Metagenome Family F071531

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071531
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	39 residues
Representative Sequence	MANVIEFYVPVRFRKPVKWVPQQQRGRVLEFPVAQKRTA
Number of Associated Samples	91
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.80 %
% of genes near scaffold ends (potentially truncated)	10.66 %
% of genes from short scaffolds (< 2000 bps)	66.39 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.262 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (15.574 % of family members)
Environment Ontology (ENVO)	Unclassified (31.967 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.902 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.96% β-sheet: 0.00% Coil/Unstructured: 91.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00158	Sigma54_activat	32.79
PF02954	HTH_8	13.93
PF00196	GerE	9.84
PF02518	HATPase_c	2.46
PF07730	HisKA_3	2.46
PF00106	adh_short	0.82
PF05193	Peptidase_M16_C	0.82
PF01292	Ni_hydr_CYTB	0.82
PF02775	TPP_enzyme_C	0.82
PF04542	Sigma70_r2	0.82
PF03050	DDE_Tnp_IS66	0.82
PF01209	Ubie_methyltran	0.82
PF13186	SPASM	0.82
PF06296	RelE	0.82
PF13620	CarboxypepD_reg	0.82
PF01740	STAS	0.82
PF00115	COX1	0.82
PF00589	Phage_integrase	0.82
PF00342	PGI	0.82
PF05951	Peptidase_M15_2	0.82
PF07883	Cupin_2	0.82
PF14537	Cytochrom_c3_2	0.82
PF13669	Glyoxalase_4	0.82
PF00326	Peptidase_S9	0.82
PF13492	GAF_3	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	2.46
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	2.46
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	2.46
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	2.46
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.82
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.82
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.82
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.82
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.82
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.82
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.82
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.82
COG3038	Cytochrome b561	Energy production and conversion [C]	0.82
COG3108	Uncharacterized conserved protein YcbK, DUF882 family	Function unknown [S]	0.82
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.82
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.82
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.82
COG4737	Uncharacterized conserved protein	Function unknown [S]	0.82
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.26 %
Unclassified	root	N/A	5.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.26 %
Unclassified	root	N/A	5.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.26 %
Unclassified	root	N/A	5.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.70 %
Unclassified	root	N/A	5.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	31.97 %
Unclassified	root	N/A	5.74 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	30.33 %
Unclassified	root	N/A	5.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30.33 %
Unclassified	root	N/A	5.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.74 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	3.28 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	3.28 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.64 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.74 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	3.28 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2.46 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.64 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.74 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	3.28 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2.46 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.64 %
Granulicella sp. GAS466	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	0.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17402371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1495	Open in IMG/M
2170459003\|FZ032L002FZHNQ	Not Available	510	Open in IMG/M
2170459024\|GZTSFBX01DZ1N2	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_12311294	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101745818	All Organisms → cellular organisms → Bacteria → Proteobacteria	1206	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101910733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2993	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1065901	Not Available	534	Open in IMG/M
3300000650\|AP72_2010_repI_A1DRAFT_1002151	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300000955\|JGI1027J12803_100997750	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300000955\|JGI1027J12803_104947382	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300001867\|JGI12627J18819_10437682	Not Available	534	Open in IMG/M
3300003218\|JGI26339J46600_10017924	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2055	Open in IMG/M
3300003218\|JGI26339J46600_10042805	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1238	Open in IMG/M
3300003218\|JGI26339J46600_10057623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1023	Open in IMG/M
3300003219\|JGI26341J46601_10011753	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2868	Open in IMG/M
3300003219\|JGI26341J46601_10043677	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300003219\|JGI26341J46601_10051271	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1289	Open in IMG/M
3300003223\|JGI26343J46809_1017941	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	557	Open in IMG/M
3300003368\|JGI26340J50214_10023519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1883	Open in IMG/M
3300004114\|Ga0062593_100308021	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1355	Open in IMG/M
3300004152\|Ga0062386_100264896	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300004479\|Ga0062595_100313034	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1067	Open in IMG/M
3300004480\|Ga0062592_102323537	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300004633\|Ga0066395_10080961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1521	Open in IMG/M
3300005093\|Ga0062594_101930846	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300005290\|Ga0065712_10385888	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005332\|Ga0066388_100027670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	5215	Open in IMG/M
3300005332\|Ga0066388_100359140	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2103	Open in IMG/M
3300005332\|Ga0066388_100709583	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1611	Open in IMG/M
3300005332\|Ga0066388_106258258	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005434\|Ga0070709_10157306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1577	Open in IMG/M
3300005434\|Ga0070709_10967908	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	676	Open in IMG/M
3300005436\|Ga0070713_100226562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1697	Open in IMG/M
3300005436\|Ga0070713_100993043	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	809	Open in IMG/M
3300005437\|Ga0070710_10639326	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300005437\|Ga0070710_10731926	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005614\|Ga0068856_100356241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1482	Open in IMG/M
3300005616\|Ga0068852_101687584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	656	Open in IMG/M
3300005764\|Ga0066903_100296574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2553	Open in IMG/M
3300005841\|Ga0068863_100048940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4008	Open in IMG/M
3300005844\|Ga0068862_101312793	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300006028\|Ga0070717_10307353	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300006047\|Ga0075024_100098503	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300006059\|Ga0075017_101515220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	528	Open in IMG/M
3300006162\|Ga0075030_100298364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1288	Open in IMG/M
3300006173\|Ga0070716_101810630	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006174\|Ga0075014_100007123	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3693	Open in IMG/M
3300006174\|Ga0075014_100096478	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300006176\|Ga0070765_100047457	All Organisms → cellular organisms → Bacteria	3482	Open in IMG/M
3300006176\|Ga0070765_100320763	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1436	Open in IMG/M
3300006237\|Ga0097621_101715664	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300006358\|Ga0068871_102134303	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	534	Open in IMG/M
3300006904\|Ga0075424_100825260	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	989	Open in IMG/M
3300010043\|Ga0126380_10106057	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300010047\|Ga0126382_10342195	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010048\|Ga0126373_11694833	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300010048\|Ga0126373_12140555	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300010362\|Ga0126377_10141675	All Organisms → cellular organisms → Bacteria	2249	Open in IMG/M
3300010376\|Ga0126381_100173758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2854	Open in IMG/M
3300012948\|Ga0126375_10069057	All Organisms → cellular organisms → Bacteria	1972	Open in IMG/M
3300012960\|Ga0164301_10509549	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300012971\|Ga0126369_13534400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300012984\|Ga0164309_10234994	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300013296\|Ga0157374_12373802	Not Available	558	Open in IMG/M
3300013296\|Ga0157374_12562222	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300014200\|Ga0181526_10839103	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300014325\|Ga0163163_10301026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1656	Open in IMG/M
3300014838\|Ga0182030_10050557	All Organisms → cellular organisms → Bacteria	6634	Open in IMG/M
3300015371\|Ga0132258_10088045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7270	Open in IMG/M
3300015372\|Ga0132256_102592143	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300015373\|Ga0132257_101198268	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300017823\|Ga0187818_10418353	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300017932\|Ga0187814_10036303	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
3300017947\|Ga0187785_10291756	Not Available	746	Open in IMG/M
3300017995\|Ga0187816_10052078	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300018044\|Ga0187890_10890274	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300021420\|Ga0210394_10112703	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300021439\|Ga0213879_10051009	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300021441\|Ga0213871_10055459	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300021478\|Ga0210402_10071728	All Organisms → cellular organisms → Bacteria	3066	Open in IMG/M
3300021560\|Ga0126371_10037077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4603	Open in IMG/M
3300021560\|Ga0126371_10047425	All Organisms → cellular organisms → Bacteria	4100	Open in IMG/M
3300024179\|Ga0247695_1076790	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300025904\|Ga0207647_10032894	All Organisms → cellular organisms → Bacteria	3326	Open in IMG/M
3300025915\|Ga0207693_10838678	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300026023\|Ga0207677_10058996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2645	Open in IMG/M
3300027502\|Ga0209622_1000737	All Organisms → cellular organisms → Bacteria	4326	Open in IMG/M
3300027548\|Ga0209523_1002938	All Organisms → cellular organisms → Bacteria	2645	Open in IMG/M
3300027812\|Ga0209656_10004848	All Organisms → cellular organisms → Bacteria	8652	Open in IMG/M
3300027812\|Ga0209656_10030549	All Organisms → cellular organisms → Bacteria	3197	Open in IMG/M
3300027812\|Ga0209656_10036682	All Organisms → cellular organisms → Bacteria	2857	Open in IMG/M
3300027825\|Ga0209039_10385546	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300027911\|Ga0209698_10008231	All Organisms → cellular organisms → Bacteria	10801	Open in IMG/M
3300027911\|Ga0209698_10099122	All Organisms → cellular organisms → Bacteria → Acidobacteria	2441	Open in IMG/M
3300027915\|Ga0209069_10081410	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300031231\|Ga0170824_105915570	Not Available	600	Open in IMG/M
3300031446\|Ga0170820_16393490	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300031708\|Ga0310686_104603492	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300031720\|Ga0307469_10663744	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300031823\|Ga0307478_10000963	All Organisms → cellular organisms → Bacteria	26843	Open in IMG/M
3300032770\|Ga0335085_10011268	All Organisms → cellular organisms → Bacteria → Acidobacteria	13287	Open in IMG/M
3300032770\|Ga0335085_10012771	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12349	Open in IMG/M
3300032770\|Ga0335085_11619372	Not Available	670	Open in IMG/M
3300032782\|Ga0335082_10080250	All Organisms → cellular organisms → Bacteria	3281	Open in IMG/M
3300032805\|Ga0335078_10191369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	2852	Open in IMG/M
3300032805\|Ga0335078_10392327	All Organisms → cellular organisms → Bacteria	1826	Open in IMG/M
3300032829\|Ga0335070_10000129	All Organisms → cellular organisms → Bacteria	85971	Open in IMG/M
3300032829\|Ga0335070_10000594	All Organisms → cellular organisms → Bacteria → Acidobacteria	40650	Open in IMG/M
3300032829\|Ga0335070_10001850	All Organisms → cellular organisms → Bacteria	24526	Open in IMG/M
3300032829\|Ga0335070_10003625	All Organisms → cellular organisms → Bacteria	18040	Open in IMG/M
3300032829\|Ga0335070_10246760	All Organisms → cellular organisms → Bacteria	1752	Open in IMG/M
3300032829\|Ga0335070_10408670	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300032892\|Ga0335081_10472035	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300032893\|Ga0335069_10000369	All Organisms → cellular organisms → Bacteria → Acidobacteria	75761	Open in IMG/M
3300032893\|Ga0335069_10759119	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300032897\|Ga0335071_10195643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1975	Open in IMG/M
3300032897\|Ga0335071_10842099	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300032955\|Ga0335076_10003786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15234	Open in IMG/M
3300033158\|Ga0335077_11344771	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300033402\|Ga0326728_10000142	All Organisms → cellular organisms → Bacteria	291011	Open in IMG/M
3300033402\|Ga0326728_10011484	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20188	Open in IMG/M
3300033983\|Ga0371488_0004399	All Organisms → cellular organisms → Bacteria	14028	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.07%
Host-Associated	Host-Associated	13.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.75%
Aquatic	Environmental → Aquatic	21.31%
Plants	Host-Associated → Plants	13.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.30%
Freshwater	Environmental → Aquatic → Freshwater	14.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.38%
Sediment	Environmental → Aquatic → Sediment	6.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.10%
Peat	Environmental → Terrestrial → Peat	2.46%
Roots	Host-Associated → Plants → Roots	2.46%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.21%
Loam	Environmental → Terrestrial → Soil → Loam	16.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.28%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.46%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.39%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.28%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.46%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	15.57%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	10.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.38%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.28%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.46%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.82%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.82%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.82%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.82%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003223	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00193020	2088090014	Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFPLAQKRTA
E4A_03801590	2170459003	Grass Soil	MAKVIEFYVPARFRKVVKWLPQQQRGQLLEFAAAQKRTA
FD1_09565900	2170459024	Grass Soil	MTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQKRTA
ICChiseqgaiiFebDRAFT_123112942	3300000363	Soil	MTNVIEFYVPVRFRKAVKWVPQQQQHGRVLEFPVAHKRTA*
INPhiseqgaiiFebDRAFT_1017458183	3300000364	Soil	MAKVIEFYVPARFRKSVKWVPQPERGRILEFHVIQKKSA*
INPhiseqgaiiFebDRAFT_1019107332	3300000364	Soil	MAKVIEFYVPARFRKPVKWVPQDERGRILEFHMVQKKTA*
AP72_2010_repI_A01DRAFT_10659012	3300000579	Forest Soil	MANVIEFYIPVRFRKPVKWVPQQQRGRVLEFTVAQKRTA*
AP72_2010_repI_A1DRAFT_10021512	3300000650	Forest Soil	MANVIEFYVPVRFRRTVKWVHPQQRGRVLEFLSPQKRTA*
JGI1027J12803_1009977502	3300000955	Soil	MANVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQQRTA*
JGI1027J12803_1049473822	3300000955	Soil	MANAIEFYTPVRFRRAVKWVPQQQRGRVLEFPVEQKRTA*
JGI12627J18819_104376822	3300001867	Forest Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFVLPQKRTA*
JGI26339J46600_100179241	3300003218	Bog Forest Soil	MANVIEFYIPVRFRKAVKWAPQQQRGRVLEFPVAQKRTA*
JGI26339J46600_100428053	3300003218	Bog Forest Soil	MANVIEFYVPARFRKVVKWVPQQQRGRVLEFPVAQKRTA*
JGI26339J46600_100576232	3300003218	Bog Forest Soil	MTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFAVAQKRTA*
JGI26341J46601_100117532	3300003219	Bog Forest Soil	MTNVIEFYVPVRFRKAVKWVPQQRRGQVLEFPVAQKRTA*
JGI26341J46601_100436772	3300003219	Bog Forest Soil	MANVIEFYIPIRFRKAVKWVPQPQRGGVLEFPMAQKRTA*
JGI26341J46601_100512712	3300003219	Bog Forest Soil	MANVIEFYVPVRFRKPVKWVPQQHRGRVLEFPLAQKRTA*
JGI26343J46809_10179412	3300003223	Bog Forest Soil	MTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQKRTA*
JGI26340J50214_100235191	3300003368	Bog Forest Soil	MTNVIEFYVPVRFRKAAKWVPQQQRGRVLEFPVAQKRTA*
Ga0062593_1003080211	3300004114	Soil	MPNVIEFYVPVRFRKAVKWVPQQQRGRVLEFRVAPKANRVTSPDQ
Ga0062386_1002648962	3300004152	Bog Forest Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFLLPQKRTA*
Ga0062595_1003130342	3300004479	Soil	MAKVIEFYVPARFRKVVKWVPQEERGRVLEFAVAQKRTA*
Ga0062592_1023235371	3300004480	Soil	MPNVIEFYVPVRFRKAVKWVPQQQRGRVLEFRVAPKANRVTSPDQKAS*
Ga0066395_100809612	3300004633	Tropical Forest Soil	MTNVIEFYVPVRFRKAVKWVPQQQRGRVIEFPVAQKRTA*
Ga0062594_1019308462	3300005093	Soil	MAKVIEFYVPVRLRKVVKWMPQQQRARVLEFAVAQKRTA*
Ga0065712_103858881	3300005290	Miscanthus Rhizosphere	MAKVIEFYVPAGFRKVVKVVPPQERGQVLEFAVAQKRSA*
Ga0066388_1000276703	3300005332	Tropical Forest Soil	MANVIEFYIPVRFRKSAKWVPQQQRGRVIEFAAAQKRTA*
Ga0066388_1003591403	3300005332	Tropical Forest Soil	MANVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVTQKRTA*
Ga0066388_1007095833	3300005332	Tropical Forest Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFLIRQKRTA*
Ga0066388_1062582582	3300005332	Tropical Forest Soil	MANIIEFYVPVRFRKAVKWVHPQQRGRVLEFLLPQKRTA*
Ga0070709_101573062	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MANVIEFYVPVRFRKTVKWVHPQQRGRVLEFPLAQKRTA*
Ga0070709_109679082	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MANVIEFYIPVRFRKAVKWVPQQQRGRVLEFPVAQKRTA*
Ga0070713_1002265621	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTNVIEFYVPVRFRKAVKWVPQQQRGRILEFPVAQKRTA*
Ga0070713_1009930432	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MANVIEFYIPVRFRKAVKWVPQLQRGRVLEFPVAQKRTA*
Ga0070710_106393261	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MAKVIEFYVPVRFRKVLKWVPQQQRGRVLEFPVAQKRTA*
Ga0070710_107319262	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MANVIEFYVPVRFRKTVKWVHPQQRGRVLEFLLPQKRTA*
Ga0068856_1003562413	3300005614	Corn Rhizosphere	MAKVIEFYVPAGFRKVVKVVPPQERGKVLEFAVAQKRSA*
Ga0068852_1016875841	3300005616	Corn Rhizosphere	MAKVIEFYVPIRFRKVVKWMPQQQRARVLEFAVAQKRTA*
Ga0066903_1002965744	3300005764	Tropical Forest Soil	MANVIEFYVPVRFRKPVKWVPQQQRGRVLEFPVAQKRTA*
Ga0068863_1000489405	3300005841	Switchgrass Rhizosphere	MAKVIEFYVPARFRKVVKWVPQQERGQVLEFAVAQKRSA*
Ga0068862_1013127931	3300005844	Switchgrass Rhizosphere	MTNVIEFYVPVRFRKAVKWAPQQQRGRVLEFPVAQKRTA*
Ga0070717_103073532	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAKVIEFYVPARFRKVVKWAPQQERGRVLEFAVTQKRTA*
Ga0075024_1000985033	3300006047	Watersheds	MTNVIEFYVPARFRKAVKWVPQQQRGRVLEFPVAQKRTA*
Ga0075017_1015152201	3300006059	Watersheds	MTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQK
Ga0075030_1002983641	3300006162	Watersheds	MANVIEFYVPARFRKVVKWVPEQQRGRVLEFPVAQKRTA*
Ga0070716_1018106301	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MANVIEFYVPVRFRKAVKWVHQQQRSRVLEFPVAQKRTA*
Ga0075014_1000071235	3300006174	Watersheds	NMTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQKRTA*
Ga0075014_1000964781	3300006174	Watersheds	MTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQKR
Ga0070765_1000474572	3300006176	Soil	MAKVIEFYVPARFRKGVKWVPQRERGRMLEFAVAQKRTA*
Ga0070765_1003207631	3300006176	Soil	MAKVIEFYVPVRFRKVLNWVPQQQRGRVLEFPVRQKRTA*
Ga0097621_1017156641	3300006237	Miscanthus Rhizosphere	MPNVIEFYVPVRFRKTVKWVHPQQRGRVLEFPLAQKRTA*
Ga0068871_1021343032	3300006358	Miscanthus Rhizosphere	MTNVIEFYVPVRFRKAVKWVPQQQSGRVLEFPVAQKRTA*
Ga0075424_1008252601	3300006904	Populus Rhizosphere	MAKVIEFYVPVRFRKVLKWVPQQQRGRVLEFRVAQKRTA*
Ga0126380_101060572	3300010043	Tropical Forest Soil	MANVIEYYVPVRFRKAVKWVPPQQRGRVLEFLLPQKRTA*
Ga0126382_103421952	3300010047	Tropical Forest Soil	MANVIEFYVPVRFRKAVKWVPQRQRGRVLEFPVAQKRTA*
Ga0126373_116948332	3300010048	Tropical Forest Soil	MANVIEFYIPVRFRKAVKWVPQQQRGRVLEFPVVQKRTA*
Ga0126373_121405551	3300010048	Tropical Forest Soil	NMANVIEFYVPVRFRKAVKWVPQQQRGRVLEFPLAQKRTA*
Ga0126377_101416754	3300010362	Tropical Forest Soil	MANVIEYCVPVRFRKAVKWVPPQQRGRVLEFLLPQKRTA*
Ga0126381_1001737581	3300010376	Tropical Forest Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFSVPQKRTA*
Ga0126375_100690573	3300012948	Tropical Forest Soil	MANVIEFYVPVRFRKHVKWVPQQQRGRILEFPLAQKRTA*
Ga0164301_105095491	3300012960	Soil	TEVVMAKVIEFYIPARFRKAVKWVPQQQRGRVLEFPVAQKQTA*
Ga0126369_135344002	3300012971	Tropical Forest Soil	MAKVIEFYVPARFRKPVKWVPQEDRGRILEFHVVHKKTA*
Ga0164309_102349943	3300012984	Soil	MAKVIEFYIPARFRKAVKWVPQQQRGRVLEFPVAQKQTA*
Ga0157374_123738021	3300013296	Miscanthus Rhizosphere	MTNVIEFYVPVRFRKAVKWVRQQQRGRVLEFPVAQKRTA*
Ga0157374_125622222	3300013296	Miscanthus Rhizosphere	MANVIEFYVPVRFRKAVKWVHQQQRGRVLEFPVAQKRTA*
Ga0181526_108391032	3300014200	Bog	MTNMIEFYVPVRFRKAVKWVPQQQRGRVLEFPVAQKRTA*
Ga0163163_103010262	3300014325	Switchgrass Rhizosphere	MAKVIEFYVPARFRKPVKWVPENERGRILEFPVIQKKTA*
Ga0182030_100505572	3300014838	Bog	MANVIEFYIPVRFRKAVKWVPQQQRGRVLEFRVAQKRTA*
Ga0132258_100880451	3300015371	Arabidopsis Rhizosphere	MEKVIEFYVPARFRKPVKWVPQDERGRILEFHMVQKKTA*
Ga0132256_1025921432	3300015372	Arabidopsis Rhizosphere	MANVIEFYIPVRFRKAVKWVHPQQRGRVLEFVLPQKRTA*
Ga0132257_1011982682	3300015373	Arabidopsis Rhizosphere	MANVIEFYVPVRFRKAVKWVPQQQRGRVLEFRVAPKANRVTSPDQKAS*
Ga0187818_104183531	3300017823	Freshwater Sediment	MANVIEFYIPVRFRKAVKWVPQQQRGRVLEFPVAQKRTA
Ga0187814_100363031	3300017932	Freshwater Sediment	MANVIEFYIPVRFRKAAKWVPQQQRGRVLEFPVAQKRTA
Ga0187785_102917561	3300017947	Tropical Peatland	AMAKVIEFYVPARFRKPVKWVPQEERGRILEFHAIQKKSA
Ga0187816_100520782	3300017995	Freshwater Sediment	MANVIEFYIPVRFRRAVKWVPQQQRGRVLEFPVAQKRTA
Ga0187890_108902742	3300018044	Peatland	MANVIEFYVPARFRKVVKWVPQQQRGRVLEFPVAQKRTA
Ga0210394_101127032	3300021420	Soil	MAKVIKFYVPARFRKILKWVPQQQRGRVLEFPVAQSRTA
Ga0213879_100510092	3300021439	Bulk Soil	IEARSSNMANVIEFYVPVRFRKAVKWVHPQQRGRVLEFLVPQKRTA
Ga0213871_100554592	3300021441	Rhizosphere	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFLLPQKRTA
Ga0210402_100717284	3300021478	Soil	MAKVIEFYVPARFRKVVKWVPQQQRGRVLEFQAAQKRTA
Ga0126371_100370773	3300021560	Tropical Forest Soil	MAKLIEFYVPRNFRKPSKWVPREDRGRILEFHVVQKKTA
Ga0126371_100474254	3300021560	Tropical Forest Soil	MTNVIEFYVPVRFRKAVKWVPQQQRGRVIEFPVAQKRTA
Ga0247695_10767901	3300024179	Soil	ANVIEFYIPVRFRKAVKWVPQQQRGRVLGFPVSQKRTA
Ga0207647_100328943	3300025904	Corn Rhizosphere	MAKVIEFYVPAGFRKVVKVVPPQERGQVLEFAVAQKRSA
Ga0207693_108386781	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAKVIEFYVPARFRKVVKWAPQQERGRVLEFAVTQKRTA
Ga0207677_100589965	3300026023	Miscanthus Rhizosphere	MAKVIEFYVPVRLRKVVKWMPQQQRARVLEFAVAQKRTA
Ga0209622_10007373	3300027502	Forest Soil	MANVIEFYVPARFRKAVKWVHPQQRGRVLEFSLPQKRTA
Ga0209523_10029385	3300027548	Forest Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFVLPQKRTA
Ga0209656_1000484811	3300027812	Bog Forest Soil	MANVIEFYIPIRFRKAVKWVPQPQRGGVLEFPMAQKRTA
Ga0209656_100305492	3300027812	Bog Forest Soil	MANVIEFYVPVRFRKPVKWVPQQHRGRVLEFPLAQKRTA
Ga0209656_100366823	3300027812	Bog Forest Soil	MTNVIEFYVPVRFRKAAKWVPQQQRGRVLEFPVAQKRTA
Ga0209039_103855462	3300027825	Bog Forest Soil	MTNVIEFYVPVRFRKAVKWVPQQRRGQVLEFPVAQKRTA
Ga0209698_1000823111	3300027911	Watersheds	MANVIEFYVPVRFRKAVKWVPQQQRGRVLEFPAAQKRTA
Ga0209698_100991224	3300027911	Watersheds	MANVIEFYVPARFRKVVKWVPEQQRGRVLEFPVAQKRTA
Ga0209069_100814102	3300027915	Watersheds	MTNVIEFYVPARFRKAVKWVPQQQRGRVLEFPVAQKRTA
Ga0170824_1059155702	3300031231	Forest Soil	MAKVIEFYVPARFRKVVKWLPQQERGQVLEFAAAQKRTA
Ga0170820_163934902	3300031446	Forest Soil	MAKVIEFYVPARFRKVVKWLPQQERGQVLEFAAAHKRTA
Ga0310686_1046034922	3300031708	Soil	MAKVIEFYVPTRFRKILKWVPQQQRGRVLEFSVVQKRTA
Ga0307469_106637441	3300031720	Hardwood Forest Soil	VTRRLVMAKVIEFYVPVRFRKVLKWVPQQERGRVLEFPVAQKRTA
Ga0307478_1000096310	3300031823	Hardwood Forest Soil	MAKVNEFYVPARFRKILKSVPQQQRGRVLEFSVVQKRTA
Ga0335085_100112686	3300032770	Soil	MANVIEFYIPVRSRKAVKWVPQQQRGRVLEFAVAQKRTA
Ga0335085_100127719	3300032770	Soil	MTNVIEFYVPVRFRKAVKWVPQQQRGRVLEFRVPQKRTA
Ga0335085_116193722	3300032770	Soil	MAKVIEFYVPARFRKPVKWVPQEERGRILEFHVLQKKSA
Ga0335082_100802504	3300032782	Soil	NVIEFYIPVRFRKAAKWVPQQQRGRVLEFPVAQKRTA
Ga0335078_101913694	3300032805	Soil	MANVIEFYVPARFRKVVKWVPQQQRGRVLEFPLAQKRTA
Ga0335078_103923272	3300032805	Soil	MANVIEFYIPVRFRKATKWVPQQQRGRVLEFAVVQKRTA
Ga0335070_1000012944	3300032829	Soil	MANVIESYIPVRFRKATKWVPQQQRGRVLEFAVVQKRTA
Ga0335070_100005944	3300032829	Soil	MAKVIEFYVPSRFRKAVKWVHPQQRGRVLEFPMAQKRTA
Ga0335070_100018508	3300032829	Soil	MANVIEFYVPVRFRKTVKWVHPQQRGRVLEFLIPQKRTA
Ga0335070_100036258	3300032829	Soil	MANVIEFYVPVRFRKTVKWVHPQQRGRVLEFLLQQKRTA
Ga0335070_102467602	3300032829	Soil	MANVIEFYIPVRFRKAAKWVPQQQRGRVLEFPVPQKRTA
Ga0335070_104086702	3300032829	Soil	MANVIEFYVPVRFRKSVKWVHPQQRGRVLEFSVPQKRTA
Ga0335081_104720353	3300032892	Soil	MANVIEFYVPVRFRKAVKWVLPQQRGRVLEFVLPQKRTA
Ga0335069_100003695	3300032893	Soil	MANLIEFYIPVRYRKPVKWVPQQQRGRILEFARAQKRTA
Ga0335069_107591192	3300032893	Soil	MANVIEFYVPVRFRKSVKWVHPQQRGRVLEFLLPQKRTA
Ga0335071_101956434	3300032897	Soil	MANVIEFYIPVRFRKAVKWVPQQQHGRVLEFPSSAK
Ga0335071_108420992	3300032897	Soil	MANVIEFYVPVRFRKAVKWVHPQQRGRVLEFLLPQKQTA
Ga0335076_100037868	3300032955	Soil	MAKVIAFYVPARFRKVVKWVPQQQRGRVLEFPVAQKRTA
Ga0335077_113447712	3300033158	Soil	MANVIEFYIPVRFRKAMKWVPQQQRGRVLKFPVAQKRTA
Ga0326728_10000142261	3300033402	Peat Soil	MANLIEFYVPARFRKVVKWVPQQQRGRVLEFPVAQKRTA
Ga0326728_1001148422	3300033402	Peat Soil	MANVIEFYIPVRFRKAVKWVPQEQRGRVLEFPVAQKRTA
Ga0371488_0004399_1_111	3300033983	Peat Soil	VIEFYIPVRFRKAVKWVPQEQRGRVLEFPVAQKRTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071531

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences