Metagenome / Metatranscriptome Family F070437

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070437
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	56 residues
Representative Sequence	MITGLSTISLVLGTAVAYLASGYPERRAVMETVGGILLISGLGLMGYALEAVLGHP
Number of Associated Samples	75
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	17.50 %
% of genes near scaffold ends (potentially truncated)	24.39 %
% of genes from short scaffolds (< 2000 bps)	83.74 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.106 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.016 % of family members)
Environment Ontology (ENVO)	Unclassified (31.707 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.71% β-sheet: 0.00% Coil/Unstructured: 39.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00296	Bac_luciferase	3.25
PF07484	Collar	1.63
PF04392	ABC_sub_bind	1.63
PF06568	DUF1127	1.63
PF01583	APS_kinase	1.63
PF02518	HATPase_c	0.81
PF11755	DUF3311	0.81
PF01841	Transglut_core	0.81
PF05685	Uma2	0.81
PF13495	Phage_int_SAM_4	0.81
PF00072	Response_reg	0.81
PF00891	Methyltransf_2	0.81
PF00196	GerE	0.81
PF08544	GHMP_kinases_C	0.81
PF13592	HTH_33	0.81
PF00400	WD40	0.81
PF00152	tRNA-synt_2	0.81
PF01565	FAD_binding_4	0.81
PF01381	HTH_3	0.81
PF04828	GFA	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.25
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	1.63
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.63
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	1.63
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.81
COG0173	Aspartyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.81
COG1190	Lysyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.81
COG2269	Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)	Translation, ribosomal structure and biogenesis [J]	0.81
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.81
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
All Organisms	root	All Organisms	30.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
cellular organisms	root	All Organisms → cellular organisms	30.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.63 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.44 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.63 %
Pleomorphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae	0.81 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.81 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.44 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.63 %
Methylobrevis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Methylobrevis	0.81 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.81 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.63 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.63 %
Methylobrevis pamukkalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Methylobrevis → Methylobrevis pamukkalensis	0.81 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.81 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	1.63 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.81 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	0.81 %
Bradyrhizobium sp. CCGUVB4N	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB4N	0.81 %
Methylobrevis pamukkalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Methylobrevis → Methylobrevis pamukkalensis	0.81 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.11 %
Nocardioides sp. TF02-7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. TF02-7	1.63 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.81 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	0.81 %
Bradyrhizobium sp. CCGUVB4N	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB4N	0.81 %
Methylobrevis pamukkalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Methylobrevis → Methylobrevis pamukkalensis	0.81 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10472605	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300002245\|JGIcombinedJ26739_100149907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2203	Open in IMG/M
3300002245\|JGIcombinedJ26739_101118347	Not Available	675	Open in IMG/M
3300002245\|JGIcombinedJ26739_101520637	Not Available	565	Open in IMG/M
3300003505\|JGIcombinedJ51221_10044878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1661	Open in IMG/M
3300003505\|JGIcombinedJ51221_10092608	Not Available	1196	Open in IMG/M
3300004080\|Ga0062385_11029691	Not Available	554	Open in IMG/M
3300004082\|Ga0062384_100894738	Not Available	627	Open in IMG/M
3300004091\|Ga0062387_100979278	Not Available	646	Open in IMG/M
3300004092\|Ga0062389_101983088	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300005435\|Ga0070714_102291137	Not Available	525	Open in IMG/M
3300005538\|Ga0070731_10202732	Not Available	1317	Open in IMG/M
3300005538\|Ga0070731_10578488	Not Available	747	Open in IMG/M
3300005542\|Ga0070732_10381928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	849	Open in IMG/M
3300005542\|Ga0070732_10606323	Not Available	665	Open in IMG/M
3300005591\|Ga0070761_11111629	Not Available	503	Open in IMG/M
3300005602\|Ga0070762_10058823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB4N	2136	Open in IMG/M
3300005602\|Ga0070762_10600231	Not Available	731	Open in IMG/M
3300005921\|Ga0070766_10281711	Not Available	1063	Open in IMG/M
3300005921\|Ga0070766_10787529	Not Available	647	Open in IMG/M
3300006050\|Ga0075028_100934976	Not Available	536	Open in IMG/M
3300006059\|Ga0075017_100212731	Not Available	1402	Open in IMG/M
3300006059\|Ga0075017_100274035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300006176\|Ga0070765_100399357	Not Available	1283	Open in IMG/M
3300006176\|Ga0070765_100803319	Not Available	889	Open in IMG/M
3300006176\|Ga0070765_101320455	Not Available	680	Open in IMG/M
3300006176\|Ga0070765_102176595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	517	Open in IMG/M
3300006893\|Ga0073928_10109729	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300006893\|Ga0073928_10311731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1178	Open in IMG/M
3300009519\|Ga0116108_1107481	Not Available	841	Open in IMG/M
3300009521\|Ga0116222_1302272	Not Available	691	Open in IMG/M
3300009521\|Ga0116222_1365881	Not Available	626	Open in IMG/M
3300009700\|Ga0116217_10604068	Not Available	683	Open in IMG/M
3300009839\|Ga0116223_10307030	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300009839\|Ga0116223_10344089	Not Available	884	Open in IMG/M
3300010379\|Ga0136449_100101913	All Organisms → cellular organisms → Bacteria	5886	Open in IMG/M
3300010379\|Ga0136449_100444584	Not Available	2277	Open in IMG/M
3300010379\|Ga0136449_102499747	Not Available	741	Open in IMG/M
3300010379\|Ga0136449_103276739	Not Available	623	Open in IMG/M
3300010379\|Ga0136449_103786357	Not Available	569	Open in IMG/M
3300010379\|Ga0136449_104183307	Not Available	536	Open in IMG/M
3300011270\|Ga0137391_11204396	Not Available	605	Open in IMG/M
3300012363\|Ga0137390_11825121	Not Available	539	Open in IMG/M
3300014158\|Ga0181521_10326074	Not Available	778	Open in IMG/M
3300014200\|Ga0181526_10736634	Not Available	621	Open in IMG/M
3300014200\|Ga0181526_10915767	Not Available	551	Open in IMG/M
3300014489\|Ga0182018_10152396	Not Available	1320	Open in IMG/M
3300014501\|Ga0182024_12455504	Not Available	563	Open in IMG/M
3300017940\|Ga0187853_10151744	Not Available	1109	Open in IMG/M
3300020580\|Ga0210403_10322706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1265	Open in IMG/M
3300020581\|Ga0210399_10207519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1630	Open in IMG/M
3300020581\|Ga0210399_10751940	Not Available	799	Open in IMG/M
3300020582\|Ga0210395_10378665	Not Available	1065	Open in IMG/M
3300020582\|Ga0210395_11113964	Not Available	582	Open in IMG/M
3300020582\|Ga0210395_11235019	Not Available	548	Open in IMG/M
3300020583\|Ga0210401_10038641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4531	Open in IMG/M
3300021088\|Ga0210404_10047485	Not Available	2004	Open in IMG/M
3300021170\|Ga0210400_11436195	Not Available	549	Open in IMG/M
3300021180\|Ga0210396_10182428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1879	Open in IMG/M
3300021180\|Ga0210396_11302527	Not Available	604	Open in IMG/M
3300021181\|Ga0210388_10238423	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M
3300021181\|Ga0210388_11197776	Not Available	645	Open in IMG/M
3300021181\|Ga0210388_11376610	Not Available	593	Open in IMG/M
3300021401\|Ga0210393_10254260	Not Available	1425	Open in IMG/M
3300021401\|Ga0210393_10786536	Not Available	775	Open in IMG/M
3300021402\|Ga0210385_10015518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Methylobrevis → Methylobrevis pamukkalensis	4731	Open in IMG/M
3300021402\|Ga0210385_11213778	Not Available	579	Open in IMG/M
3300021403\|Ga0210397_10752550	Not Available	751	Open in IMG/M
3300021404\|Ga0210389_10128089	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300021406\|Ga0210386_11167933	Not Available	652	Open in IMG/M
3300021407\|Ga0210383_10125875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. TF02-7	2168	Open in IMG/M
3300021407\|Ga0210383_10915371	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300021420\|Ga0210394_10088110	All Organisms → cellular organisms → Bacteria → Proteobacteria	2681	Open in IMG/M
3300021420\|Ga0210394_10107327	All Organisms → cellular organisms → Bacteria → Proteobacteria	2416	Open in IMG/M
3300021420\|Ga0210394_10663162	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300021420\|Ga0210394_10704369	Not Available	885	Open in IMG/M
3300021474\|Ga0210390_10217112	Not Available	1619	Open in IMG/M
3300021474\|Ga0210390_10314508	Not Available	1326	Open in IMG/M
3300021474\|Ga0210390_10441102	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300021478\|Ga0210402_10139733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2201	Open in IMG/M
3300022532\|Ga0242655_10073860	Not Available	890	Open in IMG/M
3300022557\|Ga0212123_10203578	Not Available	1465	Open in IMG/M
3300022557\|Ga0212123_10369675	Not Available	973	Open in IMG/M
3300022731\|Ga0224563_1010124	Not Available	758	Open in IMG/M
3300024225\|Ga0224572_1053201	Not Available	753	Open in IMG/M
3300027109\|Ga0208603_1065957	Not Available	541	Open in IMG/M
3300027439\|Ga0209332_1014945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1521	Open in IMG/M
3300027605\|Ga0209329_1039997	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300027635\|Ga0209625_1038458	Not Available	1068	Open in IMG/M
3300027783\|Ga0209448_10137593	Not Available	816	Open in IMG/M
3300027842\|Ga0209580_10420191	Not Available	666	Open in IMG/M
3300027854\|Ga0209517_10501984	Not Available	661	Open in IMG/M
3300027869\|Ga0209579_10141488	Not Available	1281	Open in IMG/M
3300027879\|Ga0209169_10416433	Not Available	706	Open in IMG/M
3300027889\|Ga0209380_10124790	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300027889\|Ga0209380_10125356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. TF02-7	1495	Open in IMG/M
3300027898\|Ga0209067_10836470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	538	Open in IMG/M
3300027908\|Ga0209006_10022911	All Organisms → cellular organisms → Bacteria	5657	Open in IMG/M
3300027908\|Ga0209006_10291352	Not Available	1395	Open in IMG/M
3300027908\|Ga0209006_10458375	Not Available	1067	Open in IMG/M
3300028047\|Ga0209526_10092882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2124	Open in IMG/M
3300028047\|Ga0209526_10838153	Not Available	566	Open in IMG/M
3300030659\|Ga0316363_10222096	Not Available	779	Open in IMG/M
3300030707\|Ga0310038_10335654	Not Available	672	Open in IMG/M
3300030878\|Ga0265770_1102860	Not Available	583	Open in IMG/M
3300031057\|Ga0170834_101133817	Not Available	706	Open in IMG/M
3300031128\|Ga0170823_16687481	Not Available	621	Open in IMG/M
3300031231\|Ga0170824_105084876	Not Available	515	Open in IMG/M
3300031231\|Ga0170824_109745918	Not Available	544	Open in IMG/M
3300031231\|Ga0170824_113452376	Not Available	601	Open in IMG/M
3300031231\|Ga0170824_127258452	Not Available	821	Open in IMG/M
3300031446\|Ga0170820_12037073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300031446\|Ga0170820_13567199	Not Available	534	Open in IMG/M
3300031474\|Ga0170818_106226170	Not Available	636	Open in IMG/M
3300031708\|Ga0310686_109179511	Not Available	887	Open in IMG/M
3300031718\|Ga0307474_10827559	Not Available	732	Open in IMG/M
3300032160\|Ga0311301_10056380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8763	Open in IMG/M
3300032160\|Ga0311301_10059545	All Organisms → cellular organisms → Bacteria → Proteobacteria	8393	Open in IMG/M
3300032160\|Ga0311301_10285205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2667	Open in IMG/M
3300032160\|Ga0311301_12113391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.93%
Aquatic	Environmental → Aquatic	16.26%
Plants	Host-Associated → Plants	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.93%
Freshwater	Environmental → Aquatic → Freshwater	8.94%
Sediment	Environmental → Aquatic → Sediment	4.06%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.54%
Loam	Environmental → Terrestrial → Soil → Loam	22.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.06%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.06%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.25%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.02%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	15.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.20%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	7.32%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.06%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.06%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.25%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_104726051	3300001593	Forest Soil	MICGLCTISLVLGTAIAYLANGYPKHQTVLETVAGFLLIGGLGMLGYALEAVFGQP*
JGIcombinedJ26739_1001499073	3300002245	Forest Soil	MLIXPSVSIWRSAMITAFSTMSLVLGTAIAYLASGYPERQAAMETVGGILLLGGLGLMGYALECVLGQPLP*
JGIcombinedJ26739_1011183471	3300002245	Forest Soil	MITGFSAISLVLGTTIAYLANSYPPHRAVVETVGGILLLSGFGLMGYALEAILWDPSG
JGIcombinedJ26739_1015206371	3300002245	Forest Soil	AGLSTISLILGTAIAYLASRYPKRQAVMEAVGGILLIGGLGLVGYALECVLGPPL*
JGIcombinedJ51221_100448783	3300003505	Forest Soil	MMSLVLGATIAYLAGSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP*
JGIcombinedJ51221_100926082	3300003505	Forest Soil	MICGLSTIGLVLGTAIAYLANGYPKHQTVMETVAGFLLIGGLGMLGYALEAVFGHP*
Ga0062385_110296913	3300004080	Bog Forest Soil	MAYMASRYPEHRTIMETAGRILLFGGLSLMGYALEAILGQP*
Ga0062384_1008947381	3300004082	Bog Forest Soil	MFTGLSTVSLLFGTAIAYMASRYPKHRAVMETVAGVLLIGGLGLMGYALEAFWGRAN
Ga0062387_1009792781	3300004091	Bog Forest Soil	MITGLSIISLLLGTASAYKASRYPEHRAVMETVGGILLIGGFGLMGYALEAVLGHPLP*
Ga0062389_1019830883	3300004092	Bog Forest Soil	MFTGLSTVSLLFGTAIAYMASRYPKHRAVMETVAGVLLIGGLGLRDTPLNAFWGRAN
Ga0070714_1022911371	3300005435	Agricultural Soil	TMSLVLGTAIAYLASGYPKHQAAIEAVAGVLLLGGLALMGYTLEAILGQPLP*
Ga0070731_102027323	3300005538	Surface Soil	MIAGLSTISLVLGTSIAYMANGYPKHRAILETVGGALLLAGLGLMGYALEAVLGHP*
Ga0070731_105784881	3300005538	Surface Soil	DLVRLSAPISWSLMICGLSTIGLVLGTAIAYLANGYPKHQSVMETVAGFLLLGGLGMLGYALEAAFGHP*
Ga0070732_103819282	3300005542	Surface Soil	MITGLSTISLLLGAAIAYMATRYPKHRVVLEAAGGALLIGGLSLIGYALEAVLG
Ga0070732_106063232	3300005542	Surface Soil	ISLILGTAIAYLASSYPKHQTAIETLAGVLLLGGLALMGYTLNAVLGQPLP*
Ga0070761_111116292	3300005591	Soil	MITVFSAISLVLGTSIAYLANSYPKHRALMETVGGVLLIGGLGLKGYALEAALGPP*
Ga0070762_100588232	3300005602	Soil	MITGLSTISLLLGTAIAYMARGYPERQAVMETAGGILLISGLGLMGYALECILGHP*
Ga0070762_106002311	3300005602	Soil	SLLFGTAIAYMATRYPKHRAVMETVGGVLLIGGLGLMGYALGCVLGPR*
Ga0070766_102817112	3300005921	Soil	MICGLSTIGLVLGTAIAYLANGYPKHQIVMETVAGFLLIGGLGMLGFALEAVFGHP*
Ga0070766_107875291	3300005921	Soil	MIAGLNTISLVLGTAVAYLASGYPKHRAAIGTVGGILLLGGFGLMGYALECALGHP*
Ga0075028_1009349762	3300006050	Watersheds	MITGLTTISLLLGTAIAYMATRYPEHRTVMETVGGFLLIGGLGLLGYALEAVLGHP*
Ga0075017_1002127311	3300006059	Watersheds	MITGLSTISLILGTAIAYLASSYPKHQAAIETLAGVLLLGGLALMGYTLEAVLGQPLP*
Ga0075017_1002740351	3300006059	Watersheds	LVLVLGTAIAYLANGYPKYQAAMETVAGFLLLGGLGMLGYALEAILGHP*
Ga0075014_1003087972	3300006174	Watersheds	MISGLSVIGLMLGTAIACMAKDYPKHRAAVETVAGILLIGGLGLLGYVLEVILGRP*
Ga0070765_1003993572	3300006176	Soil	MIAALSTISLLLGTAIAYLASGYPERRAAMETAGGVLLLAGLSLKGYALETILGHP*
Ga0070765_1008033191	3300006176	Soil	MITGLSTAGLVLGTAIAYFAGGYPKYRAAMETAGGILLLGGLGLIGYALECVLGHSP*
Ga0070765_1013204553	3300006176	Soil	MICGLSTIGLVLGTAIAYLANGCPKYQAVLETVAGLLLIGGLGMLGYALEAILGH
Ga0070765_1021765951	3300006176	Soil	ICGLSTISCLVVGTAIAYMASGLPRHRAAMEIVAGILLIGGLGMLGYALEAVLGHP*
Ga0073928_101097291	3300006893	Iron-Sulfur Acid Spring	MICGLSTISLVLGTAIAYLANGYPKYQALMETVAGFLLIGGLGMLGYALEAVLGHP*
Ga0073928_103117313	3300006893	Iron-Sulfur Acid Spring	MICGLSTIGLVVGTAIAYLANGYPKYQAVLETVAGLLLIGGLGMLGYGLEAVFGQP*
Ga0116108_11074812	3300009519	Peatland	MICGLSAISLVFGTAIAYLANGYPKHRAAMETVAGILLLGGLGLMGYALEAVLGHP*
Ga0116222_13022722	3300009521	Peatlands Soil	MITGLSTVSLLLGTAIAYLAGRYPERRAVMETAGGFLLIGGFGMLGYALEAVLGHP*
Ga0116222_13658811	3300009521	Peatlands Soil	MITGLSTISLVLGTAVAYLASGYPERRAVMETVGGILLISGLGLMGYALEAVLGHP*
Ga0116217_106040681	3300009700	Peatlands Soil	MIITGLSAISLVLGTAIAYLANSYPEYRVIMETAGGILLLVGLGLIGYALEAVLGCPFP*
Ga0116223_103070302	3300009839	Peatlands Soil	MITGLSTVSLLLGTAIAYMAGRYTERRAVMETVGGFLLIGGLGMLGYALEAVFGHP*
Ga0116223_103440892	3300009839	Peatlands Soil	MITGLSTLSLILGTAIAYLASGYPERQAVMETVGGILLIGGLSLMGYALEAVLGHP*
Ga0136449_1001019136	3300010379	Peatlands Soil	MISGLSTISLLLGTAIAYLASGYPERQAVMETVGGVLLLAGLGLMGYALEAVLGHP*
Ga0136449_1004445841	3300010379	Peatlands Soil	MICGLSAISLVFGTAIAYLANGYPKHRAAMETVAGILLLGGLGLMGYALEAV
Ga0136449_1006415752	3300010379	Peatlands Soil	MISGLSVICLMLGKTIACMAKDYPKHRASVETVAGILLIGGLGLLGYVLEVILGRP*
Ga0136449_1024997472	3300010379	Peatlands Soil	MITTFSTVSLVLGTAIAYLASGYPERQAAMDTVGGILLIGGLGSIGYALECVLGHP*
Ga0136449_1032767391	3300010379	Peatlands Soil	MMITSFSTMSLVIGAAVAYMASRYPERRAVMETVGGVLLIGGLGLMGYALEAVLGPP*
Ga0136449_1037863571	3300010379	Peatlands Soil	MIITGLSAISLVLGTAIAYLANSYPEYRVIMETAGGILLLGGLGLIGYALEAVLGCPFP*
Ga0136449_1041833072	3300010379	Peatlands Soil	FGTAIAYLANGYPKHRAAMETVAGILLLGGLGLMGYALEAVFGHP*
Ga0137391_112043961	3300011270	Vadose Zone Soil	MIIASGVISLVFGTAIAYIANRFPVHRATIETVAGVLLIGGLGLMGYALECALGHP*
Ga0137390_118251211	3300012363	Vadose Zone Soil	LGTSIAYMANGYPKHRAILETVGGVLLLAGLGSMGYALEAVLGHP*
Ga0181521_103260741	3300014158	Bog	SIFWSVMITGLSTISLVLGTAVAYLASGYPERRAVMETVGGILLISGLGLMGYALEAVLGHP*
Ga0181526_105897292	3300014200	Bog	VIFGVDLMIVMVCGLSVISLTLGTAIACSAKCRSKHRAAIETVAGILLIAGMGLLGYALESVLGHP*
Ga0181526_107366341	3300014200	Bog	MITGLCTISLLLGTAVAYLASSYPEHRAVMETVGGILLIGGLGLMGYALEAVLGHP*
Ga0181526_109157671	3300014200	Bog	MLILSAVSISWSVMITGLSTISLVLGTTIAYLASGYPERHATMETVGGILLLGGLGLMGYALKSVLGHP*
Ga0182018_101523962	3300014489	Palsa	MITGLTTIILLLGTTIAYMATRYPEHRTVMETVGGFLLIGGLGLLGYALEAVLGHP*
Ga0182024_124555042	3300014501	Permafrost	MICGLSAISLVLGAAIAFLAKGYPKHQAAMETVAGFLLIGGLGMLGYALEAVLGHP*
Ga0187853_101517441	3300017940	Peatland	MICGLSAISLVFGTAIAYLANGYPKHRAAMETVAGILLLGGLGLMGYALEAVLGHP
Ga0210403_103227061	3300020580	Soil	WIFLVMITGLSTISLVLGMTIAYMASGYPERRAAMETLGGFLLLGGLGLIGYALECVLEQPLP
Ga0210399_102075192	3300020581	Soil	MMSLVLGATIAYLAGSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP
Ga0210399_107519401	3300020581	Soil	MICGLSTIGLVLGTAIAYLANGYPKHQTVMETVAGFLLIGGLGMLGYALEAVFGHP
Ga0210395_103786652	3300020582	Soil	MITGLSTISLLLGTAIAYMARGYPERQAVMETAGGILLISGLGLMGYALECILGHP
Ga0210395_111139641	3300020582	Soil	MIAALSTISLLLGTAIAYLASGYPERRAAMETAGGVLLLAGLSLKGYALETILGHP
Ga0210395_112350191	3300020582	Soil	MITGLSTISLLLGTAVAYLASGYPERQVAMETVGGVLLLAGLGLMGYALETVLGHP
Ga0210401_100386412	3300020583	Soil	MSLLLGTAVAYMASRYPERRAIMETVGGVLLIGGLGFMGYALEAALGPP
Ga0210404_100474851	3300021088	Soil	MITGLSTISLLFGTAIAYMATRYPKHRAVMETVGGVLLIGGLGLMGYALECVLGLP
Ga0210400_114361951	3300021170	Soil	MISGISTGSLVLGTAIAYLASRYPKYRAAMETVGGILLLGGLGLMGYALECALGVSFQ
Ga0210396_101824281	3300021180	Soil	MICGLSTIGLVLGTAIAYLANGYPKHQIVMETVAGFLLIGGLGMMGYALEAVFGHP
Ga0210396_113025271	3300021180	Soil	MSLVLGATIAYLAGSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP
Ga0210388_102384232	3300021181	Soil	MICGLSTIGLVLGTAIAYLANGCPKYQAVLETVAGLLLIGGLGMLGYELEAILGHP
Ga0210388_111977761	3300021181	Soil	MITGLSMMSLVLGATIAYLAGSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP
Ga0210388_113766101	3300021181	Soil	MITGISAISLVLGATIAHLANGYPQHRAVLETAGGILLLGGLGLMGYALEAILPCPLS
Ga0210393_102542601	3300021401	Soil	MIAALSTISLLLGTAIAYLASGYPERRAAMETAGGVLLLAGLSLKGCALETILGHP
Ga0210393_107865362	3300021401	Soil	MICGLSTIGLVLGTAIAYLANGCPKYQAVLETVAGLLLIGGLGMLGYALEAILGHP
Ga0210385_100155186	3300021402	Soil	MQANKLLLSLVLIFWSVMITGLSTISLVLGMTIAYMASGYPERRAAMETLGGFLLLGGLGLIGYALECVLGQPLP
Ga0210385_112137782	3300021402	Soil	MICGLSTIGLVLGTAIAYLANGYPKHQIVMETVAGFLLIGGLGMMGYALEAVFG
Ga0210397_107525502	3300021403	Soil	TISLVLGTAIAYLASGYPERQAVMETVGGILLIGGLGLMGYALECVLGQPLP
Ga0210389_101280892	3300021404	Soil	MICGLSTIGLVLGTAIAYLANGYPKYQAVLETVAGLLLIGGLGMLGYALEAILGHP
Ga0210386_111679331	3300021406	Soil	MITGLSAISLMLGTAIAYSASSYPKHQAAIETLAGLLLLGGLALMGYTLEAVVGQPLP
Ga0210383_101258753	3300021407	Soil	MICGLSTIGLVLGTAIAYLANGYPKHQTVMETVAGFLLIGGLGMLGYALEAVFGHS
Ga0210383_109153712	3300021407	Soil	MILGLSTMSLLLGTAVAYMASRYPERRAIMETVGGVLLISGLGFMGYALEAALGPP
Ga0210394_100881104	3300021420	Soil	MGLLLGTAIAYMARHYPERQQAVMETVGGMLLIGGLGLMGYALDAVLGHP
Ga0210394_101073273	3300021420	Soil	MICGLCTISLVLGTAIAYLANGYPKHQTVLETLAGFLLIGGLGMLGYALEAVFGQP
Ga0210394_106631622	3300021420	Soil	MICGLCTISLVLGTAMAYLANGYPKHQTVLETLAGFLLIGGLGMLGYALEAVFGQP
Ga0210394_107043691	3300021420	Soil	MWSVMVTGLSTISLPLGTAIAYMARGYPEHQAVMETVGGILLIGGLGLMGYALEAVLGHP
Ga0210390_102171123	3300021474	Soil	MLIRPSVSIYWSAMITGLSTISLLLGTAVAYLASGYPERQVAMETVGGVLLLAGLGLMGYALETVLGHP
Ga0210390_103145082	3300021474	Soil	MIAGLSTISLMLGTAIAYSASSYPKHQEAVETLAGLLLLGGLALMGYALEAVLGQPLP
Ga0210390_104411022	3300021474	Soil	MITGFCTTCLLLGTAIAYMASRYPNHQAIMETVGGILIIGGLGLIGY
Ga0210402_101397332	3300021478	Soil	MMITGLSTIGLLLGTAIAYSAGGYPERQAVMETVGGILLLGGLGLMGYALETVLGHP
Ga0242655_100738601	3300022532	Soil	MITGLSTISLVLGTAIAYLASGYPERQAVMETVGGILLIGGLGLMGYALECVLGQPLP
Ga0212123_102035782	3300022557	Iron-Sulfur Acid Spring	MIITGNSAVSSVLGTAIAYMANVYPERRKVLEAVAGILLIGDLGLMGCALEAVFGYP
Ga0212123_103696751	3300022557	Iron-Sulfur Acid Spring	MICGLSTIGLVVGTAIAYLANGYPKYQAVLETVAGLLLIGGLGMLGYGLEAVFGQP
Ga0224563_10101241	3300022731	Soil	LPSVSIFWSVMITGLSTMSLVLGTTIAYLASSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP
Ga0224572_10532012	3300024225	Rhizosphere	MICGLSTIGLVLGTAIAYLANGYPKHQMVMETVAGFLLIGGLGMLGYALEAVFGHP
Ga0208603_10659571	3300027109	Forest Soil	MITGLSMMSLVLGATIAYLAGSYPEHRAVMETVGGILLIGGLGLMGFALEAVL
Ga0209332_10149451	3300027439	Forest Soil	MICGLCTISLVLGTAIAYLANGYPKHQTVLETVAGFLLIGGLGMLGYALEAVFGQP
Ga0209329_10399971	3300027605	Forest Soil	MICGLCTISLVLGTAMAYLANGYPKHQTVLETLAGFLLIGGLGMLGYALEAVFGQQEVEVVA
Ga0209625_10384582	3300027635	Forest Soil	MITGLSTISLLLGTVIAYLASGYPERQAAMETVGGILLLGGLGLMGYALECVLGQPLP
Ga0209448_101375932	3300027783	Bog Forest Soil	MITGLSIISLLLGTASAYKASRYPEHRAVMETVGGILLIGGFGLMGYALEAVLGHPLP
Ga0209580_104201911	3300027842	Surface Soil	ISLILGTAIAYLASSYPKHQTAIETLAGVLLLGGLALMGYTLNAVLGQPLP
Ga0209517_105019842	3300027854	Peatlands Soil	MITGLSTISLVLGTAVAYLASGYPERRAVMETVGGILLISGLGLMGYALEAVLGHP
Ga0209579_101414883	3300027869	Surface Soil	MIAGLSTISLVLGTSIAYMANGYPKHRAILETVGGALLLAGLGLMGYALEAVLGHP
Ga0209169_104164331	3300027879	Soil	SLVLGMTIAYMASGYPERRAAMETLGGILLLGGLGLIGYALECVLDQPLP
Ga0209380_101247904	3300027889	Soil	MSLVLGTTIAYLASSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP
Ga0209380_101253563	3300027889	Soil	MICGLSTIGLVLGTAIAYLANGYPKHQIVMETVAGFLLIGGLGMLGFALEAVFGHP
Ga0209067_108364701	3300027898	Watersheds	MITSFSAMSLVIGAAVAYMASRYPERRAVLETVGGVLLIGGLGLMGYALEAVLGPP
Ga0209006_100229118	3300027908	Forest Soil	MICGLSTIGLVLGTAVSYLANGYPKYQAVLETVAGLLLIGGLGMLGYALEAILGHP
Ga0209006_102913521	3300027908	Forest Soil	MITGFSAISLVLGTTIAYLANSYPPHRAVVETVGGILLLSGFGLM
Ga0209006_104583751	3300027908	Forest Soil	MITGVSAISLILGTAIAYLASGYPERQAVMETVGGFLLLAGLGLMGYAFEAVLGHP
Ga0209526_100928823	3300028047	Forest Soil	MITAFSTMSLVLGTAIAYLASGYPERQAAMETVGGILLLGGLGLMGYALECVLGQPLP
Ga0209526_108381531	3300028047	Forest Soil	MITVFSAISLVLGTSIAYLANSYPKHRALMETVGGVLLIGGLGLIVYALEAVLGPPY
Ga0316363_102220962	3300030659	Peatlands Soil	MITGLSTLSLILGTAIAYLASGYPERQAVMETVGGILLIGGLSLMGYALEAVLGHP
Ga0310038_103356541	3300030707	Peatlands Soil	MIITGLSAISLVLGTAIAYLANSYPEYRVIMETAGGILLLGGLGLIGYALEAVLGCPFP
Ga0265770_11028601	3300030878	Soil	PSVSIFWSVMITGLSTMSLVLGTTIAYLASSYPEHRAVMETVGGILLIGGLGLMGFALEAVLGHPLP
Ga0170834_1011338172	3300031057	Forest Soil	MITGLSAISLTLGTAIAYLASGKPKHRAAMETVGGILLLGGLGLIGYALECVLGQPLP
Ga0170823_166874812	3300031128	Forest Soil	MITAFSVISLLLGTAIAYMANGYPRYQAVMETVGGILMIGGLGLVGYGLEAVLGLP
Ga0170824_1050848761	3300031231	Forest Soil	MIITRISTISLVLGTAIAYMANGYPERREVLETVAGILLIGGLGLMGFALETVFGYP
Ga0170824_1097459182	3300031231	Forest Soil	MITGLSTISLILGTAIAYLAISYPKHQAAIETLAGVLLLGGLALMGYTLEAVLGQPLP
Ga0170824_1134523761	3300031231	Forest Soil	AIAYLASGYPERQATMETVGGVLLLAGLGLMGYALEAVWGIP
Ga0170824_1272584521	3300031231	Forest Soil	MITAFSVISLVLGTAIAYMANGYPRYQAVMETVGGILMIGGLGLVGYGLEAVLGLP
Ga0170820_120370731	3300031446	Forest Soil	SLVLGTAIAYMANGYPRYQAVMETVGGILMIGGLGLVGYGLEAVLGLP
Ga0170820_135671991	3300031446	Forest Soil	MITGLSTISLLLGTAIAYLASGYPERQATMETVGGVLLLAGLGLVGYALEAVWGIP
Ga0170818_1062261701	3300031474	Forest Soil	MITGLSTISLLLGTAIAYLASGYPERQATMETVGGVLLLAGLGLMGYALEAVWGIP
Ga0310686_1091795112	3300031708	Soil	MICGLSSIGLVLGTAIAYLANGYPKHQIVMETVAGFLLIGGLGMLGFALEAVFGHP
Ga0307474_108275591	3300031718	Hardwood Forest Soil	MICGLSTISLVLGTAVAYLANGYPKQQTVMETVAGFLLIGGLGMLGYALEAVFGHP
Ga0311301_1005638013	3300032160	Peatlands Soil	MITGLSTVSLLLGTAIAYLAGRYPERRAVMETAGGFLLIGGFGMLGYALEAVLGHP
Ga0311301_100595455	3300032160	Peatlands Soil	MLIRPSVSIFWSVMITGLSTISLVLGTAVAYLASGYPERRAVMETVGGILLISGLGLMGYALEAVLGHP
Ga0311301_102852051	3300032160	Peatlands Soil	MISGLSTISLLLGTAIAYLASGYPERQAVMETVGGVLLLAGLGLMGYALEAVLGHP
Ga0311301_121133911	3300032160	Peatlands Soil	MITGLSTVSLLLGTAIAYMAGRYTERRAVMETVGGFLLIGGLGMLGYALEAVFGHP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070437

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences