Metagenome Family F069946

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069946
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	67 residues
Representative Sequence	GTQPGDTGRRLWHAGSNGRWNCGVFIAPEIDFAVLVACNRGIAAWKTRQTLKALIRTFAPKRTS
Number of Associated Samples	108
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	98.37 %
% of genes from short scaffolds (< 2000 bps)	91.06 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.618 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.008 % of family members)
Environment Ontology (ENVO)	Unclassified (34.959 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.650 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.70% β-sheet: 0.00% Coil/Unstructured: 66.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00106	adh_short	4.88
PF09752	ABHD18	4.07
PF04072	LCM	3.25
PF00144	Beta-lactamase	3.25
PF13561	adh_short_C2	2.44
PF06439	3keto-disac_hyd	2.44
PF03551	PadR	1.63
PF03466	LysR_substrate	1.63
PF12695	Abhydrolase_5	0.81
PF04002	RadC	0.81
PF00440	TetR_N	0.81
PF13646	HEAT_2	0.81
PF03781	FGE-sulfatase	0.81
PF00535	Glycos_transf_2	0.81
PF13570	PQQ_3	0.81
PF09346	SMI1_KNR4	0.81
PF02566	OsmC	0.81
PF04480	DUF559	0.81
PF10988	DUF2807	0.81
PF11231	DUF3034	0.81
PF13385	Laminin_G_3	0.81
PF00248	Aldo_ket_red	0.81
PF00664	ABC_membrane	0.81
PF08534	Redoxin	0.81
PF08757	CotH	0.81
PF07638	Sigma70_ECF	0.81
PF11867	DUF3387	0.81
PF02899	Phage_int_SAM_1	0.81
PF12710	HAD	0.81
PF00326	Peptidase_S9	0.81
PF00126	HTH_1	0.81
PF00702	Hydrolase	0.81
PF07586	HXXSHH	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	3.25
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.25
COG2367	Beta-lactamase class A	Defense mechanisms [V]	3.25
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.25
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.63
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.63
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.63
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.81
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.81
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.81
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.81
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.81
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.81
COG5337	Spore coat protein CotH	Cell wall/membrane/envelope biogenesis [M]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.43 %
Unclassified	root	N/A	10.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.43 %
Unclassified	root	N/A	10.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.62 %
Unclassified	root	N/A	10.57 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.81 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	73.17 %
Unclassified	root	N/A	10.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.07 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	69.92 %
Unclassified	root	N/A	10.57 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	51.22 %
Unclassified	root	N/A	10.57 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	8.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.63 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.22 %
Unclassified	root	N/A	10.57 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	8.94 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.63 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.22 %
Unclassified	root	N/A	10.57 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	7.32 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1.63 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.22 %
Unclassified	root	N/A	10.57 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	4.88 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	2.44 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	1.63 %
Haloferula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.22 %
Unclassified	root	N/A	10.57 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4.88 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	2.44 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.63 %
unclassified Haloferula	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → unclassified Haloferula	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.22 %
Unclassified	root	N/A	10.57 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	4.07 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	2.44 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.63 %
Haloferula sp. BvORR071	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → unclassified Haloferula → Haloferula sp. BvORR071	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1032256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	557	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1055673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300004082\|Ga0062384_101258610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	540	Open in IMG/M
3300004156\|Ga0062589_102810750	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300004479\|Ga0062595_100269121	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300005294\|Ga0065705_10776662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300005332\|Ga0066388_102946319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	870	Open in IMG/M
3300005338\|Ga0068868_100627339	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300005345\|Ga0070692_10171267	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1252	Open in IMG/M
3300005440\|Ga0070705_101006817	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005577\|Ga0068857_101282280	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006791\|Ga0066653_10513657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300006796\|Ga0066665_10242320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1422	Open in IMG/M
3300006796\|Ga0066665_11317131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300006845\|Ga0075421_102015824	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	614	Open in IMG/M
3300006846\|Ga0075430_101461988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300006852\|Ga0075433_11247959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300006853\|Ga0075420_101055888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300006853\|Ga0075420_101669888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300006854\|Ga0075425_102827631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	534	Open in IMG/M
3300006894\|Ga0079215_11733495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300006918\|Ga0079216_10999928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300007004\|Ga0079218_11796473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300007258\|Ga0099793_10416517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	662	Open in IMG/M
3300009094\|Ga0111539_13074495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300009137\|Ga0066709_103076956	Not Available	610	Open in IMG/M
3300009137\|Ga0066709_104162643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300009147\|Ga0114129_12227949	Not Available	659	Open in IMG/M
3300009147\|Ga0114129_13383196	Not Available	513	Open in IMG/M
3300009148\|Ga0105243_13137596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300009156\|Ga0111538_11597878	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300009156\|Ga0111538_13049616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300009519\|Ga0116108_1185727	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300009549\|Ga0116137_1188571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300009553\|Ga0105249_11325550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	791	Open in IMG/M
3300009609\|Ga0105347_1040158	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1656	Open in IMG/M
3300009609\|Ga0105347_1242322	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300009641\|Ga0116120_1016105	All Organisms → cellular organisms → Bacteria → Acidobacteria	2812	Open in IMG/M
3300009678\|Ga0105252_10340998	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300009700\|Ga0116217_10849787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	561	Open in IMG/M
3300010329\|Ga0134111_10244414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	735	Open in IMG/M
3300010359\|Ga0126376_11501822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	702	Open in IMG/M
3300010364\|Ga0134066_10016323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1586	Open in IMG/M
3300010366\|Ga0126379_13231981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	546	Open in IMG/M
3300010397\|Ga0134124_10391227	All Organisms → cellular organisms → Bacteria → PVC group	1320	Open in IMG/M
3300010399\|Ga0134127_10002628	All Organisms → cellular organisms → Bacteria	12916	Open in IMG/M
3300010403\|Ga0134123_12191227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	614	Open in IMG/M
3300011415\|Ga0137325_1077204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300011423\|Ga0137436_1023506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1533	Open in IMG/M
3300011430\|Ga0137423_1001176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → unclassified Haloferula → Haloferula sp. BvORR071	8094	Open in IMG/M
3300011440\|Ga0137433_1245277	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300011444\|Ga0137463_1348859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300012201\|Ga0137365_10236837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1360	Open in IMG/M
3300012206\|Ga0137380_10581527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	981	Open in IMG/M
3300012210\|Ga0137378_10305616	Not Available	1480	Open in IMG/M
3300012210\|Ga0137378_10782696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	866	Open in IMG/M
3300012211\|Ga0137377_10250320	Not Available	1702	Open in IMG/M
3300012212\|Ga0150985_111004970	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300012582\|Ga0137358_10162051	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1524	Open in IMG/M
3300012683\|Ga0137398_11149175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300012685\|Ga0137397_10397846	Not Available	1026	Open in IMG/M
3300012685\|Ga0137397_11065603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300012896\|Ga0157303_10050262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	853	Open in IMG/M
3300012922\|Ga0137394_10321488	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1322	Open in IMG/M
3300012923\|Ga0137359_10138795	Not Available	2164	Open in IMG/M
3300012923\|Ga0137359_10500350	All Organisms → cellular organisms → Bacteria → PVC group	1072	Open in IMG/M
3300012923\|Ga0137359_10604668	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300012944\|Ga0137410_10240246	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1416	Open in IMG/M
3300012944\|Ga0137410_10432647	Not Available	1065	Open in IMG/M
3300012988\|Ga0164306_11743867	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	541	Open in IMG/M
3300013308\|Ga0157375_12315521	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	640	Open in IMG/M
3300014154\|Ga0134075_10101465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1215	Open in IMG/M
3300014159\|Ga0181530_10033949	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3574	Open in IMG/M
3300014325\|Ga0163163_10778371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1020	Open in IMG/M
3300014502\|Ga0182021_10118214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3079	Open in IMG/M
3300014839\|Ga0182027_11472164	Not Available	671	Open in IMG/M
3300014865\|Ga0180078_1049991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	698	Open in IMG/M
3300014870\|Ga0180080_1102580	Not Available	509	Open in IMG/M
3300014968\|Ga0157379_10557509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1067	Open in IMG/M
3300014969\|Ga0157376_11922330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300015252\|Ga0180075_1033929	All Organisms → cellular organisms → Eukaryota → Opisthokonta	792	Open in IMG/M
3300015371\|Ga0132258_10903562	All Organisms → cellular organisms → Bacteria	2229	Open in IMG/M
3300015371\|Ga0132258_11185182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1931	Open in IMG/M
3300015371\|Ga0132258_11298907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1839	Open in IMG/M
3300015372\|Ga0132256_100688079	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1138	Open in IMG/M
3300015373\|Ga0132257_102219754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	710	Open in IMG/M
3300015374\|Ga0132255_103365286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	681	Open in IMG/M
3300017659\|Ga0134083_10220373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	787	Open in IMG/M
3300017931\|Ga0187877_1316663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300018013\|Ga0187873_1000107	All Organisms → cellular organisms → Bacteria	95103	Open in IMG/M
3300018016\|Ga0187880_1134644	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300018016\|Ga0187880_1374450	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	600	Open in IMG/M
3300018018\|Ga0187886_1281439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300018024\|Ga0187881_10317247	Not Available	645	Open in IMG/M
3300018025\|Ga0187885_10056991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1990	Open in IMG/M
3300018071\|Ga0184618_10392898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300018081\|Ga0184625_10008724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4630	Open in IMG/M
3300018422\|Ga0190265_13843349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300018469\|Ga0190270_10855812	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300019875\|Ga0193701_1109642	Not Available	506	Open in IMG/M
3300020202\|Ga0196964_10440085	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300021088\|Ga0210404_10065341	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1754	Open in IMG/M
3300021344\|Ga0193719_10233762	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300021559\|Ga0210409_10039979	All Organisms → cellular organisms → Bacteria	4454	Open in IMG/M
3300024254\|Ga0247661_1053967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738	Open in IMG/M
3300025460\|Ga0208562_1052424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	882	Open in IMG/M
3300025936\|Ga0207670_10094966	All Organisms → cellular organisms → Bacteria → Proteobacteria	2117	Open in IMG/M
3300026088\|Ga0207641_11377581	Not Available	706	Open in IMG/M
3300026116\|Ga0207674_10240692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1756	Open in IMG/M
3300027854\|Ga0209517_10408633	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300028819\|Ga0307296_10584212	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300030053\|Ga0302177_10550708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300030659\|Ga0316363_10383304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300031231\|Ga0170824_114393221	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300031720\|Ga0307469_11383534	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300031941\|Ga0310912_10685159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	795	Open in IMG/M
3300032076\|Ga0306924_10645529	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1194	Open in IMG/M
3300032076\|Ga0306924_11928492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	611	Open in IMG/M
3300032144\|Ga0315910_10705111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	784	Open in IMG/M
3300032397\|Ga0315287_11916606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	656	Open in IMG/M
3300033004\|Ga0335084_11196021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	760	Open in IMG/M
3300033482\|Ga0316627_102370092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	558	Open in IMG/M
3300033521\|Ga0316616_103992049	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.24%
Host-Associated	Host-Associated	22.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.28%
Plants	Host-Associated → Plants	22.76%
Aquatic	Environmental → Aquatic	21.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.82%
Freshwater	Environmental → Aquatic → Freshwater	11.38%
Sediment	Environmental → Aquatic → Sediment	10.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.13%
Peat	Environmental → Terrestrial → Peat	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.01%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.06%
Loam	Environmental → Terrestrial → Soil → Loam	3.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.25%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.44%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.01%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	8.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.06%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.25%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.44%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.63%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300014870	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015252	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_10322561	2228664022	Soil	RRLWHAGRNGRSGSGVVIAPEIDFAVLVACNRDVAAWKMRQAVKALIRTFAPKQTS
AP72_2010_repI_A01DRAFT_10556732	3300000579	Forest Soil	DTGHRLWHAGRIGRWGCGVVIAPEIDFAVLVAFNRDTVAWKARQTVKTLIRIFAPKQTS*
Ga0062384_1012586102	3300004082	Bog Forest Soil	GWFISTASWAKGTQPGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRCMAAWKTRQTVKALIRTFAPKRTS*
Ga0062589_1028107502	3300004156	Soil	WFISTASWAKGTQPGDTGRRLWHAGREGMSHSIVVIAPEIDFAVLVMCNRDADIAFWKTRQTVKALIRTFAPKRTS*
Ga0062595_1002691213	3300004479	Soil	PGDTGRRLWHAGRNGRSGSGVVIAPEIDFAVLVACNRDVAAWKMRRAVKTLIRTFAPKQTQ*
Ga0065705_107766621	3300005294	Switchgrass Rhizosphere	RLWHAGSNGRWNCGVVIAPEIDFAVLVACNRAIAAWKTRQTVKALIRKFAPKRTS*
Ga0066388_1029463192	3300005332	Tropical Forest Soil	GTQPGDTGRRLWHAGSNGKWGSGVVIAPEIDFAVLVACNRAIAAWKTRQAVRALIREFGPKRTS*
Ga0068868_1006273391	3300005338	Miscanthus Rhizosphere	QPGDTGRRLWHAGSNGRWNCSVVIAPEIDFAVLVACNRGWHSIAAWKTRQTLKALIRTFAPYRTS*
Ga0070692_101712673	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	AGWFISTASWAKGARPGDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPYQSSDGLEAHSMKRLE*
Ga0070705_1010068171	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GRRLWHAGSNGRWNCSVVIAPEIDFAVLVACNRGWHSIAAWKTRQTVKALIGSVLI*
Ga0068857_1012822802	3300005577	Corn Rhizosphere	QPGDTGRRLWHAGSAGRWNACVGIAPEIDFAVLAACNRGWKGIAAWKTRQALKELIRTFACK*
Ga0066653_105136572	3300006791	Soil	GDTGRSLWHGGRHGMSHSVVCIAPEIDFAVLVTCNHGIAIWKTRRTVKALIRTFAPKRTP
Ga0066665_102423201	3300006796	Soil	KGTQPGDTGRRLWHAGSNGRWNCGVFIAPEIDFAVLVACNRGLDIAAWKTRQTVKALIRTFAPKRTS*
Ga0066665_113171313	3300006796	Soil	APAVTYRAAWFISTASWAKGTQPGDTGRRLWHAGSNGRWNAAVFIAPEIDFAVLLACNRGWQGIAAWKTRQTVKALIRTFAPKRTP*
Ga0075421_1020158242	3300006845	Populus Rhizosphere	ASWAKGTQPGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRQRH*
Ga0075430_1014619882	3300006846	Populus Rhizosphere	AVTYRAGWFISTASWAKGTQPGDTGRRLWHAGSNGRWGCGVVIAPEIDFAVLVACNRAIAAWKTRQTLKALIRTFAPKRTS*
Ga0075433_112479592	3300006852	Populus Rhizosphere	AGWFISTASWAKGARPGDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKRTS*
Ga0075420_1010558881	3300006853	Populus Rhizosphere	TASWAKGTQPGDTGRRLWHAGSNGRWNAGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRAFAPQRTS*
Ga0075420_1016698881	3300006853	Populus Rhizosphere	RAGWFISTASWAKGTQPGDTGRRLWHAGSNGRWGCGVVIAPEIDFAVLVAFNRAIAAWKTRQTLKALIRTFAPKRTS*
Ga0075425_1028276312	3300006854	Populus Rhizosphere	SWAKGTQPGDTGRRLWHAGSNGRWNCSVVIAPEIDFAVLVACNRGWHSIAAWKTRQTLKALIRTFAPKRTS*
Ga0079215_117334951	3300006894	Agricultural Soil	GWFISTSSWAKGTQPGDTGRSLWHGGKEGMSHSVVCIAPEIDFAVLVACNHGIAIWKTRQTVKALIRTFAPKRTS*
Ga0079216_109999283	3300006918	Agricultural Soil	TYRAGWLISRASWAKGARPGDTGHYLWHGGRNGMSISVVCIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKRTS*
Ga0079218_117964731	3300007004	Agricultural Soil	ASWARGTRPGDTGRRLWHAGRIGRCIAGVFIAPEIDFAVLVACNRGGIAAWKTRQAVKTMIRTFALKRTS*
Ga0099793_104165171	3300007258	Vadose Zone Soil	TGRSLWHGGRHGMSHSVVVIAPEIDFAVLVACNHGIAAWKTRQTVKALIRTFAPKRTS*
Ga0111539_130744951	3300009094	Populus Rhizosphere	VTYCAGWFISTASWAKGTQPGDTGRRLWHGGREGMSHSIVVIAPEIDFAVLVACNRDIAIWKTRQTVKALIRTFRPNGPHDRPGSEVED*
Ga0066709_1030769562	3300009137	Grasslands Soil	RRLWHAGSNGRWNAGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS*
Ga0066709_1041626431	3300009137	Grasslands Soil	RRLWHAGSNGRWNAGVVIAPEIDFAVLVACNRGIAAWKTRQAVKALIRAFAPKRTS*
Ga0114129_122279491	3300009147	Populus Rhizosphere	HAGSNGRWNCGVFLAPEIDFAVLVACNRGVDIAAWKTRQTVKALNRTFAPNRTS*
Ga0114129_133831962	3300009147	Populus Rhizosphere	AGSNGRWNCSVVIAPEIDFAVLVACNRGWHSIAAWKTRQTVKALIRTFAPKRTS*
Ga0105243_131375961	3300009148	Miscanthus Rhizosphere	PGDTGRRLWHAGSNGRWNCGVAIAPEIDFAVLVACNRGIAAWKTRQTLKALIRTFAPKRTS*
Ga0111538_115978781	3300009156	Populus Rhizosphere	LWHAGSNGRWTCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS*
Ga0111538_130496161	3300009156	Populus Rhizosphere	TGRRLWHAGSNGRWTCGVVIAPEIDFAVLVACNRGWGGIAAWKTRQALKALIRTFAPERAS*
Ga0116108_11857271	3300009519	Peatland	TRPGDTGRRLWTGESNGRWNCGVFIAPEIDFAVLVACNRGLDIAVWKTCQAAKALIRAFAPKRTS*
Ga0116137_11885712	3300009549	Peatland	TGRRLWTGGSNGRWNCGVFIAPEIDFAVLVACNRGLDIAVWKTCQAAKALIRAFAPKRTS
Ga0105249_113255501	3300009553	Switchgrass Rhizosphere	RAGWFISTSSWAKGTQPGDTGRSLWHGGRHGMSHSVVCIAPEIDFAVLVACNHGIAIGKTRQTVKALIRTFAPKQTS*
Ga0105347_10401581	3300009609	Soil	LATGDTAPAVSYRAGWLISTSSWAKGTRPGDTGRRLWHAGRIGRWGSGVVVAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS*
Ga0105347_12423223	3300009609	Soil	RLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQAVKALIRALAPKRTS*
Ga0116120_10161051	3300009641	Peatland	GGSNGRWNCGVFIAPEIDFAVLVACNRGLDIAVWKTCQAARALIRAFAPKRTS*
Ga0105252_103409982	3300009678	Soil	GITRLATGDAAPAVTYCAGWFISTASWAKGRPGDTGHYLWHGGRYGRSHSVVCIAPEIDFAVLVACNSDIAILKTRRTVKALIRTFAPKRTS*
Ga0116217_108497872	3300009700	Peatlands Soil	HGGSNGMSHCVASIAPEIDFAVLVACNRGLDIAIWKTRQAARALIRAFAPKRTS*
Ga0134111_102444142	3300010329	Grasslands Soil	RRLWHAGSNGRWNAAVFIAPEIDFAVLLACNRGWQGIAAWKTRQTVKALIRTFAPKRTP*
Ga0126376_115018222	3300010359	Tropical Forest Soil	AAPAVTYCAGWLISTASWARGTRPGDTGRRLWHGGRNARAGSGVAIAPEIDFAILAACNRDVAAWKMRQAVRELIRTFAPKRTS*
Ga0134066_100163234	3300010364	Grasslands Soil	RRLWHAGSNGRWNCGVVIAAEIDFAVLAACNRGMAAWKTRQTVKALIRTFAPKRTS*
Ga0126379_132319812	3300010366	Tropical Forest Soil	RRLWHGGRNARAGSGVVIAPEIDFAVLAACNRDVAGWKMRQALKAMIRTFAPKRTS*
Ga0134124_103912273	3300010397	Terrestrial Soil	GWFISTASWAKGARPGDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKQTSII*
Ga0134127_1000262811	3300010399	Terrestrial Soil	YRAGWFISTASWAKGTQPGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS*
Ga0134123_121912272	3300010403	Terrestrial Soil	FISTSSWAKGTQPGDTGRRLWHAGSNGRWNCSVVIAPEIDFAVLVACNRGWHSIAAWKARQALKALIRTFAPKRTSR*
Ga0137325_10772041	3300011415	Soil	TGRYLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGWHGIAAWKTRQTVKALIQAFAPKRTTCSVA*
Ga0137436_10235061	3300011423	Soil	KGTQPGDTGRRLWHGGSNGRWNCGVSIAPEIDFAVLVACNRGWLGIAAWKTRQTLKALIRTFAPKRTS*
Ga0137423_10011761	3300011430	Soil	GWFISTSSWAKGTQPGDTGRSLWHGGKEGMSHSVVCIAPEIDFAVLVACNQGIAIWKTRQTVKALIRTFATKRTS*
Ga0137433_12452771	3300011440	Soil	DAGPAVTYRAGWFISTASWAKGARPGDTGRRLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKRTS*
Ga0137463_13488591	3300011444	Soil	PAVTYRAGWFISTASWAKGTRPGDTGRRLWHAGRIGRWGSGVVVAPEIDFAVLVARNRAIAAWKTRQTVKALIRTFAPKRTS*
Ga0137365_102368372	3300012201	Vadose Zone Soil	WFISTSSWAKGTQPGDTGRSLWHGGRHGMSHSVVVIAPEIDFAVLVACNHGIAIWKTRQTVKALIRTFAPKRTS*
Ga0137380_105815271	3300012206	Vadose Zone Soil	SWAKGTQPGDTGRSLWHGGRHGMSHSVVVLAPEIDFAVLVACNHGIAIWKTRQAVKALIRTFAPKRTP*
Ga0137378_103056161	3300012210	Vadose Zone Soil	GTQPGDTGRRLWHAGSNGRWNCGVFIAPEIDFAVLVACNRGIAAWKTRQTLKALIRTFAPKRTS*
Ga0137378_107826963	3300012210	Vadose Zone Soil	YRAGWFISTASWAKGARPGDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKRT*
Ga0137377_102503204	3300012211	Vadose Zone Soil	WHGGRQGMSLSVVCIAPEIDFAVLVACNRGIAWKTRQTVKALIRTFAPKRTP*
Ga0150985_1110049702	3300012212	Avena Fatua Rhizosphere	WHAGSNGRWNAGVVIAPEIDFAVLVACNRGIAAAWKTRQTVRALIRTFAPKRTSAYWPGSEVED*
Ga0137358_101620511	3300012582	Vadose Zone Soil	PGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKQT
Ga0137398_111491752	3300012683	Vadose Zone Soil	RLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKQT*
Ga0137397_103978462	3300012685	Vadose Zone Soil	AKGARPGDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRGWQGIAAWKTRQTVKALIRTFAPKQTS*
Ga0137397_110656031	3300012685	Vadose Zone Soil	TRLAIGDAAPAVTYRTGWFISTSSWAKGTQPGDTGRSLWHGGRHGMSHSVVVIAPEIDFAVLVACNHGIAAWKTRQTVKALIRTFAPKRTS*
Ga0157303_100502621	3300012896	Soil	LLATGDAGPAVTYRAGWFISTSSWAKGTQPGDTGRRLWHGGRNGMSHSVVCIAPEIDFAVLVACNHGIAAWKTRQTVKALIRTFAPKRTS*
Ga0137394_103214883	3300012922	Vadose Zone Soil	GWFISTSSWAKGTQPGDTGRSLWHGGRHGMSHSVVCIAPEIDFAVLVACNHGIAAWKTRRTVKALVRTFAPKRTP*
Ga0137359_101387951	3300012923	Vadose Zone Soil	GRCLWHGGSNGISHSVVCIATEIDFAVLVACNRGWSGIAAWKTRQALKALIRTFAPKQTS
Ga0137359_105003501	3300012923	Vadose Zone Soil	GWLISTASWAKGTQPGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKQT*
Ga0137359_106046683	3300012923	Vadose Zone Soil	ASWAKGTQPGDTGRRLWHAGSNGRWNAGVVIAPEIDFAVLVACNRAIAAWKTRQTVKALIRTFAPKRTP*
Ga0137410_102402461	3300012944	Vadose Zone Soil	RRLWHAGSNGRWNCSVVIAPEIDFAVLVACNRGWLGIVVWKTRQALKALIRTFAPKRTL*
Ga0137410_104326471	3300012944	Vadose Zone Soil	PGDTGRRLWHAGSNGRWNCSVVIAPEIDFAVLVACNRGWHSIAAWKTRQALKALIRTFAPKRTS*
Ga0164306_117438671	3300012988	Soil	SWARGTRPGDTGRRLWHAGRIGRCIAGVFIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKRTS*
Ga0157375_123155211	3300013308	Miscanthus Rhizosphere	RGTQSGDTGRRLWHAGSNGRWGSAVVIAPEIDFAVLVACNRAIAAWKIRQTVKALIRTFAPKRPHDRTENKLGAAR*
Ga0134075_101014651	3300014154	Grasslands Soil	PAVTYCAGWLISTASWAKGTQPGDTGRRLWHGGKEGMSHSVVVIAPEIDFAVLVACNRGIAWNTRQTVKALIRTFAPKRTP*
Ga0181530_100339491	3300014159	Bog	DTGRRFWHGGSDGMSHSVVCIAPEIDFAVLVACNRGLDIAIWKTRQAARALIRAFAPKWTS*
Ga0163163_107783712	3300014325	Switchgrass Rhizosphere	VPAGLSGTSRWAKGAQPGDTGRRFWHGGSDGMSHSVVCIAPEIDFAVLVACNRGPDIAIWKTRQAVKALIRTFAPERTS*
Ga0182021_101182141	3300014502	Fen	RRLWTGGSNGRWNCVASIAPELDFAVLVACNRGLDIAVWKTCQAAKALIRAFAPKRTS*
Ga0182027_114721642	3300014839	Fen	GGSNGRWNCVASIAPELDFAVLVACNRGLDIAVWKTCQAARALIRAFAPKRTS*
Ga0180078_10499911	3300014865	Soil	TGRRLWHAGSNGRWNAGVFIAPEIDFAVLVACNHGIAAWKTRQAVKALIRTFAPKRTP*
Ga0180080_11025802	3300014870	Soil	GSNGRWNAGVFIAPEIDFAVLVACNRGWQGIAAWKTRQTVKALIRAFAPKQTS*
Ga0157379_105575092	3300014968	Switchgrass Rhizosphere	ASWAKGARPGDTGHYLWHGGRNGMSHSVACIAPEIDFAVLVACNRDIAILKTRQTVKALIRRFAPRRTSPKAEG*
Ga0157376_119223301	3300014969	Miscanthus Rhizosphere	AGSDGMSHSVVCIAPEIDFAVLVACNRGPHIAMWKTRRVVRALIRAFAPKRTSYWPGSEVEN*
Ga0180075_10339291	3300015252	Soil	TGRRLWHGGSNGMWNCGAFFAPEIDFAVLVACNRGIAAWKTRQTLKALIRTFAPKRTS*
Ga0132258_109035621	3300015371	Arabidopsis Rhizosphere	STASWAKGARPGDTGHYLWHGGREGMSHSIVVIAPEIDFAVLVACNRDIAILKTRRVVRALIRAFAPKQTSII*
Ga0132258_111851821	3300015371	Arabidopsis Rhizosphere	TGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGWHSIAAWKTRQTLMALIRTFAPKRTS*
Ga0132258_112989071	3300015371	Arabidopsis Rhizosphere	RGLNFLATGDAAPAVTYSAGWLISTASWARGTHPAHTGRRLWHAGRNARSGSAVVIAPEIDFGLLVACKRDVAAWKMRRAVKALIRTFAPKQTS*
Ga0132256_1006880791	3300015372	Arabidopsis Rhizosphere	GSNGRWNCGVVIAPEIDFAVLVACNRGWHSIAAWKTRQTLMALIRTFAPKRTS*
Ga0132257_1022197542	3300015373	Arabidopsis Rhizosphere	WHAGSNGRWNCGVVIAPEIDFAVLVACNRGSAAWKTRQTVKALIRTFAPKRTS*
Ga0132255_1033652861	3300015374	Arabidopsis Rhizosphere	LRDIGRRLWHAGSNGRWNAGVVIAPEIDFAVLIACNRAWLGIAAWKTGQTVKALIRTFAPKRTS*
Ga0134083_102203731	3300017659	Grasslands Soil	RLWHAGSNGRWNCGVVIAAEIDFAVLAACNRGMAAWKTRQTVKALIRTFAPKRTP
Ga0187877_13166631	3300017931	Peatland	PGDTGRRLWHGGSNGVSHSVAVIAPEIDFAVLVACNRGLDIALWKTCQVAKALIRTFAPKRIS
Ga0187873_10001071	3300018013	Peatland	RICHGGSNGMSHSVAFIAPEIDFAVLVACNRGLDIAIWKTRQAARALIRTFAPKRTS
Ga0187880_11346441	3300018016	Peatland	GTQPGDTGRSLWHGGRQGMSHSVVCIAPGIDFAVLVACNRGLDIAAWKTRQAAKALIRTFAPKRTS
Ga0187880_13744502	3300018016	Peatland	AKGTQPGDTGRRFWTGGSNGQWLCAAFIAPEIDFAVLVARNRGLDIAIWKTRQAAKALIRAFAPKRTS
Ga0187886_12814391	3300018018	Peatland	TGRRFWTGGSNGQWLCAAFIAPEIDFDVLVACKRGLDIAIWKTRQAARALIRAFAPKRIS
Ga0187881_103172471	3300018024	Peatland	WTGGSNGQWLCAAFIAPEIDFAVLVACNRGLDIALWKTRQAAKALIRTFAPKRTS
Ga0187885_100569912	3300018025	Peatland	FWTGGSNGQWLCAAFIAPEIDFAVLVACNRGLDIAIWKTRQAAKALIRAFAPKQTS
Ga0184618_103928981	3300018071	Groundwater Sediment	STSSWAKGTQPGDTGRSLWHGGRHGMSHSVVCIAPEIDFAVLVACNRGWLGIAAWKTRQTLKALIRTFAPKRTS
Ga0184625_100087241	3300018081	Groundwater Sediment	GWLISTASWAKGTQPGDTGRRLWHAGSNGRWNAGVFIAPEIDFAVLVACNRGWLGIAAWKTRQTVKALIRTFAPKRTS
Ga0190265_138433492	3300018422	Soil	RLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGPDIAIWKTRRVVRALIRAFAPKRTS
Ga0190270_108558122	3300018469	Soil	ASWARGTRAGDTGRRLWHAGSNGRWNCAVVIAPEIDFAVLVACNRGWHSIAAWKTRQALKALIRTFAPKRTP
Ga0193701_11096421	3300019875	Soil	WAKGARPGDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTLKALIRTFAPKRTS
Ga0196964_104400851	3300020202	Soil	KGTQPGDTGRRLWHGGSNGRWNCGVCIAPEIDFAVLVACNRGWLGIAAWKTRQTLKALIRTFAPKRTS
Ga0210404_100653413	3300021088	Soil	SWAKGTRPGDTGHYLWHGGSDGMSHSVVCIAPEIDFAVLIACNRGPDFAIWKTRQAVKSLIRTFALKRTS
Ga0193719_102337621	3300021344	Soil	GSNGRWNCGVVIAPEIDFAVLVACNRGLDIAAWKTRQTVKALIRTFAPKRTS
Ga0210409_100399795	3300021559	Soil	AGWFISTASWAKGTQPADTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS
Ga0247661_10539672	3300024254	Soil	ASWARGTRAGDTGHYLWHGGREEMSHSIVVIAPEIDFAVLVACNRGSQGIAAWKIRRTLKALIRTFAPEPTS
Ga0208562_10524241	3300025460	Peatland	KGTQPGDTGRRFWTGGSNGQWLCAAFIAPELDFAVLVACNRGLDIAVWKTLQVAKALIRAFAPKRTS
Ga0207670_100949661	3300025936	Switchgrass Rhizosphere	ARPGDTGRRLWHAGSNGRWNCGVVIAPEVDFAVLVACNRGWHSIAAWKTRQTLKALIRAFAPKRTS
Ga0207641_113775812	3300026088	Switchgrass Rhizosphere	GWLISTASWAKGTQPGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS
Ga0207674_102406921	3300026116	Corn Rhizosphere	APAVTYCAGWFISTASWAKGARPVDTGHYLWHGGRNGMSHSVVCIAPEIDFAVLVACNRDIAILKTRQTVNALIRTFAPKLTS
Ga0209517_104086332	3300027854	Peatlands Soil	RPGDTGRRFWHGGSDGISHSVVCIAPEIDFAVLVACNRGLDIAVWKTRQAVKALIRTFTPKRTS
Ga0307296_105842122	3300028819	Soil	PAVTYCAGWFISTASWAKGTQPADTGRRLWHGGSNGRWNCGVVIAPEIDFAVLVACNRDIAILKTRQTVKALIRTFAPKQTS
Ga0302177_105507082	3300030053	Palsa	RPGDTGRRLSHGGSNGRWNCIVSIAPEIDFDVLVACNRGLDIAVWKTYQATKALIRAFAPKLTSR
Ga0316363_103833041	3300030659	Peatlands Soil	KGTRPGDTGRRFWHGGSDGISHSVVCIAPEIDFAVLVACNRGIAAWKTRQTVKALIRTFAPKRTS
Ga0170824_1143932211	3300031231	Forest Soil	LISTASWARGTRSGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGWHSIAAWKTRQTLKALIRAFAPKQTS
Ga0307469_113835341	3300031720	Hardwood Forest Soil	WLISTASWAKGTQPGDTGRRLWHAGSNGRWNCGVVIAPEIDFAVLVACNRGWRGIAAWKTRQAVKALIRTFAPKRTS
Ga0310912_106851591	3300031941	Soil	GDAGPAVIYRAGWFISTASWAKGTYSGHTGRCLWHGGSNGISHSVVCIAPEIDFAVLVACNGPITVIWKTRRMVRALIRRFATMG
Ga0306924_106455292	3300032076	Soil	RRLWHGGSDGMSHSGVSIAPEIDFAVLVVCNRGLDIAVWKTRQAVRALIRAFASKRAS
Ga0306924_119284921	3300032076	Soil	TGRRLWHGGSDGMSHSGVSIAPEIDFAVLVACNRGLDIAVWKTRQAVRALIRAFAPKRTS
Ga0315910_107051112	3300032144	Soil	RLWHAGSNGRWNSGVAIAPEIDFAVLVACNRGVDIAAWKARQAVKALIRTFAPKRTS
Ga0315287_119166062	3300032397	Sediment	LWHGGSNGMSHSTTFIAPEIDFAVLVACNRGLDIAIWKTRQAARALIRTFAPKRTS
Ga0335084_111960211	3300033004	Soil	GNTGRHFWHGGSNGISHTVTCIAPEIDFAVLVACNRGLDIAVWNTRQVVRALIRTFAPERTS
Ga0316627_1023700922	3300033482	Soil	RCLWHGGSNGISHTVVCIAPEIDFAVLVACNRGLDIAIWKTREAVKSLIRTYS
Ga0316616_1039920492	3300033521	Soil	TGRRLWTGGSNGQWLCAAIIAPEIDFAVLVACNRGLDIAIWKSRQAARTLIRTFAPKLNS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069946

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences