Basic Information | |
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Family ID | F070403 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 123 |
Average Sequence Length | 37 residues |
Representative Sequence | PIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 123 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.81 % |
% of genes near scaffold ends (potentially truncated) | 96.75 % |
% of genes from short scaffolds (< 2000 bps) | 93.50 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.138 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.211 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.789 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 45.95% β-sheet: 16.22% Coil/Unstructured: 37.84% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Tropical Forest Soil Bulk Soil Grasslands Soil Peatlands Soil Soil Grasslands Soil Soil Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Arabidopsis Rhizosphere Populus Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPIPI_03934400 | 2088090014 | Soil | IEQSPRFYMAVNLKTAASLGVFLSDAFIARANGVRE |
JGI1027J12803_1012077011 | 3300000955 | Soil | EQSPRFYMAVNLKTAASLGVSLSDVFVARANEVIE* |
Ga0066388_1047875232 | 3300005332 | Tropical Forest Soil | MLNSYLEPTPIEQSPRFYMAVNLKTAASLGVSLSDVFIARAN |
Ga0066388_1080318141 | 3300005332 | Tropical Forest Soil | DMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE* |
Ga0066706_103790771 | 3300005598 | Soil | IEQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE* |
Ga0066905_1003107972 | 3300005713 | Tropical Forest Soil | IEQSPRFYMAVNLKAAAALGVSLSDVFVARANEVIE* |
Ga0066905_1003128542 | 3300005713 | Tropical Forest Soil | SDMPIEQSPRFYMAVNLKTAASLGISLSDVFIARANEVRE* |
Ga0066905_1015794281 | 3300005713 | Tropical Forest Soil | SDMPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE* |
Ga0066905_1021176542 | 3300005713 | Tropical Forest Soil | MPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE* |
Ga0066903_1010493951 | 3300005764 | Tropical Forest Soil | QSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE* |
Ga0066903_1016493524 | 3300005764 | Tropical Forest Soil | IEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE* |
Ga0066903_1019757992 | 3300005764 | Tropical Forest Soil | DIPIEQSAVNLKTAALLGVSLSDVFIARANEVRE* |
Ga0066903_1047680901 | 3300005764 | Tropical Forest Soil | MPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE* |
Ga0066903_1060371072 | 3300005764 | Tropical Forest Soil | PIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE* |
Ga0066903_1063028012 | 3300005764 | Tropical Forest Soil | PIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE* |
Ga0066903_1072749302 | 3300005764 | Tropical Forest Soil | DMPIEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE* |
Ga0066696_104282651 | 3300006032 | Soil | EQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE* |
Ga0070712_1003595963 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | IEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE* |
Ga0074053_119321892 | 3300006575 | Soil | QSLRFHMAVNLKTAASLGISLSDSFVARANEVRE* |
Ga0066658_101874971 | 3300006794 | Soil | PIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE* |
Ga0066659_111942421 | 3300006797 | Soil | DMPIEQSPRFYMAVNLKTAALLGVSLSDVFVARANEVRE* |
Ga0075431_1006998762 | 3300006847 | Populus Rhizosphere | SDMPIEQSPRFYMAVNLKTAASLGVALSDVFVARANEVRE* |
Ga0075434_1011884231 | 3300006871 | Populus Rhizosphere | EQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE* |
Ga0099793_107267661 | 3300007258 | Vadose Zone Soil | QSPRFYMAVNLKAAASLGVSLSDVFIARANEVRE* |
Ga0099794_103886791 | 3300007265 | Vadose Zone Soil | QSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE* |
Ga0075418_119728551 | 3300009100 | Populus Rhizosphere | MPIEQSPRFYMAVNLKTAASLGVALPDVFVARANEVRE* |
Ga0116218_10994523 | 3300009522 | Peatlands Soil | MRPPHFDMAINLKTAASLGIVLPPSFTARTDEVIE* |
Ga0126374_101805621 | 3300009792 | Tropical Forest Soil | QSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE* |
Ga0126384_109267151 | 3300010046 | Tropical Forest Soil | PIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE* |
Ga0126384_122239081 | 3300010046 | Tropical Forest Soil | IEQSPRFYMAVNLKTAALLGVSLSDAFIARANEVRE* |
Ga0126373_114545141 | 3300010048 | Tropical Forest Soil | EQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE* |
Ga0126370_101335453 | 3300010358 | Tropical Forest Soil | SDMPIEQSPRFYMAVNLKTAAALGISLSDVFVARANEVRE* |
Ga0126370_103423693 | 3300010358 | Tropical Forest Soil | IEQSPRFYMAVNLKTAALLGVSLSDVFIARADEVIE* |
Ga0126372_108815043 | 3300010360 | Tropical Forest Soil | SDMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE* |
Ga0126377_102125171 | 3300010362 | Tropical Forest Soil | QSPRFYMAVNLKAAAALGVSLSDVFVARANEVIE* |
Ga0126379_100319391 | 3300010366 | Tropical Forest Soil | MPIEQSPRFYMAVNLKTAASLGVSLSDAFIARANEVIE* |
Ga0126379_111069772 | 3300010366 | Tropical Forest Soil | QSPRFYMAVNLKTAAALGVSLSDVFIARANEVRE* |
Ga0126381_1013695431 | 3300010376 | Tropical Forest Soil | SDMPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE* |
Ga0126383_112957661 | 3300010398 | Tropical Forest Soil | IEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE* |
Ga0126383_116606431 | 3300010398 | Tropical Forest Soil | KQSVRVHLAVNLKTAASLGVSLSDAFVARADEVIE* |
Ga0137383_106037411 | 3300012199 | Vadose Zone Soil | DMPIEQSPRFYMAVNLKTAASLGISLSDVLVARANEVRE* |
Ga0137363_105702151 | 3300012202 | Vadose Zone Soil | IEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE* |
Ga0137363_110408342 | 3300012202 | Vadose Zone Soil | PPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE* |
Ga0137362_103425592 | 3300012205 | Vadose Zone Soil | PIEQSPRFYMAVNLKTAASLGVSLSGVFIARANEVRE* |
Ga0137362_104878582 | 3300012205 | Vadose Zone Soil | EQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE* |
Ga0137378_111499451 | 3300012210 | Vadose Zone Soil | QSPRFYMAVNLKAAASLGVSLSDVFVARANEVRE* |
Ga0137377_118525701 | 3300012211 | Vadose Zone Soil | DMPIEQSPRFYMAVNLKTAALLGIPLSDVFIARANEVRE* |
Ga0137369_102310471 | 3300012355 | Vadose Zone Soil | IEQSPRFYMAVNLKTAGLLGVSLSDVFVARANEVRE* |
Ga0137384_103490771 | 3300012357 | Vadose Zone Soil | SDMPIEQSPRCYMAVNLKTASLLGVSLSAVFIARANEVCE* |
Ga0137360_102162871 | 3300012361 | Vadose Zone Soil | MPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE* |
Ga0137361_119652501 | 3300012362 | Vadose Zone Soil | MPIEQSPRFYMAVNLKTAASIGASLSDVFIARANEVIE* |
Ga0126375_106851091 | 3300012948 | Tropical Forest Soil | KPSDTPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE* |
Ga0126375_108509821 | 3300012948 | Tropical Forest Soil | EQSPRFYMAVNLKTAASIGVALPDVFVARANEVRE* |
Ga0164303_104248611 | 3300012957 | Soil | EQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE* |
Ga0126369_129407231 | 3300012971 | Tropical Forest Soil | QSVRVHLAVNLKTAASLGVSLSDAFVARADEVIE* |
Ga0164306_115011201 | 3300012988 | Soil | MPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE* |
Ga0134073_103447821 | 3300015356 | Grasslands Soil | QSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE* |
Ga0132256_1006832102 | 3300015372 | Arabidopsis Rhizosphere | MPIEQSPRFYMAVNLKTAASLGISLSDAFIARANEVIE* |
Ga0132257_1043493661 | 3300015373 | Arabidopsis Rhizosphere | QSSRFHMAVNLKTAASLGISLSDAFVARADEVRE* |
Ga0182036_113321041 | 3300016270 | Soil | MPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVIE |
Ga0182036_116779861 | 3300016270 | Soil | EQSPRFYMAVNLKTAASIGVALPDVFVARANEVRE |
Ga0182041_103134613 | 3300016294 | Soil | SEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE |
Ga0182033_107742392 | 3300016319 | Soil | EQSPRFYMAVNLKTAAALGVSLSDVFVARANEVRE |
Ga0182035_101677283 | 3300016341 | Soil | AKPSDMPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE |
Ga0182032_108375992 | 3300016357 | Soil | SDMPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE |
Ga0182032_110798731 | 3300016357 | Soil | KPSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE |
Ga0182034_111673841 | 3300016371 | Soil | MPIEQSPRFYMAINLKAAASLGVSLSDVFIARANEVRE |
Ga0182034_118690612 | 3300016371 | Soil | DLRIAQSSRFHMAVNLKTAAALGITLSDRFVARADEVRE |
Ga0182040_111780042 | 3300016387 | Soil | PIEQSPRFYMAVNLKAAASLGISLSDVFVAPANEVRE |
Ga0182040_116770561 | 3300016387 | Soil | DMPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE |
Ga0182037_104343834 | 3300016404 | Soil | DMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANGVRE |
Ga0066669_102329031 | 3300018482 | Grasslands Soil | DMPIEQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE |
Ga0210406_109497852 | 3300021168 | Soil | DMPIEQSPRFYMAVNLKTAASLGISLSDAFTARANEVRE |
Ga0213878_101167892 | 3300021444 | Bulk Soil | EQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE |
Ga0210410_116597182 | 3300021479 | Soil | MPIEQSPRFYMAVNLKTAASLGISLSDAFIARANEVRE |
Ga0207685_106860992 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | SDMPIEQSPRFYMAVNLKGAASLGISLSDVFVARANEVRE |
Ga0207693_101857503 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | SDMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE |
Ga0207700_111355312 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | EQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE |
Ga0209240_11461402 | 3300026304 | Grasslands Soil | EQSPRFYMAVNLKTATSLGVSLSDVFIARANEVIE |
Ga0257168_11444861 | 3300026514 | Soil | EMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE |
Ga0209474_106300741 | 3300026550 | Soil | PIEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE |
Ga0209648_100647181 | 3300026551 | Grasslands Soil | IEQSPRFYMGVNLKMAASLGVSLSDVFIARANEVRE |
Ga0209106_11208462 | 3300027616 | Forest Soil | KPSEMPIEQSLRFHMAVNLNTAASLGVSLSDSFVARANEVRE |
Ga0209465_105477042 | 3300027874 | Tropical Forest Soil | IEQSPRFYMAVNLKTAASIGVSLSDVFVARANEVRE |
Ga0209415_100716882 | 3300027905 | Peatlands Soil | MRPPHFDMAINLKTAASLGIVLPPSFTARTDEVIE |
Ga0307311_100579882 | 3300028716 | Soil | EMPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE |
Ga0307288_104597381 | 3300028778 | Soil | PIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE |
Ga0308194_102857502 | 3300031421 | Soil | IEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE |
Ga0318516_108718251 | 3300031543 | Soil | DMPIEQSPRFYMGVNLKTAASLGVSLTDVFIARANEVIE |
Ga0318541_102567201 | 3300031545 | Soil | IEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE |
Ga0318538_106501581 | 3300031546 | Soil | SHMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE |
Ga0318538_106647362 | 3300031546 | Soil | MPIEQSPRFYMAVNLKTAASLGISLSDVFIARANEVRE |
Ga0318571_102085062 | 3300031549 | Soil | EQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE |
Ga0306917_101841643 | 3300031719 | Soil | EQSPRFYMAVNLKTAALLGVSLSDVFVARANEVRE |
Ga0306917_101846241 | 3300031719 | Soil | PSEMPIEQSPRFHMAVNLKAAALLGVSLSDVFVARANEVIE |
Ga0318543_103285901 | 3300031777 | Soil | MPIEQSPRFYMAVNLKTAALLGISLSDVFVARANEVRE |
Ga0318550_105985452 | 3300031797 | Soil | PIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE |
Ga0318523_101769041 | 3300031798 | Soil | MPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE |
Ga0310917_100397177 | 3300031833 | Soil | DMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE |
Ga0310917_101202703 | 3300031833 | Soil | EQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE |
Ga0310917_104458132 | 3300031833 | Soil | PIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE |
Ga0318495_100990581 | 3300031860 | Soil | SDMPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE |
Ga0306925_101062281 | 3300031890 | Soil | IEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE |
Ga0306925_101672541 | 3300031890 | Soil | IEQSPRFYMSVNLKTAASLGVSLSDVFVARANEVIE |
Ga0306925_111040821 | 3300031890 | Soil | EQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE |
Ga0318522_101999371 | 3300031894 | Soil | DMPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE |
Ga0318551_102998422 | 3300031896 | Soil | SDMPIEQSPRFYMAINLKTAASLGVSLSDVFIARANEVRE |
Ga0306921_100222101 | 3300031912 | Soil | PSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE |
Ga0306921_103959221 | 3300031912 | Soil | MPIEQSPRFHMAVNLKAAALLGVSLSDVFVARANEVIE |
Ga0310912_110311961 | 3300031941 | Soil | DMPIEQSPRFYMAVNLKTAAALGVSLSDVFVARANEVRE |
Ga0310916_103299263 | 3300031942 | Soil | EQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE |
Ga0310910_102129911 | 3300031946 | Soil | MPIEQSPRFYMAVNLKTAASLGVALPDVFVARANEVRE |
Ga0310910_105408104 | 3300031946 | Soil | IEQSPRFYMAINLKTAAFLGVSLSDVFIARANEVRE |
Ga0310909_104513981 | 3300031947 | Soil | KPSDMPIEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE |
Ga0318559_105999791 | 3300032039 | Soil | IEQSPRFYMAVNLKTAASLGISLSDVLVARANEVRE |
Ga0318504_103558182 | 3300032063 | Soil | EQSPRFYMAVNLKTTASLGVSLSDVFIARANEVIE |
Ga0318510_103714201 | 3300032064 | Soil | SDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE |
Ga0318524_107952062 | 3300032067 | Soil | EMPIEQSPRFFMAVNLKAAALLGVSLSDVLVARANEVIE |
Ga0306924_103666843 | 3300032076 | Soil | EQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE |
Ga0306924_104216822 | 3300032076 | Soil | PSEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE |
Ga0306924_105551041 | 3300032076 | Soil | EQSLRFHMAVNLKTAALLGVSLSDAFVARADEVIE |
Ga0306924_108628182 | 3300032076 | Soil | SDMPIQQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE |
Ga0306920_1007710824 | 3300032261 | Soil | PPDTPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE |
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