Metagenome / Metatranscriptome Family F071041

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071041
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	65 residues
Representative Sequence	MTVPALVGVKVTLQLEVVALTLARVHGDPVNEPVAVPPLVNATVPRGADAVPASEVSLTNPVQVM
Number of Associated Samples	36
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.69 %
% of genes near scaffold ends (potentially truncated)	52.46 %
% of genes from short scaffolds (< 2000 bps)	83.61 %
Associated GOLD sequencing projects	27
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (97.541 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (42.623 % of family members)
Environment Ontology (ENVO)	Unclassified (63.934 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.934 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.58% β-sheet: 0.00% Coil/Unstructured: 77.42%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07705	CARDB	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
All Organisms	root	All Organisms	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
cellular organisms	root	All Organisms → cellular organisms	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.64 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.54 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002908\|JGI25382J43887_10519754	Not Available	503	Open in IMG/M
3300005174\|Ga0066680_10080991	Not Available	1959	Open in IMG/M
3300005174\|Ga0066680_10412936	Not Available	856	Open in IMG/M
3300005174\|Ga0066680_10423848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	843	Open in IMG/M
3300005174\|Ga0066680_10513561	Not Available	753	Open in IMG/M
3300005174\|Ga0066680_10764065	Not Available	586	Open in IMG/M
3300005174\|Ga0066680_10766694	Not Available	584	Open in IMG/M
3300005174\|Ga0066680_10856171	Not Available	542	Open in IMG/M
3300005174\|Ga0066680_10856171	Not Available	542	Open in IMG/M
3300005176\|Ga0066679_10963656	Not Available	533	Open in IMG/M
3300005181\|Ga0066678_10345950	Not Available	980	Open in IMG/M
3300005447\|Ga0066689_10038961	Not Available	2483	Open in IMG/M
3300005447\|Ga0066689_10038961	Not Available	2483	Open in IMG/M
3300005447\|Ga0066689_10149933	Not Available	1386	Open in IMG/M
3300005552\|Ga0066701_10424381	Not Available	824	Open in IMG/M
3300005555\|Ga0066692_10104021	Not Available	1688	Open in IMG/M
3300005555\|Ga0066692_10133363	Not Available	1511	Open in IMG/M
3300005555\|Ga0066692_10511050	Not Available	764	Open in IMG/M
3300005557\|Ga0066704_10076544	Not Available	2163	Open in IMG/M
3300005557\|Ga0066704_10398351	Not Available	915	Open in IMG/M
3300005557\|Ga0066704_10543109	Not Available	758	Open in IMG/M
3300005557\|Ga0066704_10653346	Not Available	668	Open in IMG/M
3300005557\|Ga0066704_10686511	Not Available	647	Open in IMG/M
3300005568\|Ga0066703_10137063	Not Available	1464	Open in IMG/M
3300005568\|Ga0066703_10739531	Not Available	564	Open in IMG/M
3300005586\|Ga0066691_10027331	Not Available	2912	Open in IMG/M
3300005586\|Ga0066691_10103324	Not Available	1602	Open in IMG/M
3300005586\|Ga0066691_10235442	Not Available	1073	Open in IMG/M
3300005586\|Ga0066691_10341223	Not Available	887	Open in IMG/M
3300005586\|Ga0066691_10404442	Not Available	812	Open in IMG/M
3300005586\|Ga0066691_10777626	Not Available	565	Open in IMG/M
3300006797\|Ga0066659_10148230	Not Available	1665	Open in IMG/M
3300006797\|Ga0066659_10148230	Not Available	1665	Open in IMG/M
3300006797\|Ga0066659_10342728	Not Available	1156	Open in IMG/M
3300007258\|Ga0099793_10045218	Not Available	1925	Open in IMG/M
3300007258\|Ga0099793_10045218	Not Available	1925	Open in IMG/M
3300007258\|Ga0099793_10088632	Not Available	1420	Open in IMG/M
3300007258\|Ga0099793_10451907	Not Available	635	Open in IMG/M
3300007258\|Ga0099793_10484133	Not Available	614	Open in IMG/M
3300009012\|Ga0066710_100039848	Not Available	5650	Open in IMG/M
3300009012\|Ga0066710_100039848	Not Available	5650	Open in IMG/M
3300009012\|Ga0066710_100039848	Not Available	5650	Open in IMG/M
3300009012\|Ga0066710_100574007	Not Available	1708	Open in IMG/M
3300009038\|Ga0099829_11026189	Not Available	684	Open in IMG/M
3300009089\|Ga0099828_11011072	Not Available	740	Open in IMG/M
3300012096\|Ga0137389_11040090	Not Available	702	Open in IMG/M
3300012096\|Ga0137389_11040090	Not Available	702	Open in IMG/M
3300012189\|Ga0137388_10758820	Not Available	900	Open in IMG/M
3300012189\|Ga0137388_10976560	Not Available	782	Open in IMG/M
3300012189\|Ga0137388_11336119	Not Available	656	Open in IMG/M
3300012189\|Ga0137388_11741666	Not Available	556	Open in IMG/M
3300012203\|Ga0137399_10055284	Not Available	2904	Open in IMG/M
3300012203\|Ga0137399_10055284	Not Available	2904	Open in IMG/M
3300012203\|Ga0137399_10156160	Not Available	1827	Open in IMG/M
3300012203\|Ga0137399_10156160	Not Available	1827	Open in IMG/M
3300012203\|Ga0137399_10260548	Not Available	1424	Open in IMG/M
3300012203\|Ga0137399_10443796	Not Available	1085	Open in IMG/M
3300012203\|Ga0137399_10563417	Not Available	957	Open in IMG/M
3300012203\|Ga0137399_10709256	Not Available	847	Open in IMG/M
3300012203\|Ga0137399_10796591	Not Available	796	Open in IMG/M
3300012203\|Ga0137399_10824177	Not Available	781	Open in IMG/M
3300012203\|Ga0137399_11772245	Not Available	506	Open in IMG/M
3300012397\|Ga0134056_1055271	Not Available	535	Open in IMG/M
3300012918\|Ga0137396_10023173	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4017	Open in IMG/M
3300012918\|Ga0137396_10034856	Not Available	3359	Open in IMG/M
3300012918\|Ga0137396_10077377	Not Available	2336	Open in IMG/M
3300012918\|Ga0137396_10342995	Not Available	1105	Open in IMG/M
3300012925\|Ga0137419_11569967	Not Available	559	Open in IMG/M
3300012927\|Ga0137416_11018343	Not Available	740	Open in IMG/M
3300012927\|Ga0137416_11461357	Not Available	620	Open in IMG/M
3300012927\|Ga0137416_11836006	Not Available	554	Open in IMG/M
3300015241\|Ga0137418_10392012	Not Available	1135	Open in IMG/M
3300015241\|Ga0137418_10892053	Not Available	655	Open in IMG/M
3300018468\|Ga0066662_10088830	Not Available	2144	Open in IMG/M
3300018468\|Ga0066662_10088830	Not Available	2144	Open in IMG/M
3300018468\|Ga0066662_10113407	Not Available	1957	Open in IMG/M
3300018468\|Ga0066662_10742879	Not Available	943	Open in IMG/M
3300018468\|Ga0066662_10880852	Not Available	877	Open in IMG/M
3300018468\|Ga0066662_10890010	Not Available	873	Open in IMG/M
3300018468\|Ga0066662_10890010	Not Available	873	Open in IMG/M
3300018468\|Ga0066662_10948059	Not Available	848	Open in IMG/M
3300018468\|Ga0066662_11101390	Not Available	794	Open in IMG/M
3300018468\|Ga0066662_11315231	Not Available	742	Open in IMG/M
3300018468\|Ga0066662_11350954	Not Available	734	Open in IMG/M
3300018468\|Ga0066662_12426800	Not Available	552	Open in IMG/M
3300026296\|Ga0209235_1206237	Not Available	665	Open in IMG/M
3300026297\|Ga0209237_1148563	Not Available	915	Open in IMG/M
3300026298\|Ga0209236_1062823	Not Available	1794	Open in IMG/M
3300026298\|Ga0209236_1087992	Not Available	1423	Open in IMG/M
3300026298\|Ga0209236_1155350	Not Available	958	Open in IMG/M
3300026298\|Ga0209236_1158619	Not Available	942	Open in IMG/M
3300026313\|Ga0209761_1152990	Not Available	1086	Open in IMG/M
3300026313\|Ga0209761_1307141	Not Available	548	Open in IMG/M
3300026328\|Ga0209802_1039278	Not Available	2419	Open in IMG/M
3300026328\|Ga0209802_1043642	Not Available	2263	Open in IMG/M
3300026328\|Ga0209802_1051631	Not Available	2031	Open in IMG/M
3300026328\|Ga0209802_1056934	Not Available	1905	Open in IMG/M
3300026328\|Ga0209802_1140945	Not Available	1032	Open in IMG/M
3300026328\|Ga0209802_1145037	Not Available	1010	Open in IMG/M
3300026328\|Ga0209802_1149131	Not Available	988	Open in IMG/M
3300026332\|Ga0209803_1108391	Not Available	1127	Open in IMG/M
3300026334\|Ga0209377_1061107	Not Available	1649	Open in IMG/M
3300026334\|Ga0209377_1124315	Not Available	1029	Open in IMG/M
3300026529\|Ga0209806_1274377	Not Available	567	Open in IMG/M
3300026529\|Ga0209806_1292386	Not Available	547	Open in IMG/M
3300026532\|Ga0209160_1014601	Not Available	5534	Open in IMG/M
3300026532\|Ga0209160_1014601	Not Available	5534	Open in IMG/M
3300026532\|Ga0209160_1048789	Not Available	2469	Open in IMG/M
3300026532\|Ga0209160_1164996	Not Available	976	Open in IMG/M
3300026532\|Ga0209160_1199925	Not Available	762	Open in IMG/M
3300026532\|Ga0209160_1213066	Not Available	694	Open in IMG/M
3300026532\|Ga0209160_1338685	Not Available	515	Open in IMG/M
3300027643\|Ga0209076_1103427	Not Available	807	Open in IMG/M
3300027643\|Ga0209076_1104536	Not Available	803	Open in IMG/M
3300027875\|Ga0209283_10600658	Not Available	697	Open in IMG/M
3300028536\|Ga0137415_10274224	Not Available	1493	Open in IMG/M
3300028536\|Ga0137415_10274224	Not Available	1493	Open in IMG/M
3300028536\|Ga0137415_10373898	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300028536\|Ga0137415_10547681	Not Available	966	Open in IMG/M
3300028536\|Ga0137415_11189188	Not Available	577	Open in IMG/M
3300028536\|Ga0137415_11349034	Not Available	533	Open in IMG/M
3300028536\|Ga0137415_11349034	Not Available	533	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	63.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	42.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.07%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	20.49%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J43887_105197542	3300002908	Grasslands Soil	MIVPDAVGLNVTLQLDVVALTLAKVQGDPVNDPVAVPPLVNATVPRGAEAVPATEVSFTNPVXVTT*
Ga0066680_100809913	3300005174	Soil	VNVTLQLDVVALTLANVQGVPVNDPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT*
Ga0066680_104129363	3300005174	Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPLVNPTVPDGADAVPAAEV
Ga0066680_104238481	3300005174	Soil	VTVPDAVGLNVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAAEVSF
Ga0066680_105135612	3300005174	Soil	MVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTNPVHVTV*
Ga0066680_107640652	3300005174	Soil	VNVTLQLDVVAFTLAKVQGDPVNVPVAVPPLVNATVPRGADAVPATEVSFTNPVQLID*
Ga0066680_107666941	3300005174	Soil	VYVPLAMTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADASLTNPVQ
Ga0066680_108561711	3300005174	Soil	VYVPLAITVPVAVGLNVTLQLDVVALRLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD*
Ga0066680_108561712	3300005174	Soil	LAMTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADVSLTNPVHVVD*
Ga0066679_109636562	3300005176	Soil	MMVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTNPVHVTV*
Ga0066678_103459501	3300005181	Soil	MIVPALVGVKVTLQLDVVAFTAASAHGDPVNDPVAVPPLVNATDPSGALAVPAVEVSLTKPVQVVAWATT
Ga0066689_100389611	3300005447	Soil	MIVPALVGVKVTLQLDVVAFTAASAHGDPVNDPVAVPPLVNATDPSGALAVPA
Ga0066689_100389617	3300005447	Soil	VPDDVGVIVTLQLDVVALTLANVHGDPMNEPVAVPPFVNPTVPDGADAVPAAEVSFTKPVQVTV*
Ga0066689_101499331	3300005447	Soil	MTVPAFVGLKVTLQLEVVALTLANVQGDPVKDPAAVPPLVNATVPRGAEAVPATEVSFTNPV
Ga0066701_104243811	3300005552	Soil	VPLAITVPALVGLNVTVQLEVVALTDANVQGDPVKVPAAVPPFVNATVPSGALAVPAADVSLTNPVHVVACATTIEDGVQ
Ga0066692_101040215	3300005555	Soil	MTVPVAVGLNVTVQLDVVALTLANVHGDPVNDPVAVPPLVKATVPRGADAVPAVEVSLTNPVQLTDCATT
Ga0066692_101333632	3300005555	Soil	MMVPDDPGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTNPVHVTV*
Ga0066692_105110501	3300005555	Soil	MTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADASLTNPVQVVD*
Ga0066704_100765445	3300005557	Soil	MTVPVAVGLNVTVQLDVVALTLANVHGDPVNEPVAVPPLVNATVPSGADAVPTAEVSLTNPVQ
Ga0066704_103983511	3300005557	Soil	VYVPLAMTVPALVGLKVTLQLDVVALTDARVHGVPVKLPVAVPPLVNATVPRGAEAVPATEVSLTNPVHVVDCATTIVDGEQDTA
Ga0066704_105431092	3300005557	Soil	MTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADVSLTNPVHVVD*
Ga0066704_106533461	3300005557	Soil	VDVYVPLAMTVPCPVGVNVTEQLEAVVLTLASVQGEPVNDPVADPLFVNDTVPAGAEAVPAIDVSVTVAEQLTDWPI
Ga0066704_106865112	3300005557	Soil	MIVPALVGVKVTLQLDVVAFTAASAHGEPVNDPVAVPPLVNATDPSGALAVPAVEVSLTKPVQVVAWATTTVAG
Ga0066703_101370631	3300005568	Soil	VTVPDAVGLNVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAADASLTNPVQVVD*
Ga0066703_107395312	3300005568	Soil	LNVTVQLDVVALTLANVQGDPVNDPVAVPPFVKATVPRGALAVPAAEVSLTNPVQLIDCATTTVDGEHD
Ga0066691_100273311	3300005586	Soil	VNVTLQLDVVALTLANVQGVPVNDPVAVPPLVNATEPRGADAVPA
Ga0066691_101033242	3300005586	Soil	VPLAITVPDAVGLKVTLQLEVVALTLARVHGDPVNEPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT*
Ga0066691_102354421	3300005586	Soil	MIVPDAVGLNVTLQLDVVALTVANVQGDPVNVPVAVPPFVNATVPRGADAVPATEVSFTIPVHVTT*
Ga0066691_103412233	3300005586	Soil	MIVPDAVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPLVNPTVPDGADAVPAAEVSFTNPVQVTA*
Ga0066691_104044423	3300005586	Soil	MTVPALVGLNVTLQLDVVALTLANVQGDPVKDPAAVPPFVNATVPSGALAVPAVEVSLANPV
Ga0066691_107776261	3300005586	Soil	MQLDTVALTTANVQGEPLTVAVAVPVLVTATVPAGADAVPAAEVSLTKDVQVIVWPVDTDDGVHVTTV
Ga0066659_101482303	3300006797	Soil	VPLAITVPAPVGVNVTLQLDVVMFTLASVQGDPVKDPVAVPPLVKASVPPGADVVPLAMSLTKPVQVMA*
Ga0066659_101482304	3300006797	Soil	MIVPDAVGLNVTLQLDVVALTLANVQGDPVNVPVAVPPFVNATVPRGADAVPATEVSFTNPVHVTT*
Ga0066659_103427283	3300006797	Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNEPVAVPPLVNATVPSGADVVPAAEVSLTNPVQVTV*
Ga0099793_100452183	3300007258	Vadose Zone Soil	VYVPLAITVPVAVGLNVTLQLDVVALRFAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD*
Ga0099793_100452184	3300007258	Vadose Zone Soil	MTVPELVGVNVTLQLEVVALTEASVQGDPVKLPVAVPPLVNATVPRGADAVPAADASLTNPVQVVD*
Ga0099793_100886323	3300007258	Vadose Zone Soil	NVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAAEVSFTNPVQVTV*
Ga0099793_104519072	3300007258	Vadose Zone Soil	MTVPALVGVKVTLQLEVVVLTLARVHGDPVNEPVAVPPLVNATVPRGADAVPASEVSFTNPVQVMTCE
Ga0099793_104841332	3300007258	Vadose Zone Soil	MVPDAVGLNVTLQLDVVAFTLAKVQGDPVNEPVALPPLVNATVPSGALAVPATDVSLTKPVQVTV*
Ga0066710_10003984815	3300009012	Grasslands Soil	VNVTLQLDVVAFTLAKVQGDPVNVPVAVPPLVNATVPRGADAVPATEVSFTNPVQLID
Ga0066710_1000398483	3300009012	Grasslands Soil	MIVPALVGLKVTLQLDVVTLTLAKVQGDPVNEPVAVPPLVNATVPSGADAVPAAEVSLTNPAQVTT
Ga0066710_1000398488	3300009012	Grasslands Soil	MIVPDAVGLNVTLQLDVVALTVANVQGDPVNVPVAVPPFVNATVPRGADAVPATEVSFTNPVHVTT
Ga0066710_1005740071	3300009012	Grasslands Soil	LQLDVVALTLANVHGDPMNEPVAVPPLVNATVPSGADVVPAAEVSLTNPVQVTV
Ga0099829_110261892	3300009038	Vadose Zone Soil	LNVTVQLDVVALTLANVQGEPVNEPVAVPPLVNATVPRGADAVPASEVSLTNPVHV
Ga0099828_110110723	3300009089	Vadose Zone Soil	VTLQLDVVALTAANVQGEPVKDPVAVPPFVKATVPPGADVVPTIEVSLTNPEHVMD
Ga0137389_110400902	3300012096	Vadose Zone Soil	MMVPDAVGLNVTLQLDVVALTAANVQGEPVNEPVAVPPLVKATVPRGADAVPAAEVSFANPVHVTV*
Ga0137389_110400903	3300012096	Vadose Zone Soil	VPLAITVPAPVGVNVTLQLDVVVLTLARVHGDPVNEPVAVPPLVNATVPSGAEAVPEAVSLTNPVQVVAWATTIA
Ga0137388_107588203	3300012189	Vadose Zone Soil	MTVPDDVGLNVTVQLEVVALTLAKVQGDPVKDPVAVPPLVNATVPAGAEAVPDTEVSLTNAVQLVDCEITIADGE
Ga0137388_109765603	3300012189	Vadose Zone Soil	VSDDVYVPLAITVPAPVGVKVTLQLDVVALTLASVQGDPVKLPAAVPPFVNATVPAGALAVPAADVSLTKPVQVVAWETTIA
Ga0137388_113361191	3300012189	Vadose Zone Soil	MVPDAVGLNVTLQLDVVALTAANVQGEPVNEPVAVPPLVKATVPRGADAVPAAEVSFANPVHVTV*
Ga0137388_117416661	3300012189	Vadose Zone Soil	LQLEVVALTPASVHGDPVNEPLAVPLLVKATVPAGADAVPAA
Ga0137399_100552845	3300012203	Vadose Zone Soil	VYVPLAITVPVAVGLNVTVQLDVVALTLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD*
Ga0137399_100552846	3300012203	Vadose Zone Soil	MTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADSSLTNPVQVVD*
Ga0137399_101561601	3300012203	Vadose Zone Soil	MMVPDAVGLNVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAAEVSFTNPVQVTV*
Ga0137399_101561604	3300012203	Vadose Zone Soil	VTVPDAVGLNVTLQLEVVALTDASVHGVPVKLPVAVPPLVNATVPRGEDAVPAAEVSLTNPVQVTI*
Ga0137399_102605482	3300012203	Vadose Zone Soil	MTVPDAVGLNVTLQLDVVALTPARVHGDPVNEPVAVPPFVNATLPSGADAVPAAEVSLTNPVHVTV*
Ga0137399_104437964	3300012203	Vadose Zone Soil	MTVPALVGVKVTLQLEVVALTLANVHGEPVNEPVAVPPLVNATVPRGADAVPAAEVSLTNPVQVMTWE
Ga0137399_105634172	3300012203	Vadose Zone Soil	MIVPDDVGVIVTLQLDVVALTLANVQGDPVNDPVAVPPFVNPTVPDGADAVPATEVSLTNPVHVTV*
Ga0137399_107092563	3300012203	Vadose Zone Soil	VDVYVPLAMIVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNATVPRGADAVPAAEVSLTNPVHVTV*
Ga0137399_107965913	3300012203	Vadose Zone Soil	VSVEVYVPLAIRVPAPVAVKVTLQLDTVALTEARVQGDPVKLPVAVPPFVNATVPSGADAVPAAEVSLTNPVQVTT*
Ga0137399_108241772	3300012203	Vadose Zone Soil	MPLAMTVPAPVGVMVTTQLDVVAFTLARVHGVPVKLPAVVPPLLTATEPRGADAVPADVSLTNIVQLMD*
Ga0137399_117722452	3300012203	Vadose Zone Soil	VPLAITVPDAVGVKVTLQLEVVALTPANVHGDPVNDPVAVPPLVKATLPRGAEAAPAADVSLTNPVHVVA
Ga0134056_10552712	3300012397	Grasslands Soil	MTVPVAVGVNVTVQLDVVALTPANVHGLPLNDPVAVPVLANPTVPAGDDAVPAADVSFTNAVQLVD*
Ga0137396_100231736	3300012918	Vadose Zone Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNATVPRGADAVPAAEVSLTNPV
Ga0137396_100348561	3300012918	Vadose Zone Soil	LNVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAAEVSFTNPVQV
Ga0137396_100773776	3300012918	Vadose Zone Soil	MVPDAVGLNVTLQLDVVAFTLAKVQGDPVNEPVALPPLVNATVPSGALAVPATDVSLTKPVQFTV*
Ga0137396_103429954	3300012918	Vadose Zone Soil	PLAMTVPDAVGLNVTLQLDVVALTPARVHGDPVNEPVAVPPFVNATLPSGADAVPAAEVSLTNPVHVTV*
Ga0137419_115699671	3300012925	Vadose Zone Soil	VVELADTEQLEVVAFTLTSVQGETVNEADAVPLLVNATVPRGAEAVPAADVSLTNAVQLVDWPITIVAGEHVMAVEV
Ga0137416_110183432	3300012927	Vadose Zone Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNEPVAVPPFVNPTVADGADAVPAAEISLTKSVQVTVASIATVAGAHE
Ga0137416_114613571	3300012927	Vadose Zone Soil	VPLAITVPVLVAPNVTLQLEVVALTLANVHGDPVKDPVAEPPLVNATVPRGADAVPAAEVSLTKPVHV
Ga0137416_118360061	3300012927	Vadose Zone Soil	VTLQLEVVALTLARVQGEPVNDPAAVPPFVNATVPSGALAVPAADVSFTNPVHVVACETTTADGEQLTAVD
Ga0137418_103920124	3300015241	Vadose Zone Soil	KVTLQLDTVALTDARVQGDPVKLPVAVPPLVNATVPSGADAVPAAEVSLTNPVQVTT*
Ga0137418_108920532	3300015241	Vadose Zone Soil	LQLDVVALTLANVQGVPVNDPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT*
Ga0066662_100888304	3300018468	Grasslands Soil	VYVPLAITVPVAVGLNVTVQLDVVALRLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD
Ga0066662_100888305	3300018468	Grasslands Soil	MTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADASLTNPVQVVD
Ga0066662_101134071	3300018468	Grasslands Soil	MTEPALVGVKVTLQLDVVALTLARVHGVPVNEPVAVPPFVKATVPSGALAVPATEVSLTKPVQVTV
Ga0066662_107428793	3300018468	Grasslands Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTNPVHVTV
Ga0066662_108808522	3300018468	Grasslands Soil	VPLAITVPAPVGVNVTLQLDVVMFTLASVQGDPVKDPVAVPPLVKASVPPGADVVPLAMSLTKPVQVMA
Ga0066662_108900101	3300018468	Grasslands Soil	TIVPALVGTMVTEQLVVVVLTVARVHGEPVKLPLAVPLLVNATVPVGTDGVPSDVSLTNAVHVTV
Ga0066662_108900103	3300018468	Grasslands Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNEPVAVPPFVNPTVPDGADAVPAAEVSFTKPVQVTV
Ga0066662_109480593	3300018468	Grasslands Soil	VTLQLEVVALTLARVQGEPVNDPAAVPPFVNATVPSGALAVPAADVSFTN
Ga0066662_111013903	3300018468	Grasslands Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDTMNEPVAVPPFVNPTVPDGADAVPAAEVSFTKPVQVTV
Ga0066662_113152311	3300018468	Grasslands Soil	VPLAITVPCPVGLNVAEQLDVVALIVVKLHGVPVKLPVAVPEFENPTVPPGALALPVAEVSLTKAVQLMD
Ga0066662_113509541	3300018468	Grasslands Soil	MTVPALVGVKVTLQLEVVALTLANVHGEPVNEPVAVPPLVNATVPRGADAVPAADASLTNPVQVMTWETTTV
Ga0066662_124268002	3300018468	Grasslands Soil	VAVKVTLQLDTVALTEARVQGDPVKLPVAVPPLVNATVPSGADAVPAAEVSLTNPVQVTT
Ga0209235_12062372	3300026296	Grasslands Soil	MIVPDDVGAIVTLQLDVVALTLANVQGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTKPVQVTV
Ga0209237_11485633	3300026297	Grasslands Soil	TVPVAVGLNVTLQLDVVALKLANVQGEPVNDPVAVPPLVNATVPRGADAVPATEVSLTNPVQLTN
Ga0209236_10628235	3300026298	Grasslands Soil	VPDDVGVIVTLQLDVVALTLANVHGDPMNEPVAVPPFVNPTVPDGADAVPAAEVSFTKPVQVTV
Ga0209236_10879922	3300026298	Grasslands Soil	VTVPDAVGLNVTLQLEVVALTLARVHGEPVKDPVADPPLVNATVPRGADAVPAADVSLTNPVQVTV
Ga0209236_11553503	3300026298	Grasslands Soil	VTVPDAVGLNVTLQLEVVALTLARVHGDPVNVPIAVPPLVNATVPSGALAAPATEVSFTNPVQVTV
Ga0209236_11586192	3300026298	Grasslands Soil	MTVPVAVGLNVTLQLDVVALKLANVQGEPVNDPVAVPPLVNATVPRGADAVPATEVSLTNPVQLTN
Ga0209761_11529901	3300026313	Grasslands Soil	MTVPALVGLKVTLQLDVVALTLAKVQGDPVKDPAAVPPFANATVPSGALAVPAVEVSLANPV
Ga0209761_13071411	3300026313	Grasslands Soil	MIVPDDVGVIVTLQLDVVALTLANVHGDPMNEPVAVPPLVNATVPSGADVVPAAEVSLTNPVQVTV
Ga0209802_10392783	3300026328	Soil	MMVPDDVGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTNPVHVTV
Ga0209802_10436426	3300026328	Soil	VYVPLAITVPVAVGLNVTVQLDVVALTLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD
Ga0209802_10516313	3300026328	Soil	VPLAITVPDAVGLKVTLQLEVVALTLARVHGDPVNEPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT
Ga0209802_10569341	3300026328	Soil	MTVPVVVAVNVTLHVDVVALKLARVQGEPVKLPAEVPPLVNATVPRGADAVPAAVSLTVAVQ
Ga0209802_11409451	3300026328	Soil	MTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADVSLTNPVHVVD
Ga0209802_11450373	3300026328	Soil	VQLEAVVLTLASVQGDPVNDPVADPLFVKDTVPPGAEAVPAAEVSVTVAEQLMD
Ga0209802_11491312	3300026328	Soil	VLVGTMVTEQLAVVVLTVARVHGEPVKLPLAVPLLVNATAPVGTDGVPSDVSLTNAVHVT
Ga0209803_11083911	3300026332	Soil	SVDVYVPLAIRVPAPVAVKVTLQLDTVALTEATVQGDPVKLPVAVPPLVNATVPSGAEAVPAAEVSLTNPVQVTT
Ga0209377_10611073	3300026334	Soil	MTVPAFVGLKVTLQLEVVALTLANVQGDPVKDPAAVPPLVNATVPRGAEAVPATEVSFTNPVHVTI
Ga0209377_11243153	3300026334	Soil	VPLAITVPALVGLNVTVQLEVVALTDANVQGDPVKLPVAVPPLVNATVPSGADAVPAAEVSLTNPVQVTT
Ga0209806_12743772	3300026529	Soil	VTVPDAVGLNVTLQLEVVALTLARVHGDPVKDPVADPPLVNATVPRGADAVPAADVSLT
Ga0209806_12923862	3300026529	Soil	AITVPAPVGVNVTLQLDVVAFTLAKVQGDPVNVPVAVPPLVNATVPRGADAVPATEVSFTNPVQLID
Ga0209160_10146011	3300026532	Soil	VYVPLAITVPVAVGLNVTLQLDVVALRLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD
Ga0209160_10146019	3300026532	Soil	VNVTLQLDVVALTLANVQGVPVNDPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT
Ga0209160_10487891	3300026532	Soil	IRVPAPVGVKVTLQLDTVALTDARVQGDPVKLPVAVPPLVNATVPSGADAVPAAEVSLTNPVQVTT
Ga0209160_11649964	3300026532	Soil	VDVYVPLAMTVPCPVGVNVTEQLEAVVLTLASVQGEPVNDPVADPLFVNDTVPAGAEAVPAIDVSVAVAEQLTDW
Ga0209160_11999251	3300026532	Soil	MTVPVLVGAKVTLQLDVVALTAARVQGEPVNDPVAVPPFVKATVPSGALAVPATEVS
Ga0209160_12130663	3300026532	Soil	MTVPALVGVKVTLQLEVVALTLARVHGDPVNEPVAVPPLVNATVPRGADAVPASEVSLTNPVQVM
Ga0209160_13386851	3300026532	Soil	VPLAITVPEFVGVKVTLQLDVVALTVVKLHGVPVNEPVAVPPLVNAIVPPGALGVPAREVSLTNPVQVVA
Ga0209076_11034273	3300027643	Vadose Zone Soil	MTVPALVGVKVTLQLEVVALTLANVHGEPVNEPVAVPPLVNATVPRGADAVPAADVS
Ga0209076_11045362	3300027643	Vadose Zone Soil	MMVPDDPGVIVTLQLDVVALTLANVHGDPMNDPVAVPPFVNPTVPDGADAVPAAEVSFTNPVHVTV
Ga0209283_106006582	3300027875	Vadose Zone Soil	MTVPALVGVKVTLQLDVVALTLARVHGEPVNEPVADPPLVNATVPRGAEAVPATEV
Ga0137415_102742241	3300028536	Vadose Zone Soil	VYVPLAITLPELVGAKVTLQLAVVALTVARVQGDPVKDPVALPPLVNATVPVGVLAVPAA
Ga0137415_102742244	3300028536	Vadose Zone Soil	MIVPDAVGLNVTLQLDVVALTAARVHGDPVKDPVADPPLVNATVPRGADAVPAADVSLTNPVQVTV
Ga0137415_103738982	3300028536	Vadose Zone Soil	VPLAITVPVLVAPKVTLQLEVVALTLANVHGDPVKDPVAEPPLVNATVPRGADAVPANADGKGRC
Ga0137415_105476813	3300028536	Vadose Zone Soil	MTVPALVGVKVTLQLEVVALTLANVHGEPVNEPVAVPPLVNATVPRGADAVPAADASLTNPVQVMTWETTT
Ga0137415_111891881	3300028536	Vadose Zone Soil	NVTLQLDVVALTLANVQGVPVNDPVAVPPLVNATEPRGADAVPAAEVSFTNPVHVTT
Ga0137415_113490341	3300028536	Vadose Zone Soil	SVDEYVPLAMTVPLDVGLKVTVQLDVVALTLAKVHGEPVNEPVAVPPLVKAILPRGADAVPAAEVSFTNPVQVTV
Ga0137415_113490342	3300028536	Vadose Zone Soil	VNVTLQLDVVALTDASVQGEPVKLPVAVPPLVNATVPRGADAVPAADVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071041

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences