Metagenome Family F070506

Basic Information
Family ID	F070506
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	54 residues
Representative Sequence	MDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA
Number of Associated Samples	103
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.13 %
% of genes near scaffold ends (potentially truncated)	30.89 %
% of genes from short scaffolds (< 2000 bps)	88.62 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Most Common Taxonomy
Group	Unclassified (59.350 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.569 % of family members)
Environment Ontology (ENVO)	Unclassified (21.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (27.642 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.15% β-sheet: 0.00% Coil/Unstructured: 65.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF09361	Phasin_2	4.07
PF01042	Ribonuc_L-PSP	3.25
PF00487	FA_desaturase	2.44
PF11953	DUF3470	2.44
PF00118	Cpn60_TCP1	1.63
PF00190	Cupin_1	0.81
PF05532	CsbD	0.81
PF04055	Radical_SAM	0.81
PF13610	DDE_Tnp_IS240	0.81
PF05170	AsmA	0.81
PF03544	TonB_C	0.81
PF14305	ATPgrasp_TupA	0.81
PF00211	Guanylate_cyc	0.81
PF06347	SH3_4	0.81
PF07332	Phage_holin_3_6	0.81
PF00313	CSD	0.81
PF01066	CDP-OH_P_transf	0.81
PF07510	DUF1524	0.81
PF00037	Fer4	0.81
PF13520	AA_permease_2	0.81
PF06863	DUF1254	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	3.25
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	2.44
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	2.44
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.63
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.81
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.81
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.81
COG2982	Uncharacterized conserved protein AsmA involved in outer membrane biogenesis	Cell wall/membrane/envelope biogenesis [M]	0.81
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.81
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.81
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
All Organisms	root	All Organisms	40.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
cellular organisms	root	All Organisms → cellular organisms	40.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.84 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.77 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.33 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	4.88 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.25 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.44 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.63 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
unclassified Ensifer	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Chelicerata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Arachnida	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Acari	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Parasitiformes	superorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Ixodida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Ixodoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Ixodidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Rhipicephalinae	subfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Rhipicephalus	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Rhipicephalus	subgenus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Rhipicephalus	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.35 %
Ensifer sp. IC3342	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.44 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.44 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.63 %
Rhipicephalus pulchellus	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Rhipicephalus → Rhipicephalus pulchellus	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725003\|GPWSG_F5G3JLY01A1WYJ	Not Available	513	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10954065	Not Available	620	Open in IMG/M
3300003990\|Ga0055455_10008684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2193	Open in IMG/M
3300004006\|Ga0055453_10300477	Not Available	517	Open in IMG/M
3300004063\|Ga0055483_10024482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1700	Open in IMG/M
3300004070\|Ga0055488_10099361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300004071\|Ga0055486_10172396	Not Available	538	Open in IMG/M
3300004145\|Ga0055489_10171404	Not Available	665	Open in IMG/M
3300004156\|Ga0062589_102398227	Not Available	544	Open in IMG/M
3300004157\|Ga0062590_101959903	Not Available	606	Open in IMG/M
3300004463\|Ga0063356_102524213	Not Available	788	Open in IMG/M
3300004481\|Ga0069718_15786351	Not Available	609	Open in IMG/M
3300005045\|Ga0071328_154989	All Organisms → cellular organisms → Bacteria → Proteobacteria	2882	Open in IMG/M
3300005093\|Ga0062594_102828522	Not Available	540	Open in IMG/M
3300005290\|Ga0065712_10666216	Not Available	561	Open in IMG/M
3300005332\|Ga0066388_102818484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
3300005365\|Ga0070688_100793706	Not Available	740	Open in IMG/M
3300005456\|Ga0070678_100805061	Not Available	853	Open in IMG/M
3300005547\|Ga0070693_101473828	Not Available	531	Open in IMG/M
3300005843\|Ga0068860_100420955	Not Available	1324	Open in IMG/M
3300006050\|Ga0075028_100714626	Not Available	604	Open in IMG/M
3300006057\|Ga0075026_100156238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1174	Open in IMG/M
3300006059\|Ga0075017_100010243	All Organisms → cellular organisms → Bacteria → Proteobacteria	5958	Open in IMG/M
3300006059\|Ga0075017_100029973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3581	Open in IMG/M
3300006172\|Ga0075018_10838056	Not Available	507	Open in IMG/M
3300006175\|Ga0070712_100139455	Not Available	1848	Open in IMG/M
3300006792\|Ga0075530_1135692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300006844\|Ga0075428_101791323	Not Available	639	Open in IMG/M
3300006847\|Ga0075431_100182999	Not Available	2150	Open in IMG/M
3300006853\|Ga0075420_100304274	Not Available	1382	Open in IMG/M
3300006854\|Ga0075425_101089164	Not Available	910	Open in IMG/M
3300006881\|Ga0068865_101565047	Not Available	592	Open in IMG/M
3300008470\|Ga0115371_11016246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1593	Open in IMG/M
3300009078\|Ga0105106_10724474	Not Available	710	Open in IMG/M
3300009091\|Ga0102851_13317567	Not Available	517	Open in IMG/M
3300009148\|Ga0105243_10342556	Not Available	1370	Open in IMG/M
3300009148\|Ga0105243_10529176	Not Available	1122	Open in IMG/M
3300009156\|Ga0111538_10581240	Not Available	1420	Open in IMG/M
3300009156\|Ga0111538_11667208	Not Available	803	Open in IMG/M
3300009156\|Ga0111538_12057568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	718	Open in IMG/M
3300009168\|Ga0105104_10105011	Not Available	1521	Open in IMG/M
3300009168\|Ga0105104_10420293	Not Available	745	Open in IMG/M
3300009499\|Ga0114930_10225606	Not Available	935	Open in IMG/M
3300009553\|Ga0105249_10881551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300010379\|Ga0136449_102518097	Not Available	737	Open in IMG/M
3300010400\|Ga0134122_10465572	Not Available	1135	Open in IMG/M
3300011119\|Ga0105246_10270735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1358	Open in IMG/M
3300011119\|Ga0105246_10323691	Not Available	1254	Open in IMG/M
3300012019\|Ga0120139_1220229	Not Available	505	Open in IMG/M
3300012892\|Ga0157294_10191322	Not Available	596	Open in IMG/M
3300012930\|Ga0137407_12334827	Not Available	511	Open in IMG/M
3300012955\|Ga0164298_10085633	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Rhipicephalus → Rhipicephalus pulchellus	1629	Open in IMG/M
3300012957\|Ga0164303_10394975	Not Available	852	Open in IMG/M
3300012957\|Ga0164303_10853681	Not Available	632	Open in IMG/M
3300012958\|Ga0164299_10104396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1480	Open in IMG/M
3300012971\|Ga0126369_10618945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1154	Open in IMG/M
3300012985\|Ga0164308_10052683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2640	Open in IMG/M
3300012985\|Ga0164308_10105162	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M
3300012985\|Ga0164308_10439801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1077	Open in IMG/M
3300013297\|Ga0157378_10914048	Not Available	909	Open in IMG/M
3300013772\|Ga0120158_10444087	Not Available	586	Open in IMG/M
3300014310\|Ga0075331_1020972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1447	Open in IMG/M
3300014325\|Ga0163163_12207770	Not Available	610	Open in IMG/M
3300015371\|Ga0132258_10526617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2959	Open in IMG/M
3300015371\|Ga0132258_11888500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1504	Open in IMG/M
3300015374\|Ga0132255_101423312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1048	Open in IMG/M
3300017997\|Ga0184610_1211307	Not Available	649	Open in IMG/M
3300018022\|Ga0187864_10438831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	556	Open in IMG/M
3300018028\|Ga0184608_10103204	Not Available	1193	Open in IMG/M
3300018076\|Ga0184609_10056412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1688	Open in IMG/M
3300018429\|Ga0190272_13163687	Not Available	512	Open in IMG/M
3300018469\|Ga0190270_10837283	Not Available	931	Open in IMG/M
3300018469\|Ga0190270_13463279	Not Available	501	Open in IMG/M
3300020580\|Ga0210403_10480394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1011	Open in IMG/M
3300025313\|Ga0209431_11034020	Not Available	577	Open in IMG/M
3300025322\|Ga0209641_10999922	Not Available	543	Open in IMG/M
3300025552\|Ga0210142_1028269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300025556\|Ga0210120_1122851	Not Available	520	Open in IMG/M
3300025615\|Ga0210086_1147704	Not Available	686	Open in IMG/M
3300025721\|Ga0209587_1010577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3089	Open in IMG/M
3300025919\|Ga0207657_11161834	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300025933\|Ga0207706_11250892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	615	Open in IMG/M
3300025959\|Ga0210116_1073428	Not Available	665	Open in IMG/M
3300026118\|Ga0207675_101940251	Not Available	607	Open in IMG/M
3300026118\|Ga0207675_102121409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	578	Open in IMG/M
3300027680\|Ga0207826_1103486	Not Available	783	Open in IMG/M
3300027680\|Ga0207826_1151737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300027703\|Ga0207862_1029613	Not Available	1644	Open in IMG/M
3300027703\|Ga0207862_1060520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M
3300027822\|Ga0209633_10111018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1652	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10079340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1565	Open in IMG/M
(restricted) 3300027997\|Ga0255057_10590840	Not Available	539	Open in IMG/M
3300028381\|Ga0268264_10413122	Not Available	1300	Open in IMG/M
3300029984\|Ga0311332_10591545	Not Available	876	Open in IMG/M
3300031170\|Ga0307498_10178320	Not Available	726	Open in IMG/M
3300031256\|Ga0315556_1032519	Not Available	2242	Open in IMG/M
3300031274\|Ga0307442_1002122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9728	Open in IMG/M
3300031274\|Ga0307442_1035083	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300031274\|Ga0307442_1080357	Not Available	970	Open in IMG/M
3300031280\|Ga0307428_1166694	Not Available	546	Open in IMG/M
3300031357\|Ga0307435_1126544	Not Available	576	Open in IMG/M
3300031360\|Ga0307444_1001500	All Organisms → cellular organisms → Bacteria → Proteobacteria	10000	Open in IMG/M
3300031455\|Ga0307505_10170026	Not Available	1000	Open in IMG/M
3300031537\|Ga0307419_10148636	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300031539\|Ga0307380_10228451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1775	Open in IMG/M
3300031539\|Ga0307380_11000947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	667	Open in IMG/M
3300031562\|Ga0310886_10417405	Not Available	795	Open in IMG/M
3300031562\|Ga0310886_10582423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	685	Open in IMG/M
3300031566\|Ga0307378_11065507	Not Available	652	Open in IMG/M
3300031698\|Ga0315537_1157555	Not Available	1023	Open in IMG/M
3300031847\|Ga0310907_10108993	Not Available	1210	Open in IMG/M
3300031858\|Ga0310892_10895989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	620	Open in IMG/M
3300031873\|Ga0315297_10296671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1346	Open in IMG/M
3300031949\|Ga0214473_10160487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2613	Open in IMG/M
3300031949\|Ga0214473_11320099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	739	Open in IMG/M
3300031949\|Ga0214473_12055275	Not Available	555	Open in IMG/M
3300032013\|Ga0310906_10572765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer → unclassified Ensifer → Ensifer sp. IC3342	775	Open in IMG/M
3300032075\|Ga0310890_10067715	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300032163\|Ga0315281_10382261	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300032205\|Ga0307472_101813478	All Organisms → cellular organisms → Bacteria → Proteobacteria	606	Open in IMG/M
3300033433\|Ga0326726_10971039	Not Available	825	Open in IMG/M
3300034192\|Ga0373896_044916	Not Available	515	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.24%
Host-Associated	Host-Associated	21.95%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	43.90%
Aquatic	Environmental → Aquatic	33.33%
Plants	Host-Associated → Plants	21.95%
Bioremediation	Engineered → Bioremediation	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.28%
Marine	Environmental → Aquatic → Marine	19.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.94%
Sediment	Environmental → Aquatic → Sediment	7.32%
Freshwater	Environmental → Aquatic → Freshwater	6.50%
Peat	Environmental → Terrestrial → Peat	1.63%
Roots	Host-Associated → Plants → Roots	0.81%
Metal	Engineered → Bioremediation → Metal	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.57%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.13%
Wetlands	Environmental → Aquatic → Marine → Wetlands	8.13%
Loam	Environmental → Terrestrial → Soil → Loam	8.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.25%
Clay	Environmental → Terrestrial → Soil → Clay	2.44%
Lake	Environmental → Aquatic → Freshwater → Lake	1.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.63%
Gulf	Environmental → Aquatic → Marine → Gulf	1.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.63%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.81%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	0.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.57%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	8.13%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	8.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.32%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.25%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.44%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.44%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.44%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.63%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	1.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.63%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.63%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.81%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.57%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	8.13%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	5.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.06%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.44%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	2.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.44%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.44%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.44%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.63%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	1.63%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.81%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.81%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	0.81%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004063	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004071	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009499	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025615	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025721	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027822	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 (SPAdes)	Environmental	Open in IMG/M
3300027872 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9	Environmental	Open in IMG/M
3300027997 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_6	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031256	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10	Environmental	Open in IMG/M
3300031274	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031357	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-70	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031537	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031652	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40	Environmental	Open in IMG/M
3300031698	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034192	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F070506

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_02036050	2067725003	Soil	MDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNK
ICChiseqgaiiFebDRAFT_109540651	3300000363	Soil	MDIKKDSRLPLPKIDQLVEDAKAALKLAGIETEGKRSDEILNMAREER
Ga0055455_100086843	3300003990	Natural And Restored Wetlands	MDTKKKHPLLSKIDQLVDDAKMELSRVGIETEGKRSDEILKMAREARNKSGRQARVTAE*
Ga0055453_103004771	3300004006	Natural And Restored Wetlands	MDTKKKHPLLSKIDQLVDDAKMELSRVGIETEGKRSDEILKMAREARNKA
Ga0055483_100244825	3300004063	Natural And Restored Wetlands	MDTKKNHPLLSKIDQLVDDAKTELSRVGIETEGKRSDEILKMAREARNKAGRQARVTDESESARQRLVRN*
Ga0055488_100993613	3300004070	Natural And Restored Wetlands	MDTKKKHSPLSKIDQLVDDAKTELSRLGIKTEGKRSDEILKMAREARNKAGRQARVTDEGESARRRPERS*
Ga0055486_101723961	3300004071	Natural And Restored Wetlands	MDTKKNHPLLSKIDQLVDDAKTELSRVGIETEGKRSDEILKMAREA
Ga0055489_101714042	3300004145	Natural And Restored Wetlands	MDKKNNSDLPLTKIDQLVDDAKTELKRIGIKTEGKRSDEILKMAREERNKPRVA*
Ga0062589_1023982272	3300004156	Soil	PLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKASRRVTLG*
Ga0062590_1019599032	3300004157	Soil	MDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA*
Ga0063356_1025242132	3300004463	Arabidopsis Thaliana Rhizosphere	MDIKKDSRLPLPKIDQLVEDAKAALKLAGIETEGKRSDEILNMAREERNKPRVA*
Ga0069718_157863511	3300004481	Sediment	PLPKIERLVDDAKAELKRAGIETDGKRSDEILNMAREERNKPRVT*
Ga0071328_1549899	3300005045	Permafrost	MDTKDIPRRPLPKIGQLVDDAKTELKRVGIDTEGKRPDEILKMAREERNKPRVA*
Ga0062594_1028285221	3300005093	Soil	MDTKKDSPLPLPKIERLVDDAKAELKRAGIETDGKRPDEILNMAREE
Ga0065712_106662161	3300005290	Miscanthus Rhizosphere	KMDTKTNPRLPLPKIDQLVDNAKTELKRVGIETEGKRSDEILKMAREARNKPRVA*
Ga0066388_1028184842	3300005332	Tropical Forest Soil	MDKKKNHPLQSKIDQLVEDARTELNRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0070688_1007937061	3300005365	Switchgrass Rhizosphere	LPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREARNKPRVA*
Ga0070678_1008050613	3300005456	Miscanthus Rhizosphere	WCGMDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA*
Ga0070693_1014738281	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PRLPLPKIDQLVDNAKTELKRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0068860_1004209554	3300005843	Switchgrass Rhizosphere	MDTKKDSPLPLPKIERLVDDAKAELKRAGIETDGKRPDEILNMAREERNKPRVT*
Ga0075028_1007146261	3300006050	Watersheds	MDTKDIPRRPLPKIGQLVDDAKIELKRVGIDTEGKRPDEILKMAREERN
Ga0075026_1001562383	3300006057	Watersheds	MDTKDTKRPLPKIGQLVDDAKTELKRVGIDTEGKRSDEILKMAREERNKPRVA*
Ga0075017_1000102438	3300006059	Watersheds	METKDTKRPLPKIGQLVDDAKTELKRVGIDTEGKRSDEILKMAREERNKPRVA*
Ga0075017_1000299733	3300006059	Watersheds	MDTKDIPRRPLPKIGQLVADAKTELKRVGIDTEGKRPDEILKMAREERNKPRLA*
Ga0075018_108380562	3300006172	Watersheds	MDTKDIPRRPLPKIGQLVADAKTELKRVGIDTEGKRPDEILKMAREERNKPRVA*
Ga0070712_1001394552	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VSAYSQMDTKKNHPLPSKIDRLVDDAKTELNRVGIETEGKRSDEILKMARDERNKPRVA*
Ga0075530_11356922	3300006792	Arctic Peat Soil	MAPKDITLVALPKIAQRVADAKTELKRVGIDTDGKRSDEILKMAREERNKPRVA*
Ga0075428_1017913231	3300006844	Populus Rhizosphere	MDTKKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0075431_1001829995	3300006847	Populus Rhizosphere	SRLPLPKIDQLVEDAKAALKLAGIETEGKRSDEILNMAREERNKPRVA*
Ga0075420_1003042742	3300006853	Populus Rhizosphere	MSAWCGMDIKKDSRLPLPKIDQLVEDAKAALKLAGIETEGKRSDEILNMAREERNKPRVA
Ga0075425_1010891642	3300006854	Populus Rhizosphere	METKKNHPLLLPKIDQLVEDAKTELKRVGIQTDGKRSDEILKMARDERNKPRVG*
Ga0068865_1015650472	3300006881	Miscanthus Rhizosphere	MDTKKDSPLPLHKIERLVDDAKAELKRAGIETDGKRPDEILNMAREERNKPRVT*
Ga0115371_110162464	3300008470	Sediment	MDTEKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREARNKAGRQARVTEESARQRLERN*
Ga0105106_107244741	3300009078	Freshwater Sediment	NETAMSAWCGMDTKKTPRLPLPKIDQLVDDAKAALKLVGIETEGNLSDEILKMAREERNKPRVA*
Ga0102851_133175672	3300009091	Freshwater Wetlands	MDTKKDLPPPLPKIERLVDDAKAELKRAGIETVGKRSD*
Ga0105243_103425563	3300009148	Miscanthus Rhizosphere	MDTKTNPRFPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREARNKPRMA*
Ga0105243_105291765	3300009148	Miscanthus Rhizosphere	SRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA*
Ga0111538_105812401	3300009156	Populus Rhizosphere	METKKNHPLLLPKIDQLVEDAKTELKRVGIQPDGKRSDEILKMARDERNKPRVG*
Ga0111538_116672083	3300009156	Populus Rhizosphere	MDTKKDSPLPLAKIERLVDDAKAELKRAGIETDGKRSDEILNMAREERNKPRVT*
Ga0111538_120575683	3300009156	Populus Rhizosphere	DTKKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0105104_101050111	3300009168	Freshwater Sediment	MDTKKDSPLPSPKIERLVDDAKAELKRAGIETDGKRSDEILNMAREERNKPRLRHVGD*
Ga0105104_104202932	3300009168	Freshwater Sediment	MDTKKDSRLPLPKIDQLVEDANTALRLAGIETDGKRSDEILKMARQERNKPRLA*
Ga0114930_102256061	3300009499	Deep Subsurface	MDTEKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREARNKAGRQTRVTEESARQRLERN*
Ga0105249_108815512	3300009553	Switchgrass Rhizosphere	MDTKKNQPLPSKIDQLVDDAKTELNRVGIETEGKRSDENLKMAREERNKPRVA*
Ga0136449_1025180973	3300010379	Peatlands Soil	MVTKDIPRLPLPKIGQLVEDAKTELKRVGIDTEGKRTDEILKMAREERNKPRVA*
Ga0134122_104655721	3300010400	Terrestrial Soil	KTNPRHPWPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREARNKPRMA*
Ga0105246_102707353	3300011119	Miscanthus Rhizosphere	MDTKKDSPLPLPKIERLVDDAKAELKRAGIETDGKRSDEILNMAREERNKPRVT*
Ga0105246_103236914	3300011119	Miscanthus Rhizosphere	MDTKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKASRRVTLG*
Ga0120139_12202292	3300012019	Permafrost	MDTKDIPRRPLPKIAELVDAAKTELKRVGIDTQGKRPEEILKMAREERNKPRVA*
Ga0157294_101913222	3300012892	Soil	TKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKASRRVTLG*
Ga0137407_123348271	3300012930	Vadose Zone Soil	MDTKKNHPLPLPKIDQLVDDARTELKRVGIETEGKRSDEILKMAREERNKPRLA*
Ga0164298_100856332	3300012955	Soil	MDTKKNHPPPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREERNKPRVATGRTKPTPSFSP*
Ga0164303_103949752	3300012957	Soil	MDTKKNHPPPSKIDQLVDDAKTELNRVGIETEGKHSDEILKMAREERNKPRVA*
Ga0164303_108536811	3300012957	Soil	SQMDTKKNQPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0164299_101043961	3300012958	Soil	MDTKKNHPPPSKIDQLVDDAKTELNRVGIETESKRSDEILKMAREERNKPRVA*
Ga0126369_106189453	3300012971	Tropical Forest Soil	MDKKKNHPLQSKIDQLVEDARTELNRVGIETEGKRTDEILKRAREERNKPRVA*
Ga0164308_100526834	3300012985	Soil	PLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0164308_101051626	3300012985	Soil	MDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERN
Ga0164308_104398012	3300012985	Soil	MDTKKNHPLPSKIDRLVDDAKTALNRVGIETEGKRSDEILKMARDERNKPRVA*
Ga0157378_109140483	3300013297	Miscanthus Rhizosphere	MDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLS*
Ga0120158_104440871	3300013772	Permafrost	MDTKDIPRRPLPKIAELVDAAKTELKRVGIDTQGKRPEEILKMAREERNKPRLA*
Ga0075331_10209722	3300014310	Natural And Restored Wetlands	MMDQKNNSTLPLTKIEQLVDNAKTALKRAGIETEGKRSDEILKMAREERNKPWVA*
Ga0163163_122077702	3300014325	Switchgrass Rhizosphere	RLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA*
Ga0132258_105266175	3300015371	Arabidopsis Rhizosphere	MDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0132258_118885002	3300015371	Arabidopsis Rhizosphere	MDIKKNHLLPSKIDQLVDDAKTQLNRAGIETDGKRSDEILKMAREERNKPRVE*
Ga0132255_1014233121	3300015374	Arabidopsis Rhizosphere	KNHPLQSKIDQLVEDARTELNRIGIETRGKRSDEILKMAREERNKPRVA*
Ga0184610_12113071	3300017997	Groundwater Sediment	MDTKKNPPLPLPKIGQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0187864_104388311	3300018022	Peatland	PRRPLPKIAELVDAAKTELKRVGIDTEGKRPDEILKMAREERNKPRVA
Ga0184608_101032043	3300018028	Groundwater Sediment	MDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0184609_100564122	3300018076	Groundwater Sediment	MDTKKSPPLPLPKIGQLVDDAKTERKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0190272_131636871	3300018429	Soil	MSAWCGMDTKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA
Ga0190270_108372833	3300018469	Soil	MDTKKDSRPPLPKIERLVDDAKAELKRAGIETDGKRPDEILNMAREERNKPRVA
Ga0190270_134632791	3300018469	Soil	MDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA
Ga0210403_104803941	3300020580	Soil	MDTKKNHPLPSKIDRLVDDAKTELNRVGIETEGKRSDEILKMARDERNKPRVA
Ga0209431_110340202	3300025313	Soil	SAWCGMDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA
Ga0209641_109999221	3300025322	Soil	MDTKDIPRRPLPKIGQLVDDAKTELKRLGIDTEGKRPDEILKMAREERNKPRVA
Ga0210142_10282692	3300025552	Natural And Restored Wetlands	MDTKKKHPLLSKIDQLVDDAKMELSRVGIETEGKRSDEILKMAREARNKSGRQARVTAE
Ga0210120_11228512	3300025556	Natural And Restored Wetlands	MDTKKKHPLLSKIDQLVDDAKMELSRVGIETEGKRSDEILKMAREARNKASRQARVADGSESARQRLERN
Ga0210086_11477041	3300025615	Natural And Restored Wetlands	MDTKKKHPLLSKIDQLVDDAKTELSRVGIETEGKRSDEILKMAREARNRAGRQAQTTDES
Ga0209587_10105773	3300025721	Arctic Peat Soil	MDTKDIPRRPLPKIGQLVDDAKAELKRLGIDTEGKRPDEILKMAREERNKPRVA
Ga0207657_111618341	3300025919	Corn Rhizosphere	GMDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRLA
Ga0207706_112508923	3300025933	Corn Rhizosphere	PLPKIDQLVDNAKTELKRVGIETEGKRSDEILKMAREARNKPRVA
Ga0210116_10734281	3300025959	Natural And Restored Wetlands	MDKKNNSDLPLTKIDQLVDDAKTELKRIGIKTEGKRSDEILKMAREERNKPRVA
Ga0207675_1019402511	3300026118	Switchgrass Rhizosphere	LPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKASRRVTLG
Ga0207675_1021214092	3300026118	Switchgrass Rhizosphere	PLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0207826_11034861	3300027680	Tropical Forest Soil	MDTKKNHPLPLPKIDQLVEDAKTELKRVGIQTEGKRSNEILKMARDERNKPRGA
Ga0207826_11517371	3300027680	Tropical Forest Soil	RMDTKRNHLLPSKIGQLVDDAKTELKRVGIQTEGKRSDEILKMARDERNKPRPRVA
Ga0207862_10296132	3300027703	Tropical Forest Soil	DTKKNHPLPLPKIDQLVEDAKTELKRVGIQTEGKRSDEILKMARDERNKPRGA
Ga0207862_10605203	3300027703	Tropical Forest Soil	MDTKKNHPLPLPKIDQLVDHAKTELKRLGIETEGKRSDEILKMARDERNKPRVA
Ga0209633_101110182	3300027822	Marine	MDIDKNHPRPSKIDQLVDEAKTELKRLGIETEGKRSDEILNMAREARIKAGRQARVADES
(restricted) Ga0255058_100793403	3300027872	Seawater	MDTEKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREARNKAGRQARVTEESARQRLERN
(restricted) Ga0255057_105908401	3300027997	Seawater	MDTEKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREARNKAGR
Ga0268264_104131222	3300028381	Switchgrass Rhizosphere	MDTKKDSPLPLPKIERLVDDAKAELKRAGIETDGKRPDEILNMAREERNKPRVT
Ga0311332_105915452	3300029984	Fen	MAPRDVTLIALPKIAQRVADARTELKRVGIDTEGKRPDEILKMAREERNRPRVA
Ga0307498_101783203	3300031170	Soil	MDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNK
Ga0315556_10325192	3300031256	Salt Marsh Sediment	MDKKNSSPLTKIDQLVDDAKTELKRVGIETEGKRSDEILRMAREERNKPRVA
Ga0307442_100212214	3300031274	Salt Marsh	MDKKNSSPLTKIDQLVDDAKTELKRVGIETEGKRSDEILRMAREERNK
Ga0307442_10350833	3300031274	Salt Marsh	MNNKDSSPLTKIDQLVDDAKIELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0307442_10803573	3300031274	Salt Marsh	LTKIDQLVDDAKIELKRVGIETEGKRSDEILKMAREERNKPRVV
Ga0307428_11666942	3300031280	Salt Marsh	MDKKNSSSLTKIDQLVDDAKIELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0307435_11265442	3300031357	Salt Marsh	MDIKKKHPLPSKIDQLVDDAKTELNRLGIETGGKRSDEILKMAREARNKAGRQAWITDDGESAPRRPERS
Ga0307444_100150010	3300031360	Salt Marsh	VLGWISKTAPPLTKIDQLVDDAKIELKRVGIETEDKRSDEILKMAREKRNKPRVA
Ga0307505_101700264	3300031455	Soil	LPLPKINQLVDDAKAALKLVGIETDGKRSDEILKMAREERNKPRIA
Ga0307419_101486362	3300031537	Salt Marsh	MDNKDSSPLTKIDQLVDDAKIELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0307380_102284513	3300031539	Soil	MDTEKNHPLPSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREARNKAGRQARVAEESRRARQ
Ga0307380_110009471	3300031539	Soil	MDIKKNHPLPSKNDQLVDDAKTQLNRAGIETDGKRSDEILKMACEERNKPRGD
Ga0310886_104174052	3300031562	Soil	MDTKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKASRRVTLG
Ga0310886_105824231	3300031562	Soil	HIRKMDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0307378_110655071	3300031566	Soil	MDTKKNHPLLSKIDQLVDDAKTELSRVGIETGGKRSDEILKMAREARNKAGRQARVTEESARQRLERN
Ga0315553_100829101	3300031652	Salt Marsh Sediment	MNNKDSSPLTKIDQLVDDAKIELKRVGIETEGKRSDEILKMARE
Ga0315537_11575553	3300031698	Salt Marsh Sediment	MDTKKNHPLLSKIDQLVDDAKTELNRVGIETGGKRSDEILKMAREARNKAGRQARVTDEGESARRRPQRS
Ga0310907_101089931	3300031847	Soil	MDTKKDSPLPLPKIERLVDDAKAELKRAGIETDGKRPDEIL
Ga0310892_108959893	3300031858	Soil	DTKTNPRFPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0315297_102966712	3300031873	Sediment	MDIKENPRLPLPKIGQLVDDAKKELKRLGIETEGKRPDEVLKMAREERNKPRVA
Ga0214473_101604875	3300031949	Soil	MDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRVA
Ga0214473_113200991	3300031949	Soil	MDTKKDSRPPLPKIDQLVEDAKAALRLAGIEIEGKRSDEILNMAREERNKPRVT
Ga0214473_120552751	3300031949	Soil	MSAWYGMDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERN
Ga0310906_105727651	3300032013	Soil	RLPLPKIDQLVDDAKTELKRVGIETEGKRSGEILKMAREERNKPRVA
Ga0310890_100677155	3300032075	Soil	MDIKKDSRLPLPKIDQLVEDAKAALRLAGIETEGKRSDEILNMAREERNKPRVV
Ga0315281_103822612	3300032163	Sediment	LPKIAQLVDDAKTELKRVGIDTDGKRSDEILKMAREERNKPRVA
Ga0307472_1018134781	3300032205	Hardwood Forest Soil	PSKIDQLVDDAKTELNRVGIETEGKRSDEILKMAREERNKPRVA
Ga0326726_109710391	3300033433	Peat Soil	MDIKKNHLLPSKIDQLVDDAKTQLNRAGIETDGKRSDEILKMAREERNKPRVE
Ga0373896_044916_18_182	3300034192	Sediment Slurry	MDAKKDSRPPLPKIERLVDDAKAELKRAGVETDGKRSDEILNMAREERNKPRVT

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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