Metagenome Family F069977

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069977
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	95 residues
Representative Sequence	LPIDQRRRDEIAAAVAAYDSANPEARLPRSTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYQLHLPPVQQ
Number of Associated Samples	81
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.80 %
% of genes near scaffold ends (potentially truncated)	40.65 %
% of genes from short scaffolds (< 2000 bps)	93.50 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.976 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (13.821 % of family members)
Environment Ontology (ENVO)	Unclassified (30.081 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.228 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.80% β-sheet: 8.00% Coil/Unstructured: 55.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.0: automated matches	d4mtdb_	4mtd	0.70672
a.4.5.0: automated matches	d7dh8a_	7dh8	0.66838
a.4.5.0: automated matches	d2xiga_	2xig	0.66314
a.4.5.0: automated matches	d4lmya_	4lmy	0.66042
a.4.5.0: automated matches	d2fe3a_	2fe3	0.65663

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF13730	HTH_36	31.71
PF04796	RepA_C	1.63
PF11964	SpoIIAA-like	0.81
PF13333	rve_2	0.81
PF13610	DDE_Tnp_IS240	0.81
PF13148	DUF3987	0.81
PF07681	DoxX	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.81
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.98 %
Unclassified	root	N/A	39.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.98 %
Unclassified	root	N/A	39.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.98 %
Unclassified	root	N/A	39.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.28 %
Unclassified	root	N/A	39.02 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	49.59 %
Unclassified	root	N/A	39.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	45.53 %
Unclassified	root	N/A	39.02 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.02 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.81 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.02 %
Neorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Neorhizobium	0.81 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.02 %
Nocardia transvalensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	0.81 %
unclassified Neorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Neorhizobium → unclassified Neorhizobium	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.02 %
Neorhizobium sp. S3-V5DH	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Neorhizobium → unclassified Neorhizobium → Neorhizobium sp. S3-V5DH	0.81 %
Nocardia transvalensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y02I1HOO	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	626	Open in IMG/M
3300002568\|C688J35102_120896320	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300002568\|C688J35102_120932971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2527	Open in IMG/M
3300004479\|Ga0062595_102683530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	501	Open in IMG/M
3300005337\|Ga0070682_100926225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	718	Open in IMG/M
3300005338\|Ga0068868_101755103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	586	Open in IMG/M
3300005339\|Ga0070660_100985035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	712	Open in IMG/M
3300005355\|Ga0070671_100506435	Not Available	1039	Open in IMG/M
3300005434\|Ga0070709_10618009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	836	Open in IMG/M
3300005434\|Ga0070709_11689689	Not Available	517	Open in IMG/M
3300005435\|Ga0070714_100661883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1006	Open in IMG/M
3300005435\|Ga0070714_101236544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	729	Open in IMG/M
3300005436\|Ga0070713_100014816	All Organisms → cellular organisms → Bacteria	5804	Open in IMG/M
3300005436\|Ga0070713_100150730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2068	Open in IMG/M
3300005436\|Ga0070713_100285828	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300005436\|Ga0070713_101726239	Not Available	608	Open in IMG/M
3300005564\|Ga0070664_102328093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	508	Open in IMG/M
3300005614\|Ga0068856_101083884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	819	Open in IMG/M
3300005614\|Ga0068856_102425555	Not Available	532	Open in IMG/M
3300005615\|Ga0070702_100596716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	827	Open in IMG/M
3300005718\|Ga0068866_10991746	Not Available	596	Open in IMG/M
3300005764\|Ga0066903_100378863	Not Available	2311	Open in IMG/M
3300005764\|Ga0066903_102391423	Not Available	1022	Open in IMG/M
3300005764\|Ga0066903_108476051	Not Available	524	Open in IMG/M
3300005842\|Ga0068858_101841944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	598	Open in IMG/M
3300006028\|Ga0070717_11948848	Not Available	530	Open in IMG/M
3300006028\|Ga0070717_12101708	Not Available	508	Open in IMG/M
3300006755\|Ga0079222_10383959	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300006755\|Ga0079222_10938633	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300006804\|Ga0079221_10479641	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300006806\|Ga0079220_10063757	All Organisms → cellular organisms → Bacteria → Proteobacteria	1789	Open in IMG/M
3300006806\|Ga0079220_10568626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	796	Open in IMG/M
3300006806\|Ga0079220_11412098	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300006806\|Ga0079220_11863108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	532	Open in IMG/M
3300006871\|Ga0075434_101649863	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300006914\|Ga0075436_101370208	Not Available	536	Open in IMG/M
3300006954\|Ga0079219_10579106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	814	Open in IMG/M
3300006954\|Ga0079219_10758346	Not Available	752	Open in IMG/M
3300006954\|Ga0079219_11063826	Not Available	681	Open in IMG/M
3300006954\|Ga0079219_11072649	Not Available	679	Open in IMG/M
3300006954\|Ga0079219_11098435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	674	Open in IMG/M
3300009092\|Ga0105250_10459840	Not Available	572	Open in IMG/M
3300009094\|Ga0111539_12861378	Not Available	559	Open in IMG/M
3300009101\|Ga0105247_11788181	Not Available	511	Open in IMG/M
3300009156\|Ga0111538_11332244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	906	Open in IMG/M
3300009156\|Ga0111538_12101714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	710	Open in IMG/M
3300009156\|Ga0111538_13270551	Not Available	564	Open in IMG/M
3300009545\|Ga0105237_12595241	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300009551\|Ga0105238_12755138	Not Available	528	Open in IMG/M
3300010373\|Ga0134128_11079522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	886	Open in IMG/M
3300010373\|Ga0134128_11808315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	672	Open in IMG/M
3300010375\|Ga0105239_12832927	Not Available	566	Open in IMG/M
3300010376\|Ga0126381_100588319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1582	Open in IMG/M
3300010396\|Ga0134126_12700035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	539	Open in IMG/M
3300010396\|Ga0134126_12723347	Not Available	536	Open in IMG/M
3300011119\|Ga0105246_11236987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	689	Open in IMG/M
3300012212\|Ga0150985_102007812	Not Available	1136	Open in IMG/M
3300012469\|Ga0150984_113711321	Not Available	1656	Open in IMG/M
3300012951\|Ga0164300_10518176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	685	Open in IMG/M
3300012958\|Ga0164299_11367510	Not Available	545	Open in IMG/M
3300012958\|Ga0164299_11575928	Not Available	516	Open in IMG/M
3300012960\|Ga0164301_11568065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300012984\|Ga0164309_11026044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	681	Open in IMG/M
3300012986\|Ga0164304_11149091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	624	Open in IMG/M
3300012988\|Ga0164306_10202528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1393	Open in IMG/M
3300012988\|Ga0164306_10663895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	824	Open in IMG/M
3300012989\|Ga0164305_12043361	Not Available	524	Open in IMG/M
3300013104\|Ga0157370_11003069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	756	Open in IMG/M
3300013105\|Ga0157369_11566084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	670	Open in IMG/M
3300013105\|Ga0157369_11869502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	609	Open in IMG/M
3300013296\|Ga0157374_11997399	Not Available	606	Open in IMG/M
3300013297\|Ga0157378_12631203	Not Available	556	Open in IMG/M
3300013306\|Ga0163162_11896621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	682	Open in IMG/M
3300013306\|Ga0163162_13090058	Not Available	535	Open in IMG/M
3300014325\|Ga0163163_11953533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	647	Open in IMG/M
3300014497\|Ga0182008_10325972	Not Available	809	Open in IMG/M
3300014497\|Ga0182008_10365005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	769	Open in IMG/M
3300014497\|Ga0182008_10932686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	513	Open in IMG/M
3300014745\|Ga0157377_11082182	Not Available	613	Open in IMG/M
3300014745\|Ga0157377_11350094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	560	Open in IMG/M
3300014745\|Ga0157377_11735722	Not Available	505	Open in IMG/M
3300015371\|Ga0132258_10773157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2420	Open in IMG/M
3300015371\|Ga0132258_11008187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2104	Open in IMG/M
3300015371\|Ga0132258_12380021	Not Available	1327	Open in IMG/M
3300015371\|Ga0132258_12579829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1270	Open in IMG/M
3300015372\|Ga0132256_101576117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	767	Open in IMG/M
3300015372\|Ga0132256_103124067	Not Available	557	Open in IMG/M
3300016371\|Ga0182034_11939504	Not Available	520	Open in IMG/M
3300018481\|Ga0190271_11877465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	710	Open in IMG/M
3300021374\|Ga0213881_10597578	Not Available	503	Open in IMG/M
3300021401\|Ga0210393_11407427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	557	Open in IMG/M
3300025900\|Ga0207710_10588228	Not Available	581	Open in IMG/M
3300025901\|Ga0207688_11035076	Not Available	518	Open in IMG/M
3300025915\|Ga0207693_10306318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244	Open in IMG/M
3300025916\|Ga0207663_10369202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1090	Open in IMG/M
3300025928\|Ga0207700_10005790	All Organisms → cellular organisms → Bacteria → Proteobacteria	7427	Open in IMG/M
3300025928\|Ga0207700_10344633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1296	Open in IMG/M
3300025928\|Ga0207700_10393183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1214	Open in IMG/M
3300025928\|Ga0207700_10585404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	992	Open in IMG/M
3300025928\|Ga0207700_11431597	Not Available	614	Open in IMG/M
3300025928\|Ga0207700_11629203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	570	Open in IMG/M
3300025929\|Ga0207664_10307658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1396	Open in IMG/M
3300025929\|Ga0207664_11282118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	652	Open in IMG/M
3300025936\|Ga0207670_11486748	Not Available	576	Open in IMG/M
3300025938\|Ga0207704_10607852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Neorhizobium → unclassified Neorhizobium → Neorhizobium sp. S3-V5DH	896	Open in IMG/M
3300025945\|Ga0207679_12197872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	500	Open in IMG/M
3300026023\|Ga0207677_10549333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1006	Open in IMG/M
3300026035\|Ga0207703_11625900	Not Available	621	Open in IMG/M
3300026035\|Ga0207703_11745887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	598	Open in IMG/M
3300026078\|Ga0207702_11643258	Not Available	635	Open in IMG/M
3300026095\|Ga0207676_10201064	Not Available	1761	Open in IMG/M
3300026116\|Ga0207674_11715650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	596	Open in IMG/M
3300026118\|Ga0207675_101031085	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300026118\|Ga0207675_101241188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	766	Open in IMG/M
3300027765\|Ga0209073_10474900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	524	Open in IMG/M
3300027907\|Ga0207428_10921783	Not Available	616	Open in IMG/M
3300031226\|Ga0307497_10670775	Not Available	532	Open in IMG/M
3300031708\|Ga0310686_102762916	Not Available	585	Open in IMG/M
3300031938\|Ga0308175_102389515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	592	Open in IMG/M
3300031939\|Ga0308174_11377618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	604	Open in IMG/M
3300031996\|Ga0308176_10862880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	949	Open in IMG/M
3300032013\|Ga0310906_10980177	Not Available	607	Open in IMG/M
3300032075\|Ga0310890_11557919	Not Available	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.47%
Host-Associated	Host-Associated	44.72%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.47%
Plants	Host-Associated → Plants	44.72%
Solid Waste	Engineered → Solid Waste	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.81%
Roots	Host-Associated → Plants → Roots	0.81%
Grass	Engineered → Solid Waste → Grass	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.89%
Loam	Environmental → Terrestrial → Soil → Loam	22.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.06%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Composting	Engineered → Solid Waste → Grass → Composting	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.63%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	10.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.06%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.25%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.44%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_00030020	2170459019	Switchgrass, Maize And Mischanthus Litter	LPIEQRRRDDIAAAVATYDSANPEARLPRTTVPLLAAMFPIKDVCQRSLQDLAAESFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYQLHLPSVRR
C688J35102_1208963202	3300002568	Soil	MPIDQHRRDEITAAVAAYDDAHPLSPLPHSTVRLLAAMFPVENVCQRSLQDLAAGFDRKRLSTNLRRLTAAGFLSRAPGSGSAPDTYQLHLPPVQR*
C688J35102_1209329711	3300002568	Soil	MPIDPRRRHEIAIAVVSYDPPLPRTAARLLAAMFPVEDLCQQSLDDIATGGFSRKSLPATLRRLVAAGFISRTPGSGVVPATYRLHLPPRVQP*
Ga0062595_1026835301	3300004479	Soil	MPIDPRRRHEIAIAVVAYDPPLPRTAARLLAAMFPVEDLCQQSLDDIATGGFSRKSLPATLRRLVAAGFVSRTPGSGVVPATYRLHLPPRVQP*
Ga0070682_1009262252	3300005337	Corn Rhizosphere	MPIDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVGDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHLPQRVQS*
Ga0068868_1017551031	3300005338	Miscanthus Rhizosphere	LPIEQRRRDEIAAAVAAYDSANPEARLPRSTVPLLAAMFPIEDSCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYQLHLPSVRR*
Ga0070660_1009850352	3300005339	Corn Rhizosphere	LPIDQRRRDEIAAAVAAYDSANPEVRLPRSTVSLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLVEAGFLSRQPGSGVVPDAYRLHLSAGRR*
Ga0070671_1005064351	3300005355	Switchgrass Rhizosphere	MPIDPCRRHQIAVAVVAYDSTNPPLPRMAARLLAAMFPIEDVCQRSLDDIATTGGLNRKSLPATLRRLAEAGLLSRTPGSGVVPATY
Ga0070709_106180091	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDQRRRDEIAAAVAAYDSANPLSPLPRNATRLLAAMFPIEDVCQRSLDEIATEGFNRKNLTAPLKRLIEAGFLSRVSGSGRVPDTYRLHLSPVRQ*
Ga0070709_116896891	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPRRRHEIAVAVVAYDTANPPLPRMAARLLAAMFPTESEDVCQRSLDDIATTGGLNRKGLPATLRRLAEAGFLSSTPGSGVVPTTYRLHLPP
Ga0070714_1006618832	3300005435	Agricultural Soil	SILLLPIDQRRRDEIAAAVAAYDSTNPEARLPRSTVPLLAAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVQG*
Ga0070714_1012365442	3300005435	Agricultural Soil	LPIDQCRRDEIAAAVAIYDSANPEARLPRSTVPLLAALFPIEDLCQRSLQDIAAEGFDRKRLAANLRRLVEAGLLSRTPGSGTVPDTYRLHLSQVQR*
Ga0070713_1000148168	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPRRRHEIALAVVAYDSANPPLPRTAAQLLTAMFPIEDVCRRSLDEIAATGGLNRKSLTASLRRLVEAGFLSRTPGSGVVPATYRQHLPPVQR*
Ga0070713_1001507303	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPRRRHEITLAVVAYDSANPQARLPRYAARLLAAMFPIEDVCQRSLDDIAAEGFNRKNLTSTLRRIAEAGLLSRTPGAGSEPDTYRLHLPLVRR*
Ga0070713_1002858283	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LPIDQRRRDEIAAVVAAYDSANPLSPLPRNTVPLLAAMFPTDDVCQRSRDDIAAAGSNRKNLTTPLRRLIAAGFLSRTQGSGVMPDTYRLHLPPVRR*
Ga0070713_1017262392	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LPIDQCRRDEIAAAVAIYDSANPEARLPRSTVPFLAALFPIEDLCQRSLQDIAAEGFDRKRLAANLRRLVEAGLLSRTPGSGTVPDTYRLHLSQVQR*
Ga0070664_1023280932	3300005564	Corn Rhizosphere	RPRSILLLPIDQRRRHEIAAAVAAYDNANTKARLPRSTVPLLTAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVRR*
Ga0068856_1010838842	3300005614	Corn Rhizosphere	LPIEQRRRDEIAAAVATYDSASPEARLPRSTVPLLAAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLLEAGFLSREPGSGVVPDTYRLHLPPVRR*
Ga0068856_1024255551	3300005614	Corn Rhizosphere	LPIEQRRRDEIAAAVTAYDSANPEVRLPRSTVPLLAAMFPLENVCQRSLQDIAAEGFDRKRLAASLRRLAEAGFLSRTPGSGVVPDTYQLHLPPVQQ*
Ga0070702_1005967162	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MPTVAARREAIAAAVEIYKHAYPEAPLPRQTVQLLTVMFASGDVCQRSLQNLAAEGFDRKRLAANLRRLADAGFLSREPGSGAVPDTYQLHLPPVRR*
Ga0068866_109917462	3300005718	Miscanthus Rhizosphere	LPIDQHRRDVIAAAVAAYDCANPEARLPRSTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLVEAGFLSRQPGSGVVPDAYRLHLSAGRR*
Ga0066903_1003788631	3300005764	Tropical Forest Soil	MPIDQRRRDEIAAAVAAYDDAVAPLPRDAVRLLCAMFPAEDVCQRSLDAIAKDGFDRRHLLRVLRRLVDAGFLSREPGSG
Ga0066903_1023914232	3300005764	Tropical Forest Soil	MPIDARRREEIAAAVAAYANAHPDVRLPRRTVELLAAMFPTEDVCQRSLDAIAAEGDLDRGRLASVLRRLVEAQLLSRERGSGKVPDTYHLHLPPVRR*
Ga0066903_1084760511	3300005764	Tropical Forest Soil	ICLAVPGTVPRRGRAAVVAYDSANPLSPLPRNTVRLLAAMFLMEDVRQRSLDEIAAEGFNRNLIAPLRRLVAAGFLSRTPGSGVMPNTYRLHLPPVRR*
Ga0068858_1018419441	3300005842	Switchgrass Rhizosphere	IDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVGDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHLPQRVQS*
Ga0070717_119488481	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPTVAARREAIAAAVEIYKHAYPEAPLPRQTVQLLAVMFASGDVCQRSLQDLAAEGFDRKRLAANLRRLADAGFLSREPGSGVVPDTYRLHLSPVRR*
Ga0070717_121017081	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPNNQRRHEIAVAVVAYDSANPQARLPRSAARVLAAMFPTDYVCQRSLDDIATMGGLNRKTLLGTLRRLVEGGLLSRVHGSGS
Ga0079222_103839592	3300006755	Agricultural Soil	LPIDQRRRHEIAIAVVAYESANPKARLPRNAARLLAAMFPTEDVCQLSLDGIAAEGFNRKNLSPTLRRLTDAGFLSRTPGSGSEPDTYRLCLPPVRR*
Ga0079222_109386331	3300006755	Agricultural Soil	DQPRRDEIAAAVATYDSANPLSPLPRNATRLLAAMFPTEDVCQRSLDEIATEGLNRKNLTAPLRRLIAAGFLSRVSGSGRVPDTYRLHLSPVRQ*
Ga0079221_104796411	3300006804	Agricultural Soil	MPIDQPRRDEIAAAVATYDSANPLSPLPRNATRLLAAMFPTEDVCQRSLDEIATEGLNRKNLTAPLRRLIAAGFLSRVSGSGRVPDTYRLHLSPVRQ*
Ga0079220_100637571	3300006806	Agricultural Soil	LPIDQHRRDEIAAAVAAYDSANPEARLPRTTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLVEAGFLFKEPGSGVVPHTYRLHLPPVRR*
Ga0079220_105686262	3300006806	Agricultural Soil	LPIDQCRRDEIAAAVAAYDSANPEARLPRSTVPLRAAMFPIEDVCRRSLQDIAAEGFDRKRLAANLRRLVEAGFLSKDPGSGVVPHTNRLHLPPVRL*
Ga0079220_114120982	3300006806	Agricultural Soil	MPIDPHRRNEIVAPIAAYDSANPLSPLPRNAARLLAAMFSIEDVCQRSLDEIATEGLNRKNLTAPLRRLIAAGFLSRVSGSGRVPDTYRLHLSPVRQ*
Ga0079220_118631081	3300006806	Agricultural Soil	RRRDEIAAAVAAYDSANPPLPRTAVRLLAAMFPTEDECRRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPEAGL*
Ga0075434_1016498631	3300006871	Populus Rhizosphere	MSIDPHRRHEIAVAVVAYDSANPPLPRMAARLLAAMFPIEDVCQRSLDDIATTGGLNRKSLPATLRRLVAAGFLSRTPGSGVVPATYRLHLPPRGQP*
Ga0075436_1013702081	3300006914	Populus Rhizosphere	LPIDQHRRDEIAAAVAAYDSANPEARLPRPTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLVEAGFLSRQPGSGVVPDTYRLHLPPVVP*
Ga0079219_105791062	3300006954	Agricultural Soil	RDEIAAAVAAYDSANPEARLPRSTVPLLAAMFPVEDVCQRSLQEIAAEGFDRKRLAANLRRLVEADFLSRKPGSDVVPDTYRLHLPPVQR*
Ga0079219_107583461	3300006954	Agricultural Soil	MPVDQQRRDEIAAAVAAYDNGNPLSPLPRNATRLLAAMFPIQDVCQRSLDEIATEGFNRKNLTAPLRRLMGAGLLSRVSGSGRVPDAY
Ga0079219_110638261	3300006954	Agricultural Soil	MPIDPHRRNEIVAAIAAYDTANPLSPLPRNAARLLAAMFSIEDVCQRSLDEIATEGFNRKNLTAPLKRLIEAGFLSRVSGSGRVPDTYRLHLSPVRQ*
Ga0079219_110726492	3300006954	Agricultural Soil	LPIDQCRRDEIAAAVAAYDSANPEARLPRSTVPLRAAMFPIEDVCRRSLQDIAAEGFDRKRLAANLRRLTEAGFLSRTPGSGVVPDTYRLHLPPVVP*
Ga0079219_110984351	3300006954	Agricultural Soil	MPNNQRRDEFALAILAHDSVNPLSPLPRNTARLLATMFPIEDVCQLSLDEIASEGFNRKNLSALLRRLIAAGFLSRTLGSGSEPDTYELHVPPVRR*
Ga0105250_104598401	3300009092	Switchgrass Rhizosphere	MPIDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVGDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHL
Ga0111539_128613782	3300009094	Populus Rhizosphere	MPINPRRRHEIALAVVAYDSANPPLPRTAAQLLAAMFPIEDVCQRSLDEIATAGFNRKSLTATLRRLVAAGFLSRTPGSGVMPDSYRLHLPPVR
Ga0105247_117881811	3300009101	Switchgrass Rhizosphere	MPTDQRRRDEITAAVAAYDSANPEARLPRSAVPLLAAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYQLHLPSVRR*
Ga0111538_113322442	3300009156	Populus Rhizosphere	MPIDQRRDEIAAAVAAYDNANPLSRLPRNAVPLLAAMFPIDDVCQRSLDDIAAAGFNRKNLTAPLRRLVEAGFLSRTQGSGIMPDTYRLHLPPVRQ*
Ga0111538_121017142	3300009156	Populus Rhizosphere	MPIDPRRRHEIAVAVVAYDSTNQPLPRTAVRLLAAMFPIEDVCQRSLDEIATQGFNRKNLTAPLRRLMMAGFLSRVSGSGRMPDTYQLHLPPVRR*
Ga0111538_132705511	3300009156	Populus Rhizosphere	LPIDQHRRDVIAAAVAAYDCANPEARLPRSTVPLLAAMFPTDDVCQRSLQDIAAEGFDRKRLAASLRRLAEVGFLSRTPGSGVVPDTYQLNLPPVRR*
Ga0105237_125952411	3300009545	Corn Rhizosphere	LLLPIDQRRRDEIAAAVAAYDSANPEARLPRTTVPLLAAMFPIKDVCQRSLQDLAAESFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVRR*
Ga0105238_127551381	3300009551	Corn Rhizosphere	LPIDQRRRDEIAAAVAAYDSANPEARLPRSTMPLLAAMFPIEDVCQRSLQDIAVEGFDRKRLAANLRRLAEAGFLSRTPGSGVLPDTYRLHLPL
Ga0134128_110795222	3300010373	Terrestrial Soil	MLIDQSLRDEIAAAVAAYDRTNSLSPLPRNTVQLLAAMFPSENLCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVRR*
Ga0134128_118083152	3300010373	Terrestrial Soil	SARPRSILLLPIDQRRRDEIAAAVAAYDSANPEARLPRSTVPLLAAMFAIEDVCQRSLQDIAAEGFDRKRLAASLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVRP*
Ga0105239_128329271	3300010375	Corn Rhizosphere	VIAAAVAAYDCANPEARLPRSTVPLLASMFPIDDVCQRSLQDLAAEGFDRKRLAANLRRLVEAGFLSRQPGSGVVPDSYRLHLPPQRQP*
Ga0126381_1005883193	3300010376	Tropical Forest Soil	MPIDQRRRDEIAAAVAAYDDAVAPLPRDAVRLLCAMFPAEDVCQRSLDAIAKDGFDRRHLLRVLRRLVDAGFLSREPGSGGSGANSLTSER*
Ga0134126_127000352	3300010396	Terrestrial Soil	AHARRWWASARPRSILLLPIDQHRRDEIAAAVAAYDSANPEVRLPRSTVPLLTAMFPIEDVCQRSLQDLAAEGFDRKRLATNLLRLVEAGFLSRQPGSGVVPDTYRLHLPPVQR*
Ga0134126_127233472	3300010396	Terrestrial Soil	MPIDQHRRDDIAAAVAAYDTANPEARLPRNAVPLLAAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVRR*
Ga0105246_112369871	3300011119	Miscanthus Rhizosphere	DSANPPMARTAARLQAAMFPIEDVCRRSLDDIATTGGFSRKTLSATLKRLVEAGFLSRETGAGVSPDTYQLHLPSGRQ*
Ga0150985_1020078122	3300012212	Avena Fatua Rhizosphere	LPIDQRRRDEIAAAVAAYDSTNPQSPLPRNAVPLLAAMFPIEDVCQRSLLDIAAEGFDRKRLAANLRRLMVAGFLSRTSGSGVVPDTYRLHLPPVRR*
Ga0150984_1137113211	3300012469	Avena Fatua Rhizosphere	MPIDQHRRDEITATVAAYDDAHPLSPLPHSTVRLLAAMCQRSLQDLAAEGLDRKRLSMNLRRLMAAGFMSRTPGSGSAPDLSA
Ga0164300_105181762	3300012951	Soil	MPIDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVEDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHLPPVRR*
Ga0164299_113675102	3300012958	Soil	MPIDQRRRDDIAAAVAAYDIANPLSRLPRNTVPLMAAMFPTDDVCQRSLDDIAAAGFNRKNLTAPLRRLVAAGFLSRTQGSGIMPDTYRLHLPPVRR*
Ga0164299_115759282	3300012958	Soil	MPIDQRRRDEIAAAVAAYNSAYPEARLPRSTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAVNLRRLAEAGFLSRTPGSGVVPDTYRLQLPPVRR*
Ga0164301_115680651	3300012960	Soil	HARRWWASARSRSILLLPIDHRRRDEIAAAVAAYDSANPLSPLPRNAVPLLAAMFPIEDVCQRSLDDIATEGFNRKNLVAPLRRLVAAGFLSRTPGSGVVPATYRLHLPPVRR*
Ga0164309_110260441	3300012984	Soil	MPIAERRRDDIAAAVTAHDRANPKGPLPRNAARLLAVMFPSEDVCQRSLQDLAGEGFDRKRLPAALKLLVEAGFLSRQLGSGVVPDTYRLHLPPVRP*
Ga0164304_111490912	3300012986	Soil	ALAVVAYDSANPPLPRTAAQLLTAMFPIEDVCRRSLDEIAATGGLNRKSLTASLRRLVEAGFLSRTPGSGVVPATYRQHLPPVQR*
Ga0164306_102025282	3300012988	Soil	MPIDPRRRHEIAVAVVAYDSANPPLPRTAVQLLAAMFPVEDMCQHSLDDIATAGFNRKSLTANLRRLVAAGFLSTTPGSGVVPATYRLHLPPVQR*
Ga0164306_106638952	3300012988	Soil	MPIDLRRRDDIAAAVDAYNRTHPNAPLPRNAVRLLVVMFPSEDVCQRSLQDLAGEGFDRKRLPAALKLLVEAGFLSRQLGSGVVPDTYRLHLPPVRS*
Ga0164305_120433611	3300012989	Soil	LPIDQRRRDEIAAAVAAYDNANPLSRLPRNTMPLLAAMFPTDDVCQRSLDDIAAAGFNRKNLTAPLRRLVEAGFLSRTQGSGIMPDTYRLHLPPVRR*
Ga0157370_110030692	3300013104	Corn Rhizosphere	MSIDPHRRHEIAVAVVAYDSANPPLPRMAARLLAAMFPIEDVCQRSLDDIATTGGLNRKSLPATLRRLVAAGFLSRTPGSGGVPATYRLHLSPVRQ*
Ga0157369_115660842	3300013105	Corn Rhizosphere	LPIDPRRRDEIAAAVAAYDNASSAMRLPRSTVPLLTAMFPIEDVCQHSLQDLAAEGFDRKRLAANLRRLADAGFLSRTPGSGVVPDAYRLHLPPVRQ*
Ga0157369_118695021	3300013105	Corn Rhizosphere	ESAAAVAAYDNANTPIEDVCQRSLQDIAAEGFDRKRLAANLRRLVEAGFLSKDPGSGVVPHTNRLHLPPVRL*
Ga0157374_119973991	3300013296	Miscanthus Rhizosphere	LPIDQRRRDEIAAAVAAYDSANPEARLPRSTVPLLASMFPIEDVCQRSLQDISAEGFDRKRLAANLRRLTEAGFLSRTPGSGVV
Ga0157378_126312032	3300013297	Miscanthus Rhizosphere	MPVDPRRRHEIAVAVVAYDSANPPLPRSVVRLLAAMFPIKDVCQRSLQDIAAEGFDRKRLAANLRRVADAGFLSRTPGSGVVPDTYRLHLPPVQR*
Ga0163162_118966211	3300013306	Switchgrass Rhizosphere	MPIDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVEDVYQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHLPPVRR*
Ga0163162_130900581	3300013306	Switchgrass Rhizosphere	MPIDPRRRDEIAAAVAAYDSANLEARLPRSTVPLLASMFPIDDVCQRSLQDLAAEGFDRKRLAANLRRLVEAGFLSRQPGSGVVPDSYRLHLPPQRQP*
Ga0163163_119535332	3300014325	Switchgrass Rhizosphere	LPIDQCRRDEIAAAVAAYDSANPEARLPRSTVPLLAAMFPIEDVCQRSLQGLAAEGFDRKRLAANLRRLAEAGFLSKQHGSGVVPDTYQLHLPPVQQ*
Ga0182008_103259722	3300014497	Rhizosphere	MPIDQHRRDDIAAAVAAYDTANPEARLPRNAVPLLAAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLVEAGFLSREPGSGVVPDTYQLHLSPVRR*
Ga0182008_103650052	3300014497	Rhizosphere	VATYDSANPEARLPRTTVPLLAAMFPIKDVCQRSLQDLAAESFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYQLHLPSVRR*
Ga0182008_109326861	3300014497	Rhizosphere	QHRRDEIAAAVAAYDSANPEARLPRTTVPLLAAMFPIEDVCKRSLQDIAAEGFDRKRLAANLRRLVEAGFLFKEPGSGVMPHTYRLHLPPVRL*
Ga0157377_110821821	3300014745	Miscanthus Rhizosphere	MPIDPCRRQEIAIAVVAYDSANPPLPRSVVRLLAAMFPIEDVCQRSLDEIATEGFNRKNLSATLRCLVDAGFLSRASGSGRVPDTYRLHLPSVRR*
Ga0157377_113500942	3300014745	Miscanthus Rhizosphere	LPIDQRRRHEITAAVAAYDNANTKARLPRSTVPLLTAMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDIYRLHLPPVRR*
Ga0157377_117357221	3300014745	Miscanthus Rhizosphere	LPIDQRRRDEIAAAVAAYDSANPLSRLPRNTVPLLAAMFPTDDVCQRSLDGIAAAGFNRKNLTAPLRRLVAAGFLSRTQGSGIMPDTYRLHLPPVRR*
Ga0132258_107731573	3300015371	Arabidopsis Rhizosphere	MPIDPRRRHEIAVAVVAYDSANPPLPRMAARLLAAMFPTEDVCQHSLDDIAAAGFNRKNLTAPLRQLIAAGFLSRTPGSGTAPDTYQLHLPPVRR*
Ga0132258_110081873	3300015371	Arabidopsis Rhizosphere	MPIDPRRRHEIALAVVAYDSANPPLPRSASRLLAVMFPTETEDVCRRSLDEIATTGGLNGKSLTATLRRLVAAGFLSRTPGSGVVPATYQLHLPQRVQS*
Ga0132258_123800211	3300015371	Arabidopsis Rhizosphere	MPIDQRRRDDIAAAVAAYDNANPLSRLPRNTVPLMAAMFPTDDVCQRSLDDIAAAGFNRKNLIAPLRRLVAAGFLSRTQGSGIMPDTYR
Ga0132258_125798293	3300015371	Arabidopsis Rhizosphere	MPIDQRRDEIAAAVASYDNANPLSRLPRNTVPLLAAMFPTDDVCQRSLDGIAAAGFNRKNLTAPLRRLVAAGFLSRTQGSGIMPDTYRLRLPPVRR*
Ga0132256_1015761171	3300015372	Arabidopsis Rhizosphere	MPINPRRRHEIAVAVVAYDSANPPLPRTAVQLLAAMFPVEDVCQHSLDEIATAGFNRKSLTANLRRLVAAGFLSRTPGSGVVPATYQLHLPQRVQS*
Ga0132256_1031240671	3300015372	Arabidopsis Rhizosphere	LPIDQRRRDEIAAAVAAYNSANPLSPLPRNTLALLATMFPVEGVCQRSLQGLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLP
Ga0182034_119395041	3300016371	Soil	LPIDQRRRDEIAAAVAAYDSANPLSPLPRTAARLLAAMFPTEDVCQRSLDDIAAEGFNRKSLTAALRRLIAAGFLSRTAGSGS
Ga0190271_118774651	3300018481	Soil	MPTDLRRRDYIAAAVAAYDSANPGAPLPRHTTRVLAFMFPSDDVCQQSLEAIASEGFDRTRLRATLRRLIEAGFLSRHPGSGVVPHTYRLHLPPVRS
Ga0213881_105975781	3300021374	Exposed Rock	MLAVTARREAIAAVETYKHAYSEALLPHQTVQLLSVRFASGDVCQRSLQDLAAEGFDRKRLAANLRRLVEAGFLSREPGSGAVPDTYRLHLAA
Ga0210393_114074271	3300021401	Soil	AHDSANPNAPLPRTAARLLAAMFPSEDVCQRSLQAIAEEGFNRKNLSSVLKYLVAAGFLSRKPGSGVVPNTYRLHLPSVRP
Ga0207710_105882282	3300025900	Switchgrass Rhizosphere	IEQRRQDEIAAAVAAYDSANPDVCQRSLQDLAAEGFDRKRLAANLRRLAGAGFLSRTPGSGVVPDTYRLHLPPVRR
Ga0207688_110350761	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVGDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVV
Ga0207693_103063182	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LPIDQRRRDEIAAAVATFDSANPKARLPRSTLPLLSAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLAEAGFLSRTPGSGSEPDTYRLHLPPVQR
Ga0207663_103692022	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LPIDQRRRDEIAAAVAVYDSANPHSPLPRNAVPLLATMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLMVAGFLSRTPGSGSAPDTYRLHLPSVQR
Ga0207700_100057903	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPRRRHEIALAVVAYDSANPPLPRTAAQLLTAMFPIEDVCRRSLDEIAATGGLNRKSLTASLRRLVEAGFLSRTPGSGVVPATYRQHLPPVQR
Ga0207700_103446331	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPRRRHEITLAVVAYDSANPQARLPRYAARLLAAMFPIEDVCQRSLDDIAAEGFNRKNLTSTLRRIAEAGLLSRTPGAGSEPDTYRLHLPLVRR
Ga0207700_103931832	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSIDPHRRHEIAVAVVAYDSANPPLPRMAARLLAAMFPIEDVCQRSLDDIATTGGLNRKSLPATLRRLVAAGFLSRTPGSGVVPATHRLHLPVVQR
Ga0207700_105854041	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RRPRRRHEIALAVVAYDSANPPLPRMAARLLAAMFPSEDVCQRSLDGIATTGGLNRKALPATLRRLVETRFLSRTPGSGVVPATYRLHLHQRVQS
Ga0207700_114315972	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LPIDQCRRDEIAAAVAIYDSANPEARLPRSTVPFLAALFPIEDLCQRSLQDIAAEGFDRKRLAANLRRLVEAGLLSRTPGSGTVPDTYRLHLSQVQR
Ga0207700_116292031	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AAVVAAYDSANPLSPLPRNTVPLLAAMFPTDDVCQRSRDDIAAAGSNRKNLTTPLRRLIAAGFLSRTQGSGVMPDTYRLHLPPVRR
Ga0207664_103076583	3300025929	Agricultural Soil	TRAMPIDPRRRHEIALAVVAYDSANPPLPRTAAQLLTAMFPIEDVCRRSLDEIAATGGLNRKSLTASLRRLVEAGFLSRTPGSGVVPATYRQHLPPVQR
Ga0207664_112821181	3300025929	Agricultural Soil	CSCPRPTGAALAQPRNTRAMPINERRRDDIAAAVAAYDSANPKARLPRNAALLLAVMFPTEDVCQRSLDDIATTGGLNRKSLPATLRRLVAAEFLSRVSGSGRVPDTYRLHLSPVQQ
Ga0207670_114867481	3300025936	Switchgrass Rhizosphere	MPIDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVGDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHLPQRVQS
Ga0207704_106078523	3300025938	Miscanthus Rhizosphere	LPIDQRRRDEIAAAVAAYDSANPLSPLPRNAVPLLAAMFPIEDVCQRSLDDIAAAGFNRKNLTSPLRRLLAAGFLSRTQGSGVMPDTYRLHL
Ga0207679_121978722	3300025945	Corn Rhizosphere	LLPIEQRRRDEIAAAVTAYDSANPEVRLPRSTVPLLAAMFPLENVCQRSLQDIAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYRLHLPPVRR
Ga0207677_105493331	3300026023	Miscanthus Rhizosphere	LPIDQHRRDEIAAAVAAFDNASPEARLPHSTVPLLATMFPIEDVCQRSLQDLAAEGFDRKRLAANLRRLAEAGFLSRTPGSGGVPDTYQLHLPSVRR
Ga0207703_116259002	3300026035	Switchgrass Rhizosphere	LPIDQRRRDEIAAAVAAYDSANPEARLPRPTVPLLAAMFPIEDVCQRSLQDISAEGFDRKRLAANLRRLAEAGFLSRTPGSGGVPDTYQLHLPSVRR
Ga0207703_117458871	3300026035	Switchgrass Rhizosphere	IDPRRRHEIALAVVAYDNANPLSRLPRNAVPLLAAMFPVGDVCQRSLDDIATAGFNRKNLIAPLRRLVAAGFLSRTPGSGVVPATYRLHLPQRVQS
Ga0207702_116432582	3300026078	Corn Rhizosphere	LPIEQRRRDEIAAAVTAYDSANPEVRLPRSTVPLLAAMFPLENVCQRSLQDIAAEGFDRKRLAASLRRLAEAGFLSRTPGSGVVPDTYQLHLPPVQQ
Ga0207676_102010641	3300026095	Switchgrass Rhizosphere	DARAHARRWWASARPRNRRAMPIDQRRRDEIAAAVAAYDSANLEARLPRSTVPLRAAMFPIEDVCRRSLQDIAAEGFDRKRLAANLRRLVEAGFLFKEPGSSVVPHTYRLHLPPVRR
Ga0207674_117156501	3300026116	Corn Rhizosphere	WWASARPRSILLLPIDQRRRDEIAAAVAAYDSANPEARLPRSTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLADAGFLSRTPGSGVVPDAYRLHLPPVRQ
Ga0207675_1010310851	3300026118	Switchgrass Rhizosphere	DQRRRDEIVAAVAAYDNANPLSPLPRNTVPLLAAMFPIDLCQRSLDDIAAAGFNRKNLTAPLRQIIAAGFLSRTPGSGTAPDTYQLHLPPVRR
Ga0207675_1012411882	3300026118	Switchgrass Rhizosphere	AVETYKHAYPEAPLPRQTVQLLGVMFASGDVCQRSLQDLAAEGFDRKRLAANLRRLVDAGLLSREPGSGVVPDTYRLHLPPVQR
Ga0209073_104749001	3300027765	Agricultural Soil	GAGGPRPRPRSILLLPIDQCRRDEIAAAVAAYDSANPEARLPRSTVPLRAAMFPIEDVCRRSLQDIAAEGFDRKRLAANLRRLVEAGFLSKDPGSGVVPHTNRLHLPPVRL
Ga0207428_109217832	3300027907	Populus Rhizosphere	MPIDPRRRDEIAAAVATYDSANPLSPLPRNAALLLAAMFPIEDVCQRSLDEIATQGFNRKNLTAPLRRLMMAGFLSRVSGSGRMPDTYQLHLPPVRR
Ga0307497_106707752	3300031226	Soil	MLTDLRRRDVIAAAVAAYDGAHPKARLPRNAAQLLAAMFPSEDECRRSLMAIAAEGFDRKRLPAALKRLVEAGFLSREPGSGVVADTYRLHLPPVRP
Ga0310686_1027629161	3300031708	Soil	MPIDPRHRDDIIAAVAAHDSANPSAPLPRTAARLLAAMFPSEDVCQRSPQAIAEEGFNRKNLSSVLKYLVAAGFLSRKPGSGVVPNTYRLHLPPVRP
Ga0308175_1023895151	3300031938	Soil	RRDEIAVAVAAYDSANPQSPLPRNAVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLMVAGFLSRTSGSGVVPDTYRLHLSPVQQ
Ga0308174_113776181	3300031939	Soil	LPIDQRRRDEIAAAVAAYDSANPEARLPRSTVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLAEAGFLSRTPGSGVVPDTYQLHLPPVQQ
Ga0308176_108628802	3300031996	Soil	MPIDPHRRDEIAAAVAAYDSANPQSPLPRNAVPLLAAMFPIEDVCQRSLQDIAAEGFDRKRLAANLRRLMVAGFLSRTSGSGVVPDTYRLHLSPVQQ
Ga0310906_109801771	3300032013	Soil	LPIDQRRRDEITAAVAAYDSANPLSPLPRNAVPLLAAMFPIEDVCQRSLDEIATQGFNRKNLTAPLRRLMMAGFLSRVSGSGR
Ga0310890_115579191	3300032075	Soil	MPIDPRRRHEIAIAVVAYDPPLPRTAARLLAAMFPVEDLCQQSLDDIATGGFSRKSLPATLRRLVAAGFVSRTPGSGVVPATYRLHLPPRVQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069977

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences