Metagenome / Metatranscriptome Family F070957

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070957
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	56 residues
Representative Sequence	MMTAYVAARLNARPVSTGSRIRAATFRLAHIVTERKKRRVMLARQPNGPLNDTVAALG
Number of Associated Samples	82
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.77 %
% of genes near scaffold ends (potentially truncated)	38.52 %
% of genes from short scaffolds (< 2000 bps)	80.33 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.016 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.984 % of family members)
Environment Ontology (ENVO)	Unclassified (58.197 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.279 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.16% β-sheet: 0.00% Coil/Unstructured: 48.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF14534	DUF4440	11.48
PF13467	RHH_4	10.66
PF04392	ABC_sub_bind	4.92
PF03401	TctC	4.10
PF13474	SnoaL_3	3.28
PF13414	TPR_11	2.46
PF13545	HTH_Crp_2	1.64
PF00126	HTH_1	1.64
PF00011	HSP20	0.82
PF08734	GYD	0.82
PF01068	DNA_ligase_A_M	0.82
PF13328	HD_4	0.82
PF02518	HATPase_c	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.10
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.82
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.82
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.02 %
Unclassified	root	N/A	40.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.02 %
Unclassified	root	N/A	40.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.02 %
Unclassified	root	N/A	40.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.59 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.20 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.64 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.64 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.92 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.64 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.82 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.92 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.64 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.82 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02IHMPU	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10074734	All Organisms → cellular organisms → Bacteria → Proteobacteria	855	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10016063	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10033687	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300004633\|Ga0066395_10172319	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300005167\|Ga0066672_10156264	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300005173\|Ga0066822_1010450	Not Available	599	Open in IMG/M
3300005332\|Ga0066388_100112064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3226	Open in IMG/M
3300005332\|Ga0066388_101746753	Not Available	1103	Open in IMG/M
3300005332\|Ga0066388_103959018	Not Available	755	Open in IMG/M
3300005332\|Ga0066388_104024197	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005332\|Ga0066388_108461829	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300005363\|Ga0008090_10029611	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300005363\|Ga0008090_10038995	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300005363\|Ga0008090_10071413	All Organisms → cellular organisms → Bacteria → Proteobacteria	2076	Open in IMG/M
3300005363\|Ga0008090_10081664	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300005363\|Ga0008090_10103008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1864	Open in IMG/M
3300005536\|Ga0070697_102038652	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300005552\|Ga0066701_10044720	All Organisms → cellular organisms → Bacteria	2398	Open in IMG/M
3300005552\|Ga0066701_10708136	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005559\|Ga0066700_10154508	Not Available	1557	Open in IMG/M
3300005559\|Ga0066700_10836562	Not Available	617	Open in IMG/M
3300005713\|Ga0066905_100207912	Not Available	1469	Open in IMG/M
3300005713\|Ga0066905_100356755	Not Available	1170	Open in IMG/M
3300005713\|Ga0066905_101940144	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300005764\|Ga0066903_100064107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4627	Open in IMG/M
3300005764\|Ga0066903_101160340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1430	Open in IMG/M
3300005764\|Ga0066903_101691183	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300006852\|Ga0075433_11889687	Not Available	512	Open in IMG/M
3300009100\|Ga0075418_10606535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1178	Open in IMG/M
3300009137\|Ga0066709_101061475	Not Available	1189	Open in IMG/M
3300010048\|Ga0126373_10926225	Not Available	936	Open in IMG/M
3300010048\|Ga0126373_11730402	Not Available	689	Open in IMG/M
3300010359\|Ga0126376_10941729	Not Available	858	Open in IMG/M
3300010360\|Ga0126372_10443542	Not Available	1200	Open in IMG/M
3300010361\|Ga0126378_10348404	Not Available	1590	Open in IMG/M
3300010361\|Ga0126378_12955219	Not Available	542	Open in IMG/M
3300010376\|Ga0126381_100510091	Not Available	1698	Open in IMG/M
3300010398\|Ga0126383_10517395	Not Available	1254	Open in IMG/M
3300012202\|Ga0137363_10029637	All Organisms → cellular organisms → Bacteria → Proteobacteria	3768	Open in IMG/M
3300012202\|Ga0137363_10171990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1718	Open in IMG/M
3300012205\|Ga0137362_10251213	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300012948\|Ga0126375_10711506	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300012958\|Ga0164299_11664030	Not Available	505	Open in IMG/M
3300012971\|Ga0126369_13178732	Not Available	538	Open in IMG/M
3300016270\|Ga0182036_10157999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1622	Open in IMG/M
3300016270\|Ga0182036_10306189	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300016294\|Ga0182041_10468758	Not Available	1086	Open in IMG/M
3300016294\|Ga0182041_10623560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	949	Open in IMG/M
3300016357\|Ga0182032_10188459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1560	Open in IMG/M
3300016371\|Ga0182034_11447924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300016387\|Ga0182040_10168859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1579	Open in IMG/M
3300016404\|Ga0182037_10671938	Not Available	885	Open in IMG/M
3300021560\|Ga0126371_10107755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2788	Open in IMG/M
3300025922\|Ga0207646_10015641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7155	Open in IMG/M
3300027646\|Ga0209466_1128235	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300027748\|Ga0209689_1439811	Not Available	500	Open in IMG/M
3300027874\|Ga0209465_10029306	All Organisms → cellular organisms → Bacteria	2586	Open in IMG/M
3300027874\|Ga0209465_10492742	Not Available	612	Open in IMG/M
3300031543\|Ga0318516_10073232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1902	Open in IMG/M
3300031543\|Ga0318516_10195259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1168	Open in IMG/M
3300031543\|Ga0318516_10734975	Not Available	559	Open in IMG/M
3300031544\|Ga0318534_10215283	Not Available	1109	Open in IMG/M
3300031545\|Ga0318541_10750946	Not Available	544	Open in IMG/M
3300031546\|Ga0318538_10168337	Not Available	1163	Open in IMG/M
3300031546\|Ga0318538_10400576	Not Available	742	Open in IMG/M
3300031564\|Ga0318573_10053346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1980	Open in IMG/M
3300031564\|Ga0318573_10120168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1362	Open in IMG/M
3300031572\|Ga0318515_10017166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3369	Open in IMG/M
3300031573\|Ga0310915_11130459	Not Available	543	Open in IMG/M
3300031573\|Ga0310915_11226197	Not Available	518	Open in IMG/M
3300031668\|Ga0318542_10389281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300031679\|Ga0318561_10238938	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300031680\|Ga0318574_10088695	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300031681\|Ga0318572_10061068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2056	Open in IMG/M
3300031681\|Ga0318572_10770193	Not Available	572	Open in IMG/M
3300031682\|Ga0318560_10320109	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300031713\|Ga0318496_10782307	Not Available	526	Open in IMG/M
3300031719\|Ga0306917_10318884	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300031719\|Ga0306917_10386369	All Organisms → cellular organisms → Bacteria → Proteobacteria	1091	Open in IMG/M
3300031744\|Ga0306918_10019534	All Organisms → cellular organisms → Bacteria → Proteobacteria	4081	Open in IMG/M
3300031744\|Ga0306918_10058352	All Organisms → cellular organisms → Bacteria	2597	Open in IMG/M
3300031744\|Ga0306918_10099774	Not Available	2064	Open in IMG/M
3300031744\|Ga0306918_10694389	Not Available	796	Open in IMG/M
3300031751\|Ga0318494_10107433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1544	Open in IMG/M
3300031763\|Ga0318537_10004775	All Organisms → cellular organisms → Bacteria	4408	Open in IMG/M
3300031763\|Ga0318537_10134164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300031770\|Ga0318521_10336072	Not Available	893	Open in IMG/M
3300031779\|Ga0318566_10124515	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300031780\|Ga0318508_1253917	Not Available	505	Open in IMG/M
3300031797\|Ga0318550_10022507	All Organisms → cellular organisms → Bacteria	2632	Open in IMG/M
3300031797\|Ga0318550_10308513	Not Available	767	Open in IMG/M
3300031805\|Ga0318497_10045030	All Organisms → cellular organisms → Bacteria	2257	Open in IMG/M
3300031805\|Ga0318497_10105852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1513	Open in IMG/M
3300031819\|Ga0318568_10759795	Not Available	602	Open in IMG/M
3300031831\|Ga0318564_10247847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	790	Open in IMG/M
3300031833\|Ga0310917_10096934	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300031833\|Ga0310917_10332645	Not Available	1030	Open in IMG/M
3300031833\|Ga0310917_10349438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1003	Open in IMG/M
3300031835\|Ga0318517_10105756	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300031879\|Ga0306919_10598784	Not Available	850	Open in IMG/M
3300031893\|Ga0318536_10263761	Not Available	875	Open in IMG/M
3300031910\|Ga0306923_10267997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1953	Open in IMG/M
3300031910\|Ga0306923_10657831	Not Available	1171	Open in IMG/M
3300031912\|Ga0306921_10124040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3011	Open in IMG/M
3300031942\|Ga0310916_10088710	All Organisms → cellular organisms → Bacteria	2461	Open in IMG/M
3300031942\|Ga0310916_11072195	Not Available	670	Open in IMG/M
3300031945\|Ga0310913_10155070	All Organisms → cellular organisms → Bacteria → Proteobacteria	1585	Open in IMG/M
3300031947\|Ga0310909_10120448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2130	Open in IMG/M
3300031947\|Ga0310909_10175812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1770	Open in IMG/M
3300032010\|Ga0318569_10433330	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300032035\|Ga0310911_10381077	Not Available	815	Open in IMG/M
3300032039\|Ga0318559_10173271	Not Available	986	Open in IMG/M
3300032051\|Ga0318532_10201534	Not Available	706	Open in IMG/M
3300032055\|Ga0318575_10122463	Not Available	1277	Open in IMG/M
3300032059\|Ga0318533_10395103	Not Available	1009	Open in IMG/M
3300032066\|Ga0318514_10092320	Not Available	1526	Open in IMG/M
3300032076\|Ga0306924_10018103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7419	Open in IMG/M
3300032089\|Ga0318525_10157839	Not Available	1165	Open in IMG/M
3300032261\|Ga0306920_100208606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2915	Open in IMG/M
3300032261\|Ga0306920_101100982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1152	Open in IMG/M
3300033289\|Ga0310914_10057234	All Organisms → cellular organisms → Bacteria → Proteobacteria	3237	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.36%
Host-Associated	Host-Associated	1.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.36%
Plants	Host-Associated → Plants	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.43%
Loam	Environmental → Terrestrial → Soil → Loam	13.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.30%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.56%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	4.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	40.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	4.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_09795530	2170459003	Grass Soil	VTARLNARPVSTGSRIPAATFRLAHIVRERKKRRVMIARQPHGPLNDTVAARG
AF_2010_repII_A1DRAFT_100747343	3300000597	Forest Soil	MTAYVAAPLNARPVTTGSRIRAATFRLAHIVRKRQKRRVVLARQLNGPLNDTVAALG*
AF_2010_repII_A001DRAFT_100160632	3300000793	Forest Soil	MMMAYVAARLNARPVSTGSRIRAATSRLAHIVRERKKRRVMLARQPNGPLNDTAAALG*
AF_2010_repII_A001DRAFT_100336874	3300000793	Forest Soil	MMTAYVAASLNARPVTTGSRIRAATFRLAHIVRKRQKRRVVLARQLNGPLNDTVAALG*
Ga0066395_101723191	3300004633	Tropical Forest Soil	MTAYVAASLNARPVTTGSRIRAATYRLAHIVRKRQKRRVVLARQPNGPLNDTVAALG*
Ga0066672_101562642	3300005167	Soil	MMTAYVTARLNARPVSTGSRIPAATFRLAHIVRERKKRRVMIARQPHGPLNDTVAALG*
Ga0066822_10104502	3300005173	Soil	MMTAYVAARLNAHPVSIGSRIRAATFRRARVVTERKKRRVMLARQPNEPLNDTVAALG*
Ga0066388_1001120645	3300005332	Tropical Forest Soil	MMAYVAARLNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPFDDMVAALG*
Ga0066388_1017467532	3300005332	Tropical Forest Soil	MMTAYVAAGLNARPVSTGSRIRAATFRLAHVVTERKKHRIMHARQPNGPLNDTVAALG*
Ga0066388_1039590181	3300005332	Tropical Forest Soil	MMTAYVATRLNARSASTGSRIRAATFRLAHIVTERKERRVMLARRPNGPLNDTVAALG*
Ga0066388_1040241972	3300005332	Tropical Forest Soil	MTAYVAARLNARPVSTGSRIRAATFRLAHIVRERKKHRVMLARQPNWRLNDTVAALG*
Ga0066388_1084618291	3300005332	Tropical Forest Soil	MMTAYVATRLNARPVSTGSRIRAATFRLTHIVRERKKHRVMLARQSNGPLNDTVAALG*
Ga0008090_100296112	3300005363	Tropical Rainforest Soil	MMTAYVAARLNARPVSTGSRIRAATFRLAHIVRERKKHRVMLARQPNWRLNDTVAALG*
Ga0008090_100389955	3300005363	Tropical Rainforest Soil	MMMAYVAARRNARPVSTGSRIRAATSRLAHIVRQRKKRRVMLARQPNGPLNDTAAALG*
Ga0008090_100714133	3300005363	Tropical Rainforest Soil	MMTAYVAARLNARPVSTGSRIRAATFRPAHIVRERKRRRLMLARQPDGPLNDTVAALG*
Ga0008090_100816644	3300005363	Tropical Rainforest Soil	MMTAYVAAPLNARPVTTGSRIRAATFRLAHIVRKRQKRRVVLARQLNGPLNDTVAALG*
Ga0008090_101030083	3300005363	Tropical Rainforest Soil	MMMAYVAARLNARPVSTGSRIRAATFRLAHIVRERKKRRVVLARQPNGPLNDTAAALG*
Ga0070697_1020386522	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	YVAARLNAHPVSIGSRIRAATFRLAHIVRERKKHRVMLARQPNGRLNDTVAALG*
Ga0066701_100447201	3300005552	Soil	MTAYVAARLNAHPVSIGSRIRAATFRLAHIVRERKKHRVMLARQPNWRLNDTVATLG*
Ga0066701_107081361	3300005552	Soil	LNARPVSTGSRIPAATFRLAHIVRERKKRRVMIARQPHGPLNDTVAALG*
Ga0066700_101545085	3300005559	Soil	MTAYVAARLNPRPVSTGSRTRAATFRLAHIVTERKKRRVMLARQPSGPLNDTVAA
Ga0066700_108365622	3300005559	Soil	MTAYVTARLNARPVSTGSRIPAATFRLAHIVRERKKRRVMIARQPHGPLNDTVAALG*
Ga0066905_1002079124	3300005713	Tropical Forest Soil	MTAYVAARLNARPVSTGSRIRAATFRLAHIVTERKKRRVMLARQPNGPLNDTVAALG*
Ga0066905_1003567552	3300005713	Tropical Forest Soil	MMTAYEAARPNARPGSTGSRIRAATFRPTHIVRERKKRRVMLARQPNGPLNDTVAALG*
Ga0066905_1019401441	3300005713	Tropical Forest Soil	MTAHVAARLNARPISTGSRIRVATLRLAHIVRERKKHRVMPARQPNGPLNDTVAALG*
Ga0066903_1000641071	3300005764	Tropical Forest Soil	MMMAYVAARLNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPFDDMVAALG*
Ga0066903_1011603402	3300005764	Tropical Forest Soil	MTAYVAARRNARPVSTGSRIRAATFRPAHIVRERQKRRVMLARQPNGPFNDTVAALG*
Ga0066903_1016911832	3300005764	Tropical Forest Soil	MITAYVADRPNARPISTGSRIRVATFRLAHIVRERKRHRVMPARQPNGPLKDTVAALG*
Ga0075433_118896871	3300006852	Populus Rhizosphere	QVMMTAYVAARLNPRPVSTGSRTRAATFRLAHIVTERKKRRVMLARQPSGPLNDTVAALG
Ga0075418_106065351	3300009100	Populus Rhizosphere	MMTAYVAARLNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPLNDMVATLG*
Ga0066709_1010614751	3300009137	Grasslands Soil	MMTAYVAAGPNAWPVSTGSRIRAAIPRLAHIVKECQKPRATFTRQPIGPFNGAVAARD*
Ga0126373_109262251	3300010048	Tropical Forest Soil	MMMAYVAARLNAHPVSTGSRIRAATFRLAHIVRERKKRRVMLARQPNGPLNDTAAALG*
Ga0126373_117304022	3300010048	Tropical Forest Soil	QVMMTAYVATRLNARSASTGSRIRAATFRLAHIVTERKERRVMLARRPNGPLNDTVAALG
Ga0126376_109417292	3300010359	Tropical Forest Soil	MMMAYVAARLNARPVSTGSRIRAATFRLAHVVRERKKRRVMLARQPNGPLNDTVAALG*
Ga0126372_104435421	3300010360	Tropical Forest Soil	MMMAYVAARFNARPVSTGSRIRAATSRLAHIVRERKKRRVMLARQPNGPLNDTAAALG*
Ga0126378_103484041	3300010361	Tropical Forest Soil	MMAYVAARLNARPVSAGSRIRAATFRLAHVVTERKKRPVMLARQPSGPLKVTALG*
Ga0126378_129552191	3300010361	Tropical Forest Soil	MMTAYVAARPNARPVSTGSRIRAATFRPTHILRERKKRRVMLARQPNGPLNDTVAALG*
Ga0126381_1005100914	3300010376	Tropical Forest Soil	MMMAYVAARLNARPVSTGSRIRAATFRLAHVVTERKKRPVMLARQPSGPLKVTALG*
Ga0126383_105173951	3300010398	Tropical Forest Soil	MMTAYVAARLNARPVSTGSRIRAATFRPAHIVRERQKRRVMLARQPNGPFNDTVAALG*
Ga0137363_100296378	3300012202	Vadose Zone Soil	MMMAYVAARLNARPVSTGSRIRAATFRRARVVTERKKRRVMLARQPNEPLNDTVAALG*
Ga0137363_101719901	3300012202	Vadose Zone Soil	MMMAYVAARLNARPVSTGSRIRAATFRLAHIVRERKKRRVMIARQPHGPLNDTVAALG*
Ga0137362_102512133	3300012205	Vadose Zone Soil	KQVMMTAYVTARLNARPVSTGSRIPAATFRLAHIVRERKKRRLMIARQPHGPLNDTVAALG*
Ga0126375_107115062	3300012948	Tropical Forest Soil	MMTAYVAASLNARPVTTGSRIRAATYRLAHIVRKRQKRRVVLARQPNGPLNDTV
Ga0164299_116640301	3300012958	Soil	MMTAYVAARLNAHPVSIGSRIRAATFRLAHIVRERKKHRVMLARQPNWRLNDT
Ga0126369_131787322	3300012971	Tropical Forest Soil	GRQVIMTAYVAARRNARPVSTGSRIRAATFRPAHIVRERQKRRVMLARQPNGPFNDTVAALG*
Ga0182036_101579993	3300016270	Soil	MTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPL
Ga0182036_103061892	3300016270	Soil	KQVMMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVL
Ga0182041_104687582	3300016294	Soil	ARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0182041_106235601	3300016294	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRECKKRRVMLARQPDGPLNDKVAALG
Ga0182032_101884591	3300016357	Soil	VAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0182034_114479242	3300016371	Soil	MMTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTV
Ga0182040_101688591	3300016387	Soil	MMTAYVAVRLNARPVSIGSRIRAVTFRLAHLVRERKERRVMIALQPNGPLNGTVPALG
Ga0182037_106719382	3300016404	Soil	MTACVAARLNARSVSTGSRIRAATFRLANIVTERKKRRVMLARQPNGP
Ga0126371_101077552	3300021560	Tropical Forest Soil	MTAYVAARRNARPVSTGSRIRAATFRPAHIVRERQKRRVMLARQPNGPFNDTVAALG
Ga0207646_100156418	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTAYVAARLNPRPVSTGSRTRAATFRLAHIVTERKKRRVMLARQPSGPLNDTVAALG
Ga0209466_11282352	3300027646	Tropical Forest Soil	MMTAYVAARLNARPVSTGSRIRAATFRLAHIVTERKKRRVMLARQPNGPLNDTVAALG
Ga0209689_14398111	3300027748	Soil	MTAYVTARLNARPVSTGSRIPAATFRLAHIVRERKKRRVMIARQPHGPLNDTVAALG
Ga0209465_100293061	3300027874	Tropical Forest Soil	MTAYVAASLNARPVTTGSRIRAATYRLAHIVRKRQKRRVVLARQPNGPLNDTVAALG
Ga0209465_104927421	3300027874	Tropical Forest Soil	MTAYVATRLNARSASTGSRIRAATFRLAHIVTERKKRRVMLARRPNGPLNDTVAALG
Ga0318516_100732322	3300031543	Soil	MMTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVAALD
Ga0318516_101952591	3300031543	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPDGPLNDKVAALG
Ga0318516_107349752	3300031543	Soil	MMMAYVAAHLNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPLNDMVAALG
Ga0318534_102152831	3300031544	Soil	MMTACVAARLNARSVSTGSRIRAATFRLANIVTERKKRRVMLARQPNGPVNDTVEALG
Ga0318541_107509461	3300031545	Soil	MTAYVATRLNARSASTGSRIRAATFRLAHIVTERKERRVMLARRPNGPLNDTVAALG
Ga0318538_101683372	3300031546	Soil	MMAYVAAHLNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPLNDMVAALG
Ga0318538_104005761	3300031546	Soil	MTAYVAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0318573_100533461	3300031564	Soil	MTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVASLG
Ga0318573_101201682	3300031564	Soil	MMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERKKRRVMLARQPNGPLNDTGAALG
Ga0318515_100171663	3300031572	Soil	MTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVAALD
Ga0310915_111304591	3300031573	Soil	MMMAYVAAHLNARPVSTGSRIRAATFRPAHVVTERKKRRVMLARQPSGPLNDTVAALG
Ga0310915_112261971	3300031573	Soil	MMTAYLAARLNARPVSTGSLIRAATFRPTHIVRERKKRRVMLARQPNGPLNDTVAALG
Ga0318542_103892812	3300031668	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPNGPLNDTLAALG
Ga0318561_102389381	3300031679	Soil	VMMTAYVAAPLNARPVTTGSRIRAATFRLAHIVRKRQKRRVVLARQPNGPLNDTVAALG
Ga0318574_100886951	3300031680	Soil	NARPVSTVSRIRAATVRLEHIVTERKKRRVMLARQPNGPLNDTGAALG
Ga0318572_100610683	3300031681	Soil	MMTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPDGPLDDTVA
Ga0318572_107701931	3300031681	Soil	VGKQVMMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0318560_103201091	3300031682	Soil	AARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVAALD
Ga0318496_107823071	3300031713	Soil	ARSVSTGSRIREATFRLANIVTERKKRRVMLARQPNGPVNDTVEALG
Ga0306917_103188841	3300031719	Soil	VMMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0306917_103863692	3300031719	Soil	MMTAYVAARLNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPNGPLNATVAALG
Ga0306918_100195348	3300031744	Soil	MTAYVAVRLNARPVSIGSRIRAATFRLAHLVRERKERRVMIALQPNGPLNGTVPALG
Ga0306918_100583523	3300031744	Soil	MTAYVAAPLNARPVTTGSRIRAATFRLAHIVRKRQKRRVVLARQPNGPLNDTVAALG
Ga0306918_100997743	3300031744	Soil	MTACVAARLNARSVSTGSRIRAATFRLANIVTERKKRRVMLARQPNGPVNDTVEALG
Ga0306918_106943892	3300031744	Soil	MMAYVAARLNARPVSTGSRIRAATFRLAHIVRERKKRRVMLARQPNGPLNDTAAALG
Ga0318494_101074333	3300031751	Soil	MTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDD
Ga0318537_100047752	3300031763	Soil	MMTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVASLG
Ga0318537_101341644	3300031763	Soil	VMMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPDGPLNDKVAALG
Ga0318521_103360722	3300031770	Soil	MMAYVAAHLNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPLNDMV
Ga0318566_101245151	3300031779	Soil	LNVRPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVAALD
Ga0318508_12539171	3300031780	Soil	LNARPVSTGSRIRAATFRLEHIVTECKKRRVMLARQPNEPLNDMVAALG
Ga0318550_100225077	3300031797	Soil	VMMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERKKRRVMLARQPNGPLNDTGAALG
Ga0318550_103085132	3300031797	Soil	AYVAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0318497_100450304	3300031805	Soil	MTAYVAARLNARPVSTVSRIRAATVRLEHIVTERKKRRVMLARQPNGPLNDTGAALG
Ga0318497_101058521	3300031805	Soil	MTAYVAAPLNARPVTTGSRIRAATFRLAHIVRKRRKRRVVLARQPNGP
Ga0318568_107597951	3300031819	Soil	MMTAYVAARLNARPVSTVSRIRAATFRLEHIVTERKKRRVMLAHQPNGPLNDTVAALG
Ga0318564_102478472	3300031831	Soil	MMTPYVAARLNARPVSTGSRIRAATFRLAHLVRERKERRVMIALQPNGPLNGTVPALG
Ga0310917_100969342	3300031833	Soil	MMTAYVAARLNPRPVSTGSRTRAATFRLAHIVTERKKRRVMLARQPNGPLNDTVAALG
Ga0310917_103326451	3300031833	Soil	NARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0310917_103494382	3300031833	Soil	MMTAYVATRLNARSASTGSRIRAATFRLAHIVTERKERRVMLARRPNGPLNDTVAALG
Ga0318517_101057561	3300031835	Soil	KVGKQVMMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERKKRRVMLARQPNGPLNDTGAALG
Ga0306919_105987841	3300031879	Soil	MMAYVAAGLNARPVTTGSRIRAATFRLAHIVRERKKRRVMLARQPNGPLNDTAAALG
Ga0318536_102637611	3300031893	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPNGPLNDTAAAPG
Ga0306923_102679974	3300031910	Soil	MTAYVAARLNPRPVSTGSRTRAATFRLAHIVTERKKRRVMLARQPNGPLNDTVAALG
Ga0306923_106578311	3300031910	Soil	VGKQVMMTAYVAARLNARPVSTVSRIRAATFRLEHIVTERKKRRVMLAHQPNGPLNDTVAALG
Ga0306921_101240406	3300031912	Soil	KQVMMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERKKRRVMLARQPNGPLNDTGAAL
Ga0310916_100887101	3300031942	Soil	MMTAYVAARLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0310916_110721951	3300031942	Soil	VATRLNARSASTGSRIRAATFRLAHIVTERKERRVMLARRPNGPLNDTVAALG
Ga0310913_101550702	3300031945	Soil	MMTAYVAVRLNARPVSIGSRIRAATFRLAHLVRERKERRVMIALQPNGPLNGTVPALG
Ga0310909_101204481	3300031947	Soil	MTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVA
Ga0310909_101758121	3300031947	Soil	MMTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNGPLDDTVA
Ga0318569_104333301	3300032010	Soil	ARPVTTGSRIRAATFRLAHIVRKRQKRRVVLARQPNGPLNDTVAALG
Ga0310911_103810771	3300032035	Soil	KQVMMMAYVAAGLNARPVTTGSRIRAATFRLAHIVRERKKRRVMLARQPNGPLNDTAAAL
Ga0318559_101732711	3300032039	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPDGPLND
Ga0318532_102015341	3300032051	Soil	LNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0318575_101224633	3300032055	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPNGPLNATVAALG
Ga0318533_103951031	3300032059	Soil	RLNARPVSTVSRIRAATVRLEHIVTERTKRRVMLARQPNGPLNDTGAVLG
Ga0318514_100923201	3300032066	Soil	MMTAYVAACPNARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPDGPLNDKVAA
Ga0306924_100181038	3300032076	Soil	MMAYVAAHLNARPVSTGSRIRAATFRPAHVVTERKKRRVMLARQPSGPLNDTVAALG
Ga0318525_101578392	3300032089	Soil	MTPYVAARLNARPVSTGSRIRAATFRLAHIVRERMKHRAMLARQPNG
Ga0306920_1002086067	3300032261	Soil	THEKVGKQVMMTAYVAVRLKARPVSTGSRIRAATFRPAHIVRERKKRRVMLARQPNGPLNDTLAALG
Ga0306920_1011009822	3300032261	Soil	MTAYVATRLNARPVSTGSRIRAATFRLTHIVRERKKRRVMLARQPNGPLNDTVAALG
Ga0310914_100572344	3300033289	Soil	MTAYVAVRLNSRPVSIGSRIRAATFRLAHLVRERKERRVMIALQPNGPLNGTVPALG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070957

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences