Metagenome / Metatranscriptome Family F071428

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071428
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	75 residues
Representative Sequence	EADARIVRTQARTILATPALLPTVNRAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYAALAASNITVS
Number of Associated Samples	93
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	4.10 %
% of genes near scaffold ends (potentially truncated)	95.08 %
% of genes from short scaffolds (< 2000 bps)	87.70 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (62.295 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (13.115 % of family members)
Environment Ontology (ENVO)	Unclassified (29.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.295 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.49% β-sheet: 0.00% Coil/Unstructured: 50.51%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF13419	HAD_2	7.38
PF08044	DUF1707	4.92
PF12728	HTH_17	3.28
PF06831	H2TH	1.64
PF01850	PIN	1.64
PF00291	PALP	1.64
PF04149	DUF397	0.82
PF00582	Usp	0.82
PF03816	LytR_cpsA_psr	0.82
PF13857	Ank_5	0.82
PF14833	NAD_binding_11	0.82
PF14016	DUF4232	0.82
PF13635	DUF4143	0.82
PF08281	Sigma70_r4_2	0.82
PF02720	DUF222	0.82
PF02607	B12-binding_2	0.82
PF00271	Helicase_C	0.82
PF12848	ABC_tran_Xtn	0.82
PF02350	Epimerase_2	0.82
PF00589	Phage_integrase	0.82
PF00749	tRNA-synt_1c	0.82
PF00877	NLPC_P60	0.82
PF12773	DZR	0.82
PF02310	B12-binding	0.82
PF13520	AA_permease_2	0.82
PF04545	Sigma70_r4	0.82
PF03720	UDPG_MGDP_dh_C	0.82
PF01370	Epimerase	0.82
PF13540	RCC1_2	0.82
PF06827	zf-FPG_IleRS	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	1.64
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.82
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.82
COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	Cell wall/membrane/envelope biogenesis [M]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
All Organisms	root	All Organisms	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
cellular organisms	root	All Organisms → cellular organisms	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.75 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	2.46 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.28 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2.46 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.64 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1.64 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.82 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.82 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	1.64 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.64 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.82 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.82 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1.64 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.64 %
Streptomyces fodineus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces fodineus	0.82 %
Nocardiopsis chromatogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis chromatogenes	0.82 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10075618	Not Available	1826	Open in IMG/M
3300001356\|JGI12269J14319_10137947	Not Available	1076	Open in IMG/M
3300001356\|JGI12269J14319_10144532	Not Available	1034	Open in IMG/M
3300002245\|JGIcombinedJ26739_100424759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1207	Open in IMG/M
3300003505\|JGIcombinedJ51221_10468516	Not Available	508	Open in IMG/M
3300005434\|Ga0070709_11511887	Not Available	545	Open in IMG/M
3300005529\|Ga0070741_11217730	Not Available	634	Open in IMG/M
3300005538\|Ga0070731_10032659	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300005538\|Ga0070731_10226663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1241	Open in IMG/M
3300005542\|Ga0070732_10364394	Not Available	870	Open in IMG/M
3300005602\|Ga0070762_10240676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1122	Open in IMG/M
3300005610\|Ga0070763_10822952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	550	Open in IMG/M
3300005950\|Ga0066787_10134306	Not Available	551	Open in IMG/M
3300005993\|Ga0080027_10441763	Not Available	526	Open in IMG/M
3300006176\|Ga0070765_101346286	Not Available	673	Open in IMG/M
3300009521\|Ga0116222_1414530	Not Available	586	Open in IMG/M
3300009522\|Ga0116218_1404598	Not Available	609	Open in IMG/M
3300009624\|Ga0116105_1248900	Not Available	505	Open in IMG/M
3300009698\|Ga0116216_10926522	Not Available	521	Open in IMG/M
3300009824\|Ga0116219_10593805	Not Available	609	Open in IMG/M
3300010379\|Ga0136449_103257370	Not Available	626	Open in IMG/M
3300010379\|Ga0136449_104426411	Not Available	517	Open in IMG/M
3300010867\|Ga0126347_1036853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	546	Open in IMG/M
3300010876\|Ga0126361_10540473	Not Available	1115	Open in IMG/M
3300010876\|Ga0126361_10541337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300010876\|Ga0126361_10703611	Not Available	611	Open in IMG/M
3300010876\|Ga0126361_10896676	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300010876\|Ga0126361_11129553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2190	Open in IMG/M
3300012351\|Ga0137386_10735239	Not Available	709	Open in IMG/M
3300014169\|Ga0181531_10554806	Not Available	711	Open in IMG/M
3300014201\|Ga0181537_10322288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1061	Open in IMG/M
3300014201\|Ga0181537_10646221	Not Available	720	Open in IMG/M
3300014493\|Ga0182016_10303505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis chromatogenes	976	Open in IMG/M
3300014493\|Ga0182016_10649139	Not Available	596	Open in IMG/M
3300014501\|Ga0182024_11378827	Not Available	812	Open in IMG/M
3300014838\|Ga0182030_10019349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12968	Open in IMG/M
3300014838\|Ga0182030_10359309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1549	Open in IMG/M
3300014838\|Ga0182030_10494390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1224	Open in IMG/M
3300014838\|Ga0182030_10849218	Not Available	827	Open in IMG/M
3300014838\|Ga0182030_11350805	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300017821\|Ga0187812_1075936	Not Available	1111	Open in IMG/M
3300017821\|Ga0187812_1117432	Not Available	864	Open in IMG/M
3300017822\|Ga0187802_10019341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2325	Open in IMG/M
3300017822\|Ga0187802_10458508	Not Available	505	Open in IMG/M
3300017926\|Ga0187807_1093952	Not Available	941	Open in IMG/M
3300017946\|Ga0187879_10435606	Not Available	726	Open in IMG/M
3300017948\|Ga0187847_10121305	Not Available	1433	Open in IMG/M
3300017970\|Ga0187783_10051063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3051	Open in IMG/M
3300017970\|Ga0187783_10632975	Not Available	773	Open in IMG/M
3300017972\|Ga0187781_10362139	Not Available	1033	Open in IMG/M
3300017975\|Ga0187782_10092836	Not Available	2217	Open in IMG/M
3300017995\|Ga0187816_10224199	Not Available	819	Open in IMG/M
3300018001\|Ga0187815_10493238	Not Available	524	Open in IMG/M
3300018007\|Ga0187805_10411537	Not Available	629	Open in IMG/M
3300018007\|Ga0187805_10435771	Not Available	611	Open in IMG/M
3300018017\|Ga0187872_10183406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300018025\|Ga0187885_10086050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1545	Open in IMG/M
3300018035\|Ga0187875_10730282	Not Available	520	Open in IMG/M
3300018035\|Ga0187875_10746310	Not Available	513	Open in IMG/M
3300018037\|Ga0187883_10080679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1703	Open in IMG/M
3300018040\|Ga0187862_10511511	Not Available	721	Open in IMG/M
3300018043\|Ga0187887_10404958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	805	Open in IMG/M
3300018043\|Ga0187887_10890986	Not Available	527	Open in IMG/M
3300018046\|Ga0187851_10295009	Not Available	941	Open in IMG/M
3300018046\|Ga0187851_10675120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300018046\|Ga0187851_10816788	Not Available	524	Open in IMG/M
3300018062\|Ga0187784_10135402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2012	Open in IMG/M
3300018062\|Ga0187784_10635120	Not Available	857	Open in IMG/M
3300018085\|Ga0187772_10343001	Not Available	1031	Open in IMG/M
3300018086\|Ga0187769_11161803	Not Available	584	Open in IMG/M
3300019787\|Ga0182031_1281286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	971	Open in IMG/M
3300020582\|Ga0210395_11104754	Not Available	585	Open in IMG/M
3300021377\|Ga0213874_10349339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300021388\|Ga0213875_10199071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	942	Open in IMG/M
3300021401\|Ga0210393_10811527	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300021402\|Ga0210385_10731921	Not Available	758	Open in IMG/M
3300021402\|Ga0210385_11260684	Not Available	567	Open in IMG/M
3300021406\|Ga0210386_10802652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	809	Open in IMG/M
3300021433\|Ga0210391_11233541	Not Available	578	Open in IMG/M
3300021474\|Ga0210390_10733859	Not Available	821	Open in IMG/M
3300027334\|Ga0209529_1041116	Not Available	788	Open in IMG/M
3300027590\|Ga0209116_1097603	Not Available	644	Open in IMG/M
3300027604\|Ga0208324_1171160	Not Available	585	Open in IMG/M
3300027676\|Ga0209333_1163710	Not Available	596	Open in IMG/M
3300027692\|Ga0209530_1018960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2085	Open in IMG/M
3300027767\|Ga0209655_10271603	Not Available	550	Open in IMG/M
3300027829\|Ga0209773_10183852	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300027857\|Ga0209166_10164162	Not Available	1207	Open in IMG/M
3300027869\|Ga0209579_10818524	Not Available	503	Open in IMG/M
3300027905\|Ga0209415_10377758	Not Available	1160	Open in IMG/M
3300027908\|Ga0209006_10613402	Not Available	898	Open in IMG/M
3300028759\|Ga0302224_10335280	Not Available	610	Open in IMG/M
3300028781\|Ga0302223_10134582	Not Available	816	Open in IMG/M
3300028813\|Ga0302157_10083817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2062	Open in IMG/M
3300028863\|Ga0302218_10185071	Not Available	663	Open in IMG/M
3300028877\|Ga0302235_10022601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces fodineus	3386	Open in IMG/M
3300028877\|Ga0302235_10135399	Not Available	1105	Open in IMG/M
3300028879\|Ga0302229_10007512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6966	Open in IMG/M
3300029883\|Ga0311327_10928955	Not Available	501	Open in IMG/M
3300029943\|Ga0311340_10335863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1419	Open in IMG/M
3300029999\|Ga0311339_11356126	Not Available	641	Open in IMG/M
3300030056\|Ga0302181_10034181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2783	Open in IMG/M
3300030056\|Ga0302181_10267848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300030490\|Ga0302184_10055898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1905	Open in IMG/M
3300030524\|Ga0311357_10365251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1369	Open in IMG/M
3300030580\|Ga0311355_11883826	Not Available	505	Open in IMG/M
3300030688\|Ga0311345_10267663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1650	Open in IMG/M
3300031057\|Ga0170834_107134786	Not Available	1021	Open in IMG/M
3300031233\|Ga0302307_10034039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2780	Open in IMG/M
3300031234\|Ga0302325_10434927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2022	Open in IMG/M
3300031236\|Ga0302324_100863926	Not Available	1249	Open in IMG/M
3300031708\|Ga0310686_107431411	Not Available	729	Open in IMG/M
3300032160\|Ga0311301_10971452	Not Available	1129	Open in IMG/M
3300032160\|Ga0311301_11018144	Not Available	1092	Open in IMG/M
3300032160\|Ga0311301_12491923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300032805\|Ga0335078_11148724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	903	Open in IMG/M
3300032828\|Ga0335080_12305018	Not Available	515	Open in IMG/M
3300032898\|Ga0335072_11717201	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300033158\|Ga0335077_10018622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8687	Open in IMG/M
3300033158\|Ga0335077_10489594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1303	Open in IMG/M
3300034065\|Ga0334827_058551	Not Available	1389	Open in IMG/M
3300034124\|Ga0370483_0132647	Not Available	831	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.36%
Host-Associated	Host-Associated	1.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.41%
Aquatic	Environmental → Aquatic	22.95%
Plants	Host-Associated → Plants	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.02%
Freshwater	Environmental → Aquatic → Freshwater	22.95%
Peat	Environmental → Terrestrial → Peat	16.39%
Roots	Host-Associated → Plants → Roots	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.39%
Loam	Environmental → Terrestrial → Soil → Loam	9.02%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.39%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.48%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.20%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.56%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.82%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	13.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.66%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.38%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.56%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.46%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.64%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.64%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.82%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100756181	3300001356	Peatlands Soil	TLAGALVIENQATTVANHLIFEADARTVATQARTILAHPALLPTEHRAAYVTMLNDFITLAGLLQPGAHYGTTAQDYTAWYTALRATNITVA*
JGI12269J14319_101379471	3300001356	Peatlands Soil	SALVIENQATTVANHLIFEAAARTVRTQARTILANPALLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
JGI12269J14319_101445321	3300001356	Peatlands Soil	ASALVIENQATTVANHLIFEAAARTVRTEARTILANPALLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
JGIcombinedJ26739_1004247593	3300002245	Forest Soil	DLETEAHDDSTANHLAFEADARTVRTQARTILATTALLPTHNRAAYQQMLHKFITVTDILQPGTRYGTTPQDYTAWWAALTASNITVS*
JGIcombinedJ51221_104685162	3300003505	Forest Soil	TVANHLAFEADARIVRALAQQILTTPALQPTVHPAEYKNMLTDFIVVANLLQPGPGYGTTPQDYTAWNAAMNASNINVA*
Ga0070709_115118871	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AMDLETESHSDTVANHLIFEADARVVRSQAHKILATPSLLPRHNRAAYQHMLHKFITVANLLQPGPGYGTTPQDYDAWYAAMRASNITVW*
Ga0070741_112177302	3300005529	Surface Soil	TLAMDLETESHSDTVANHLIFEADARVVRSQAHKILATPSLLPSHNRAAYKQMLHKFITVANLLQPGAGYGTTAQDYTAWYAAMRASNITVW*
Ga0070731_100326595	3300005538	Surface Soil	ALVIENQATTVANHLVFEAAARTVRTQAQQILAHPALLPAVHRAAYVSMLNDFITVADMLQPGTHYGTTAQDYTAWYTALRASNITVA*
Ga0070731_102266631	3300005538	Surface Soil	AGALVIENQATTAANHLTFEADARTVATQARTILTHPNLLPTTHRAAYVTMLNDFITLAGLLQPGTGYGTTAQDYTAWYTALRATNITIS*
Ga0070732_103643943	3300005542	Surface Soil	FEAAARTVAAQARTILADPALLPATHRAAYQAMLHDFITLANLLQPGTHYGTTAQDYTAWYTALRASNITIS*
Ga0070762_102406763	3300005602	Soil	AALEVENYSPTVANHLIFEADARTVRTQARTILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNIIVA*
Ga0070763_108229522	3300005610	Soil	ADARTVRAQAEHILATPALLPAVHRAEYQTMLNDFITVANLLQPGPGYGTTPQDYTAWYAALHASNINVA*
Ga0066787_101343061	3300005950	Soil	EADARIVRTQARTILATPALLPTVNRAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYAALAASNITVS*
Ga0080027_104417632	3300005993	Prmafrost Soil	MDLETESHSDTVANHLIFEADARIVRSQARTILATPSLLPTHHRAAYQRMLHKYIKVANLLQPGPGYGTTPQDYAAWYDAMRASNITVW*
Ga0070765_1013462861	3300006176	Soil	ESHSPTVANHLAFEADARVVRAEAEKILSTRALLPTHNRRAYERMLKDFITVANLLQPGPGYGTTPQDYAAWYTALKASDITVW*
Ga0116222_14145301	3300009521	Peatlands Soil	DVDVLASALVIENQATTVANHLSFEAAARTVATQARTILAHPALLPTEHRAAYVTMLNDFITVANMLQPGARYGTTAQDYTAWYTALRATNITIT*
Ga0116218_14045981	3300009522	Peatlands Soil	ADARTVRTQAHKILTTRTLLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
Ga0116105_12489001	3300009624	Peatland	AQARQILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYVAWYQALHASNITVY*
Ga0116216_109265221	3300009698	Peatlands Soil	QARTILANPALLPAVHRAAYVTMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
Ga0116219_105938051	3300009824	Peatlands Soil	FEAAARTVRTQARTILANPALLPAVHRAAYVTMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
Ga0136449_1032573702	3300010379	Peatlands Soil	ALVIENQATTVANHLIFEADARTVATQARTILAHPALLPTEHRAAYVTMLNDFITLAGLLQPGAHYGTTAQDYTAWYTALRATNITVA*
Ga0136449_1044264111	3300010379	Peatlands Soil	HLIFEAAARTVRTEARTILANPALLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA*
Ga0126347_10368531	3300010867	Boreal Forest Soil	KILAHRALLPTHNRAAYKTMLKDFIVVANLLQPGPGYGTTPQDYKAWNTALRASNIIVW*
Ga0126361_105404731	3300010876	Boreal Forest Soil	ARKILRTPALLPTVNRPAYKRMLNDFIVVANLLQPGPGYGTTPQDYDAWYKALHASNINVS*
Ga0126361_105413371	3300010876	Boreal Forest Soil	ARKILRTPALLPTVNRPAYKRMLNDFIVVANLLQPGPGYGTTPQDYVAWYKALHASNINVS*
Ga0126361_107036112	3300010876	Boreal Forest Soil	AVRAQARTILGTPALLPKVNRAAYQQMLNDFITVADLLQPGPGYGTTPQDYTAWYKALHASNITVS*
Ga0126361_108966761	3300010876	Boreal Forest Soil	PALLPTVNRPAYKRMLNDFIVVANLLQPGPGYGTTPQDYAAWYKALHASNITVY*
Ga0126361_111295534	3300010876	Boreal Forest Soil	RTRALLPKHNLAAYKRMLNDFITVANLLQPGRGYGTTHQDYVAWYTALNASNITVY*
Ga0137386_107352391	3300012351	Vadose Zone Soil	RVVRAQARKILATPALLPKHNRAAYKRMLHKFIIVANMLQPGPDYGTTPQDYAAWYAAMRASNITVW*
Ga0181531_105548062	3300014169	Bog	FEADARTVRAQAARILATPALLPTLHQAAYKVMLNDFITVANLLQPGPGYGTTAQDDTAWNTALAASNITVS*
Ga0181537_103222882	3300014201	Bog	AARTVRAEARTILTTPALLPAANPGGYERMLNDFITVANLLQPGPGYGTTAQDDTAWYTAMNASNITVA*
Ga0181537_106462211	3300014201	Bog	KILATGALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALTASNVTVS*
Ga0182016_103035051	3300014493	Bog	TVANHLLFEADARIVRTEARKILTTPALLPATNRGGYERMLKDFIVVANLLQPGPGYGTTAQDDTAWYTALSASNITVA*
Ga0182016_106491392	3300014493	Bog	EEAQRILADPALLPTVNRAGYEQMLNDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS*
Ga0182024_113788272	3300014501	Permafrost	ANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNIDVS*
Ga0182030_1001934914	3300014838	Bog	ANHLAFEAGARTVRAEARTILGTPALLPATNRGGYERMLKDFIVVANLLQPGPDYGTTAQDDTAWYTALSASNITVA*
Ga0182030_103593094	3300014838	Bog	ANHLAFEAGARTVRTEARTILSTPALLPATNRGGYERMLKDFIVVANLLQPGPGYGTTAQDDTAWYTALSASNITVA*
Ga0182030_104943901	3300014838	Bog	AFEAGARTVRTEARTILSTPALLPATNRGGYERMLKDFIVVANLLQPGPGYGTTAQDDTAWYTALSASNITVA*
Ga0182030_108492181	3300014838	Bog	TILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGAGYGTTPQDYTAWYQALHASNITIY*
Ga0182030_113508051	3300014838	Bog	TPALLPAHNRAAYTAMLTDFVTVANLLQPGAGYGTTPQDYVAWYQALHASNITIY*
Ga0187812_10759361	3300017821	Freshwater Sediment	HLVFEADARTVRTQAHTILANPALLPTEHRAAYVTMLNDFITVANMLQPGADYGTTAQDYTAWYTALRASNITVA
Ga0187812_11174321	3300017821	Freshwater Sediment	TQARTILANPALLPATGRTAYQAMLTDFITLAGLLQPGAHYGTTAQDYTAWYTALRATNITVA
Ga0187802_100193411	3300017822	Freshwater Sediment	VGSVANHLVFEADARTVRTQARTILANPALLPTEHRAAYVTMLNDFITVANMLQPGADYGTTAQDYTAWYTALRASNITVA
Ga0187802_104585081	3300017822	Freshwater Sediment	IAGALLNENQSGTVANHLVFEADARTMRAEARTILANPALLPATGRVGYEAMLNDFITVAIMLQPGPHYGTTAQDYTAWYGALRASNITVS
Ga0187807_10939522	3300017926	Freshwater Sediment	TTSALLPTVNRAAYQGMLHKFITVADMLQPGANYGTTDQDYTAWWAALSASNITVS
Ga0187879_104356062	3300017946	Peatland	HLIFEADARVVRSQAEKILATPSLLPRVHRAAYKRMLQKFITVADLLQPGAGYGTTAQDYAAWYDAMRASNITVW
Ga0187847_101213052	3300017948	Peatland	VEAHAPTVANNLVFDARVLRTEARTILRTPALLPTHNRAAYQQMLNDFITVANLLQPGPGYGTTPQDYTAWYQALNASNITVY
Ga0187783_100510631	3300017970	Tropical Peatland	ADARAVRTQARDILAHPALLPATGRTAYTAMLTDFITVANLLQPGPGYGTTTQDYTAWYTALRASNITIS
Ga0187783_106329752	3300017970	Tropical Peatland	FEADARAVRTQARDILAHPALLPATGRTAYTAMLTDFINLANLLQPGPGYGTTTQDYTAWYTALRASNITIS
Ga0187781_103621392	3300017972	Tropical Peatland	SQATTAANHLVFEADARTVRARARAILADPALLPATGRAAYRVMLDDFITVADMLQPGPDYGTTAQDYTAWYTALRASNITVS
Ga0187782_100928362	3300017975	Tropical Peatland	VIESQATTAANHLVFEADARTVRAQARAILADPALLPATGRAAYRVMLDDFITVADMLQPGPDYGTTAQDYTAWYTALRASNITVS
Ga0187816_102241991	3300017995	Freshwater Sediment	NHLVFEADARTVRTQARTILANPALLPTQHRAAYVTMLNDFITLANMLQPGAHYGTTAQDYTAWYTALRATNITIS
Ga0187815_104932381	3300018001	Freshwater Sediment	RTVRAQADKILATRALLPTHNRAAYQRMLKDFITVANLLQPGPGYGTTPQDYTAWYTALKASDITIW
Ga0187805_104115371	3300018007	Freshwater Sediment	TVRTQARTILANPALLPTEHRAAYVTMLNDFITVANMLQPGADYGTTAQDYTAWYTALRASNITVA
Ga0187805_104357711	3300018007	Freshwater Sediment	VRTQAQQILAHPALLPAIHRAAYVSMLNDFITLANMLQPGTRYGTTAQDYTAWYTALRASNITVA
Ga0187872_101834061	3300018017	Peatland	LVFEADARVVRGEAQRILANPALLPTVNRTGYEQMLSDFIVVANLLQPGPDYGTTAQDDAAWAAAMNASNINVS
Ga0187885_100860503	3300018025	Peatland	ANHLVFEADARVVRGEAQRILADPALLPTVNRAGYQQMLNDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNVNVS
Ga0187875_107302822	3300018035	Peatland	LEAENYSPTVANHLTFEADARTVRTQAAKILATPALLPAIHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYTALAASNITVA
Ga0187875_107463102	3300018035	Peatland	ARIVRAQARQILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYVAWYQALHASNITVY
Ga0187883_100806793	3300018037	Peatland	ANHLIFEADARVVRSQAEKILATPSLLPRVHRAAYKRMLQKFITVADLLQPGAGYGTTAQDYAAWYDAMRASNITVW
Ga0187862_105115113	3300018040	Peatland	TVANHLVFEADARVVRGGAQRILANPALLPTVNRTGYEQMLSDFIVVANLLQPGPDYGTTAQDDAAWAAAMNASNINVS
Ga0187887_104049582	3300018043	Peatland	ILGTPALLPNVNRAGYELMLRDFIVVANLLQPGPGYGTTAQDDTAWYAALSASNINVS
Ga0187887_108909861	3300018043	Peatland	RKILSTRALLPKHNLAAYKAMLNDFIVVANLLQPGPGYGTTHQDYVAWYKALNASNITVY
Ga0187851_102950091	3300018046	Peatland	RAEAQKILASPALLPTVNRAAYEGMLNDFTVVANLLQPGPGYGTTPQDYAAWDMAMHATNINVS
Ga0187851_106751201	3300018046	Peatland	TVGNHLVFEADARVVRAEARKILSTRALLPKHNLAAYKRMLNDFIVVANLLQPGPGYGTTHQDYVAWYKALNASNITVY
Ga0187851_108167882	3300018046	Peatland	SLAAALQTEAHAPTVANHLVFEADARVVRAEARKILFTRALLPKHNLAAYNTMLNDFITVANLLQPGPDYGTTPQDYVAWYQALHASNITVY
Ga0187784_101354022	3300018062	Tropical Peatland	VSGRGPLVIESHAATAANHLVFEADARTVRAQARAILADPALLPATGRAAYRVMLDDFITVADMLQPGPDYGTTAQDYTAWYTALRASNITVS
Ga0187784_106351201	3300018062	Tropical Peatland	FEADARTVRAQARTILADPALLPAVHRAAYVTMLNDFFTVANMLQPGPQYGTTAQDYTAWYTALRATNITIS
Ga0187772_103430011	3300018085	Tropical Peatland	TTVANHLVFEADARTVRSEARAILADPALLPAVHRAAYVTMLNDFITVANMLQPGPQYGTTTQDYTAWYAALRASNITVA
Ga0187769_111618031	3300018086	Tropical Peatland	ENQSDTAANHLTFEADARAVRAQARTILASPALLPNVNRAAYEHMLNDFITVATMLQPGPGYGTTAQDYTAWYAALRATNITVS
Ga0182031_12812863	3300019787	Bog	NHLIFEADARIVRAQARTILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYTAWYQALHASNITVY
Ga0210395_111047541	3300020582	Soil	ANHLAFEADARTVRTQAQKILATPALLPTHNHAAYERMLGDFITVANLLQPGPGYGTTPQDYAAWYTATQASDITVW
Ga0213874_103493392	3300021377	Plant Roots	TEDHAPTAANHLAFEADARVVRAQAEKILATPRLLPAHHRAGYKKMLREFITVANLLQPGAGYGTTPQDYTAWYAAMRASNITVW
Ga0213875_101990711	3300021388	Plant Roots	NHLVFEADARVVRAEAEKILATPALLPTVNRKAYERMLKDFITVANMLQPGPDYGTTAQDYAAWYTALRASNINVW
Ga0210393_108115271	3300021401	Soil	ANRLACEADARVVRAEAEHILATSALLPAVHRAEYKTMLNDFITVANLLQPGPGYGTTPQDYTAWNTALKASNITIW
Ga0210385_107319212	3300021402	Soil	DTLASALVIENQATTVANHLVFEAAARTVRTEARTILADPALLPATHRAAYVTMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA
Ga0210385_112606841	3300021402	Soil	HLVFEADARVVRAEAEKILHTSALLPTHNRAAYKQMLKDFITVANLLQPGPGYGTTPQDDVAWNTAMKASNITVW
Ga0210386_108026521	3300021406	Soil	RVVRAQAEHILATPALLPAVHRAEYQTMLTDFITVAGLLQPGPGYGTTPQDYTAWYAALHASNITVA
Ga0210391_112335411	3300021433	Soil	PTVANHLVFEADARIVRAEARKILATRALLPAVNQAAYERMLNDFITVANLLQPGPGYGTKTQDDTAWDAALIASNITVT
Ga0210390_107338591	3300021474	Soil	VDTLASALVIENQATTVANHLIFEADARTVRTEARTILANPALLPATHRAAYVTMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA
Ga0209529_10411161	3300027334	Forest Soil	VVRAQARQILAAPALLPAVHRAEYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNIIVA
Ga0209116_10976031	3300027590	Forest Soil	IFEADARTVRAQADKILATSALLPTVNRAAYQQMLHRFITVADMLQPGPGYGTTSQDDTAWSAAINASNIAVS
Ga0208324_11711602	3300027604	Peatlands Soil	RAQAQKIQADPALLPTVNQAAYQTMLNDFIVVANLLQPGPGYGTTAQDYTAWNAAMNATNINVS
Ga0209333_11637102	3300027676	Forest Soil	VKAQAAEILATSALLPTVHRAAYQTMLNDFITVANLLQPGPGYGTTPQDDTAWYAALAASNITVS
Ga0209530_10189601	3300027692	Forest Soil	VRAQADKILATSALLPTVNRAAYQQMLHRFITVADMLQPGPGYGTTPQDDTAWNTALAASNLTVS
Ga0209655_102716031	3300027767	Bog Forest Soil	VCLGHQAIGEAYGGRVVRAEATKILSTRALLPTHNRAAYQRMLKDFITVANLLQPGPDYGTTPQDYTAWNTALKASDITVW
Ga0209773_101838522	3300027829	Bog Forest Soil	VAGDLETEAHAPTVANHLVFETDARVMRAQALKILRTSALLPIHNRAAYKRMLNDFITVANLLQPGLGYGTRAQDNAAWLKALRASNIQVW
Ga0209166_101641621	3300027857	Surface Soil	ILAHPALLPATHRAAYQAMLNDFITLANLLQPGTHYGTTAQDYTAWYTALRASNITIS
Ga0209579_108185241	3300027869	Surface Soil	DVDTLASALVIENQVTTVANHLVFEAAARTVATQARTILADRALLPATHRTAYVTMLNDFISLAGLLQPGAHYGTTAQDYTAWYTALRATNITVS
Ga0209415_103777581	3300027905	Peatlands Soil	DVDTLASALVIENQATTVANHLVFEADARTVATQARTILAHPALLPATGRAAYVTMLNDFITVASLLQPGAHYGTTAQDYTAWYTALRATDITIA
Ga0209006_106134022	3300027908	Forest Soil	ILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNIIVA
Ga0302224_103352802	3300028759	Palsa	ANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS
Ga0302223_101345821	3300028781	Palsa	IVRTEANTILATRALLPTVNQAAYKLMLKDFITVANLLQPGPGYGTTPQDDTAWYAALSASNVTVA
Ga0302157_100838174	3300028813	Bog	RVVRGEAQRILADPPLLPTVNRAGYQQMLNDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNVNVS
Ga0302218_101850712	3300028863	Palsa	VFEADARIVRTEANTILATRALLPTVNQAAYKLMLKDFITVANLLQPGPGYGTTPQDDTAWYAALSASNVTVA
Ga0302235_100226014	3300028877	Palsa	ARKILSTRKLLPTVNEAAYKRMLNDFITVANLLQPGPGYGTTAQDYTAWYKALNASNINV
Ga0302235_101353992	3300028877	Palsa	TVANHLVFEADARIVKAQAAKILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNITVS
Ga0302229_100075129	3300028879	Palsa	VDALAGDLEIEAHAPTVANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS
Ga0311327_109289551	3300029883	Bog	VVRGGAQRILANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0311340_103358633	3300029943	Palsa	APTVANHLVFEADARTVRAQAAKILATPALLPAVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWFAALAASNITVS
Ga0311339_113561262	3300029999	Palsa	LRTPALLPKVNRARYERMLKDFIVVANLLQPGPGYGTTTQDDTAWYAALSASNITVS
Ga0302181_100341811	3300030056	Palsa	TILATPALLPAIHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYTALAASNITVA
Ga0302181_102678482	3300030056	Palsa	ANHLIFEADARTVRAQADKILATPALLPTINRAAYQHMLHSFVTVADMLQPGADYGTTSQDYTAWYAALNASNITVS
Ga0302184_100558983	3300030490	Palsa	NYSPTVANHLVFEADARIVKAQAAKILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNITVS
Ga0311357_103652511	3300030524	Palsa	LETESQSPTVANHLVFEADARVVRGGAQRILANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0311355_118838262	3300030580	Palsa	LEIEAHAPTVANHLIFEAVARTVRAQADKILATPALLPRVNRAAYQLMLHRFITVADLLQPGAGYGTASQDYAAWAAALDASDIAVS
Ga0311345_102676631	3300030688	Bog	ESQSPTVANHLVFEADARGVRGEAQRILADPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0170834_1071347861	3300031057	Forest Soil	QARTILANHALLPTVHRAAYVTMLNDFITVANMLQPGTHYGTTAQDYTAWYTALRASNITVA
Ga0302307_100340391	3300031233	Palsa	TVANHLVFEADARVVRGGAQRILANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0302325_104349273	3300031234	Palsa	AENYSPTVANHLTFEADARTVRTQAAKILATPALLPAVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYTALAASNITVA
Ga0302324_1008639261	3300031236	Palsa	GDLEIEAHAPTVANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS
Ga0310686_1074314112	3300031708	Soil	ENQATTVANHLVFEADARTVRTEARTILADPALLPAAHRAAYVTMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA
Ga0311301_109714521	3300032160	Peatlands Soil	RTVRTEARTILADPALLPTHPPRRLGHMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRATNITIT
Ga0311301_110181441	3300032160	Peatlands Soil	APTIANHLAFEADARTVRTQAHTILTTRTLLPTHNRAAYQRMLKDFITVANLLQPGPGYGTTPQDYTAWYTALKASNITIW
Ga0311301_124919232	3300032160	Peatlands Soil	ALLPARNQAAYQQMLHKFITLTDILQPGTRYGTTPQDYTAWWAALRASDITVS
Ga0335078_111487242	3300032805	Soil	VEAHAPTIANHVIFEADARVVRAQAEHILTTPALLPTEHLTAYKAMLTDFITVANLLQPGPGYGTTSQDYTAWYTALKASNITVW
Ga0335080_123050182	3300032828	Soil	ATPALLPTVHRAAYEQMLKDFIVVANLLQPGPGYGTTPQDYAAWDVAMRASNITVS
Ga0335072_117172012	3300032898	Soil	HLTFEADARVVRAQAEKILSTPALLPTRNRGAYEQMLKDFIVVSDLLQPGPGYGTTAQDWAAWDTAERASDITVW
Ga0335077_100186221	3300033158	Soil	SHAPTVANHLAFEADARTVRAQAEKILRTPALLPHHNRAAYQRMLRDFITVANLLQPGPGYGTTSQDYTAWYTALKASNITVW
Ga0335077_104895941	3300033158	Soil	VANHLVFEADARIVRAQAQKILANPALLPTVNRAAYQAMLNDFIVVANLLQPGPGYGTTPQDYTAWNAAMNATSITVS
Ga0334827_058551_1189_1389	3300034065	Soil	VVRAQARTILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYTAWYQALHASNITVY
Ga0370483_0132647_570_830	3300034124	Untreated Peat Soil	EIEAHAPTVANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071428

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences