Metagenome / Metatranscriptome Family F070373

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070373
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	49 residues
Representative Sequence	FVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK
Number of Associated Samples	76
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.37 %
% of genes from short scaffolds (< 2000 bps)	95.93 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.350 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.455 % of family members)
Environment Ontology (ENVO)	Unclassified (46.341 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.61% β-sheet: 0.00% Coil/Unstructured: 69.39%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF02657	SufE	11.38
PF01609	DDE_Tnp_1	4.88
PF13827	DUF4189	4.88
PF04392	ABC_sub_bind	4.07
PF03734	YkuD	4.07
PF13560	HTH_31	2.44
PF05598	DUF772	1.63
PF05443	ROS_MUCR	1.63
PF06983	3-dmu-9_3-mt	0.81
PF00011	HSP20	0.81
PF08546	ApbA_C	0.81
PF06472	ABC_membrane_2	0.81
PF00589	Phage_integrase	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2166	Sulfur transfer protein SufE, Fe-S cluster assembly	Posttranslational modification, protein turnover, chaperones [O]	11.38
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	4.88
COG3293	Transposase	Mobilome: prophages, transposons [X]	4.88
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	4.88
COG5421	Transposase	Mobilome: prophages, transposons [X]	4.88
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	4.88
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	4.88
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	4.07
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.07
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	4.07
COG4957	Predicted transcriptional regulator	Transcription [K]	1.63
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.81
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.81
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.35 %
Unclassified	root	N/A	40.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.35 %
Unclassified	root	N/A	40.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.35 %
Unclassified	root	N/A	40.65 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.15 %
Unclassified	root	N/A	40.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.90 %
Unclassified	root	N/A	40.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.13 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.25 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.25 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.13 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.25 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.25 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.13 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.25 %
Hyphomicrobium denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	1.63 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	1.63 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.13 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.25 %
Hyphomicrobium sp. 99	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	1.63 %
Hyphomicrobium denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	1.63 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig12466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	1475	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1053788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	618	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1051707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	735	Open in IMG/M
3300000956\|JGI10216J12902_103307714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300004268\|Ga0066398_10189872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	537	Open in IMG/M
3300005332\|Ga0066388_100437530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1950	Open in IMG/M
3300005332\|Ga0066388_101746354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300005332\|Ga0066388_102109499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1014	Open in IMG/M
3300005332\|Ga0066388_102756803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	897	Open in IMG/M
3300005332\|Ga0066388_103413523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	811	Open in IMG/M
3300005436\|Ga0070713_100823526	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300005437\|Ga0070710_10775457	Not Available	683	Open in IMG/M
3300005713\|Ga0066905_100472533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300005713\|Ga0066905_100496906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1013	Open in IMG/M
3300005713\|Ga0066905_101509153	Not Available	612	Open in IMG/M
3300005764\|Ga0066903_101567097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	1247	Open in IMG/M
3300005764\|Ga0066903_105146824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300005764\|Ga0066903_106174050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	626	Open in IMG/M
3300005764\|Ga0066903_106323053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300005764\|Ga0066903_107460518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300005764\|Ga0066903_108049148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	540	Open in IMG/M
3300005764\|Ga0066903_108182375	Not Available	535	Open in IMG/M
3300005764\|Ga0066903_108474535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	524	Open in IMG/M
3300006175\|Ga0070712_101444424	Not Available	601	Open in IMG/M
3300009792\|Ga0126374_10077842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1801	Open in IMG/M
3300010046\|Ga0126384_10163934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1724	Open in IMG/M
3300010046\|Ga0126384_10539472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300010046\|Ga0126384_11150749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	713	Open in IMG/M
3300010048\|Ga0126373_11817447	Not Available	673	Open in IMG/M
3300010048\|Ga0126373_12676090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300010358\|Ga0126370_10203454	Not Available	1498	Open in IMG/M
3300010358\|Ga0126370_11459151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300010359\|Ga0126376_12922406	Not Available	527	Open in IMG/M
3300010360\|Ga0126372_10617746	Not Available	1043	Open in IMG/M
3300010360\|Ga0126372_11848054	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010361\|Ga0126378_11134318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	882	Open in IMG/M
3300010361\|Ga0126378_11844878	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300010361\|Ga0126378_12229297	Not Available	625	Open in IMG/M
3300010362\|Ga0126377_10855902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	970	Open in IMG/M
3300010362\|Ga0126377_12303795	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300010366\|Ga0126379_11128588	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300010366\|Ga0126379_11904158	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300010366\|Ga0126379_13050423	Not Available	560	Open in IMG/M
3300010376\|Ga0126381_102866249	Not Available	687	Open in IMG/M
3300010376\|Ga0126381_104116168	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300010376\|Ga0126381_104668922	Not Available	528	Open in IMG/M
3300010398\|Ga0126383_12598153	Not Available	590	Open in IMG/M
3300010398\|Ga0126383_13012853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300012198\|Ga0137364_10849445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	690	Open in IMG/M
3300012212\|Ga0150985_117079577	Not Available	976	Open in IMG/M
3300012927\|Ga0137416_10990098	Not Available	751	Open in IMG/M
3300012948\|Ga0126375_11552218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	568	Open in IMG/M
3300012960\|Ga0164301_11490013	Not Available	557	Open in IMG/M
3300012987\|Ga0164307_10053285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2334	Open in IMG/M
3300012989\|Ga0164305_11255405	Not Available	645	Open in IMG/M
3300015371\|Ga0132258_10915139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2215	Open in IMG/M
3300016270\|Ga0182036_10644638	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300016270\|Ga0182036_10831150	Not Available	754	Open in IMG/M
3300016270\|Ga0182036_11751664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300016270\|Ga0182036_11773415	Not Available	522	Open in IMG/M
3300016294\|Ga0182041_10963144	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300016319\|Ga0182033_10859703	Not Available	802	Open in IMG/M
3300016319\|Ga0182033_11420574	Not Available	625	Open in IMG/M
3300016341\|Ga0182035_10423089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1124	Open in IMG/M
3300016341\|Ga0182035_10636638	Not Available	924	Open in IMG/M
3300016341\|Ga0182035_10642736	Not Available	920	Open in IMG/M
3300016341\|Ga0182035_10809760	Not Available	822	Open in IMG/M
3300016341\|Ga0182035_11504133	Not Available	606	Open in IMG/M
3300016357\|Ga0182032_11904385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300016371\|Ga0182034_11330985	Not Available	627	Open in IMG/M
3300016371\|Ga0182034_11372877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300016371\|Ga0182034_11801528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	539	Open in IMG/M
3300016387\|Ga0182040_11060305	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300016404\|Ga0182037_11512806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300016404\|Ga0182037_11758476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300016422\|Ga0182039_10824813	Not Available	824	Open in IMG/M
3300016422\|Ga0182039_11665979	Not Available	583	Open in IMG/M
3300016445\|Ga0182038_10053088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2719	Open in IMG/M
3300016445\|Ga0182038_10540969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	999	Open in IMG/M
3300021361\|Ga0213872_10332641	Not Available	626	Open in IMG/M
3300021441\|Ga0213871_10300212	Not Available	518	Open in IMG/M
3300021444\|Ga0213878_10234658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300021478\|Ga0210402_10240244	Not Available	1671	Open in IMG/M
3300021560\|Ga0126371_10642927	All Organisms → cellular organisms → Bacteria → Proteobacteria	1209	Open in IMG/M
3300021560\|Ga0126371_10969223	Not Available	993	Open in IMG/M
3300027663\|Ga0208990_1106553	Not Available	773	Open in IMG/M
3300028768\|Ga0307280_10211495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300030997\|Ga0073997_11771952	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300031231\|Ga0170824_121157567	Not Available	702	Open in IMG/M
3300031549\|Ga0318571_10107094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	922	Open in IMG/M
3300031573\|Ga0310915_10120079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1794	Open in IMG/M
3300031679\|Ga0318561_10091692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1586	Open in IMG/M
3300031680\|Ga0318574_10196232	Not Available	1158	Open in IMG/M
3300031719\|Ga0306917_10723793	Not Available	781	Open in IMG/M
3300031744\|Ga0306918_10574621	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300031744\|Ga0306918_10637779	Not Available	835	Open in IMG/M
3300031770\|Ga0318521_10067568	All Organisms → cellular organisms → Bacteria → Proteobacteria	1894	Open in IMG/M
3300031780\|Ga0318508_1005252	All Organisms → cellular organisms → Bacteria → Proteobacteria	2689	Open in IMG/M
3300031781\|Ga0318547_10761939	Not Available	602	Open in IMG/M
3300031796\|Ga0318576_10241093	Not Available	852	Open in IMG/M
3300031797\|Ga0318550_10157525	Not Available	1092	Open in IMG/M
3300031819\|Ga0318568_10952811	Not Available	530	Open in IMG/M
3300031832\|Ga0318499_10121559	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300031833\|Ga0310917_10645586	Not Available	718	Open in IMG/M
3300031890\|Ga0306925_10890932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	916	Open in IMG/M
3300031910\|Ga0306923_11289212	Not Available	775	Open in IMG/M
3300031942\|Ga0310916_10191602	Not Available	1707	Open in IMG/M
3300031945\|Ga0310913_10790852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300031946\|Ga0310910_10300447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1263	Open in IMG/M
3300031946\|Ga0310910_10647503	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300031954\|Ga0306926_11559646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300032001\|Ga0306922_10993403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300032001\|Ga0306922_11228691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300032059\|Ga0318533_10629176	Not Available	787	Open in IMG/M
3300032059\|Ga0318533_11157380	Not Available	566	Open in IMG/M
3300032060\|Ga0318505_10333507	Not Available	716	Open in IMG/M
3300032076\|Ga0306924_10240656	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300032076\|Ga0306924_11550154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300032094\|Ga0318540_10058138	Not Available	1751	Open in IMG/M
3300032094\|Ga0318540_10227189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	901	Open in IMG/M
3300032261\|Ga0306920_102966879	Not Available	641	Open in IMG/M
3300032261\|Ga0306920_103971157	Not Available	537	Open in IMG/M
3300033289\|Ga0310914_11149498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.94%
Host-Associated	Host-Associated	3.25%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.94%
Plants	Host-Associated → Plants	3.25%
Modeled	Engineered → Modeled	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.63%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.86%
Loam	Environmental → Terrestrial → Soil → Loam	17.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.63%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.44%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.63%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0466.00001260	2166559005	Simulated	VPFSRDLKPDLGRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLSDYQLPTAPNAVAQYDANARR
AF_2010_repII_A01DRAFT_10537882	3300000580	Forest Soil	AFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK*
AF_2010_repII_A100DRAFT_10517071	3300000655	Forest Soil	VAFSRELKPDLGRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQDDASARK*
JGI10216J12902_1033077142	3300000956	Soil	RDYVTHAWVDYPIKDIISRLGDYKLPTAPNAVVQYDASARR*
Ga0066398_101898722	3300004268	Tropical Forest Soil	LKPDLGRGGAVFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPIAPNAVVQYDASARR
Ga0066388_1004375303	3300005332	Tropical Forest Soil	RELKPDLGRGGAVFVSADVPHRDYVTHAWVDFPIKDIVSRLGDYQLPTAPNAVAQDDASARR*
Ga0066388_1017463541	3300005332	Tropical Forest Soil	GRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK*
Ga0066388_1021094991	3300005332	Tropical Forest Soil	AVFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVVQYDASARR*
Ga0066388_1027568031	3300005332	Tropical Forest Soil	DLGRGGAVFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTTPNAVVDASARR*
Ga0066388_1034135231	3300005332	Tropical Forest Soil	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPIAPNAVVQYDASARR*
Ga0070713_1008235261	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	HRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARN*
Ga0070710_107754571	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVVQSDASAPR*
Ga0066905_1004725333	3300005713	Tropical Forest Soil	RDYVTHAWADLPIKDIVTRLADYQLPTPPSTVAQYDPNGRK*
Ga0066905_1004969063	3300005713	Tropical Forest Soil	RGGAVFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVVQYDASARR*
Ga0066905_1015091532	3300005713	Tropical Forest Soil	HAWVDYPIKDVVSRLGDYQLPTAPNAVAQYDANARK*
Ga0066903_1015670971	3300005764	Tropical Forest Soil	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK*
Ga0066903_1051468242	3300005764	Tropical Forest Soil	RGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPNAVAQDDASARK*
Ga0066903_1061740501	3300005764	Tropical Forest Soil	GGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAAAQYDASARK*
Ga0066903_1063230532	3300005764	Tropical Forest Soil	VPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQYDANARK*
Ga0066903_1074605182	3300005764	Tropical Forest Soil	GGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASVRK*
Ga0066903_1080491481	3300005764	Tropical Forest Soil	FSRELKPDLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASARK*
Ga0066903_1081823751	3300005764	Tropical Forest Soil	DYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK*
Ga0066903_1084745351	3300005764	Tropical Forest Soil	PDLGRGGAVFVSADVPHRDYVTHAWVEHPIKDIVSRLGDYQLPTAPNTVVQYDASARR*
Ga0070712_1014444241	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	HRDYVTHAWVDYPIKDIVSRLGDYQLPNAPNAVAQASARK*
Ga0126374_100778423	3300009792	Tropical Forest Soil	AFSRELKPDLGRGGAVFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPIAPNAVVQYDASARR*
Ga0126384_101639343	3300010046	Tropical Forest Soil	SADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPIAPNAVVQYDASARR*
Ga0126384_105394722	3300010046	Tropical Forest Soil	YVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQDDASARK*
Ga0126384_111507493	3300010046	Tropical Forest Soil	SADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPIAPNAVVQYNASARR*
Ga0126373_118174471	3300010048	Tropical Forest Soil	DVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVVQYDASARK*
Ga0126373_126760902	3300010048	Tropical Forest Soil	VTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASARK*
Ga0126370_102034541	3300010358	Tropical Forest Soil	LGHGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQYDASARK*
Ga0126370_114591511	3300010358	Tropical Forest Soil	WVDYPIKDIVRRLGDYQLPTAPNAVAQDDASARK*
Ga0126376_129224062	3300010359	Tropical Forest Soil	GGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQDDASARK*
Ga0126372_106177462	3300010360	Tropical Forest Soil	PDLGRGGAVFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK*
Ga0126372_118480542	3300010360	Tropical Forest Soil	VFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARR*
Ga0126378_111343181	3300010361	Tropical Forest Soil	FVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASARK*
Ga0126378_118448781	3300010361	Tropical Forest Soil	AAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVSQYDPSARK*
Ga0126378_122292972	3300010361	Tropical Forest Soil	FSRELKPDLGRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK*
Ga0126377_108559021	3300010362	Tropical Forest Soil	RDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVVQYDASARR*
Ga0126377_123037952	3300010362	Tropical Forest Soil	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTTPNAVVKYDASARR*
Ga0126379_111285881	3300010366	Tropical Forest Soil	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVVQYDASARR*
Ga0126379_119041581	3300010366	Tropical Forest Soil	LGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQDDASARK*
Ga0126379_130504231	3300010366	Tropical Forest Soil	AFSRELKPDLGRGGAAFVSADVPHRDYVTHAWVDYPIKYIVRRLGDYQLPTSPSAVSQYDASARK*
Ga0126381_1028662493	3300010376	Tropical Forest Soil	PHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQYDASARK*
Ga0126381_1041161681	3300010376	Tropical Forest Soil	DLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQDDASARK*
Ga0126381_1046689221	3300010376	Tropical Forest Soil	LGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQFDASAQK*
Ga0126383_125981531	3300010398	Tropical Forest Soil	VPHRDYVTHAWVDYPIKDIVSRLGDYKLPTSPSAVAEFGASARK*
Ga0126383_130128532	3300010398	Tropical Forest Soil	PDLGRGGAVFVSADVPHRDYVTHAWVDFPIKDIVSRLGDYQLPTAPNAVAQDDASARR*
Ga0137364_108494452	3300012198	Vadose Zone Soil	AWVDYPIKDIVSRLGEYQLPTAPNTVVQYDASARR*
Ga0150985_1170795771	3300012212	Avena Fatua Rhizosphere	FSRELKPDLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVVKLRDYQLPSTSNAVAQYDSSAQK*
Ga0137416_109900981	3300012927	Vadose Zone Soil	RDYVTHAWVDYPIKDIVGKVRDYQLPSASNAVAQYDASQK*
Ga0126375_115522181	3300012948	Tropical Forest Soil	VTHAWVDYRIKDIVSRLGDYQLPTTPNAVVQYDASARR*
Ga0164301_114900132	3300012960	Soil	HAWVDYPIKDIVGKLRDYQLPSASNAVAQYDASAQK*
Ga0164307_100532854	3300012987	Soil	GVAFVSADVPHRDYVTHAWVDYPIKDIVSRLSDYQLPTTPNAVAQYDANARR*
Ga0164305_112554051	3300012989	Soil	HAWVDYPIKDIVGKLRDYQLPSASNAVAQYDASQK*
Ga0132258_109151394	3300015371	Arabidopsis Rhizosphere	VPHRDYVTHAWVDYPIKDIVSRLSDYQLPTTPNAVAQYDANARR*
Ga0182036_106446382	3300016270	Soil	AFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0182036_108311502	3300016270	Soil	ADVPHRDYVTHAWVDYPIKDVVSRLGDYQLPTAPNAVAQYDANARK
Ga0182036_117516641	3300016270	Soil	AWVDYPIKDIVSRLGDYQLPTSPSAVAQYNASARK
Ga0182036_117734151	3300016270	Soil	PHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0182041_109631441	3300016294	Soil	DVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQYDASARK
Ga0182033_108597032	3300016319	Soil	HRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0182033_114205741	3300016319	Soil	AFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0182035_104230893	3300016341	Soil	GAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVARK
Ga0182035_106366382	3300016341	Soil	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVVQYDASARR
Ga0182035_106427363	3300016341	Soil	FVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0182035_108097602	3300016341	Soil	FVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0182035_115041331	3300016341	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQYDASARK
Ga0182032_119043852	3300016357	Soil	AFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASARK
Ga0182034_113309851	3300016371	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQYDARARK
Ga0182034_113728771	3300016371	Soil	ELKPDLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASVR
Ga0182034_118015282	3300016371	Soil	VPFSRELKPDLGRGGVAFISADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNTVAQYDANARK
Ga0182040_110603051	3300016387	Soil	PHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0182037_115128062	3300016404	Soil	VSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQYNASARK
Ga0182037_117584761	3300016404	Soil	SADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASVRK
Ga0182039_108248132	3300016422	Soil	GGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0182039_116659792	3300016422	Soil	YVTHAWVDYPIKDVISRLADYQLPMRPANVAQYDPAGRR
Ga0182038_100530884	3300016445	Soil	VAFISADVPHRDYVTHAWVDYPIKDVVSRLGDYQLPTAPNAVAQFDGNARK
Ga0182038_105409691	3300016445	Soil	AWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASVRR
Ga0213872_103326412	3300021361	Rhizosphere	AFVEADVPHRDYVTHAWVDYPIKDVISRLADYQLPTRPSTVAQYDPAGRR
Ga0213871_103002121	3300021441	Rhizosphere	VTHAWADYPIKDVISRLADYQLPDRPSTVAQYDPNGRK
Ga0213878_102346582	3300021444	Bulk Soil	VPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDASARK
Ga0210402_102402441	3300021478	Soil	FSRELKPDLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0126371_106429271	3300021560	Tropical Forest Soil	ELKPDLGRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASAR
Ga0126371_109692232	3300021560	Tropical Forest Soil	GGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQDDASARK
Ga0208990_11065532	3300027663	Forest Soil	DVPHRDYVTHAWVDYPIKDIVGKVRDYQLPSASNAVAQYDASAQK
Ga0307280_102114953	3300028768	Soil	LGRGGVAFVSADVPHRDYVTHAWVDYPIKDIVGRLGDYQLPTAPNAVVQYDASARK
Ga0073997_117719521	3300030997	Soil	AFVSADVPHRDYVTHAWVDYPIKDIVGKLRDYQLPSASNAVAQYDASQK
Ga0170824_1211575672	3300031231	Forest Soil	RDYVTHAWVDYPIKDIVSRLSDYQLPTAPNAVAQYDANARR
Ga0318571_101070941	3300031549	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQDDASARK
Ga0310915_101200794	3300031573	Soil	DLGRGGVAFISADVPHRDYVTHAWVDYPIKDVVSRLGDYQLPTAPNAVAQYDGNARK
Ga0318561_100916921	3300031679	Soil	HRDYVTHAWVDYPIKDIVSRLGDYQLPTDPNAIAQYDASARK
Ga0318574_101962321	3300031680	Soil	ADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0306917_107237932	3300031719	Soil	RDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0306918_105746211	3300031744	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQYDASARK
Ga0306918_106377791	3300031744	Soil	HRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0318521_100675685	3300031770	Soil	GVAFVSADVRHRDYVTHAWVDYPIKDIVSRLGDYQLPTDPNAIAQYDASARK
Ga0318508_10052521	3300031780	Soil	GRGGVAFVSADVRHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK
Ga0318547_107619391	3300031781	Soil	VTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0318576_102410931	3300031796	Soil	AWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0318550_101575253	3300031797	Soil	FVSADVRHRDYVTHAWVDYPIKDIVSRLGDYQLPTDPNAIAQYDASARK
Ga0318568_109528113	3300031819	Soil	YVTHAWVDYPIKDIVSRLGDYQLPTDPNAIAQYDASARK
Ga0318499_101215591	3300031832	Soil	YVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK
Ga0310917_106455861	3300031833	Soil	ATFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAGAQYDASARK
Ga0306925_108909321	3300031890	Soil	DVPHRDYVTHAWVDYPIKDVVSRLGDYQLPTAPNAVAQYDGNARK
Ga0306923_112892121	3300031910	Soil	VSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQASARK
Ga0310916_101916021	3300031942	Soil	DLGRGGVAFISADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAQYDGNARK
Ga0310913_107908521	3300031945	Soil	VPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVGQYDASARK
Ga0310910_103004473	3300031946	Soil	GGVAFISADVPHRDYVTHAWVDYPIKDVVSRLGDYQLPTAPNAVAQYDGNARK
Ga0310910_106475031	3300031946	Soil	DLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQYDASARK
Ga0306926_115596462	3300031954	Soil	DVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVGQYDASARK
Ga0306922_109934031	3300032001	Soil	GAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASVRK
Ga0306922_112286912	3300032001	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVGQYDASARK
Ga0318533_106291761	3300032059	Soil	VSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVAEHDPSARK
Ga0318533_111573801	3300032059	Soil	AWVDYPIKDIVSRLGDYQLPTAPNAVAEHDASARK
Ga0318505_103335071	3300032060	Soil	RELKPDLGRGGAAFVSADVPHRDYVTHAWVADPIKDIVSRLGDYQLPTSPSAVAQHDASARK
Ga0306924_102406563	3300032076	Soil	ELKADLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYRLPTSPSAVAQYDASAR
Ga0306924_115501542	3300032076	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASVRK
Ga0318540_100581384	3300032094	Soil	LGRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTDPNAIAQYDASARK
Ga0318540_102271892	3300032094	Soil	FSRELKPDLGRGGAAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTSPSAVAQHDASVRK
Ga0306920_1029668792	3300032261	Soil	GRGGVAFVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK
Ga0306920_1039711572	3300032261	Soil	FVSADVPHRDYVTHAWVDYPIKDIVSRLGDYQLPTAPNAVVQYDASARK
Ga0310914_111494981	3300033289	Soil	GRGGAAFVSADVPHRDYVTHAWVDYPIKDIVRRLGDYQLPTSPSAVAQYDASARK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070373

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences