NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F070403

Metagenome / Metatranscriptome Family F070403

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070403
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 37 residues
Representative Sequence PIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Number of Associated Samples 91
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.81 %
% of genes near scaffold ends (potentially truncated) 96.75 %
% of genes from short scaffolds (< 2000 bps) 93.50 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(21.138 % of family members)
Environment Ontology (ENVO) Unclassified
(38.211 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.789 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46
1GPIPI_03934400
2JGI1027J12803_1012077011
3Ga0066388_1047875232
4Ga0066388_1080318141
5Ga0066706_103790771
6Ga0066905_1003107972
7Ga0066905_1003128542
8Ga0066905_1015794281
9Ga0066905_1021176542
10Ga0066903_1010493951
11Ga0066903_1016493524
12Ga0066903_1019757992
13Ga0066903_1047680901
14Ga0066903_1060371072
15Ga0066903_1063028012
16Ga0066903_1072749302
17Ga0066696_104282651
18Ga0070712_1003595963
19Ga0074053_119321892
20Ga0066658_101874971
21Ga0066659_111942421
22Ga0075431_1006998762
23Ga0075434_1011884231
24Ga0099793_107267661
25Ga0099794_103886791
26Ga0075418_119728551
27Ga0116218_10994523
28Ga0126374_101805621
29Ga0126384_109267151
30Ga0126384_122239081
31Ga0126373_114545141
32Ga0126370_101335453
33Ga0126370_103423693
34Ga0126372_108815043
35Ga0126377_102125171
36Ga0126379_100319391
37Ga0126379_111069772
38Ga0126381_1013695431
39Ga0126383_112957661
40Ga0126383_116606431
41Ga0137383_106037411
42Ga0137363_105702151
43Ga0137363_110408342
44Ga0137362_103425592
45Ga0137362_104878582
46Ga0137378_111499451
47Ga0137377_118525701
48Ga0137369_102310471
49Ga0137384_103490771
50Ga0137360_102162871
51Ga0137361_119652501
52Ga0126375_106851091
53Ga0126375_108509821
54Ga0164303_104248611
55Ga0126369_129407231
56Ga0164306_115011201
57Ga0134073_103447821
58Ga0132256_1006832102
59Ga0132257_1043493661
60Ga0182036_113321041
61Ga0182036_116779861
62Ga0182041_103134613
63Ga0182033_107742392
64Ga0182035_101677283
65Ga0182032_108375992
66Ga0182032_110798731
67Ga0182034_111673841
68Ga0182034_118690612
69Ga0182040_111780042
70Ga0182040_116770561
71Ga0182037_104343834
72Ga0066669_102329031
73Ga0210406_109497852
74Ga0213878_101167892
75Ga0210410_116597182
76Ga0207685_106860992
77Ga0207693_101857503
78Ga0207700_111355312
79Ga0209240_11461402
80Ga0257168_11444861
81Ga0209474_106300741
82Ga0209648_100647181
83Ga0209106_11208462
84Ga0209465_105477042
85Ga0209415_100716882
86Ga0307311_100579882
87Ga0307288_104597381
88Ga0308194_102857502
89Ga0318516_108718251
90Ga0318541_102567201
91Ga0318538_106501581
92Ga0318538_106647362
93Ga0318571_102085062
94Ga0306917_101841643
95Ga0306917_101846241
96Ga0318543_103285901
97Ga0318550_105985452
98Ga0318523_101769041
99Ga0310917_100397177
100Ga0310917_101202703
101Ga0310917_104458132
102Ga0318495_100990581
103Ga0306925_101062281
104Ga0306925_101672541
105Ga0306925_111040821
106Ga0318522_101999371
107Ga0318551_102998422
108Ga0306921_100222101
109Ga0306921_103959221
110Ga0310912_110311961
111Ga0310916_103299263
112Ga0310910_102129911
113Ga0310910_105408104
114Ga0310909_104513981
115Ga0318559_105999791
116Ga0318504_103558182
117Ga0318510_103714201
118Ga0318524_107952062
119Ga0306924_103666843
120Ga0306924_104216822
121Ga0306924_105551041
122Ga0306924_108628182
123Ga0306920_1007710824
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 45.95%    β-sheet: 16.22%    Coil/Unstructured: 37.84%
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5101520253035PIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRESequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Grasslands Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Populus Rhizosphere
Arabidopsis Rhizosphere
4.1%10.6%13.0%5.7%21.1%19.5%11.4%3.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_039344002088090014SoilIEQSPRFYMAVNLKTAASLGVFLSDAFIARANGVRE
JGI1027J12803_10120770113300000955SoilEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVIE*
Ga0066388_10478752323300005332Tropical Forest SoilMLNSYLEPTPIEQSPRFYMAVNLKTAASLGVSLSDVFIARAN
Ga0066388_10803181413300005332Tropical Forest SoilDMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0066706_1037907713300005598SoilIEQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE*
Ga0066905_10031079723300005713Tropical Forest SoilIEQSPRFYMAVNLKAAAALGVSLSDVFVARANEVIE*
Ga0066905_10031285423300005713Tropical Forest SoilSDMPIEQSPRFYMAVNLKTAASLGISLSDVFIARANEVRE*
Ga0066905_10157942813300005713Tropical Forest SoilSDMPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0066905_10211765423300005713Tropical Forest SoilMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0066903_10104939513300005764Tropical Forest SoilQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE*
Ga0066903_10164935243300005764Tropical Forest SoilIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0066903_10197579923300005764Tropical Forest SoilDIPIEQSAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0066903_10476809013300005764Tropical Forest SoilMPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0066903_10603710723300005764Tropical Forest SoilPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE*
Ga0066903_10630280123300005764Tropical Forest SoilPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE*
Ga0066903_10727493023300005764Tropical Forest SoilDMPIEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE*
Ga0066696_1042826513300006032SoilEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE*
Ga0070712_10035959633300006175Corn, Switchgrass And Miscanthus RhizosphereIEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE*
Ga0074053_1193218923300006575SoilQSLRFHMAVNLKTAASLGISLSDSFVARANEVRE*
Ga0066658_1018749713300006794SoilPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE*
Ga0066659_1119424213300006797SoilDMPIEQSPRFYMAVNLKTAALLGVSLSDVFVARANEVRE*
Ga0075431_10069987623300006847Populus RhizosphereSDMPIEQSPRFYMAVNLKTAASLGVALSDVFVARANEVRE*
Ga0075434_10118842313300006871Populus RhizosphereEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE*
Ga0099793_1072676613300007258Vadose Zone SoilQSPRFYMAVNLKAAASLGVSLSDVFIARANEVRE*
Ga0099794_1038867913300007265Vadose Zone SoilQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE*
Ga0075418_1197285513300009100Populus RhizosphereMPIEQSPRFYMAVNLKTAASLGVALPDVFVARANEVRE*
Ga0116218_109945233300009522Peatlands SoilMRPPHFDMAINLKTAASLGIVLPPSFTARTDEVIE*
Ga0126374_1018056213300009792Tropical Forest SoilQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0126384_1092671513300010046Tropical Forest SoilPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE*
Ga0126384_1222390813300010046Tropical Forest SoilIEQSPRFYMAVNLKTAALLGVSLSDAFIARANEVRE*
Ga0126373_1145451413300010048Tropical Forest SoilEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE*
Ga0126370_1013354533300010358Tropical Forest SoilSDMPIEQSPRFYMAVNLKTAAALGISLSDVFVARANEVRE*
Ga0126370_1034236933300010358Tropical Forest SoilIEQSPRFYMAVNLKTAALLGVSLSDVFIARADEVIE*
Ga0126372_1088150433300010360Tropical Forest SoilSDMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0126377_1021251713300010362Tropical Forest SoilQSPRFYMAVNLKAAAALGVSLSDVFVARANEVIE*
Ga0126379_1003193913300010366Tropical Forest SoilMPIEQSPRFYMAVNLKTAASLGVSLSDAFIARANEVIE*
Ga0126379_1110697723300010366Tropical Forest SoilQSPRFYMAVNLKTAAALGVSLSDVFIARANEVRE*
Ga0126381_10136954313300010376Tropical Forest SoilSDMPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE*
Ga0126383_1129576613300010398Tropical Forest SoilIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE*
Ga0126383_1166064313300010398Tropical Forest SoilKQSVRVHLAVNLKTAASLGVSLSDAFVARADEVIE*
Ga0137383_1060374113300012199Vadose Zone SoilDMPIEQSPRFYMAVNLKTAASLGISLSDVLVARANEVRE*
Ga0137363_1057021513300012202Vadose Zone SoilIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0137363_1104083423300012202Vadose Zone SoilPPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE*
Ga0137362_1034255923300012205Vadose Zone SoilPIEQSPRFYMAVNLKTAASLGVSLSGVFIARANEVRE*
Ga0137362_1048785823300012205Vadose Zone SoilEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0137378_1114994513300012210Vadose Zone SoilQSPRFYMAVNLKAAASLGVSLSDVFVARANEVRE*
Ga0137377_1185257013300012211Vadose Zone SoilDMPIEQSPRFYMAVNLKTAALLGIPLSDVFIARANEVRE*
Ga0137369_1023104713300012355Vadose Zone SoilIEQSPRFYMAVNLKTAGLLGVSLSDVFVARANEVRE*
Ga0137384_1034907713300012357Vadose Zone SoilSDMPIEQSPRCYMAVNLKTASLLGVSLSAVFIARANEVCE*
Ga0137360_1021628713300012361Vadose Zone SoilMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE*
Ga0137361_1196525013300012362Vadose Zone SoilMPIEQSPRFYMAVNLKTAASIGASLSDVFIARANEVIE*
Ga0126375_1068510913300012948Tropical Forest SoilKPSDTPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0126375_1085098213300012948Tropical Forest SoilEQSPRFYMAVNLKTAASIGVALPDVFVARANEVRE*
Ga0164303_1042486113300012957SoilEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE*
Ga0126369_1294072313300012971Tropical Forest SoilQSVRVHLAVNLKTAASLGVSLSDAFVARADEVIE*
Ga0164306_1150112013300012988SoilMPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE*
Ga0134073_1034478213300015356Grasslands SoilQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE*
Ga0132256_10068321023300015372Arabidopsis RhizosphereMPIEQSPRFYMAVNLKTAASLGISLSDAFIARANEVIE*
Ga0132257_10434936613300015373Arabidopsis RhizosphereQSSRFHMAVNLKTAASLGISLSDAFVARADEVRE*
Ga0182036_1133210413300016270SoilMPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVIE
Ga0182036_1167798613300016270SoilEQSPRFYMAVNLKTAASIGVALPDVFVARANEVRE
Ga0182041_1031346133300016294SoilSEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0182033_1077423923300016319SoilEQSPRFYMAVNLKTAAALGVSLSDVFVARANEVRE
Ga0182035_1016772833300016341SoilAKPSDMPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE
Ga0182032_1083759923300016357SoilSDMPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE
Ga0182032_1107987313300016357SoilKPSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0182034_1116738413300016371SoilMPIEQSPRFYMAINLKAAASLGVSLSDVFIARANEVRE
Ga0182034_1186906123300016371SoilDLRIAQSSRFHMAVNLKTAAALGITLSDRFVARADEVRE
Ga0182040_1117800423300016387SoilPIEQSPRFYMAVNLKAAASLGISLSDVFVAPANEVRE
Ga0182040_1167705613300016387SoilDMPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE
Ga0182037_1043438343300016404SoilDMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANGVRE
Ga0066669_1023290313300018482Grasslands SoilDMPIEQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE
Ga0210406_1094978523300021168SoilDMPIEQSPRFYMAVNLKTAASLGISLSDAFTARANEVRE
Ga0213878_1011678923300021444Bulk SoilEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0210410_1165971823300021479SoilMPIEQSPRFYMAVNLKTAASLGISLSDAFIARANEVRE
Ga0207685_1068609923300025905Corn, Switchgrass And Miscanthus RhizosphereSDMPIEQSPRFYMAVNLKGAASLGISLSDVFVARANEVRE
Ga0207693_1018575033300025915Corn, Switchgrass And Miscanthus RhizosphereSDMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE
Ga0207700_1113553123300025928Corn, Switchgrass And Miscanthus RhizosphereEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0209240_114614023300026304Grasslands SoilEQSPRFYMAVNLKTATSLGVSLSDVFIARANEVIE
Ga0257168_114448613300026514SoilEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0209474_1063007413300026550SoilPIEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE
Ga0209648_1006471813300026551Grasslands SoilIEQSPRFYMGVNLKMAASLGVSLSDVFIARANEVRE
Ga0209106_112084623300027616Forest SoilKPSEMPIEQSLRFHMAVNLNTAASLGVSLSDSFVARANEVRE
Ga0209465_1054770423300027874Tropical Forest SoilIEQSPRFYMAVNLKTAASIGVSLSDVFVARANEVRE
Ga0209415_1007168823300027905Peatlands SoilMRPPHFDMAINLKTAASLGIVLPPSFTARTDEVIE
Ga0307311_1005798823300028716SoilEMPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE
Ga0307288_1045973813300028778SoilPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE
Ga0308194_1028575023300031421SoilIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE
Ga0318516_1087182513300031543SoilDMPIEQSPRFYMGVNLKTAASLGVSLTDVFIARANEVIE
Ga0318541_1025672013300031545SoilIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0318538_1065015813300031546SoilSHMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE
Ga0318538_1066473623300031546SoilMPIEQSPRFYMAVNLKTAASLGISLSDVFIARANEVRE
Ga0318571_1020850623300031549SoilEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE
Ga0306917_1018416433300031719SoilEQSPRFYMAVNLKTAALLGVSLSDVFVARANEVRE
Ga0306917_1018462413300031719SoilPSEMPIEQSPRFHMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0318543_1032859013300031777SoilMPIEQSPRFYMAVNLKTAALLGISLSDVFVARANEVRE
Ga0318550_1059854523300031797SoilPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Ga0318523_1017690413300031798SoilMPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE
Ga0310917_1003971773300031833SoilDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0310917_1012027033300031833SoilEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE
Ga0310917_1044581323300031833SoilPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE
Ga0318495_1009905813300031860SoilSDMPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE
Ga0306925_1010622813300031890SoilIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Ga0306925_1016725413300031890SoilIEQSPRFYMSVNLKTAASLGVSLSDVFVARANEVIE
Ga0306925_1110408213300031890SoilEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE
Ga0318522_1019993713300031894SoilDMPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE
Ga0318551_1029984223300031896SoilSDMPIEQSPRFYMAINLKTAASLGVSLSDVFIARANEVRE
Ga0306921_1002221013300031912SoilPSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0306921_1039592213300031912SoilMPIEQSPRFHMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0310912_1103119613300031941SoilDMPIEQSPRFYMAVNLKTAAALGVSLSDVFVARANEVRE
Ga0310916_1032992633300031942SoilEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE
Ga0310910_1021299113300031946SoilMPIEQSPRFYMAVNLKTAASLGVALPDVFVARANEVRE
Ga0310910_1054081043300031946SoilIEQSPRFYMAINLKTAAFLGVSLSDVFIARANEVRE
Ga0310909_1045139813300031947SoilKPSDMPIEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE
Ga0318559_1059997913300032039SoilIEQSPRFYMAVNLKTAASLGISLSDVLVARANEVRE
Ga0318504_1035581823300032063SoilEQSPRFYMAVNLKTTASLGVSLSDVFIARANEVIE
Ga0318510_1037142013300032064SoilSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0318524_1079520623300032067SoilEMPIEQSPRFFMAVNLKAAALLGVSLSDVLVARANEVIE
Ga0306924_1036668433300032076SoilEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Ga0306924_1042168223300032076SoilPSEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0306924_1055510413300032076SoilEQSLRFHMAVNLKTAALLGVSLSDAFVARADEVIE
Ga0306924_1086281823300032076SoilSDMPIQQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE
Ga0306920_10077108243300032261SoilPPDTPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE


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