NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F070543

Metagenome Family F070543

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070543
Family Type Metagenome
Number of Sequences 123
Average Sequence Length 56 residues
Representative Sequence VRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVDNTPSQEEKEEAVIT
Number of Associated Samples 93
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(11.382 % of family members)
Environment Ontology (ENVO) Unclassified
(52.033 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(66.667 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.11%    β-sheet: 0.00%    Coil/Unstructured: 70.89%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF08245Mur_ligase_M 42.28
PF01225Mur_ligase 25.20
PF03793PASTA 20.33
PF10555MraY_sig1 2.44
PF01098FTSW_RODA_SPOVE 0.81
PF03319EutN_CcmL 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG0769UDP-N-acetylmuramyl tripeptide synthaseCell wall/membrane/envelope biogenesis [M] 25.20
COG0770UDP-N-acetylmuramyl pentapeptide synthaseCell wall/membrane/envelope biogenesis [M] 25.20
COG0773UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl familyCell wall/membrane/envelope biogenesis [M] 25.20
COG4576Carboxysome shell and ethanolamine utilization microcompartment protein CcmK/EutMEnergy production and conversion [C] 1.63
COG0772Peptodoglycan polymerase FtsW/RodA/SpoVECell cycle control, cell division, chromosome partitioning [D] 0.81


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere11.38%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.32%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere5.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.88%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil4.88%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.06%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere4.06%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere4.06%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere4.06%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.25%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.25%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.25%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.25%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.44%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.44%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.44%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.63%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.63%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.63%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.81%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.81%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.81%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.81%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005238Microbial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, AustraliaEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012484Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300030496Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)EnvironmentalOpen in IMG/M
3300030516Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J35102_12049765223300002568SoilVRPAFSRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTSVQDEKEEAVIT*
Ga0063356_10128599713300004463Arabidopsis Thaliana RhizosphereSLRAQHHPPKHGSSGDVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLEPAANTASQEQTMEQEEAVIT*
Ga0073692_104035313300005238SoilHGSSGDVRPAAGRVGSFAEVFANDSMSQSSLSKLVECLLEPVADTPPQEEKEEAVIT*
Ga0065707_1023941923300005295Switchgrass RhizosphereHPPKDGSSGEARPGTGRVGSYAEVLANSMSQSSLSRLVECLLEPPRNTPAQEEKMEQEEAVIT*
Ga0068869_10036794323300005334Miscanthus RhizosphereRVGSFAEVLANVSMNQSSLSRLVECLLEPVDDTPSHAETMEQEEAVIT*
Ga0068868_10208122013300005338Miscanthus RhizosphereAEVLANVSMSQSSLSKLVECLLEPAANTTPQEEQEEAVIT*
Ga0070692_1066787823300005345Corn, Switchgrass And Miscanthus RhizosphereRMRSQRSSLRAPHHPPTDGSNGDARSAPSRGGSFAEVLANVSMNQSSLSRLVECLLEPVENTPSQHETMEQEEAVIT*
Ga0070692_1073243223300005345Corn, Switchgrass And Miscanthus RhizosphereRRLRSQRSSLRAQHHPPKHGSSGDVRPAAGRVGSFAEVFANVSMSQSSLSKLVECLLEPVASTSSQEEKEEAVIT*
Ga0070675_10058145513300005354Miscanthus RhizosphereVGSFAEVLANVSMSQSSLSKLVECLLEPVASTSSQDEKEEAVIT*
Ga0070659_10074817613300005366Corn RhizosphereSQRSSLRAQHHPPKHGSSGDVRPAPGRVGSFAEVFANVSMSQSSLSKLVECLLEPVASTPSQDEKEEAVIT*
Ga0070667_10164566123300005367Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDPVASTTSQEEKEEAVIT*
Ga0070705_10085653123300005440Corn, Switchgrass And Miscanthus RhizosphereHNPPQDGSSGEVHSATGRVGSYAEVLANSMSQSSLSRLVECLLEPPRNTPSQQEKMEQEEALIT*
Ga0070705_10135470313300005440Corn, Switchgrass And Miscanthus RhizospherePPTDGSNGDARSAPSRGGSFAEVLANVSMNQSSLSRLVECLLEPVENTPSQHETMEQEEAVIT*
Ga0070694_10129977513300005444Corn, Switchgrass And Miscanthus RhizosphereGSFAEVLANVSMNQSSLSRLVECLLEPDNTPSQRETMEQEEAVIT*
Ga0070694_10147297213300005444Corn, Switchgrass And Miscanthus RhizosphereVRPTASSVGSFAEVFANVSMSQSSLSKLVECLLEPVASTPSQDEKEE
Ga0070681_1115514513300005458Corn RhizosphereDVRSAPSRVGSFAEVLANVSMSQSSLSRLVECLLEPADNTPSHAETMEQEEAVIT*
Ga0070707_10005355313300005468Corn, Switchgrass And Miscanthus RhizosphereSLRAQHHPPLDGSNGDVRPAVGRVGSFAEVLANVSLNQSSLSRLVECLLDPVSNTPAQEETMEQEEAVIR*
Ga0070696_10119769413300005546Corn, Switchgrass And Miscanthus RhizosphereEVRSYAEIFASVSMSQSSLSRLVDCLLPPAERDESLPGIAEEREEAVIT*
Ga0070704_10198655313300005549Corn, Switchgrass And Miscanthus RhizosphereRSQRSSLRAQDHPPKDGSNDDVRSAPSRVGSFAEVLANVSMNQSSLSRLVECLLEPVDNTPSQRETMEQEEAVIT*
Ga0070664_10105266623300005564Corn RhizosphereAQDHPPKHGSSGYVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSPEKMKRP
Ga0070702_10019039223300005615Corn, Switchgrass And Miscanthus RhizosphereVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLEPIDNTASQEEKEEAVIT*
Ga0068859_10150639723300005617Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT*
Ga0068859_10269145023300005617Switchgrass RhizosphereLRAQDHPPKDGSNDDVRSAPSRVGSFAEVLANVSMSQSSLSRLVECLLEPADNTPSHAETMEQEEAVIT*
Ga0068864_10067924523300005618Switchgrass RhizosphereSQRSTLRAHNPPQDGSSGEVQSATGRVGSYAEVLANSMSQGSLSRLVECLLEPPRNTPSQDEKMEQEEALIT*
Ga0068864_10093636123300005618Switchgrass RhizosphereSLRAQHHPPKHGSSGDVRPAHSRVGSFAEVLANVSLSQGSLSKLVECLLEPVASTSSQDEKEEAVIT*
Ga0068864_10118053223300005618Switchgrass RhizosphereDHPPKHGSSGYVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT*
Ga0068870_1031114113300005840Miscanthus RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEP
Ga0068863_10057239213300005841Switchgrass RhizosphereGSNDEVRSAPGRVGSFAEVLANVSMNQSSLSRLVECLLEPVDNTPSHAETMEQEEAVIT*
Ga0068863_10119100313300005841Switchgrass RhizosphereQHHPPKHGSSGDVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLEPVDNTPSQEEKEEAVIT*
Ga0068858_10102141123300005842Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTTPQEEQGEAVIT*
Ga0068860_10050419823300005843Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEKKEEAVIT*
Ga0068860_10088923323300005843Switchgrass RhizosphereVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLEPIDNTASQEEKEEAVIT*
Ga0068860_10222933223300005843Switchgrass RhizosphereMRSQRSSLRAQDHPPKDGSNDDVRSAPSRVGSFAEVLANVSMNQSSLSRLVECLLEPVDDTPSHAETMEQEEAVIT*
Ga0068862_10034685923300005844Switchgrass RhizosphereVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEKKEEAVIT*
Ga0068862_10065197713300005844Switchgrass RhizosphereSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT*
Ga0081539_10000886423300005985Tabebuia Heterophylla RhizosphereVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLEPLDNTASQEEKEEAVIT*
Ga0081539_1047943013300005985Tabebuia Heterophylla RhizosphereVRPATGRVGSYAEVLAASMSQSSLSRLVECLLEPAVNTSAQEEKMEQEEAVIT*
Ga0082029_130158853300006169Termite NestRKRLRSQRSSLRAQHHPPKDGSNGDVRPVTGRVGSYAEVLAVSMSQSSLSRLVECLLEPANADTPTQEESIEREEAVIT*
Ga0079220_1126902823300006806Agricultural SoilRVGSFAEVLANVSMSQSSLSKLVECLLEPIANTSGQEEQEEAVIT*
Ga0079220_1147486713300006806Agricultural SoilPKDGSNNDVSPATGFGSYAEIFANVSMSQSSLSRLVECLLEPVNTSAPEEESIKREEAVIT*
Ga0075430_10082990013300006846Populus RhizosphereKDGSNGDVRPATGRIGSYAEVLAISMSQSSLSRLVECLLEPANTDTPTQEESIEREEAVIT*
Ga0075433_1104039623300006852Populus RhizosphereMRSQRSSLRAQHHPPTDGSNGDARSAPSRVGSFAEVLANVSMNQSSLSRLVECLLEPVEGTALQDETMEQEEAVIT*
Ga0075433_1191460823300006852Populus RhizosphereHHPPKDGSNGDVRSAPGRVGSFAEVLANVSMNQSSLSRLVECLLEPVDDTPSHAETMEQEEAVIT*
Ga0079215_1057648313300006894Agricultural SoilRAQHHPPKDGSNGEVSPTTNRVGSYAEVLANVSMSQSSLSRLVECLLEPVSTNAPSQDESIEREEAVIT*
Ga0105240_1110849223300009093Corn RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQG
Ga0105240_1196144213300009093Corn RhizosphereSLRAQDHPPKHGSSGYVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT*
Ga0105247_1012967823300009101Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTSGQEEQEEAVIT*
Ga0105247_1050391623300009101Switchgrass RhizosphereVRPAASRVGSFAEVFANVSMSQSSLSKLVECLLEPVANTTPQEEQEEAVIT*
Ga0105247_1052249623300009101Switchgrass RhizosphereQRSSLRAQHHPPKDGSNDDVRSARSRVGSFAEVLANVSMSQGSLSRLVECLLEPADNTPSHAETMEQEEAVIT*
Ga0114129_1055884923300009147Populus RhizosphereLRSQRSTLRAQHHPPKDGSNRSVSPPTVRVGSYAEILANVSMSQSSLSRLVECLLEPVNTMAPGDDSIERDEAVIT*
Ga0105243_1283658813300009148Miscanthus RhizosphereDVRPATGRVGSYAEVLALSMSQSSLSRLVECLLEPANTDTPTQEESIEREEAVIT*
Ga0105241_1015814313300009174Corn RhizosphereSYAEVLANVSMNQSSLSRLVECLLEPVDNTPSHAETMEQEEAVIT*
Ga0105241_1085408123300009174Corn RhizosphereTGRVGSYAEVLANVSMNQSSLSRLVECLLEPVSNTPSQEEKMEQEEAVIT*
Ga0105237_1102237913300009545Corn RhizosphereHGSSGYVRPAAGRVGSFAEVLANVSISQSSLSKLVECLLDSADTSSQEEKEEAVIT*
Ga0126305_1027504213300010036Serpentine SoilPAAGRSYAEVLAVSMSQGSLSRLVECLLEPPGANTSRQENSMEREEAVIT*
Ga0126308_1033533713300010040Serpentine SoilPPKDGSNGDVSPAAGRVGSYAEVLANVSMNQSSLSRLVECLLGPVHTHTASPDESIEREEAVIT*
Ga0126308_1078805823300010040Serpentine SoilDPPKHGSSGDVRPAPSRVGSFAEVLANVSMSQSSLSKLVECLLEPVSNTPSQEEKEEAVIT*
Ga0126308_1088814213300010040Serpentine SoilRSSLRAQDHPPKYGSSGYVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEKKGEAVIT*
Ga0126310_1178090113300010044Serpentine SoilANVSMSQSSLSKLVECLLEPVANTPSQEQKEEAAIT*
Ga0126384_1037556823300010046Tropical Forest SoilGSYAEVLANISMSQSSLSRLVECLLEPARPNTTSQEQSMEQEEAVIT*
Ga0126382_1189505213300010047Tropical Forest SoilTGRVGSFAEVLANVSINQSSLSRLVECLLDPVANTPTQDQMEQEEAVIT*
Ga0126306_1163304813300010166Serpentine SoilSLRAQHHPPKHGSSADVRPAAGHIGSFAEVLANISMSQSSLSKLVECLLEPVANTPSQEQKEEAAIT*
Ga0126376_1191386823300010359Tropical Forest SoilVHPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTPAQEEQEEAVIT*
Ga0134124_1002091313300010397Terrestrial SoilRSSLRAQDHPPKDGSNDDVRSAPNRVGSFAEVLANVSMSQSSLSRLVECLLEPADNTPSHAETMEQEEAAIT*
Ga0134124_1005908813300010397Terrestrial SoilRRLRSQRSSLRAQDHPPKHGSSGYVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT*
Ga0134124_1101727223300010397Terrestrial SoilVRPAPSSVGSFAEVFANVSMSQSSLSKLVECLLDPVANTPAQEEKEEAVIT*
Ga0134127_1209179513300010399Terrestrial SoilLRSQRSSLRAQHHPPKHGSSGDVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLEPVASTSSQEEKEEAVIT*
Ga0134122_1105835823300010400Terrestrial SoilVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDPVASTTSQE
Ga0134123_1066057023300010403Terrestrial SoilRSQRSSLRAQHHPPKDGSNGDVRSAPSRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT*
Ga0157333_101665823300012484SoilVRPATSRVGSFAEVLANVSMSQSSLAKLVECLLEPVANTSGQEEQEEAVIT*
Ga0126375_1031892713300012948Tropical Forest SoilQRSSLRAQHHPPKIGGDVRPAAGRVGSYAEVLANLSMSQSSLSRLVECLLEPAGNTASQEETMEQEEAVIT*
Ga0164300_1069401713300012951SoilRRMRSQRSSLRAQHHPPKDGSNGDVRSAPSRVGSFAEVLANVSMNQSSLSKLVECLLEPVDNTPSQRETMEQEEAVIT*
Ga0157375_1144402613300013308Miscanthus RhizosphereRTQHHPPKHGSSGDVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTTPQEEQGEAVIT*
Ga0157375_1226166513300013308Miscanthus RhizosphereRTQHHPPKHGSSGDVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTTPQEEQGVAVIT*
Ga0157380_1046509023300014326Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVADTSGQEEQEEAVIT*
Ga0157380_1350154813300014326Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVASTPSQDEKEEAVIT*
Ga0182008_1055592913300014497RhizosphereVRPAASRVGSFAEVLANVSMSQSSLAKLVECLLEPVANTSGQEEQEE
Ga0182008_1067592323300014497RhizosphereVSPATGVGSYAEIFANVSMSQSSLSRLVECLLEPVNTSDPGEESIEREEAVIT*
Ga0182007_1009020423300015262RhizosphereVRPAASRVGSFAEVLANVSMSQSSLAKLVECLLEPVANTSGQEEQEEAGIT*
Ga0132256_10182091423300015372Arabidopsis RhizosphereVRPATSRVGSFAEVLANVSMSQSSLAKLVECLLDPVANTSGQEEQEEAVIT*
Ga0132257_10379499013300015373Arabidopsis RhizosphereRSQRSSLRAQHHPPKHGSSGDVRPTASSVGSFAEVFANVSMNQSSLSRLVECLLEPVNSTPRQEEMMDQEEAVIT*
Ga0132255_10260304423300015374Arabidopsis RhizosphereVHPAASRVGSFAEVFANVSMSQSSLSKLVECLLEPVANTTPQEEQEEAVIT*
Ga0190270_1304942113300018469SoilSQRSTLRAQHHPPTDGSNGVTSLTAGRVGSYAEVLANSMNQSSLSRLVECLLEPANTHADEESLEREEAVIT
Ga0190274_1060968513300018476SoilIHGSSGDVRPAPSRVGSFAEVFANVSMSQGSLSKLVECLLEPAANTSSQEQTLEQQEEAVIT
Ga0190274_1221398223300018476SoilVRPAHSRVGSFAEVLANVSMSQSSLSKLVECLLGSADTSS
Ga0207647_1043070723300025904Corn RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVASTPSQDEKEEAVIT
Ga0207645_1012655823300025907Miscanthus RhizosphereVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLEPIDNTASQEEKEEAVIT
Ga0207645_1042494723300025907Miscanthus RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQGEKEEAVIT
Ga0207643_1048289913300025908Miscanthus RhizosphereEVLANVSMSQSSLSKLVECLLDSADTSSQEKKEEAVIT
Ga0207643_1104445123300025908Miscanthus RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTTPQEEQGEAVIT
Ga0207657_1038861823300025919Corn RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTSVQDEKEEAVIT
Ga0207681_1163534523300025923Switchgrass RhizosphereVLANVSMSQSSLSKLVECLLDPADTSSQEKKEEAVIT
Ga0207644_1111324523300025931Switchgrass RhizosphereAQDHPPKHGSSGYVRPAASRVGSFAEVLANVSMSQSSLSKLVERLLDASSQEEKEEAVIT
Ga0207709_1086800323300025935Miscanthus RhizosphereRAQDHPPKHGSSGYVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSVDTSSQGEKEEAVIT
Ga0207670_1131445923300025936Switchgrass RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEKKEEAVIT
Ga0207704_1184368613300025938Miscanthus RhizosphereVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEEKEEAVIT
Ga0207679_1103925113300025945Corn RhizosphereGPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDTSSQEEKEEAVIT
Ga0207658_1211256023300025986Switchgrass RhizosphereVVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLDPVASTTSQEEKEEAVIT
Ga0207639_1064824013300026041Corn RhizosphereNYGSSGDVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTSGQE
Ga0207678_1054377823300026067Corn RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVDNTPSQEEKEEAVIT
Ga0207702_1245919713300026078Corn RhizosphereYAEVLANVSMSQSSLSRLVECLLEPARPNTISQDASVEQEEAVIT
Ga0207641_1239292723300026088Switchgrass RhizosphereVRPAASRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEKKEEAVIT
Ga0207648_1094324113300026089Miscanthus RhizosphereVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLDPIDN
Ga0207698_1011949613300026142Corn RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPVNTPSQEEKEEAVIT
Ga0207698_1233796923300026142Corn RhizosphereSSLRAQHHPPKHGSSGDVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLEPIDNTASQEEKEEAVIT
Ga0209177_1015750013300027775Agricultural SoilSRVGSFAEVLANVSMSQSSLSKLVECLLEPVANTSGQEEQEEAVIT
Ga0268240_1008288823300030496SoilVRPAARRVGSFAEVLANVSMSQSSLSKLVECLLEPIDNTA
Ga0268255_1015736623300030516AgaveSLRAQHHPPKHGSNGDVRPAPGRVGSFAEVFANVSMSQSSLSRLVECLLEPVANTPSQEEKEEAVIT
Ga0307408_10006392423300031548RhizosphereVRPAAGRVGSFAEVLANVSMSQSSLSKLVECLLEPAANTASQEQTMEQEEAVIT
Ga0307408_10162915913300031548RhizosphereVGSYAEVLAVSMSQSSLSRLVECLLEPASSNTASRDESTEREEAVIT
Ga0310813_1224249213300031716SoilSFAEVLANVSMSQSSLSKLVECLLEPVANTPSQERTMEQEEAVIT
Ga0307469_1144963423300031720Hardwood Forest SoilSFAEVLANVSMSQSSLSKLIECLLEPVANAPSQEQTMEQEEAVIT
Ga0307468_10130781323300031740Hardwood Forest SoilDGSNGDMRPANGRVGSYAEILANVSLNQSSLSRLVECLLEPVSNTPSQEEMMEQGEAVIT
Ga0308174_1168076413300031939SoilFAEVLANVSMSQSSLSKLIECLLEPVAATPSQEEKEEAVIT
Ga0307416_10349967213300032002RhizosphereEVLANVSMSQSSLSKLVECLLEPAANTASQEQTMEQEEAVIT
Ga0307414_1073367723300032004RhizosphereSTLRAQHHPPKDGSNGDVSPAAGRVGSYAEVLANVSMSQSSLSRLVECLLGPANTNTPPPEESIEREEAVIT
Ga0307411_1148322213300032005RhizosphereKDGSNGDVSPAAGRVGSYAEVLANVSMSQSSLSRLVECLLGPANTNTPPPEESIEREEAVIT
Ga0310902_1109265213300032012SoilGRVGSFAEVLANVSMSQSSLSKLVECLLDSADTSSQEKMKRP
Ga0310899_1072768823300032017SoilPKDGSNGDAHSAPRRVGSFAEVLANVSMNQSSLSRLVECLLEPVDNTSAQHETMEQEEAVIT
Ga0310812_1003669813300032421SoilVGSYAEVLANFSISQSSLSRLVECLLEPARPNTIAQDASMEQEEAAIT
Ga0310812_1039957013300032421SoilVGSFAEVLANVSMSQSSLSKLVECLLEPVANTPSQERTMEQEEAVIT
Ga0310810_1067750533300033412SoilMSQSSLSKLVECLLEPVANTPSQERTMEQEEAVIT
Ga0373948_0087569_11_1453300034817Rhizosphere SoilVGSFAEVLANVSMSQSSLSKLVECLLEPVADTSGREEKEEAVIT


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.