Metagenome / Metatranscriptome Family F071512

Basic Information
Family ID	F071512
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	66 residues
Representative Sequence	AGARRLMTVSLGLLGRIDEAKESLASTLALQPDFSTDHVAYNTVFAAASDRSRFLRGLQRAGLRN
Number of Associated Samples	111
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.64 %
% of genes near scaffold ends (potentially truncated)	95.08 %
% of genes from short scaffolds (< 2000 bps)	88.52 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Most Common Taxonomy
Group	Bacteria (74.590 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.295 % of family members)
Environment Ontology (ENVO)	Unclassified (36.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.082 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.61% β-sheet: 0.00% Coil/Unstructured: 48.39%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.266.1.0: automated matches	d2nw8a_	2nw8	0.61648
a.1.1.0: automated matches	d2wtga_	2wtg	0.60895
a.1.1.2: Globins	d1asha_	1ash	0.60408
c.61.1.0: automated matches	d2e55a_	2e55	0.60351
c.61.1.1: Phosphoribosyltransferases (PRTases)	d1bd3a_	1bd3	0.59955

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00353	HemolysinCabind	14.75
PF00440	TetR_N	4.10
PF00486	Trans_reg_C	4.10
PF13414	TPR_11	4.10
PF00873	ACR_tran	1.64
PF08003	Methyltransf_9	1.64
PF03412	Peptidase_C39	1.64
PF02738	MoCoBD_1	1.64
PF00732	GMC_oxred_N	0.82
PF16868	NMT1_3	0.82
PF00563	EAL	0.82
PF01075	Glyco_transf_9	0.82
PF07969	Amidohydro_3	0.82
PF06233	Usg	0.82
PF13533	Biotin_lipoyl_2	0.82
PF13738	Pyr_redox_3	0.82
PF07719	TPR_2	0.82
PF13358	DDE_3	0.82
PF08241	Methyltransf_11	0.82
PF12850	Metallophos_2	0.82
PF14026	DUF4242	0.82
PF07311	Dodecin	0.82
PF01464	SLT	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.82
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.82
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.82
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.82
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.82
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.59 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.59 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.59 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.46 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.61 %
Unclassified	root	N/A	25.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.82 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.30 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.64 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.82 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.82 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.82 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.66 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.64 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.82 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	0.82 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.82 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.10 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.64 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.82 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.82 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.82 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	0.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Bradyrhizobium sp. SHOUNA76	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	2.46 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.64 %
Pseudomonas sp. GW704-F3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW704-F3	0.82 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.82 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.82 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.82 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.82 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	0.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2007427000\|2007436356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	842	Open in IMG/M
3300000787\|JGI11643J11755_11717069	Not Available	1278	Open in IMG/M
3300001213\|JGIcombinedJ13530_100954050	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300003659\|JGI25404J52841_10122237	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300004024\|Ga0055436_10077941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	942	Open in IMG/M
3300005164\|Ga0066815_10105749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	533	Open in IMG/M
3300005332\|Ga0066388_104888309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	681	Open in IMG/M
3300005344\|Ga0070661_100556311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	923	Open in IMG/M
3300005344\|Ga0070661_101027408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	684	Open in IMG/M
3300005363\|Ga0008090_15533882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1306	Open in IMG/M
3300005366\|Ga0070659_101161312	Not Available	682	Open in IMG/M
3300005367\|Ga0070667_100402808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1246	Open in IMG/M
3300005526\|Ga0073909_10064974	All Organisms → cellular organisms → Bacteria → Proteobacteria	1363	Open in IMG/M
3300005547\|Ga0070693_101180098	Not Available	587	Open in IMG/M
3300005617\|Ga0068859_100139359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2499	Open in IMG/M
3300005713\|Ga0066905_100551702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	967	Open in IMG/M
3300005764\|Ga0066903_100671682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1818	Open in IMG/M
3300005834\|Ga0068851_10504208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	726	Open in IMG/M
3300006041\|Ga0075023_100111770	Not Available	959	Open in IMG/M
3300006049\|Ga0075417_10200885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	944	Open in IMG/M
3300006051\|Ga0075364_10143103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1609	Open in IMG/M
3300006059\|Ga0075017_100775016	Not Available	740	Open in IMG/M
3300006174\|Ga0075014_100862364	Not Available	539	Open in IMG/M
3300006177\|Ga0075362_10739926	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300006577\|Ga0074050_11153536	Not Available	501	Open in IMG/M
3300006806\|Ga0079220_10327888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300006871\|Ga0075434_101831443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300006904\|Ga0075424_101916283	Not Available	626	Open in IMG/M
3300006914\|Ga0075436_100036662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3385	Open in IMG/M
3300006954\|Ga0079219_11073381	Not Available	679	Open in IMG/M
3300009101\|Ga0105247_10145021	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300009176\|Ga0105242_10163877	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300009176\|Ga0105242_11422362	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300009177\|Ga0105248_10393640	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300009177\|Ga0105248_10597636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1245	Open in IMG/M
3300009177\|Ga0105248_12175097	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300009177\|Ga0105248_12888341	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009545\|Ga0105237_12768865	Not Available	501	Open in IMG/M
3300009553\|Ga0105249_10102357	Not Available	2695	Open in IMG/M
3300009789\|Ga0126307_10273354	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300010041\|Ga0126312_11070561	Not Available	591	Open in IMG/M
3300010041\|Ga0126312_11070563	Not Available	591	Open in IMG/M
3300010042\|Ga0126314_10137442	All Organisms → cellular organisms → Bacteria → Proteobacteria	1694	Open in IMG/M
3300010045\|Ga0126311_10203554	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300010166\|Ga0126306_10933520	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300010229\|Ga0136218_1025525	Not Available	675	Open in IMG/M
3300010371\|Ga0134125_10221015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	2106	Open in IMG/M
3300010373\|Ga0134128_10168806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2471	Open in IMG/M
3300010375\|Ga0105239_12589743	Not Available	591	Open in IMG/M
3300010396\|Ga0134126_11800741	Not Available	671	Open in IMG/M
3300010398\|Ga0126383_10119045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2402	Open in IMG/M
3300010399\|Ga0134127_13707164	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300010403\|Ga0134123_10830133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	922	Open in IMG/M
3300011119\|Ga0105246_11050503	Not Available	741	Open in IMG/M
3300012485\|Ga0157325_1015938	Not Available	620	Open in IMG/M
3300012503\|Ga0157313_1063144	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300012505\|Ga0157339_1017208	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300012898\|Ga0157293_10004827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1868	Open in IMG/M
3300012906\|Ga0157295_10001527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	3213	Open in IMG/M
3300012924\|Ga0137413_10695505	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300012944\|Ga0137410_12023708	Not Available	512	Open in IMG/M
3300012957\|Ga0164303_10464266	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300012971\|Ga0126369_10729658	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300012984\|Ga0164309_10109078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1764	Open in IMG/M
3300012984\|Ga0164309_10525719	All Organisms → cellular organisms → Bacteria → Proteobacteria	910	Open in IMG/M
3300012985\|Ga0164308_10085135	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300012989\|Ga0164305_10002673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	7601	Open in IMG/M
3300013296\|Ga0157374_11063107	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300013296\|Ga0157374_11610807	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300013308\|Ga0157375_10763816	All Organisms → cellular organisms → Bacteria → Proteobacteria	1117	Open in IMG/M
3300014320\|Ga0075342_1200674	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300015373\|Ga0132257_101703020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M
3300015373\|Ga0132257_102326797	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300017959\|Ga0187779_10129075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1545	Open in IMG/M
3300018029\|Ga0187787_10272655	Not Available	625	Open in IMG/M
3300018422\|Ga0190265_12219039	Not Available	651	Open in IMG/M
3300021560\|Ga0126371_11508425	Not Available	800	Open in IMG/M
3300022901\|Ga0247788_1077699	Not Available	639	Open in IMG/M
3300023072\|Ga0247799_1006175	Not Available	1684	Open in IMG/M
3300025321\|Ga0207656_10173164	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300025899\|Ga0207642_10685139	Not Available	645	Open in IMG/M
3300025903\|Ga0207680_10786495	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300025913\|Ga0207695_10216239	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300025914\|Ga0207671_10078994	Not Available	2465	Open in IMG/M
3300025916\|Ga0207663_10114693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	1834	Open in IMG/M
3300025916\|Ga0207663_10270110	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300025921\|Ga0207652_10852431	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300025926\|Ga0207659_11210422	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300025930\|Ga0207701_10008451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	10167	Open in IMG/M
3300025930\|Ga0207701_11625558	Not Available	519	Open in IMG/M
3300025932\|Ga0207690_10476139	All Organisms → cellular organisms → Bacteria → Proteobacteria	1007	Open in IMG/M
3300025936\|Ga0207670_10113836	Not Available	1954	Open in IMG/M
3300025937\|Ga0207669_10218812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1396	Open in IMG/M
3300025941\|Ga0207711_10161831	All Organisms → cellular organisms → Bacteria	2027	Open in IMG/M
3300025942\|Ga0207689_11641601	Not Available	534	Open in IMG/M
3300026041\|Ga0207639_10183764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	1780	Open in IMG/M
3300026116\|Ga0207674_12100725	Not Available	529	Open in IMG/M
3300026752\|Ga0207473_102337	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300026757\|Ga0207605_100314	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300026761\|Ga0207495_101151	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300026841\|Ga0207490_1001622	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300026995\|Ga0208761_1035603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW704-F3	513	Open in IMG/M
3300027420\|Ga0207436_101719	Not Available	671	Open in IMG/M
3300027422\|Ga0207611_100135	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300027873\|Ga0209814_10068901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1485	Open in IMG/M
3300028784\|Ga0307282_10115873	All Organisms → cellular organisms → Bacteria → Proteobacteria	1253	Open in IMG/M
3300028802\|Ga0307503_10148056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1062	Open in IMG/M
3300028809\|Ga0247824_10974150	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300028812\|Ga0247825_10856070	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300028814\|Ga0307302_10370125	All Organisms → cellular organisms → Bacteria → Proteobacteria	707	Open in IMG/M
3300028824\|Ga0307310_10103661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1268	Open in IMG/M
3300031170\|Ga0307498_10003549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2606	Open in IMG/M
3300031446\|Ga0170820_15107185	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300031564\|Ga0318573_10170511	All Organisms → cellular organisms → Bacteria → Proteobacteria	1147	Open in IMG/M
3300031858\|Ga0310892_10011364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3648	Open in IMG/M
3300031894\|Ga0318522_10249690	All Organisms → cellular organisms → Bacteria → Proteobacteria	672	Open in IMG/M
3300032180\|Ga0307471_100690598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1185	Open in IMG/M
3300032421\|Ga0310812_10298653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	716	Open in IMG/M
3300032829\|Ga0335070_11390235	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300032897\|Ga0335071_10238674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1771	Open in IMG/M
3300033475\|Ga0310811_10374679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1578	Open in IMG/M
3300033550\|Ga0247829_11121440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.30%
Host-Associated	Host-Associated	36.89%
Engineered	Engineered	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.38%
Plants	Host-Associated → Plants	36.89%
Aquatic	Environmental → Aquatic	4.92%
Lab Enrichment	Engineered → Lab Enrichment	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.66%
Sediment	Environmental → Aquatic → Sediment	2.46%
Marine	Environmental → Aquatic → Marine	1.64%
Roots	Host-Associated → Plants → Roots	1.64%
Freshwater	Environmental → Aquatic → Freshwater	0.82%
Unclassified	Engineered → Lab Enrichment → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.03%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.02%
Loam	Environmental → Terrestrial → Soil → Loam	6.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.46%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.82%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.02%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.28%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.64%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.82%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.82%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.82%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.82%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.28%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.64%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.64%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Soil	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil	0.82%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2007427000	Uranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010229	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1	Engineered	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026752	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes)	Environmental	Open in IMG/M
3300026757	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K5-12 (SPAdes)	Environmental	Open in IMG/M
3300026761	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-11 (SPAdes)	Environmental	Open in IMG/M
3300026841	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027420	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-10 (SPAdes)	Environmental	Open in IMG/M
3300027422	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-10 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2007440380	2007427000	Groundwater	MTVSLGLLGRIDEAKQALAHTLKLQPDLSVDHVEKNTVFADWSDRSRFLLGLRKAGLDR
JGI11643J11755_117170693	3300000787	Soil	SLGLLGKIDEAQEALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
JGIcombinedJ13530_1009540502	3300001213	Wetland	HVGARRLMTVSLGLLDRADEAQESLTRTLTLQPNLSSDHVANDTVYANAADRSRFLLGLQKAGLKG*
JGI25404J52841_101222372	3300003659	Tabebuia Heterophylla Rhizosphere	VGAWRLMTVSLGLLGRLEEAREALAHTLTLQPDLSSDHVSKDTVFANAPDRSRFLLGLQRAGLKA*
Ga0055436_100779412	3300004024	Natural And Restored Wetlands	TLTVCRAMAARHPHHAGARRLMTVSLGLLERTDEARESLAHTLALQPDLSSDHVANNTVYADVSDRFRFLLGLQKAGLRD*
Ga0066815_101057492	3300005164	Soil	PHHAGAWRLMTVSLGLLGKIDEAKEALARTLSLQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLED*
Ga0066388_1048883091	3300005332	Tropical Forest Soil	LTALHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKK*
Ga0070661_1005563112	3300005344	Corn Rhizosphere	GAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAELKN*
Ga0070661_1010274082	3300005344	Corn Rhizosphere	GAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0008090_155338823	3300005363	Tropical Rainforest Soil	TVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKN*
Ga0070659_1011613121	3300005366	Corn Rhizosphere	GARRLMTVSLGLLGRIDEAKESLAHTLALRPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN*
Ga0070667_1004028081	3300005367	Switchgrass Rhizosphere	RRLMTVSLGLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAQASDRSRFLRGLQKAGLRN*
Ga0073909_100649743	3300005526	Surface Soil	ARHPNHAGARRLMTVSLGLLGRIDEAEESLANTLALQPDFSTDHVAYNTVFAHVSDRSRFLRGLQKAGLRN*
Ga0070693_1011800982	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RLMTVSLGLLGRIDEAKESLASTLALQPDFSTDHVAYNTVFAAASDRSRFLRGLQRAGLRN*
Ga0068859_1001393591	3300005617	Switchgrass Rhizosphere	GAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN*
Ga0066905_1005517022	3300005713	Tropical Forest Soil	VCRAYAALHPHHAGAWRLMTTSLGLLGKIDEAKEALARTLTLQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0066903_1006716822	3300005764	Tropical Forest Soil	GAWRLLTVSLGLLGRTDEAGQALAHTLTLQPDLTTAHVELNTAFAKSSDRSRFLLGLRKAGLKE*
Ga0068851_105042082	3300005834	Corn Rhizosphere	LHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0075023_1001117701	3300006041	Watersheds	YDETITVCRSMAARHPNHAGARRLMTVSLGMLGKTHEARDSLAHTLTLQPDLSSDHVANNTVYTNESDRSRFLLGLQKAGLRQ*
Ga0075417_102008852	3300006049	Populus Rhizosphere	TTSLGLLGKIDEAKEALARTLTLQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0075364_101431031	3300006051	Populus Endosphere	AWRLMTVSLGMLERTDEAKEALVRTLTMQPDLSSAHVANDTVYSDPDVRARFLEGLRRAGLKD*
Ga0075017_1007750163	3300006059	Watersheds	LMTVSLGMLGRTNEARDALAHTLTLQPDLSSDHVANNTVYTKASDRSRFLLGLQKAGLRQ
Ga0075014_1008623642	3300006174	Watersheds	MAARHPNHAGARRLMTVSLGMLGRTNEARDALAHTLTLQPDLSSDHVANNTVYTKASDRSRFLLGLQKAGLRQ*
Ga0075362_107399262	3300006177	Populus Endosphere	SGAWRLMTASLGLTGRIEDAKAALAQTLRLQPDFSSAHVERDSVFVQESDRARLLLGLQKAGLRD*
Ga0074050_111535361	3300006577	Soil	RLMTVSLGLLGRIDEAEESLANTLALQPDFSTDHVAYNTVFAHVSDRSRFLRGLQKAGLRN*
Ga0079220_103278882	3300006806	Agricultural Soil	MTVSLGLLGRIDEAKESLTSTLALQPDFSTDHVAYNTVFAHAADRSRFLRGLQRAGLRG*
Ga0075434_1018314431	3300006871	Populus Rhizosphere	LMTVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG
Ga0075424_1019162831	3300006904	Populus Rhizosphere	RLMTVSLGLLGRIDEAKESLTNTLALQPDFSTDHVAYNTVFADASDRSRFLRGLQKAGLRN*
Ga0075436_1000366621	3300006914	Populus Rhizosphere	CRSLTALHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0079219_110733811	3300006954	Agricultural Soil	AGARRLMTVSLGLLGRIDEAKESLASTLALQPDFSTDHVAYNTVFAAASDRSRFLRGLQRAGLRN*
Ga0105247_101450211	3300009101	Switchgrass Rhizosphere	TVSLGLLGKIDEARESLMQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0105242_101638771	3300009176	Miscanthus Rhizosphere	TVSLGLLGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSTDRSRFLLGLQKAGLKH*
Ga0105242_114223621	3300009176	Miscanthus Rhizosphere	ARYPNHAGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG*
Ga0105248_103936402	3300009177	Switchgrass Rhizosphere	LGLIGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0105248_105976361	3300009177	Switchgrass Rhizosphere	AGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0105248_121750972	3300009177	Switchgrass Rhizosphere	AGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN*
Ga0105248_128883412	3300009177	Switchgrass Rhizosphere	SHPNHAGAWRLMTVSLGLLGRIDEAEDALAHTLTLQPDLASAHVEMNTVYANPQERSRFREGLRKAGLKN*
Ga0105237_127688652	3300009545	Corn Rhizosphere	MTVSLGLLGKIDEARESLMQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0105249_101023571	3300009553	Switchgrass Rhizosphere	RRLMTVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG*
Ga0126307_102733541	3300009789	Serpentine Soil	ALHPHHAGAWRLMTVSLALLGRIDEAKEALAHTLTLQPDLSSAHVTNNTVFADPADRARFLLGLQKAGLEN*
Ga0126312_110705611	3300010041	Serpentine Soil	VCRSTAALHPHHAGAWRLMTVSLALLGRIDEAKEALAHTLTLQPDLSSAHVTNNTVFADPADRARFLLGLQKAGLEN*
Ga0126312_110705631	3300010041	Serpentine Soil	VCRSTAALHPHHAGAWRLMTVSLALLGRIDEAKEALAHTLTLQPDLSSAHVANNTVFADPADRARFLLGLQKAGLEN*
Ga0126314_101374421	3300010042	Serpentine Soil	LHPNHTGAWRLMTVSLGLLDRIDEAKQALAHTLTLQPDLSSAHVEKNTVFANAVDRSQFLLGLRKAGLKN*
Ga0126311_102035544	3300010045	Serpentine Soil	VSLALLGRIDEAKEALAHTLTLQPDLSSAHVANNTVFADPADRARFLLGLQKAGLEN*
Ga0126306_109335202	3300010166	Serpentine Soil	AWRLMTVSLGLLDRIDEAKQALAHTLTLQPDLSSAHVEKNTVFASAVDRSQFLLGLRKAGLKN*
Ga0136218_10255252	3300010229	Soil	FALARYADTIDVCRETIATHPHHAGAWRLMTVSLALLGKTDEAKVALARTLSLQPDLSISHVETNTVYAKPEDRXXXXX
Ga0134125_102210153	3300010371	Terrestrial Soil	LHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN*
Ga0134128_101688064	3300010373	Terrestrial Soil	HAGARRLMTVSLGLLGRIDEAKESLASTLALQPDFSTDHVAYNTVFAAASDRSRFLRGLQRAGLRN*
Ga0105239_125897432	3300010375	Corn Rhizosphere	RYPNHAGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD*
Ga0134126_118007412	3300010396	Terrestrial Soil	RLMTVSLGLLGKIDEANECLARTLTLQPDLSGSHVVNATVYAGEDDRSRFLLGLRRAGLSS*
Ga0126383_101190453	3300010398	Tropical Forest Soil	WRLMTVSLGLLGRTDEAGQALAHTLTLQPDLTTAHVELNTAFAKSSDRSRFLLGLRKAGLKH*
Ga0134127_137071641	3300010399	Terrestrial Soil	HPNHAGAWRLMTVSLGLLGRIDEAEDALAHTLTLQPDLASAHVEMNTVYANPQERSRFLEGLRKAGLKN*
Ga0134123_108301331	3300010403	Terrestrial Soil	VSLGLLGRIDEARQALAHTLTLQPDLSLSHVEKNTVFANPSDRSRFLLGLQRAGLKD*
Ga0105246_110505032	3300011119	Miscanthus Rhizosphere	SLGLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAQASDRSRFLRGLQKAGLRN*
Ga0157325_10159381	3300012485	Arabidopsis Rhizosphere	HAGARRLMTVSLGLRGRIDEAKESLDQTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG*
Ga0157313_10631442	3300012503	Arabidopsis Rhizosphere	HAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN*
Ga0157339_10172082	3300012505	Arabidopsis Rhizosphere	VSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG*
Ga0157293_100048274	3300012898	Soil	HPNHAGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD*
Ga0157295_100015275	3300012906	Soil	CRSVAARYPNHAGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD*
Ga0137413_106955052	3300012924	Vadose Zone Soil	MTVSLGMLGRIDEAKEALARTRVLHPDLSLAHVEKDTVYADPADRARFLQGLRSAGLQD*
Ga0137410_120237082	3300012944	Vadose Zone Soil	EETITVCRSMAARYPNHAGARRLMTVSLGLLGRADEAGESLEQTLTLQPDLSSDHVARSTVYANASDRSRFLLGLQKAGLRD*
Ga0164303_104642662	3300012957	Soil	MAARHPNHAGSRRLLTVSLGLLGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSTDRSRFLLGLQKAGLKH*
Ga0126369_107296582	3300012971	Tropical Forest Soil	YPHHAGAWRLMTVSLGLLGKIDEAREALARTLVLQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKN*
Ga0164309_101090782	3300012984	Soil	HPNHAGAWRLMTVSLGLLERLDEASESLAHTLTLQPDLSSDHVANNTVYANASDRSRFLSGLQKAGLRD*
Ga0164309_105257192	3300012984	Soil	HAGARRLLTVSLGLLERIDEAHECLADTLTLHPDLSSDHVANHTVYTNPSDRDRFLLGLQKAGLRD*
Ga0164308_100851352	3300012985	Soil	GSRRLMTVSLGLLGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSTDRSRFLLGLQKAGLKH*
Ga0164305_100026736	3300012989	Soil	LGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN*
Ga0157374_110631071	3300013296	Miscanthus Rhizosphere	HDGSRRLMTVSLGLLGKIDEARESLMQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0157374_116108071	3300013296	Miscanthus Rhizosphere	AWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0157375_107638162	3300013308	Miscanthus Rhizosphere	LGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0075342_12006741	3300014320	Natural And Restored Wetlands	HVGCWRLMTVSLGLLGRIDEAKQPLAHARSLQPDLSLNHVEKNTVYVDPADRARFLQGLRNAGLQD*
Ga0132257_1017030202	3300015373	Arabidopsis Rhizosphere	VSLGLLGRTEEAKESLASTLALRPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN*
Ga0132257_1023267972	3300015373	Arabidopsis Rhizosphere	GAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKT*
Ga0187779_101290753	3300017959	Tropical Peatland	IALHPNHAGAWRLMTVSLGLLDRTAEAKEALARTLELMPDLSSAHVANDTVYVDPAVRARFLEGLQKAGLKN
Ga0187787_102726551	3300018029	Tropical Peatland	RYPNHAGTRRLMTVSLGLLGRTGEAEQSLEHTLALQPNLSSAHVENDTVYVNPLDRSRFLLGLRSAGLRH
Ga0190265_122190391	3300018422	Soil	LITVSLGLLGRIEEAKQALAHTLTLQPDLSGDHVEKNTVFANPSDRSRFLLGLRNAGLKG
Ga0126371_115084251	3300021560	Tropical Forest Soil	ALGGYEETVSVCRSMAARHPNHAGARRLMTVSLGLLGKIDEAREALAQTLVLQPDLSSGHVANNTVYTNPSDRSRFLKGLQNAGLKH
Ga0247788_10776991	3300022901	Soil	NHAGARRLMTVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD
Ga0247799_10061752	3300023072	Soil	RRLMTVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG
Ga0207656_101731642	3300025321	Corn Rhizosphere	LHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN
Ga0207642_106851391	3300025899	Miscanthus Rhizosphere	NHAGSRRLLTVSLGLLGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSTDRSRFLLGLQKAGLKH
Ga0207680_107864951	3300025903	Switchgrass Rhizosphere	TALHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN
Ga0207695_102162392	3300025913	Corn Rhizosphere	LGLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0207671_100789941	3300025914	Corn Rhizosphere	RSVSARQTNHAGARRLMTVSLGLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0207663_101146931	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	SLTALHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN
Ga0207663_102701102	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HVGARRLMTVSLGLLDREDEARESLIRTLTLQPSLSSDHVANDTVYSNAADRSRFLLGLQKAGLKG
Ga0207652_108524312	3300025921	Corn Rhizosphere	RLLTVSLGLLGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSTDRSRFLLGLQKAGLK
Ga0207659_112104222	3300025926	Miscanthus Rhizosphere	LGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN
Ga0207701_100084511	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG
Ga0207701_116255582	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD
Ga0207690_104761391	3300025932	Corn Rhizosphere	CRSLTALHPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN
Ga0207670_101138361	3300025936	Switchgrass Rhizosphere	HPNHAGARRLMTVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG
Ga0207669_102188122	3300025937	Miscanthus Rhizosphere	RHPNHAGSRRLMTVSLGLLGKIDEARESLMQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH
Ga0207711_101618311	3300025941	Switchgrass Rhizosphere	SLGLIGKIDEARESLMQTLALQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH
Ga0207689_116416012	3300025942	Miscanthus Rhizosphere	GLLGRIDEAKESLAHTLALRPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0207639_101837642	3300026041	Corn Rhizosphere	LGLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKN
Ga0207674_121007251	3300026116	Corn Rhizosphere	TAARHPNHAGARRLMTVSLGLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAQASDRSRFLRGLQKAGLRN
Ga0207473_1023371	3300026752	Soil	ARYPNHAGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD
Ga0207605_1003142	3300026757	Soil	RLMTVSLGLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLR
Ga0207495_1011511	3300026761	Soil	GLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0207490_10016221	3300026841	Soil	YHHVEASLLGRIDEAKESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0208761_10356032	3300026995	Soil	MTVSLGLLGKIDEAKEALARTLSLQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLED
Ga0207436_1017192	3300027420	Soil	AGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD
Ga0207611_1001351	3300027422	Soil	RRLMTVSLGLLGRIDEATESLANTLALQPDFSTDHVAYNTVFAHASDRSRFLRGLQKAGLRN
Ga0209814_100689012	3300027873	Populus Rhizosphere	ETIAVCRAYAALHPHHAGAWRLMTTSLGLLGKIDEAKEALARTLTLQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD
Ga0307282_101158731	3300028784	Soil	TVAVCRSLTALHPHHAGAWRLMTVSLGLLGKIDEAGEALSRTLALQPDLSSAHVVHDTVFVNPNDRARFLLGLQNAGLKD
Ga0307503_101480563	3300028802	Soil	AWRLMTVSLGLLGRIDEARQALAHTLTLQPDLSLSHVEKNTVFANPSDRSRFLVGLQRAGLKD
Ga0247824_109741502	3300028809	Soil	EKHPHHAGAWRLMTVSLGLLGRTDEASAALAHTRTLQPDLSSAHVEKDTVFADPSVRARFLEGLRKAGMEN
Ga0247825_108560702	3300028812	Soil	HPHHAGAWRLMTVSLGLLGRTDEASAALAHTRTLQPDLSSAHVEKDTVFADPSVRARFLEGLRKAGMEN
Ga0307302_103701251	3300028814	Soil	TGALGLLGKIDEAREALSSTLALQPDFSSAHVADNTVFANSDDRARFLLGLRRAGLKD
Ga0307310_101036611	3300028824	Soil	HAGAWRLMTVSLGLLERIDEAKEALAHTLTLQPDLSGAHVANDTVFANPADRSRFLEGLRKAGLKD
Ga0307498_100035493	3300031170	Soil	SLTALHPHHAGAWRLMTVSLGLLGKIDEAGEALSRTLALQPDLSSAHVVHDTVFVNPNDRARFLLGLQNAGLKD
Ga0170820_151071851	3300031446	Forest Soil	GLLGKIDEARESLMQTLTLQPDLSSDHVANNTVYVNSSDRSCFLLGLQKAGLKH
Ga0318573_101705111	3300031564	Soil	LTALYPHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTNDTVFVNSNDRARFLQGLLNAGLKN
Ga0310892_100113643	3300031858	Soil	NHAGARRLMTVSLGLLGRIDEAKESLDHTLALQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRG
Ga0318522_102496901	3300031894	Soil	PHHAGAWRLMTVSLGLLGKIDEAREALARTLALQPDLSSAHVTNDTVFVNSNDRARFLQGLLNAGLKN
Ga0307471_1006905983	3300032180	Hardwood Forest Soil	HAGARRLMTVSLGLLGRTDEAKESLANTLALRPDFSTEHVASNTVFAAASDRSRFLRGLQRAGLRN
Ga0310812_102986531	3300032421	Soil	MAARHPNHAGSRRLMTVSLGLLGKIDEARESLMQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH
Ga0335070_113902351	3300032829	Soil	GLLDRVDEARDSLAHTITLQPNLSSDHVTNDTVYAKASDRSRFLIGLQKAGLQG
Ga0335071_102386741	3300032897	Soil	TISVCRSVIAMHPNHAGAWRLMTVSLGLLGRLHDAKAALARTLELQPDLSNAHVIHDTAYANPDDRARFLEGLQKAGLRN
Ga0310811_103746791	3300033475	Soil	EQTISVCRSIAARHPNHAGAWRLMTVSLGLLERLDEASESLAHTLTLQPDLSSDHVANNTVYANASDRSRFLSGLQKAGLRD
Ga0247829_111214402	3300033550	Soil	SWRLMTVSLGLLGRIDEARQALAHTLSLQPDLSLNHVEKNTVFANPTDRSRFLLGLQKAGLKD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071512

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign