Metagenome / Metatranscriptome Family F071229

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071229
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	50 residues
Representative Sequence	MSDTTAIISACLILMSLYTTFHLGIECERERARKARRRRFEEDQE
Number of Associated Samples	60
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	91.80 %
% of genes near scaffold ends (potentially truncated)	12.30 %
% of genes from short scaffolds (< 2000 bps)	72.95 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (60.656 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic (27.869 % of family members)
Environment Ontology (ENVO)	Unclassified (62.295 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (63.934 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.53% β-sheet: 0.00% Coil/Unstructured: 42.47%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF03837	RecT	19.67
PF12728	HTH_17	17.21
PF13539	Peptidase_M15_4	4.10
PF04448	DUF551	4.10
PF13479	AAA_24	2.46
PF00574	CLP_protease	1.64
PF12705	PDDEXK_1	1.64
PF13589	HATPase_c_3	0.82
PF13481	AAA_25	0.82
PF08800	VirE_N	0.82
PF12684	DUF3799	0.82
PF13604	AAA_30	0.82
PF05037	DUF669	0.82
PF00589	Phage_integrase	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3723	Recombinational DNA repair protein RecT	Replication, recombination and repair [L]	19.67
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	3.28
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	3.28
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
All Organisms	root	All Organisms	39.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
cellular organisms	root	All Organisms → cellular organisms	36.89 %
Viruses	superkingdom	All Organisms → Viruses	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.89 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	22.95 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.46 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	18.03 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.46 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.64 %
Lentisphaerae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	16.39 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.46 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.64 %
unclassified Lentisphaerota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	15.57 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	2.46 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.64 %
unclassified Verrucomicrobiae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae	0.82 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	15.57 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.46 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.64 %
Verrucomicrobiae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium	0.82 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Roseibacillus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus	15.57 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.46 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.64 %
Verrucomicrobiae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium	0.82 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.66 %
Roseibacillus ishigakijimensis	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	15.57 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.46 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.64 %
Verrucomicrobiae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium	0.82 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10055613	Not Available	1258	Open in IMG/M
3300003413\|JGI25922J50271_10000306	All Organisms → cellular organisms → Bacteria	14640	Open in IMG/M
3300003413\|JGI25922J50271_10003965	All Organisms → cellular organisms → Bacteria	4231	Open in IMG/M
3300004240\|Ga0007787_10082816	Not Available	1479	Open in IMG/M
3300005581\|Ga0049081_10002343	All Organisms → cellular organisms → Bacteria → Proteobacteria	7132	Open in IMG/M
3300005581\|Ga0049081_10035947	Not Available	1883	Open in IMG/M
3300005581\|Ga0049081_10064854	All Organisms → cellular organisms → Bacteria → PVC group	1374	Open in IMG/M
3300005581\|Ga0049081_10094150	Not Available	1119	Open in IMG/M
3300005581\|Ga0049081_10107210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1039	Open in IMG/M
3300005581\|Ga0049081_10152681	Not Available	844	Open in IMG/M
3300005581\|Ga0049081_10156113	Not Available	833	Open in IMG/M
3300005581\|Ga0049081_10162534	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	813	Open in IMG/M
3300005581\|Ga0049081_10177718	Not Available	770	Open in IMG/M
3300005581\|Ga0049081_10202396	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	711	Open in IMG/M
3300005581\|Ga0049081_10216460	Not Available	682	Open in IMG/M
3300005581\|Ga0049081_10218086	Not Available	679	Open in IMG/M
3300005581\|Ga0049081_10228994	Not Available	658	Open in IMG/M
3300005581\|Ga0049081_10250554	Not Available	621	Open in IMG/M
3300005581\|Ga0049081_10260381	Not Available	606	Open in IMG/M
3300005581\|Ga0049081_10318641	Not Available	533	Open in IMG/M
3300005581\|Ga0049081_10319732	Not Available	531	Open in IMG/M
3300005582\|Ga0049080_10017762	All Organisms → cellular organisms → Bacteria → PVC group	2479	Open in IMG/M
3300005582\|Ga0049080_10046200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium	1507	Open in IMG/M
3300005582\|Ga0049080_10083682	Not Available	1090	Open in IMG/M
3300005582\|Ga0049080_10198325	Not Available	664	Open in IMG/M
3300006030\|Ga0075470_10137622	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300006484\|Ga0070744_10053911	Not Available	1177	Open in IMG/M
3300006484\|Ga0070744_10056251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1150	Open in IMG/M
3300006641\|Ga0075471_10071184	Not Available	1902	Open in IMG/M
3300006641\|Ga0075471_10091853	Not Available	1635	Open in IMG/M
3300006641\|Ga0075471_10359686	Not Available	734	Open in IMG/M
3300007545\|Ga0102873_1260070	Not Available	520	Open in IMG/M
3300007550\|Ga0102880_1033799	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1387	Open in IMG/M
3300007555\|Ga0102817_1030876	Not Available	1180	Open in IMG/M
3300007559\|Ga0102828_1030265	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1213	Open in IMG/M
3300007560\|Ga0102913_1037038	Not Available	1596	Open in IMG/M
3300007561\|Ga0102914_1074609	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1064	Open in IMG/M
3300007600\|Ga0102920_1241980	Not Available	580	Open in IMG/M
3300007617\|Ga0102897_1236781	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300007634\|Ga0102901_1089069	Not Available	885	Open in IMG/M
3300007642\|Ga0102876_1073041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	942	Open in IMG/M
3300007644\|Ga0102902_1115473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	800	Open in IMG/M
3300007651\|Ga0102900_1071695	Not Available	739	Open in IMG/M
3300007655\|Ga0102825_1073575	Not Available	696	Open in IMG/M
3300007708\|Ga0102859_1215125	Not Available	573	Open in IMG/M
3300008999\|Ga0102816_1097906	Not Available	895	Open in IMG/M
3300008999\|Ga0102816_1129446	Not Available	778	Open in IMG/M
3300009026\|Ga0102829_1017190	All Organisms → cellular organisms → Bacteria → PVC group	2039	Open in IMG/M
3300009026\|Ga0102829_1030301	Not Available	1576	Open in IMG/M
3300009026\|Ga0102829_1040837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1376	Open in IMG/M
3300009026\|Ga0102829_1244660	Not Available	589	Open in IMG/M
3300009057\|Ga0102892_1106935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	549	Open in IMG/M
3300009151\|Ga0114962_10394143	Not Available	751	Open in IMG/M
3300009158\|Ga0114977_10008719	All Organisms → cellular organisms → Bacteria	6427	Open in IMG/M
3300009158\|Ga0114977_10065109	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2240	Open in IMG/M
3300009159\|Ga0114978_10281115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300009163\|Ga0114970_10005435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9184	Open in IMG/M
3300009185\|Ga0114971_10004507	All Organisms → cellular organisms → Bacteria	9416	Open in IMG/M
3300009185\|Ga0114971_10046156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2749	Open in IMG/M
3300012017\|Ga0153801_1002544	Not Available	3579	Open in IMG/M
3300012017\|Ga0153801_1040779	Not Available	820	Open in IMG/M
3300013372\|Ga0177922_10028060	Not Available	690	Open in IMG/M
3300013372\|Ga0177922_11144149	Not Available	795	Open in IMG/M
3300013372\|Ga0177922_11144432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1220	Open in IMG/M
3300013372\|Ga0177922_11186582	Not Available	967	Open in IMG/M
3300020151\|Ga0211736_10628059	Not Available	730	Open in IMG/M
3300020161\|Ga0211726_10119945	Not Available	865	Open in IMG/M
3300020161\|Ga0211726_10243850	All Organisms → cellular organisms → Bacteria → PVC group	1951	Open in IMG/M
3300020161\|Ga0211726_10932299	Not Available	1019	Open in IMG/M
3300020162\|Ga0211735_10641743	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	27499	Open in IMG/M
3300020172\|Ga0211729_10777142	Not Available	601	Open in IMG/M
3300021325\|Ga0210301_1017392	Not Available	788	Open in IMG/M
3300021328\|Ga0210298_1178313	Not Available	1280	Open in IMG/M
3300023184\|Ga0214919_10029246	All Organisms → cellular organisms → Bacteria	5807	Open in IMG/M
3300023184\|Ga0214919_10061380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	3479	Open in IMG/M
3300023184\|Ga0214919_10066520	Not Available	3291	Open in IMG/M
3300023184\|Ga0214919_10098803	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300023184\|Ga0214919_10100149	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2472	Open in IMG/M
3300023184\|Ga0214919_10106889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2361	Open in IMG/M
3300023184\|Ga0214919_10219803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1399	Open in IMG/M
3300023184\|Ga0214919_10261745	Not Available	1228	Open in IMG/M
3300023184\|Ga0214919_10342131	Not Available	1003	Open in IMG/M
3300023184\|Ga0214919_10418144	Not Available	861	Open in IMG/M
3300024343\|Ga0244777_10049731	Not Available	2679	Open in IMG/M
3300024343\|Ga0244777_10106949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1806	Open in IMG/M
3300024348\|Ga0244776_10136416	Not Available	1800	Open in IMG/M
3300024348\|Ga0244776_10504844	Not Available	780	Open in IMG/M
3300025732\|Ga0208784_1004862	Not Available	4941	Open in IMG/M
3300025872\|Ga0208783_10019805	All Organisms → cellular organisms → Bacteria	3313	Open in IMG/M
3300025872\|Ga0208783_10358175	Not Available	570	Open in IMG/M
3300027223\|Ga0208169_1031859	Not Available	1003	Open in IMG/M
3300027320\|Ga0208923_1011738	All Organisms → cellular organisms → Bacteria → PVC group	1535	Open in IMG/M
3300027320\|Ga0208923_1042128	Not Available	814	Open in IMG/M
3300027608\|Ga0208974_1001272	All Organisms → cellular organisms → Bacteria	9920	Open in IMG/M
3300027608\|Ga0208974_1002252	Not Available	7245	Open in IMG/M
3300027608\|Ga0208974_1111055	Not Available	723	Open in IMG/M
3300027608\|Ga0208974_1170286	Not Available	541	Open in IMG/M
3300027659\|Ga0208975_1001221	All Organisms → cellular organisms → Bacteria	11167	Open in IMG/M
3300027659\|Ga0208975_1008029	Not Available	3732	Open in IMG/M
3300027659\|Ga0208975_1012095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2945	Open in IMG/M
3300027659\|Ga0208975_1083656	Not Available	941	Open in IMG/M
3300027659\|Ga0208975_1097944	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	854	Open in IMG/M
3300027659\|Ga0208975_1125993	Not Available	728	Open in IMG/M
3300027659\|Ga0208975_1166770	Not Available	606	Open in IMG/M
3300027659\|Ga0208975_1208000	Not Available	520	Open in IMG/M
3300027659\|Ga0208975_1211174	Not Available	514	Open in IMG/M
3300027679\|Ga0209769_1119042	Not Available	847	Open in IMG/M
3300027733\|Ga0209297_1000329	Not Available	31640	Open in IMG/M
3300027733\|Ga0209297_1105696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	1201	Open in IMG/M
3300027736\|Ga0209190_1000182	Not Available	44466	Open in IMG/M
3300027746\|Ga0209597_1004082	All Organisms → cellular organisms → Bacteria	8980	Open in IMG/M
3300027769\|Ga0209770_10003411	All Organisms → cellular organisms → Bacteria	7758	Open in IMG/M
3300027797\|Ga0209107_10013915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	4562	Open in IMG/M
3300027797\|Ga0209107_10111707	Not Available	1447	Open in IMG/M
3300027804\|Ga0209358_10178022	Not Available	1117	Open in IMG/M
3300027808\|Ga0209354_10311791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	624	Open in IMG/M
3300027892\|Ga0209550_10073326	Not Available	2652	Open in IMG/M
3300033995\|Ga0335003_0055199	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2126	Open in IMG/M
3300034093\|Ga0335012_0381797	Not Available	693	Open in IMG/M
3300034095\|Ga0335022_0097551	Not Available	1879	Open in IMG/M
3300034107\|Ga0335037_0531035	Not Available	627	Open in IMG/M
3300034107\|Ga0335037_0599882	Not Available	582	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	68.03%
Marine	Environmental → Aquatic → Marine	31.97%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	36.89%
Lake	Environmental → Aquatic → Freshwater → Lake	31.15%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	24.59%
Coastal	Environmental → Aquatic → Marine → Coastal	5.74%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	34.43%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	31.15%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	24.59%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.74%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.46%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	27.87%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	24.59%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	12.30%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.02%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	6.56%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.74%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	2.46%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.64%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007560	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007600	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3	Environmental	Open in IMG/M
3300007617	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02	Environmental	Open in IMG/M
3300007634	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02	Environmental	Open in IMG/M
3300007642	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3	Environmental	Open in IMG/M
3300007644	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02	Environmental	Open in IMG/M
3300007651	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3	Environmental	Open in IMG/M
3300007655	Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579	Environmental	Open in IMG/M
3300007708	Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009057	Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental	Open in IMG/M
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300021325	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021328	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R877 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025872	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027223	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3 (SPAdes)	Environmental	Open in IMG/M
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027746	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034095	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091	Environmental	Open in IMG/M
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100556135	3300000756	Freshwater And Sediment	MSDTTAIISACLILMSLYTTFHLGIECERERIRRERRRRFEEDQEK*
JGI25922J50271_1000030621	3300003413	Freshwater Lake	MSDTTALISAALIMASLYTTFHLGIECERERARKARRRRWDEEDNSPK*
JGI25922J50271_100039656	3300003413	Freshwater Lake	MSDTTGIIAACLIMLSLYTTFHLGIECERERIRRERRRRFEEDQE*
Ga0007787_100828163	3300004240	Freshwater Lake	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRRRFEEGQEK*
Ga0049081_100023431	3300005581	Freshwater Lentic	MSDTTALIAAALIMASLYTTFHLGIECERERIRKARRRRFEEDQDNHDDFD*
Ga0049081_100359473	3300005581	Freshwater Lentic	MSDTTALISAFLVMASLYTTFHLGIECERERIRKARRRRFEEDQEK*
Ga0049081_100648542	3300005581	Freshwater Lentic	MSDTTALISAALIMASLYITFHLGIECERERIRRERRRRFEEDNHDSANHDDFD*
Ga0049081_100941501	3300005581	Freshwater Lentic	MSDTTGIIAACLIMLSLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD*
Ga0049081_101072102	3300005581	Freshwater Lentic	MSDTTALISAALIMLSLYITFHLGIECERERIRRERRRRFEEDQETDSANHDDFD*
Ga0049081_101526814	3300005581	Freshwater Lentic	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDKDNRDSDNHDDFD*
Ga0049081_101561131	3300005581	Freshwater Lentic	MSDTTAIVSACLIMMSLYITFHLGIECERERARQARRKKFDQENHDSANHDDFD*
Ga0049081_101625341	3300005581	Freshwater Lentic	MSDTTGIIAACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNNDSANHDDFD*
Ga0049081_101777184	3300005581	Freshwater Lentic	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRSRFEEDQEK*
Ga0049081_102023963	3300005581	Freshwater Lentic	MSDTTALISAFLVMASLYTTFQLGIECERERIRKERRRRFDEDQEK*
Ga0049081_102164604	3300005581	Freshwater Lentic	MSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRFEEDQEK*
Ga0049081_102180863	3300005581	Freshwater Lentic	MSDTTAIIGACLIMMSLYTTFHLGIECERERARQARRRRFEEDQEK*
Ga0049081_102289942	3300005581	Freshwater Lentic	MSDTTAIVAACLIMMSLYTTFHLGIECERERIRKERRRRFEEDQEK*
Ga0049081_102505542	3300005581	Freshwater Lentic	MSDTTAIVSACLVMMSLYTTFQLGIECERERARKERRKRFDDDQE*
Ga0049081_102603812	3300005581	Freshwater Lentic	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRRRFEEDQEK*
Ga0049081_103186411	3300005581	Freshwater Lentic	MSDTTGIIAACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNHDSANHDDFD*
Ga0049081_103197321	3300005581	Freshwater Lentic	MSDTTGIIAACLIMLSLYTTFHLGIECERERARQA
Ga0049080_100177622	3300005582	Freshwater Lentic	MSDTTGIIAACLIMLSLYTTFQLGIECERERIRRERRRRFEEDQE*
Ga0049080_100462001	3300005582	Freshwater Lentic	QPEGEPMSDTTALIAAALIMASLYTTFHLGIECERERIRKERRRRFEEEDNSPK*
Ga0049080_100836823	3300005582	Freshwater Lentic	MSDTTAIVAACLVMMSLYTTFQLGIECERERARKARRRRYNEEDTQ*
Ga0049080_101983251	3300005582	Freshwater Lentic	MSDTAALISAALIMASLYITFHLGIECERERARQARRKKFEQDNHDSANHDDFD*
Ga0075470_101376222	3300006030	Aqueous	MSDTTALIAACLVMLSLYTTFHLGVGCERERIRKERRRRLQEADQEK*
Ga0070744_100539112	3300006484	Estuarine	MSDTTAIISACLILMSLYTTFQLGIECERERARQARRRRFEEDQEK*
Ga0070744_100562512	3300006484	Estuarine	MSDTTALISAALIMASLYITFQLGIECERERIRRERRRRFEEDNNDSANHDDFD*
Ga0075471_100711847	3300006641	Aqueous	MSDTTALIAACLVMLSLYTTFHLGVECERERIRKERRRRLQEADQEK*
Ga0075471_100918534	3300006641	Aqueous	MSDTAGLAAACLILMSLYTTFHLGIECERERARKERRRRWDEQNNLHKND*
Ga0075471_103596862	3300006641	Aqueous	MSDQAALIAACLVMLSLYTTFHLGVECERERIRKERRRRFQEEDTQITPPKNP*
Ga0102873_12600701	3300007545	Estuarine	MSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRWDEEDNSPK*
Ga0102880_10337992	3300007550	Estuarine	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD*
Ga0102817_10308765	3300007555	Estuarine	MSDTTGIIGACLILMSLYTTFQLGIEFERERIRRERRRRFDEDQDNHDSANHDDFD*
Ga0102828_10302652	3300007559	Estuarine	MSDTTGIISGCLIMLSLYITFQLGIECERERARQARRRRFEEDHENDSANHDDFD*
Ga0102913_10370386	3300007560	Estuarine	MSDTTAIIGACLIMASLYTTFQLGVECERERIRRERRRRFEEDNHDSANHDDFD*
Ga0102914_10746091	3300007561	Estuarine	TPQPEGRTMSDTTAIIGACLIMASLYTTFQLGVECERERIRRERRRRFEEDNHDSANHDDFD*
Ga0102920_12419802	3300007600	Estuarine	MSDTTGIISACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNHVSANHDDFD*
Ga0102897_12367811	3300007617	Estuarine	GEPMSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRWDEEDNSPK*
Ga0102901_10890692	3300007634	Estuarine	QPEGRTMSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD
Ga0102876_10730412	3300007642	Estuarine	MSDTTGIISACLIMMSLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD*
Ga0102902_11154731	3300007644	Estuarine	PEGEPMSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD*
Ga0102900_10716953	3300007651	Estuarine	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDKDNHDSANHDDFD*
Ga0102825_10735754	3300007655	Estuarine	MSDTTAIISACLILMSLYTTFQLGIECERERARQAHRRRFEEDQEK*
Ga0102859_12151252	3300007708	Estuarine	MSDTTGIISACLIMASLYITFQLGIECERERARQARRKKFDQDNHDSANHDDFD*
Ga0102816_10979062	3300008999	Estuarine	MSDTTGIISACLIMMSLYTTFQLGIECERERIRRERRRRFEKDQETDSANYDDFD*
Ga0102816_11294461	3300008999	Estuarine	MSDTTGIIGACLILMSLYTTFQLGIEFERERIRRERRRRFDEDQANHD
Ga0102829_10171901	3300009026	Estuarine	TTGIIAACLIMASLYITFQLGIECERERARQARRKKFDQDNRDSANYDDFD*
Ga0102829_10303013	3300009026	Estuarine	MSDTTAIVSAFLVMASLYTTFHLGIECERERARKARRRRYNEEDTE*
Ga0102829_10408371	3300009026	Estuarine	MSDTTGIISACLIMLSLYTTFQLGIECERERIRRERRRRFEEDQETDSANHDDFD*
Ga0102829_12446602	3300009026	Estuarine	MSDTTAIIGACLIMASLYITFQLGIECERERARQARRQKFDQDNHDSANHDDFD*
Ga0102892_11069352	3300009057	Estuarine	EPMSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRWDEEDNSPK*
Ga0114962_103941433	3300009151	Freshwater Lake	MSDTTALIAAALIMMSLYTTFHLGIECERERIRKERRRRFKEDNSPK*
Ga0114977_100087198	3300009158	Freshwater Lake	MSETTALISAFLVMASLYTTFHLGIECERERIRKERRRRFKEDNSPK*
Ga0114977_100651097	3300009158	Freshwater Lake	MSDTTAIIGACLIMLSLYTTFQLGIECERERIRRERRKKFDQDNHDSANHDYFD*
Ga0114978_102811152	3300009159	Freshwater Lake	MSDTTAIIAAALIMMSLYTTFHLGIECERERIRRGRRRRFEEDNHDSANHDDFD*
Ga0114970_100054359	3300009163	Freshwater Lake	MSDTTGIIGAGLILMSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD*
Ga0114971_1000450711	3300009185	Freshwater Lake	MIDTAALISASLILMSLYTTFQLGIECERERARKARRRRWDEEDTQ*
Ga0114971_100461565	3300009185	Freshwater Lake	MSDTPALISAALIMASLYTTFHLGIECERERIRRERRRRFEEDNHDSANHDDFD*
Ga0153801_10025445	3300012017	Freshwater	MSDTTAIIAACLILMSLYTTFHLGIECERERARQARRRRFEEDQEK*
Ga0153801_10407794	3300012017	Freshwater	MSDTTGIIAACLIMLSLYTTFHLGIECERERIRRERRRRFEEDNSPK*
Ga0177922_100280602	3300013372	Freshwater	MSDTTGIIAACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNSPK*
Ga0177922_111441491	3300013372	Freshwater	MSDTTAIVSAFLVMASLYTTFHLGIECERERIRKERRRRFEEEDNSPK*
Ga0177922_111444323	3300013372	Freshwater	MSDTTALISAFLVMASLYTTFHLGIECERERARKARRRRFEEDQEK*
Ga0177922_111865823	3300013372	Freshwater	MSDTTALISACLVMMSLYTTFQLGIECERERARKERRKRFDDDQE*
Ga0211736_106280593	3300020151	Freshwater	MSDTTALISAALIMMSLYTTFHLGIECERERARKARRRRFEEDQEK
Ga0211726_101199452	3300020161	Freshwater	MSDTTAIVSACLVMMSLYTTFHLGIECERERARKARRRRFEEDQE
Ga0211726_102438502	3300020161	Freshwater	MSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRFEEDQEK
Ga0211726_109322992	3300020161	Freshwater	MSDTTAIVSACLIMMSLYTTFHLGIECERERIRKARRRRFEEEDNSPK
Ga0211735_1064174335	3300020162	Freshwater	MSDTTAIVAACLVMMSLYTTFQLGIECERERARKARRRRFEEDQE
Ga0211729_107771422	3300020172	Freshwater	MSDTTAIVSACLIMMSLYTTFHLGIECERERIRKARRRRFEEEDQEK
Ga0210301_10173924	3300021325	Estuarine	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRRRFEEDQEK
Ga0210298_11783131	3300021328	Estuarine	MSDTTGIISACLIMLSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD
Ga0214919_100292467	3300023184	Freshwater	VSDKAALIAACLVMLSLYTTFHLGIECERERIRKERRRRFQEADQEKFPR
Ga0214919_100613802	3300023184	Freshwater	MSDTTALIAAAFIMASLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD
Ga0214919_100665203	3300023184	Freshwater	MSETTALISAFLVMASLYTTFHLGIECERERARKARRRRFEEEDNSPK
Ga0214919_100988034	3300023184	Freshwater	MSDTTALIAAALILMSLYTTFHLGIECERERTRKARRRRYEEDQEK
Ga0214919_101001493	3300023184	Freshwater	MSDTTAIISACLILMSLYTTFQLGIECERERARKARRRRYNEEDTQ
Ga0214919_101068893	3300023184	Freshwater	MSDTTGIIAACLIMASLYITFQLGIECERERIRRERRRRFEEDNNDSANHDDFD
Ga0214919_102198033	3300023184	Freshwater	MSDTTAIIGACLIMLSLYTTFQLGVECERERIRRERRRRFEEDQE
Ga0214919_102617452	3300023184	Freshwater	MSDTTAIVLAFLVMASLYTTFHLGIECERERARKARRRRYNEEDTE
Ga0214919_103421312	3300023184	Freshwater	MSDTTAIIGACLIMASLYTTFQLGIECERERIRRERRRRFEQDQETDSANHDEL
Ga0214919_104181443	3300023184	Freshwater	MSDTSALIAASLILMSLYTTFQLGIECERERARKARRRRFEEDQE
Ga0244777_100497313	3300024343	Estuarine	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDQDNHDSANHDDFD
Ga0244777_101069493	3300024343	Estuarine	MSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRWDEEDNSPK
Ga0244776_101364162	3300024348	Estuarine	MSDTTAIIGACLIMASLYTTFQLGVECERERIRRERRRRFEEDNHDSANHDDFD
Ga0244776_105048444	3300024348	Estuarine	MSDTTGIISACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNNDSANHDDFD
Ga0208784_100486215	3300025732	Aqueous	MSDTTALIAACLVMLSLYTTFHLGVECERERIRKERRRRLQEADQEK
Ga0208783_100198052	3300025872	Aqueous	MSDQAALIAACLVMLSLYTTFHLGVECERERIRKERRRRFQEEDTQITPPKNP
Ga0208783_103581753	3300025872	Aqueous	MSDTAGLAAACLILMSLYTTFHLGIECERERARKERRRRWDEQNNLHKND
Ga0208169_10318591	3300027223	Estuarine	EPMSDTTAIVSACLIMMSLYTTFHLGIECERERARKARRRRWDEEDNSPK
Ga0208923_10117382	3300027320	Estuarine	MSDTTGIIAACLIMASLYITFQLGIECERERARQARRKKFDQDNRDSANYDDFD
Ga0208923_10421284	3300027320	Estuarine	MSDTTAIVSAFLVMASLYTTFHLGIECERERARKAQ
Ga0208974_10012722	3300027608	Freshwater Lentic	MSDTTALIAAALIMASLYTTFHLGIECERERIRKARRRRFEEDQDNHDDFD
Ga0208974_10022528	3300027608	Freshwater Lentic	MSDTTALISAFLVMASLYTTFHLGIECERERIRKARRRRFEEDQEK
Ga0208974_11110553	3300027608	Freshwater Lentic	MSDTTALISAALIMASLYITFHLGIECERERARQARRRRFEEDQEK
Ga0208974_11702863	3300027608	Freshwater Lentic	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRSRFEEDQEK
Ga0208975_100122110	3300027659	Freshwater Lentic	MSDTTALISAALIMASLYITFHLGIECERERIRRERRRRFEEDNHDSANHDDFD
Ga0208975_10080299	3300027659	Freshwater Lentic	MSDTTAIIGACLIMMSLYTTFHLGIECERERARQARRRRFEEDQEK
Ga0208975_10120954	3300027659	Freshwater Lentic	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDKDNRDSDNHDDFD
Ga0208975_10836562	3300027659	Freshwater Lentic	MSDTTALISAFLVMASLYTTFQLGIECERERIRKERRRRFDEDQEK
Ga0208975_10979442	3300027659	Freshwater Lentic	MSDTTAIVAACLIMMSLYTTFHLGIECERERIRKERRRRFEEDQEK
Ga0208975_11259931	3300027659	Freshwater Lentic	MSDTTAIISACLIMASLYTTFQLGIECERERARQARRKKFEQDNHDSANH
Ga0208975_11667704	3300027659	Freshwater Lentic	MSDTTGIIAACLIMLSLYTTFHLGIECERERARQARRKKFD
Ga0208975_12080001	3300027659	Freshwater Lentic	MSDTTGIISACLIMASLYITFQLGIECERERIRRERRRRFEEDQEKDSANHDDFD
Ga0208975_12111741	3300027659	Freshwater Lentic	PEGDPMSDTTAIVSACLIMMSLYITFHLGIECERERARQARRKKFDQENHDSANHDDFD
Ga0209769_11190422	3300027679	Freshwater Lake	MSDTTAIIGACLIMMSLYTTFQLGIECERERIRRERRRRFDEDQANHDSANHDDFD
Ga0209297_100032938	3300027733	Freshwater Lake	MSETTALISAFLVMASLYTTFHLGIECERERIRKERRRRFKEDNSPK
Ga0209297_11056962	3300027733	Freshwater Lake	MSDTTAIIGACLIMLSLYTTFQLGIECERERIRRERRKKFDQDNHDSANHDYFD
Ga0209190_100018235	3300027736	Freshwater Lake	MSDTTGIIGAGLILMSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD
Ga0209597_100408211	3300027746	Freshwater Lake	MIDTAALISASLILMSLYTTFQLGIECERERARKARRRRWDEEDTQ
Ga0209770_100034115	3300027769	Freshwater Lake	MSDTTGIIAACLIMLSLYTTFHLGIECERERIRRERRRRFEEDQE
Ga0209107_100139158	3300027797	Freshwater And Sediment	MSDTTAIVSACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNHDSANHDDFD
Ga0209107_101117075	3300027797	Freshwater And Sediment	MSDTTAIISACLILMSLYTTFHLGIECERERIRRERRRRFEEDQEK
Ga0209358_101780222	3300027804	Freshwater Lake	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRRRFEEGQEK
Ga0209354_103117911	3300027808	Freshwater Lake	MSDTTALIAAALIMASLYTTFHLGIECERERARKARRRRFEEEDNSHK
Ga0209550_100733265	3300027892	Freshwater Lake	MSDTTAIIGACLIMMSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD
Ga0335003_0055199_1208_1372	3300033995	Freshwater	MSDTTAIVSACLIMMSLYTTFHLGIECERERARQARRKKFDQDNNDSANHDDFD
Ga0335012_0381797_131_295	3300034093	Freshwater	MSDTTAIIGACLIMASLYITFQLGIECERERARQARRKKFDQDNNDSANHDDFD
Ga0335022_0097551_792_929	3300034095	Freshwater	MSDTTAIISACLILMSLYTTFHLGIECERERARKARRRRFEEDQE
Ga0335037_0531035_485_625	3300034107	Freshwater	MSDTTALISATLIMASLYITFQLGIECERERARQARRKKFDQDNHDS
Ga0335037_0599882_358_522	3300034107	Freshwater	MSDTTAIVSACLIMMSLYTTFHLGIECERERIRRERRRRFEEDNNDSANHDDFD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071229

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences