3300006844\|Ga0075428_100413298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1446	Open in IMG/M
3300006844\|Ga0075428_101221844	Not Available	792	Open in IMG/M
3300006844\|Ga0075428_101404190	Not Available	733	Open in IMG/M
3300006847\|Ga0075431_101032449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	788	Open in IMG/M
3300006847\|Ga0075431_101212186	Not Available	717	Open in IMG/M
3300006852\|Ga0075433_10365269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1275	Open in IMG/M
3300006854\|Ga0075425_100258892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2001	Open in IMG/M
3300006854\|Ga0075425_101265431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	837	Open in IMG/M
3300006871\|Ga0075434_100166200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2226	Open in IMG/M
3300006871\|Ga0075434_101587695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300006871\|Ga0075434_101613486	Not Available	657	Open in IMG/M
3300006871\|Ga0075434_101993980	Not Available	586	Open in IMG/M
3300006904\|Ga0075424_100224748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1995	Open in IMG/M
3300006904\|Ga0075424_101854385	Not Available	637	Open in IMG/M
3300006914\|Ga0075436_101339919	Not Available	542	Open in IMG/M
3300009094\|Ga0111539_10027489	All Organisms → cellular organisms → Bacteria	6948	Open in IMG/M
3300009094\|Ga0111539_10696795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1182	Open in IMG/M
3300009094\|Ga0111539_11714057	Not Available	729	Open in IMG/M
3300009100\|Ga0075418_11490066	Not Available	734	Open in IMG/M
3300009100\|Ga0075418_12871232	Not Available	526	Open in IMG/M
3300009147\|Ga0114129_10095190	All Organisms → cellular organisms → Bacteria	4124	Open in IMG/M
3300009147\|Ga0114129_10501071	Not Available	1586	Open in IMG/M
3300009147\|Ga0114129_10627078	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300009147\|Ga0114129_11093667	Not Available	998	Open in IMG/M
3300009147\|Ga0114129_11635646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300009148\|Ga0105243_11038606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	824	Open in IMG/M
3300009156\|Ga0111538_10016526	All Organisms → cellular organisms → Bacteria	9690	Open in IMG/M
3300009156\|Ga0111538_10722993	Not Available	1261	Open in IMG/M
3300009162\|Ga0075423_10127008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2676	Open in IMG/M
3300009162\|Ga0075423_10703540	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300009162\|Ga0075423_12573345	Not Available	556	Open in IMG/M
3300009553\|Ga0105249_11465206	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300010043\|Ga0126380_11606234	Not Available	580	Open in IMG/M
3300010047\|Ga0126382_10324508	Not Available	1167	Open in IMG/M
3300010047\|Ga0126382_10900234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300010360\|Ga0126372_13322607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300010362\|Ga0126377_10147056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2210	Open in IMG/M
3300010362\|Ga0126377_13047483	Not Available	541	Open in IMG/M
3300010373\|Ga0134128_11411765	Not Available	767	Open in IMG/M
3300010375\|Ga0105239_10116085	All Organisms → cellular organisms → Bacteria	2970	Open in IMG/M
3300010375\|Ga0105239_11282065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	845	Open in IMG/M
3300010403\|Ga0134123_11353036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300012896\|Ga0157303_10242044	Not Available	545	Open in IMG/M
3300012961\|Ga0164302_11510475	Not Available	554	Open in IMG/M
3300012985\|Ga0164308_11149715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	698	Open in IMG/M
3300013306\|Ga0163162_10868051	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300014326\|Ga0157380_11916905	Not Available	653	Open in IMG/M
3300015371\|Ga0132258_11054354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2055	Open in IMG/M
3300015371\|Ga0132258_11080678	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300015371\|Ga0132258_11173958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1941	Open in IMG/M
3300015371\|Ga0132258_11833741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1528	Open in IMG/M
3300015372\|Ga0132256_100223469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1940	Open in IMG/M
3300015372\|Ga0132256_100345100	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1582	Open in IMG/M
3300015372\|Ga0132256_101525912	Not Available	779	Open in IMG/M
3300015372\|Ga0132256_101875218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300015373\|Ga0132257_101579733	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300015373\|Ga0132257_101992495	Not Available	749	Open in IMG/M
3300015374\|Ga0132255_102581005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	776	Open in IMG/M
3300018073\|Ga0184624_10521991	Not Available	515	Open in IMG/M
3300023077\|Ga0247802_1060639	Not Available	611	Open in IMG/M
3300025899\|Ga0207642_10216174	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300025927\|Ga0207687_11814531	Not Available	522	Open in IMG/M
3300025961\|Ga0207712_11126043	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	699	Open in IMG/M
3300026075\|Ga0207708_10081934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2480	Open in IMG/M
3300026116\|Ga0207674_11291594	Not Available	699	Open in IMG/M
3300027907\|Ga0207428_10341548	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300027907\|Ga0207428_10849341	Not Available	647	Open in IMG/M
3300031740\|Ga0307468_102100876	Not Available	544	Open in IMG/M
3300033550\|Ga0247829_11260612	Not Available	612	Open in IMG/M
3300034149\|Ga0364929_0159342	Not Available	734	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	51.22%
Environmental	Environmental	48.78%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	51.22%
Terrestrial	Environmental → Terrestrial	47.97%
Aquatic	Environmental → Aquatic	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.82%
Sediment	Environmental → Aquatic → Sediment	0.81%
Floodplain	Environmental → Terrestrial → Floodplain	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.08%
Loam	Environmental → Terrestrial → Soil → Loam	17.07%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	26.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.32%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.44%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_16851101	3300000033	Soil	MDVPVQFFQTTVAIELAVAGTLLWEIRFFERGNGARRDQEQLPDARLQLVFMLVLGTTLFGSLWAIAEGGGTLAATLVTTGVAVSLLPILIRVLPPLAKDARTSERXPXYAVSLVGLFVYVVVVGGXIALINID*
INPhiseqgaiiFebDRAFT_1004691271	3300000364	Soil	VDIPVQFFQSAITIELAVAGALLWQIRYFDRDAAQRDRQGLRDARLQLFFAFVLGATVFGSLWAIADQGNALAASLITTGVAVSLLPFLVHLLPPLARDARTSKRDADSALTFVGLSLYVLVVGSVIALINID*
JGI10216J12902_1013740182	3300000956	Soil	VDVPVQFFQSTITIELAVAGALLWEVRYFERNSATSQNAQRLYDPRLQLLFALILGATLFGSLWAIAEEGKALAATLVTTGVAISLLPVLIRVLPPLARDARTSERDPDYGVTVVGLLVYVLVVGGVIALINID*
JGI10216J12902_1079970952	3300000956	Soil	VELAQVAAAADVPVQFFQSTIAIELAVAGALLWQIRFFERGSAAARNREQLPHPRLQLSFALVLGGTLFGSLWAIADEGDALAATLVTTGVAVSVLPLLVRVLPTLARDARTSERDPDYAVTVVGLFVYTVVVGGVIALINID*
JGI10216J12902_1104289322	3300000956	Soil	MPVQFFQSTIAIELAVAGALLWEIRFFQRDGLSSRDRSRLPDPRLQLLFALVLGATLFGSLWAIADEGQALAATLVTTGVAVSLLPILIRVFPPLAKDLQTRERDPDYAVTVVGLFVYVVVVGGVIALINVD*
JGI10216J12902_1129835432	3300000956	Soil	AVDVPVQFFQSTIAIELAVAGASLWEIRYFERGSTAARNREQLPDARLQLFFALVLGATVFGSLWAIADEANALPATLVTTGVAISLLPVLTRVLPPLARDARTNERNPDSAVTVVGLFVYAVVVGGVIALINID*
JGI10216J12902_1144754131	3300000956	Soil	MDVPVQFFQTTVAIELAVAGTLLWEIRFFERGNGARREQEQLPDARLQLVFMLVLGTTLFGSLWAIAEGGGTLAATLVTTGVAVSLLPILIRVLPPLAKDARTSERDPDYAVSLVGLFVYVVVVGGFILLINID*
JGI10216J12902_1192970072	3300000956	Soil	VKEIPVQFFQSTIAIELAVAGALLWQIRFFERGGAAARDREQLPHPRLQLLFALVLGATLFGSLWAIAEEGKAFAATLVTTGVAVSLLPVLLRVLPPLARDARTSERDPDYAVTVVGLLAYVVVVGGVIALINID*
JGI10216J12902_1195445361	3300000956	Soil	QSTVAIELAVAGTLLWEIRFFERGSRTARDRKQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLAKDARTSERDPDYAVTLAGLSVYIVVVGGVIALINID*
Ga0062593_1000224931	3300004114	Soil	IAIELAVAGALLWEIRYFERGSEGERDRQELPHPRLQLFFALVLGATLFGSLWAIADEGTRLAATLVTIGVAVSLLPILIRVLPPLARDAHTSERDANYGVTVLGLFAYAAAVAGVIALINID*
Ga0062593_1004203883	3300004114	Soil	VEIPVQFFQSTIAIELAVAGALLWQLRYFERDRALRDRELPHPRLQLLFLLVLGATLFGSLWAIADEGKALAATLVTTGVAVSLLPIVIRVLPPLARDAHTTERDPDYAVTVVGLFVYVVVVGAIIALINID*
Ga0062593_1029250661	3300004114	Soil	RRYWFAVDVPVQFFQSTIAIELAVAGALLWEIRFFDRGDAARRDRKELPDARLQLLFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARDARTSERDADHRVAVVGLSSYVLVVGGVIALINID*
Ga0062589_1010093701	3300004156	Soil	VQFFQSTIAIELAVAGALLWEIRFFDRGDAARRDRKELPDARLQLLFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARDARTSEGDADYRVAVVGLSSYVLVVGGVIALINID*
Ga0062590_1000465524	3300004157	Soil	VDVPVQFFQTTIAIELAVAGALLWEIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMTRVLLPLARETRTSEHDSNYAVTVVGLCAYVLLVGGVIALISID*
Ga0062590_1025032741	3300004157	Soil	GRRYLGAVDIPVQFFQSTITIELAVAGALLWEIRYFERGRSAEQGGQQLPDPRLQLLFAVVIAATVFGSLWAIADRGDALAATFVTLGVAVSLVPILIRLLPPLVRDAHTGERHPHHSIAVGGLAVYVAVVAGVIALINID*
Ga0063356_1013592131	3300004463	Arabidopsis Thaliana Rhizosphere	VDVPLQLFQSTIAIELAVAGALLWEIRYFERESEAKGARQRLPNARRQLFFALVLGATVFGSLWAIADEGTTLAASLVTIGVAVSLLPILIRVLPPLARDARASERDADYAVTVLGLCAYAVVVAGVIALINVD*
Ga0063356_1019461442	3300004463	Arabidopsis Thaliana Rhizosphere	VKDIPVQFFQSTIAIELAVTGALLWQIRYFERDGAAGRDRAQLPHPRLQLFFALVLGATLFGSLWAIADEGKAFAATLVTTGVAVSLLPILIRGLPTLARDARTSERDPDYIVTVVGLVAYVVVVGSVIALINID*
Ga0063356_1020822821	3300004463	Arabidopsis Thaliana Rhizosphere	VQFFQSTIAIELAVAGALLWEIRYFERGSTTARNREQLPDARLQLFFALVLGATVFGSLWAIADEGSALAATLVTTGVAISLLPVLTRVLPPLARDARTNERNPDSAVTVVGLSVYAVVVGGVIALINID*
Ga0062595_1010840331	3300004479	Soil	IAIELAVAGALLWEIRYFERESEAKRDRQQLPDARLQLFFALVLGATLFGSLWALADAGTTLAATLVTIGVAISLLPIFLRVLPPLARDARTSERDANYAVTVLGLFAYAVVVAGVIALINID*
Ga0062591_1019395491	3300004643	Soil	RRRARLGRRYCSAVDVPVQFFKSTIAIELAVAGALLWEIRYFDREGAAERDRQELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARAARTSERNANYAVAVVGLFLYLLVVGGVIALINID*
Ga0062594_1002610331	3300005093	Soil	VDVPVQFFQSTIAIELAVAGALLWEIRYFERESTAGQERQLPDARLKLLFALVLGATVFGSLWAIAEEGDALAASLVTTGVAVSLLPILIRVLPPLARDIHTSKRDADYAVAVAGLCLYVLCVGAVIALINVD*
Ga0062594_1007392962	3300005093	Soil	IRYFERSGSETRDRQPLPDPRLQLLFALVIGATVFGSLWAIADNGEALAATFVTIGVAVSVLPILFRVLPPLVRDAQTSERHPDHAVTIGGLVAYIAFVAAIVALINID*
Ga0062594_1018447491	3300005093	Soil	VQFFQSAITIELAVAGALLWEIRYFDRERVGRGDRLELPHPRLQLLFALVLGATLFGSLWAIADEGNGLAATLVTIGVAISALPVLIRVLPPLARDARTSERDADYKVTVVGLFLYSVVVGGVIALINID*
Ga0065705_100513261	3300005294	Switchgrass Rhizosphere	LGRRYCSAVDVPVQFFKSTIAIELAVAGALLWEIRYFDREGAAERDRQELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARAARTSERNANYAVAVVGLFLYLLVVGGVIALINID*
Ga0065705_107677371	3300005294	Switchgrass Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERKSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLAKDARTSERDPDYAVSVVGLFVYVVVVGSVIALINID*
Ga0065705_108291301	3300005294	Switchgrass Rhizosphere	RDQRPGLDRLGGRYCSGVDVPVQFFQSTIAIELAVAGALLWEIRFFDREGAAGRDRQELPDARLQLLFALVLGATLFGSLWAIADEGKALAASLVMTGVAVSLLPFLVHVLPPLARDARTSERDANYAVAVVGLFLYVLVVGGVIALINID*
Ga0070683_1011565012	3300005329	Corn Rhizosphere	MDTVAAGVDLVGRGDTGQFFQSTIAIELAVAGALLWQLRYFERDRALRDRELPHPRLQLLFLLVLGATLFGSLWAIADEGKALAATLVTTGVAVSLLPIVIRVCHLSRETHRRTERDPDYAVTVVGLFVYVVVVGTIIALINID*
Ga0070690_1008112302	3300005330	Switchgrass Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFERGGAAQRDREQLPDARLQLLFALVLGATLFGSLWAIAEEGEALAATLVTTGVAISLLPVMIRVLPPLARDAHTSERDPDYAVTVVGLFVYAAVVGSVIALINID*
Ga0066388_1004755811	3300005332	Tropical Forest Soil	MPVQFFQSTIAIELAVAGALLWEIRYFERDSAAARERLPHPRLQLLFALVLGATLFGSLWAIADEGKSVAATLVTTGVAISLVPILLRVLPPLARDVRTSERDPDYAVTVIGLLAYVVVVGGVIALINID*
Ga0066388_1014185572	3300005332	Tropical Forest Soil	MPVQFFQSTIAIELAVAGALLWEIRYFERDSSAARNRLPHPRLQLLFALVLGATLFGSLWAIADEGEAVAATLVTTGVAISLVPILLRVLPPLARDVRTSERDPDYAVTLIGLLAYVVVVGGVIALINID*
Ga0066388_1033002121	3300005332	Tropical Forest Soil	AIELAVAGTLLWQIRFFERGGGAAPLPHPRLQLVFAVILGATVFGSLWAIADEGDSLAATLVTTGVAISLLPILIRVLPPLARDARTSERDPDYAVALAGLAAYAVVVVGVIALITID*
Ga0066388_1046242052	3300005332	Tropical Forest Soil	AQAMGGYSPAVDVPVQYFQSTIAIELAVSGALLWQIRFFEPATSARRDGEKLSDPRLRLLFGLVLGGTVFGSLWAIAEEGGRLAAAAVTTGVAISLIPILLRVLPPLAKDAATNERDPDYLVTLVGLFLYTLVVGGVLALINID*
Ga0066388_1068361321	3300005332	Tropical Forest Soil	LEIPVQFFQSTIAIELAVAGALLWEIRYFDRDRRKQELPDPRLQLFFALVIGATVFGSLWAIADEGKAFAATLVTTGVAVSLLPILIRGLPPLARDAQTRERQPDYAVTVLGLLVYVVLVGGIIALINID*
Ga0066388_1087936681	3300005332	Tropical Forest Soil	RSKGRQYWSAVDVPVQFFQSTITIELAVAGALLWEIRYFERRRGEERGREQLPDPRLQLFFALVIGTTLFASLWAIAEEGKALAASLITTGVAVSLLPILIRVLPPLARDARTNKRTPDYALAMGGLAAYDVVVAAVIALINID*
Ga0070668_1009001201	3300005347	Switchgrass Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEGGGTLAATLVTTGVAISLLPILIRVLPPLAKDARTSERDPDYAVSLVGLFVYVVVVGSVIALINID*
Ga0070674_1018147291	3300005356	Miscanthus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFERGGAAQRDREQLPDARLQLLFALVLAATLFGSLWAIAEEGEALAATLVTTGVAISLLPVMIRVLPPLARDAHTSERDPDYAVTVVGLFVYAAVVG
Ga0070705_1013037302	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLAKDARTSERDRDYAVSLVGLFVYVVLVGGVIAMINID*
Ga0070678_1018683221	3300005456	Miscanthus Rhizosphere	VQFFQTTIAIELAVAGALLWEIRFFERGTTAEQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMIRVLLPLARETRTSEHDSNYAVTVVGLCAYVLLVGGVIALISID*
Ga0070698_1006308302	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFDREGAAERDRQELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVMIGVAVSLLPFLVHVLPPLARDARTSERDANYAIAVVGLFLYVLVVGGVIALINID*
Ga0070699_1000391132	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDVPVQFFQSTITIELAVAGALLWEIRYFEPRGTARSGQPLPDPRLQLLFALVIGATVFGSLWAIADSGEALAATFVTIGVAVSLLPILFRVLPPLVRDAQTNERQPDRGVTIAGLVVYVAFVAAVVALINID*
Ga0070699_1002905942	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFDREGAAARDRQELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVMTGVAVSLLPFLVHVLPPLARDARTSERDANYAVAVVGLFLYVLVVGGVVVLINID*
Ga0070686_1007245951	3300005544	Switchgrass Rhizosphere	VDVPVQFFQSTIAIELAVAGTLLWEIRFFERGGAAQRDREQLPDARLQLLFALVLGATLFGSLWAIAEEGEALAATLVTTGVAISLLPVMIRVLPPLARDAHTSERDPDYAVTVVGLFVYAAVVGSVIALINID*
Ga0070695_1007845801	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IELAVAGTLLWEIRFFERGRGASRDREQLPDARLQLFFMLVLGATLFGSLWAIAEGGGTLAASLVTTGVAISLLPILIRVLPPLARDARTSERDRDYAVSLVGLFVYVVLVGGVIAMINID*
Ga0068857_1017885931	3300005577	Corn Rhizosphere	CPPRGHVRHGRVSPGRRYLGAVDIPVQFFQSTITIELAVAGALLWEVRYFERGRSAEQGGQQLADPRLQLLFAVVIAATVFGSLWAIADRGDALAATFVTLGVAVSLVPILIRLLPPLVRDAHTGERHPHHSIAVGGLAVYVAVVAGVIALINID*
Ga0068856_1008952102	3300005614	Corn Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERGSLAEQDRQPRPQLPDARLQLFFALVLGATLFGSLWAIADEGNALAATLVTTGVAISLLPILIRVLLPLAREAHTSEHDSNHAVT
Ga0066905_1000067959	3300005713	Tropical Forest Soil	VHEEIHPASLCVHTDAALDVPVQFFQSTIAIELAVAGALLWQIRFFEPRGTTRQDPEQLSDPRLRLIFAVVLGATLFGSLWAIAHEAGALTASAVTLGVASSLLPILIRVLPPLAKDASTSERAPGYGVTVVGLVVYVAIVGGVIALLNTD*
Ga0066905_1000831192	3300005713	Tropical Forest Soil	VDVPVQFFQSTIAIELAVAGALLWEIRFFEPRGKTGQDPEQLSDSRLRLIFAAILGATLFGSLWAIAHEAGSLTASAVTLGVAISLLPILIRVLPPLAKDAATSERDPGYSVAIVGLVVYVLIVVGVIALLNTD*
Ga0066905_1006530603	3300005713	Tropical Forest Soil	LWEIRFFEPRGTTEREAEQLPDARLRLFFAAVLGATLFGSLWAIAHEAGPLTASAVTLGVAVSLLPILIRVLPPLAKDAATSERPPGYGVTVLGLVVYVLIVGGVIALLNTD*
Ga0066905_1021025002	3300005713	Tropical Forest Soil	RGVNIPVQFFQSTIAIELAVAGALLWEIRYFERDRTSGQHGQLPNPRLQLLFVLVIAATVFGSLWAIADGGGVSAASLVTTGVAVSLLPVLLRVLPPLARDAHTSERDPQFAVAVLGLVVYAMAVGGVIALIAID*
Ga0066905_1021336421	3300005713	Tropical Forest Soil	IAIELAVAGALLWEVRFFESPGAAARDREELPDARLRLALALVLAGTVFGSLWGIAEGGGVLAASAVTVGVAVSLLPIIIRVLPPLARDAATQERDPSYSVTLVGLFLYVAAIAVVIALINID*
Ga0066905_1021680382	3300005713	Tropical Forest Soil	LDDIPVQFFQSTITIELAVAGALLWEMRFFERKDAVAREQLPDPRLQIFFGLLLGATVFGSLWAIADEGGSVAATLITTGIAISVLPILMRGLPSLARDAATRKRDPNHRVTVVGLFLYAVVVGGIVAVINID*
Ga0068866_102572601	3300005718	Miscanthus Rhizosphere	EIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMTRVLLPLARETRTSEHDSNYAVTVVGLCAYVLLVGGVIALISID*
Ga0075365_111709981	3300006038	Populus Endosphere	VDVPVQFFQSTIAIELAVAGALLWEIHYFERDSTTAQDRELPDPRLQLFFALVIGATMFGSLWAIADAGETLAASFVTIGVAVSLLPVMIRVLPPLARDARTSERRPDHAVAV
Ga0075428_1004132982	3300006844	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERESEAKRDRQQLPDARLQLFFALVLGATLFGSLWALADEGTTLAATLVTIGVAISLLPIFLRVLPPLARDARTSERDANYAVTVLGLFAYAVVVAGVIALINID*
Ga0075428_1012218442	3300006844	Populus Rhizosphere	LWEIRYFDRERVGRRDKQELPHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDADYKVTVVGLFLYTVVVGGVIALINID*
Ga0075428_1014041901	3300006844	Populus Rhizosphere	AVAGALLWEIRYFERGSTAARNREQLPDARLQLFFALVLGATVFGSLWAIADEGNALAATLVTTGVAISLLPVLTRVLPPLARDARTNERNPDYAVTVVGLFVYAVVVGGVIALINID*
Ga0075431_1010324491	3300006847	Populus Rhizosphere	VQFFQSAITIELAVAGALLWEIRYFDRERVGQRDRQELRHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDANYAVTVLGLFAYAVVVAGVI
Ga0075431_1012121862	3300006847	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIHYFERDSTTAQDRELPDPRLQLFFALVIGATMFGSLWAIADAGETLAASFVTIGVAVSLLPVMIRVLPPLARDARTSERDPDHAVAVGGLLAYVVVVVGVIALINVD*
Ga0075433_103652692	3300006852	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFDREGAAGRDRQELPDARLQLFFALVLGTTLFGSLWAIAEEGKALAASLVTTGVAVSLLPILIRVLPRLTRDARTSERDADYVVALVGLFSYVLVVGGVIALINID*
Ga0075425_1002588924	3300006854	Populus Rhizosphere	VPVQFFQSTIAIELAVAGALLWEIRYFDREGAAGRDRQELPDARLQLFFALVLGTTLFGSLWAIAEEGKALAASLVTTGVAVSLLPILIRVLPRLTRDARTSERDADYVVAVVGLFSYVLVVGGVIALINID*
Ga0075425_1012654312	3300006854	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIHYFERDSTTAQDRELPDPRLQLFFALVIGATMFGSLWAIADAGETLAASFVTIGVAVSLLPVMIRVLPPLARDARTSERDPDHAVAVGGLLAYVVVV
Ga0075434_1001662003	3300006871	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFDREGAAGRDRQELPDARLQLFFALVLGTTLFGSLWAIAEEGKALAASLVTTGVAVSLLPVLIRVLPRLTRDARTSERDADYVVAVVGLFSYVLVVGGVIALINID*
Ga0075434_1015876951	3300006871	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFDRGGPAARDREQLPDPRLQLLFALVLGATLFASLWAIAEEGKAVAATLVTTGVAISLLPVMLRVLPPLARDVHTSKRDPDYAVTVVGLFVYAGVVGSVIALINID*
Ga0075434_1016134861	3300006871	Populus Rhizosphere	STIAIELAVAGALLWEIHYFERDSTTAQDRELPDPRLQLFFALVIGATMFGSLWAIADAGETLAASFVTIGVAVSLLPVMIRVLPPLARDARTSERDPDHAVAVGGLLAYVVVVVGVIALINVD*
Ga0075434_1019939801	3300006871	Populus Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGGGAARDREHLPDARLQLLFMLVLGATLFGSLWAIAEGGGTLAATLVTTGVAISLLPILIRVLPPLAKDARTSERDPDYAVSLVGLFVYVVVVGGVIALINID*
Ga0075424_1002247481	3300006904	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFDREGAAGRDRQELPDARLQLFFALVLGTTLFGSLWAIAEEGKALAASLVTTGVAVSLLPILIRVLPRLTRDARTSERDADYVVAVVGLFSYVLVVGGVIALINID*
Ga0075424_1018543852	3300006904	Populus Rhizosphere	AGALLWEIRYFDRDRDEERARHELPDARLQLFFAVVIGATLFGSLWAIADEGGNLSATFVTTGVAVSLLPILIRGLPPLAREARTSERDPDYVVTVIGLVAYVVVVGGAVALINID*
Ga0075436_1013399191	3300006914	Populus Rhizosphere	WEIRYFDREGAAGRDRQELPDARLQLFFALVLGATLFGSLWAIAEEGKALAASLVTTGVAVSLLPVLIRVLPRLTRDARTSERDADYVVALVGLFSYVLVVGGVIALINID*
Ga0111539_100274893	3300009094	Populus Rhizosphere	VDVPVQFFQSAITIELAVAGALLWEIRYFDRERVGQRDRQELRHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDADYKVTVVGLFLYTVVVGGIIALINID*
Ga0111539_106967952	3300009094	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFDRGGAAGRDKEELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARDARTTERGANYPVAVVGLLLYVLVVGGVIALINID*
Ga0111539_117140571	3300009094	Populus Rhizosphere	LAVAGALLWEIRYFERNTATRDRQDLPHPRLQLFFALVMGATLFGSLWAIADEGNALAATLVTTGVAISVLPILLRVLPPLARDARTSERDPDNAVTIAGLFVYVVVVGGVIALINID*
Ga0075418_114900661	3300009100	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERGSTTARNREQLPDARLQLFFALVLGATVFGSLWAIADEGSALAATLVTTGVAISLLPVLTRVLPPLARDARTNERNPDYPVTVVGLSVYAVVVGGVIALINID*
Ga0075418_128712321	3300009100	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERESEAKRDRQQLPDARLQLFFALVLGATLFGSLWALADEGTTLAATLVTIGVAISLLPIFLRVLPPLAKDARTSERDANYAVT
Ga0114129_100951906	3300009147	Populus Rhizosphere	VDVPVQFFQSAITIELAVAGALLWEIRYFDRERVGQRDRQELRHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDADYKVTVVGLFLYTVVVGGVIALINID*
Ga0114129_105010712	3300009147	Populus Rhizosphere	VDVPVQFFQSTITIELAVAGALLWEIRYFEPRGTPRNGQPLPDPRLQLLFALVIGATVFGSLWAIADKGEALAATFVTIGVAVSLLPVLFRVLPPLVRDAQTSERSPDRAVTIGGLVVYVVFVAAVVALINID*
Ga0114129_106270782	3300009147	Populus Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFDRGRGAARDREHLPDARLQLLFVLVLGATLFGSLWAIADDGGTLAATLVTIGVAISLLPILIRVLPPLAKDARTSERDPDYAVSLVGLFVYVVVVGGVIALINID*
Ga0114129_110936671	3300009147	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFDRGGAAGRDKEELPDARLQLFFALVLGATLFGSLWAIAEEGKALAASLVTTGVAVSLLPVLIRVLPRLTRDARTSERDADYVVALVGLFSYVLVVGGVIALINID*
Ga0114129_116356461	3300009147	Populus Rhizosphere	LLWEIRYFDREKPEGRDRQELPDARLQLLFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARDARTSERGANYPVAVVGLLLYVLVVGGVIALINID*
Ga0105243_110386062	3300009148	Miscanthus Rhizosphere	ELAVAGTLLWEIRFFERGRAEARDREQLPDARLQLFFMLVLGATLFGSLWAIAEGGGTLAASLVTTGVAISLLPILIRVLPPLARDARTSERDRDYAVSLVGLFVYVVLVGGVIAMINID
Ga0111538_100165264	3300009156	Populus Rhizosphere	VDVPVQFFQSAITIELAVAGALLWEIRYFDRERVGQRDRQELPHPRLQLLFALVLGATLLGSLWAIAEEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDADYKVTVVGLFLYTVVVGGIIALINID*
Ga0111538_107229933	3300009156	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERESEAKRDRQQLPDARLQLFFALVLGATLFGSLWALADEGTTLAATLVTIGVAISLLPIFIRVLPPLARDAHTSKRDANYAVTVFGLFA
Ga0075423_101270081	3300009162	Populus Rhizosphere	AIELAVAGALLWEIHYFERDSTTAQDRELPDPRLQLFFALVIGATMFGSLWAIADAGETLAASFVTIGVAVSLLPVMIRVLPPLARDARTSERHPDHAVAVGGLLAYVVVVLGVIALINVD*
Ga0075423_107035401	3300009162	Populus Rhizosphere	IRYFERGSLAEQDRQPRPQLPDARLQLFFALVLGATLFGSLWAIADEGNALAATLVTTGVAISLLPILIRVLLPLAREAHTTEHDSNQAVTVVGLFVYAFVVGGVIAFINID*
Ga0075423_125733451	3300009162	Populus Rhizosphere	VKDIPVQFFQSTIAIELAVTGALLWQIRYFERDGAAGRDRAQLPHPRLQLFFALVLGATLFGSLWAIADEGKAFAATLITTGVAVSLLPILIRGLPTLARDARTSERDPDYIVTVVGLVA
Ga0105249_114652061	3300009553	Switchgrass Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGATRDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLARDARTSERDPDYAVSLVGLFVYLVVVGSVIALINID*
Ga0126380_116062342	3300010043	Tropical Forest Soil	VHTVAAVDVPVQFFQSTIAIELAVAGALLWEIRFLEPRGTTEREAEQLPDARLRLFFAAVLGATLFGSLWAIAHEAGSLTASAITLGVAISLLPILIRVLPPLAKDAATSERDPDYVITIIGLVLYVAVVAGFLVLLDFA*
Ga0126382_103245082	3300010047	Tropical Forest Soil	MDIPVQFFQSTIAIELAVAGALLWEVRFFESPGAAARDREELPDARLRLALALVLAGTMFGSLWGIAEGGGVLAASAVTVGVAVSLLPIIIRVLPPLARDAATQERDPSYSVTLVGLFLYVAAIAVVIALINID*
Ga0126382_109002342	3300010047	Tropical Forest Soil	DVPVQFFQSTIAIELAVAGALLWEIRFFEPRGKTGQDREQLSDPRLRLIFAAILGATLFGSLWAIAHEAGSLTASAVTLGVAISLLPILIRVLPPLAKDAATSERDPGYNVAIVGLVVYVLIVVGVIALLNTD*
Ga0126372_133226071	3300010360	Tropical Forest Soil	VELAVTGALLWEIRFFERGSARETEHLPDPRFQLFFVLVLGATLFGSLWAIAEEGGTLAATLVTTGVAISLLPILLRVLPPLAKDARTSERDPEYAVTLVGLSAYVVVVGGVIALINID*
Ga0126377_101470562	3300010362	Tropical Forest Soil	VDVPVQFFQSTIAIELAVAGALLWEIRFFEPRGKTGQDPEQLSDPWLRLIFAAILGATLFGSLWAIAHEAGSLTASAVTLGVAISLLLILIRVLPPLAKDAATSERYPGYGVTVVGLALYALIVGGVIALLNTD*
Ga0126377_130474831	3300010362	Tropical Forest Soil	VDVPVQFFQSTITIELAVAGALLWEIRYFERERGEERGREQLPDPRLQLFFALVIGTTLFASLWAIAEEGKALAASLITTGVAVSLLPIIVRVLPPLARDVRTNERAPGYAVTLVGLVAYVVVVGAAIALINID*
Ga0134128_114117652	3300010373	Terrestrial Soil	MDVPVQFFQTTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILVRVLPPLAKDARTSERDPDYAVSLVGLFVYLVVVGSVIALINID*
Ga0105239_101160851	3300010375	Corn Rhizosphere	VDVPVQFFQTTIAIELAVAGALLWEIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMIRVLLPLARETRTSEHDSNYAVTVVGLCAYVLVVGGVIALISID*
Ga0105239_112820652	3300010375	Corn Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLARDARTSERDRDYAVSLVGLFVYVVLVGGVIALINID*
Ga0134123_113530362	3300010403	Terrestrial Soil	VDVPVQFFQSAITIELAVAGALLWEIRYFDRERVGQRDRQELPHPRLQLLFALVLGATLFGSLWAIADEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDADYKVTVVGLFLY
Ga0157303_102420442	3300012896	Soil	VEIPVQFFQSTIAIELAVAGALLWQLRYFERDRALRDRELPHPRLQLLFLLVLGATLFGSLWAIADEGKALAATLVTTGVAVSLLPIVIRVLPPLARDAHTTERDPDYAVTVVGLFV
Ga0164302_115104751	3300012961	Soil	SAVDVPVQFFQSTIAIELAVTGALLWEIRYFERGSAARERQRLPDARLQLFFALVLGATVFGSLWAIADEGNALAATLITTGVAISLLPVLTRVLPPLAKDARTNERDPDCAVTVIGLFVYAVVVGGVIALINID*
Ga0164308_111497152	3300012985	Soil	ALLWEIRYFERGSAARERQRLPDARLQLFFALVLGATVFGSLWAIADEGNALAATLITTGVAISLLPVLTRVLPPLAKDARTNERDPDCAVTVIGLFVYAVVVGVVIALINID*
Ga0163162_108680512	3300013306	Switchgrass Rhizosphere	VDVPVQFFQTTIAIELAVAGALLWEIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMIRVLLPLARETRTSEHDSNYAVTVVGLCAYVLLVGGVIALISID*
Ga0157380_119169052	3300014326	Switchgrass Rhizosphere	VDVPVQFFQTTIAIELAVAGALLWEIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMTRVLLPLARETRTSEHDSNYAVTVVGLCAYVL
Ga0132258_110543542	3300015371	Arabidopsis Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERGGPAARDRRQLPDARLQLLFALVLGATVFGSLWAIADEGKALAATLVTIGVAISLLPIMIRVLPPLARDARTSERDPDHAVTVIGLFVYVAVVGSVIALINID*
Ga0132258_110806784	3300015371	Arabidopsis Rhizosphere	VDVPVQFFQSTITIELAVAGALLWEIRYFDRERAGRGERLELPHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLVRVLPPLARDARTSERDAHYKVTVVWLFLYCAVVGGVIALINID*
Ga0132258_111739582	3300015371	Arabidopsis Rhizosphere	VDVPVQFFQTTIAIELAVAGALLWEIRYFERGTAEGEAKKLPDARLQLFFALVLAATVFGSLWAIADQGEALAATLVTTGVAISLLPILIRVLPPLARDARTSEHNSNSAVTFVGLSVYALVVSSVIALINID*
Ga0132258_118337412	3300015371	Arabidopsis Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRYFERGGERDRQEIPDARLQLLFALVIGATVFGSLWAIADQGKALAATFVTIGVAVSLLPIVIRVLPPLVRDAHTNERHPDHAVTVGGLVVYVAFVAGVIALINID*
Ga0132256_1002234692	3300015372	Arabidopsis Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIHYFERESTTAQDRELPDPRLQLFFALVIGATVFGSLWAIADAGDALAASLVTLGVAVSLLPVMIRVLPPLARDARTSERHPDHAVAVSGLLAYVVVVLGVIALINVD*
Ga0132256_1003451002	3300015372	Arabidopsis Rhizosphere	VDVPVQFFQSTITIELAVAGALLWEIRYFDRERAGRGERLELPHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLVRVLPPLARDARTSERDAHYKVTVVGLFLYCAVVGGVIALINID*
Ga0132256_1015259122	3300015372	Arabidopsis Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLARDARTSERDPDYAVSLVGLFVYLVVVGSVIALINID*
Ga0132256_1018752182	3300015372	Arabidopsis Rhizosphere	VDVPVQFFQTTIAIELAVAGALLWEIRYFERGTAEGEAKKLPDARLQLFFALVLAATVFGSLWAIADEGEALAATLVTTGVAISLLPILIRVLPPLARDARTSEHNSNSAVTFVGLSVYALVVSSVIALINID*
Ga0132257_1015797332	3300015373	Arabidopsis Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIRFFEREGAAGRDRQELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVTIGVAVSLLPFLVYVLPPLARDARTSERDANYPVAVVGLLLYVLVV
Ga0132257_1019924951	3300015373	Arabidopsis Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERRSGAAQDREQLPDARLQLLFVLVLGATLFGSLWAIAKDGGTLGATLVTTGVAISLLPILIRVLPPLANDARTSERDPDYAVSLVGLFVYLVVVGSVIALINID*
Ga0132255_1025810051	3300015374	Arabidopsis Rhizosphere	MDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLGATLVTTGVAISLLPILIRVLPPLARDARTSERDPDYAVSLVGLFVYLVVVVGVIALINID*
Ga0184624_105219911	3300018073	Groundwater Sediment	IPEHWRRQGDQRPGRARLGRGYCSAVDVPVQFFQSTIAIELAVAGALLWEIRYFDREGAAGRDRQELPDARLQLLFALVLGATLFGSLWAIADEGKALAASRVMTGVAVSLLPFLFHVLPPLARDARTRERDPDYAITAVGLFVYVVFVGGVIGLINID
Ga0247802_10606392	3300023077	Soil	VDVPVQFFQTTIAIELAVAGALLWEIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMTRVLLPLARETRTSEHDSNYAVTVVGLCAYVLLVGGVIALISID
Ga0207642_102161741	3300025899	Miscanthus Rhizosphere	VQFFQTTIAIELAVAGALLWEIRFFERGKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNALAAALVTAGVAISLLPVMTRVLLPLARETRTSEHDSNYAVTVVGLCAYVLLVGGVIALISID
Ga0207687_118145311	3300025927	Miscanthus Rhizosphere	VEIPVQFFQSTIAIELAVAGALLWQLRYFERDRALRDRELPHPRLQLLFLLVLGATLFGSLWAIADEGKALAATLVTTGVAVSLLPIVIRVLPPLARDAHTTERDPDYAVTVVGLFVYVVVVGAIIALINID
Ga0207712_111260431	3300025961	Switchgrass Rhizosphere	AMDVPVQFFQSTVAIELAVAGTLLWEIRFFERGSGAARDREQLPDARLQLLFVLVLGATLFGSLWAIAEDGGTLAATLVTTGVAISLLPILIRVLPPLARDARTSERDPDYAVSLVGLFVYLVVVGSVIALINID
Ga0207708_100819341	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VDVPVQFFQTTIAIELAVAGALLWEIRFFERRKPAGQEMGHPPDARLQLFFALVLGATVFGSLWAIADEGNTLAAALVTTGVAISLLPVMIRVLLPLARETRTSEHDSNYAVTVVGLCAYVLVVGGVIALISID
Ga0207674_112915941	3300026116	Corn Rhizosphere	CPPRGHVRHGRVSPGRRYLGAVDIPVQFFQSTITIELAVAGALLWEVRYFERGRSAEQGGQQLADPRLQLLFAVVIAATVFGSLWAIADRGDALAATFVTLGVAVSLVPILIRLLPPLVRDAHTGERHPHHSIAVGGLAVYVAVVAGVIALINID
Ga0207428_103415482	3300027907	Populus Rhizosphere	VQFFQSAITIELAVAGALLWEIRYFDRERVGQRDRQELRHPRLQLLFALVLGATLLGSLWAIADEGNGLAATLVTIGVAVSALPVLIRVLPPLARDARTSERDADYKVTVVGLFLYTVVVGGIIALINID
Ga0207428_108493411	3300027907	Populus Rhizosphere	VDVPVQFFQSTIAIELAVAGALLWEIHYFERDSTTAQDRELPDPRLQLFFALVIGATMFGSLWAIADAGETLAASFVTIGVAVSLLPVMIRVLPPLARDARTSERDPDHAVAVGGLLAYVVVVVGVIALINVD
Ga0307468_1021008761	3300031740	Hardwood Forest Soil	VDVPVQFFQSTIAIELAVAGALLWEIRFFDREGAAARDRQDLPDARLQLFFALVLGATLFGSLWAIADEGDALAASLVMIGVAVSLLPFLMHVLPPLARDVRTSERDAHYVGAVVGLVLYVFVVGGVIALINID
Ga0247829_112606121	3300033550	Soil	VQFFQSTIAIELAVAGALLWEIRYFEREGEANQARQQRPDARLQLFFALVLGATLFGSLWALADEGTTLAATLVTIGVAISLLPIFIRVLPPLARDAHTSKRDANYAVTVLGLFAYVVVVASVIALINID
Ga0364929_0159342_315_734	3300034149	Sediment	RYSSDVAVPVQFFQSTIAIELAVAGALLWEIRFFDRGDASGRDRQELPDARLQLFFALVLGATLFGSLWAIADEGKALAASLVMTGVAVSLLPFLVHVLPPLARDARTSERDANYAVAVVGLFLYVLVVGGVIALINID

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069806

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences