Metagenome / Metatranscriptome Family F071576

Basic Information
Family ID	F071576
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	45 residues
Representative Sequence	MKDLAMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Number of Associated Samples	105
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.54 %
% of genes near scaffold ends (potentially truncated)	57.38 %
% of genes from short scaffolds (< 2000 bps)	86.07 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Unclassified (52.459 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.607 % of family members)
Environment Ontology (ENVO)	Unclassified (30.328 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.459 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.95% β-sheet: 0.00% Coil/Unstructured: 82.05%
Feature Viewer

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Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01649	Ribosomal_S20p	75.41
PF00133	tRNA-synt_1	11.48
PF06574	FAD_syn	9.02
PF01926	MMR_HSR1	1.64
PF12697	Abhydrolase_6	0.82
PF07715	Plug	0.82
PF08264	Anticodon_1	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	75.41
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	11.48
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	11.48
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	11.48
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	11.48
COG0196	FAD synthase	Coenzyme transport and metabolism [H]	9.02

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
All Organisms	root	All Organisms	47.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
cellular organisms	root	All Organisms → cellular organisms	47.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	41.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	41.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	41.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	41.80 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10193619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	822	Open in IMG/M
3300001867\|JGI12627J18819_10296652	Not Available	651	Open in IMG/M
3300002245\|JGIcombinedJ26739_100509828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1080	Open in IMG/M
3300002245\|JGIcombinedJ26739_101252565	Not Available	632	Open in IMG/M
3300002678\|Ga0005477J37265_117648	Not Available	515	Open in IMG/M
3300004631\|Ga0058899_11966505	Not Available	668	Open in IMG/M
3300004633\|Ga0066395_10347922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	823	Open in IMG/M
3300005179\|Ga0066684_10276502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1109	Open in IMG/M
3300005332\|Ga0066388_104279760	Not Available	728	Open in IMG/M
3300005332\|Ga0066388_106899355	Not Available	572	Open in IMG/M
3300005534\|Ga0070735_10065828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2348	Open in IMG/M
3300005554\|Ga0066661_10073019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2007	Open in IMG/M
3300005591\|Ga0070761_10124310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1499	Open in IMG/M
3300005764\|Ga0066903_102278289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1046	Open in IMG/M
3300005921\|Ga0070766_10060725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2150	Open in IMG/M
3300006173\|Ga0070716_100134471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1568	Open in IMG/M
3300006175\|Ga0070712_100283771	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M
3300006176\|Ga0070765_102050180	Not Available	535	Open in IMG/M
3300009826\|Ga0123355_10885554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	974	Open in IMG/M
3300010046\|Ga0126384_11344202	Not Available	664	Open in IMG/M
3300010048\|Ga0126373_11209103	Not Available	822	Open in IMG/M
3300010359\|Ga0126376_12689811	Not Available	547	Open in IMG/M
3300010361\|Ga0126378_13173761	Not Available	523	Open in IMG/M
3300010401\|Ga0134121_10119010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2229	Open in IMG/M
3300011120\|Ga0150983_11092735	Not Available	557	Open in IMG/M
3300012205\|Ga0137362_11176081	Not Available	651	Open in IMG/M
3300012362\|Ga0137361_10783255	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	868	Open in IMG/M
3300012930\|Ga0137407_10204401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1773	Open in IMG/M
3300012948\|Ga0126375_10771943	Not Available	757	Open in IMG/M
3300012971\|Ga0126369_10411747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1392	Open in IMG/M
3300012971\|Ga0126369_13503444	Not Available	514	Open in IMG/M
3300012985\|Ga0164308_10737411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	853	Open in IMG/M
3300014157\|Ga0134078_10169488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	871	Open in IMG/M
3300016341\|Ga0182035_10794754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	830	Open in IMG/M
3300016341\|Ga0182035_12172833	Not Available	503	Open in IMG/M
3300016371\|Ga0182034_10094097	Not Available	2127	Open in IMG/M
3300016387\|Ga0182040_10107007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1911	Open in IMG/M
3300017926\|Ga0187807_1110984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	865	Open in IMG/M
3300017927\|Ga0187824_10225505	Not Available	644	Open in IMG/M
3300017937\|Ga0187809_10322435	Not Available	574	Open in IMG/M
3300017959\|Ga0187779_10020264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3787	Open in IMG/M
3300017970\|Ga0187783_10408476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	986	Open in IMG/M
3300017974\|Ga0187777_10179533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1421	Open in IMG/M
3300018064\|Ga0187773_10068400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1680	Open in IMG/M
3300020170\|Ga0179594_10136512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	901	Open in IMG/M
3300020170\|Ga0179594_10215329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	721	Open in IMG/M
3300020579\|Ga0210407_10889671	Not Available	683	Open in IMG/M
3300021358\|Ga0213873_10212996	Not Available	602	Open in IMG/M
3300021372\|Ga0213877_10267003	Not Available	572	Open in IMG/M
3300021402\|Ga0210385_10080596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2235	Open in IMG/M
3300021432\|Ga0210384_10072564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3098	Open in IMG/M
3300021444\|Ga0213878_10312345	Not Available	676	Open in IMG/M
3300021476\|Ga0187846_10107545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1197	Open in IMG/M
3300021477\|Ga0210398_10052500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3346	Open in IMG/M
3300021477\|Ga0210398_10153800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1872	Open in IMG/M
3300021478\|Ga0210402_10475911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1160	Open in IMG/M
3300021560\|Ga0126371_11572487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	784	Open in IMG/M
3300021560\|Ga0126371_12832360	Not Available	588	Open in IMG/M
3300021560\|Ga0126371_13759765	Not Available	512	Open in IMG/M
3300022504\|Ga0242642_1076238	Not Available	559	Open in IMG/M
3300022522\|Ga0242659_1139079	Not Available	509	Open in IMG/M
3300025939\|Ga0207665_11127002	Not Available	626	Open in IMG/M
3300026295\|Ga0209234_1151473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	822	Open in IMG/M
3300026316\|Ga0209155_1001985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9531	Open in IMG/M
3300027071\|Ga0209214_1048591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	574	Open in IMG/M
3300027576\|Ga0209003_1046466	Not Available	767	Open in IMG/M
3300027576\|Ga0209003_1102820	Not Available	540	Open in IMG/M
3300027633\|Ga0208988_1087448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	778	Open in IMG/M
3300027663\|Ga0208990_1123715	Not Available	700	Open in IMG/M
3300027826\|Ga0209060_10331851	Not Available	693	Open in IMG/M
3300027853\|Ga0209274_10648249	Not Available	545	Open in IMG/M
3300027855\|Ga0209693_10139539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1198	Open in IMG/M
3300027867\|Ga0209167_10410280	Not Available	739	Open in IMG/M
3300027867\|Ga0209167_10615462	Not Available	594	Open in IMG/M
3300028808\|Ga0302228_10101622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1346	Open in IMG/M
3300029636\|Ga0222749_10778692	Not Available	523	Open in IMG/M
3300029636\|Ga0222749_10810807	Not Available	512	Open in IMG/M
3300029997\|Ga0302302_1221580	Not Available	705	Open in IMG/M
3300030853\|Ga0075372_10832158	Not Available	519	Open in IMG/M
3300031122\|Ga0170822_13663531	Not Available	528	Open in IMG/M
3300031543\|Ga0318516_10403226	Not Available	788	Open in IMG/M
3300031545\|Ga0318541_10040558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2354	Open in IMG/M
3300031545\|Ga0318541_10075325	All Organisms → cellular organisms → Bacteria → Proteobacteria	1777	Open in IMG/M
3300031549\|Ga0318571_10104398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	932	Open in IMG/M
3300031549\|Ga0318571_10169544	Not Available	765	Open in IMG/M
3300031561\|Ga0318528_10018194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3323	Open in IMG/M
3300031564\|Ga0318573_10311429	Not Available	843	Open in IMG/M
3300031668\|Ga0318542_10191363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1029	Open in IMG/M
3300031668\|Ga0318542_10364039	Not Available	744	Open in IMG/M
3300031679\|Ga0318561_10337322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	826	Open in IMG/M
3300031682\|Ga0318560_10184907	Not Available	1111	Open in IMG/M
3300031718\|Ga0307474_11150687	Not Available	614	Open in IMG/M
3300031719\|Ga0306917_10051653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2770	Open in IMG/M
3300031723\|Ga0318493_10043079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2107	Open in IMG/M
3300031736\|Ga0318501_10456382	Not Available	694	Open in IMG/M
3300031765\|Ga0318554_10690257	Not Available	573	Open in IMG/M
3300031770\|Ga0318521_10069131	All Organisms → cellular organisms → Bacteria → Proteobacteria	1876	Open in IMG/M
3300031780\|Ga0318508_1165531	Not Available	630	Open in IMG/M
3300031782\|Ga0318552_10228224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	944	Open in IMG/M
3300031805\|Ga0318497_10261336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	961	Open in IMG/M
3300031820\|Ga0307473_11354780	Not Available	534	Open in IMG/M
3300031846\|Ga0318512_10605943	Not Available	559	Open in IMG/M
3300031859\|Ga0318527_10262517	Not Available	734	Open in IMG/M
3300031859\|Ga0318527_10426478	Not Available	565	Open in IMG/M
3300031890\|Ga0306925_10210565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2097	Open in IMG/M
3300031897\|Ga0318520_10551505	Not Available	714	Open in IMG/M
3300031897\|Ga0318520_10984749	Not Available	532	Open in IMG/M
3300031942\|Ga0310916_10690493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	864	Open in IMG/M
3300031947\|Ga0310909_10409284	Not Available	1139	Open in IMG/M
3300031962\|Ga0307479_12169611	Not Available	502	Open in IMG/M
3300032008\|Ga0318562_10505207	Not Available	701	Open in IMG/M
3300032035\|Ga0310911_10598076	Not Available	640	Open in IMG/M
3300032066\|Ga0318514_10019300	All Organisms → cellular organisms → Bacteria → Proteobacteria	3077	Open in IMG/M
3300032068\|Ga0318553_10271580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	886	Open in IMG/M
3300032076\|Ga0306924_10334570	All Organisms → cellular organisms → Bacteria → Proteobacteria	1737	Open in IMG/M
3300032805\|Ga0335078_11831119	Not Available	658	Open in IMG/M
3300032829\|Ga0335070_10176694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2146	Open in IMG/M
3300032897\|Ga0335071_12149054	Not Available	501	Open in IMG/M
3300032898\|Ga0335072_11073531	Not Available	730	Open in IMG/M
3300033004\|Ga0335084_11675835	Not Available	625	Open in IMG/M
3300033158\|Ga0335077_11357094	Not Available	687	Open in IMG/M
3300033290\|Ga0318519_10075691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1758	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.36%
Host-Associated	Host-Associated	1.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.90%
Aquatic	Environmental → Aquatic	2.46%
Arthropoda	Host-Associated → Arthropoda	0.82%
Plants	Host-Associated → Plants	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.44%
Freshwater	Environmental → Aquatic → Freshwater	2.46%
Peat	Environmental → Terrestrial → Peat	1.64%
Cave	Environmental → Terrestrial → Cave	0.82%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.75%
Loam	Environmental → Terrestrial → Soil → Loam	20.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.20%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.82%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.20%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.82%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.10%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.28%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.28%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.46%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.64%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.82%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.82%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002678	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF126 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300030853	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_101936193	3300001867	Forest Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRERPPPKAS*
JGI12627J18819_102966522	3300001867	Forest Soil	MKDLAMNEKARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKTS*
JGIcombinedJ26739_1005098283	3300002245	Forest Soil	MNPNPKTSIPVPVIPTPLKLRPAARRQHLLEMMRARVPRERASPKAP*
JGIcombinedJ26739_1012525652	3300002245	Forest Soil	MSVNDKVRIPVPVVPTPLKLRPAARRQHLLEMMRARVPHDRAAPKAP*
Ga0005477J37265_1176482	3300002678	Forest Soil	MKDVVMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS*
Ga0058899_119665052	3300004631	Forest Soil	MNVNDKVRIPTPVVPTPLKLRPAARRQHLLEMMRARVPSAPALPKKS*
Ga0066395_103479223	3300004633	Tropical Forest Soil	MKDVAAKDLAMKDNARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPK
Ga0066684_102765021	3300005179	Soil	MSAANSKASIPIPVIPTPLKLRPAARRQHLLEMMRARVPLDR
Ga0066388_1042797601	3300005332	Tropical Forest Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRAPVKRDRPPPKAS*
Ga0066388_1068993552	3300005332	Tropical Forest Soil	MKDLAMKDNATRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS*
Ga0070735_100658281	3300005534	Surface Soil	MRSNEKLRIPVPVIPTPLKLRPAARRQHLLEMMRARVPERAAPKPS*
Ga0066661_100730194	3300005554	Soil	MSANDKLGIPVPVIPTPLKLRPAARRQHLLEMMRARVPRDRAPPKAS*
Ga0070761_101243101	3300005591	Soil	MSVNDKVRIPIPVVPTPLKLRPAARRQHLLEMMRARVPHDRAPPKAP*
Ga0066903_1022782891	3300005764	Tropical Forest Soil	MSMNEKVRIPVPIPVIPTPLKLRPAARRQHLLDLMRARVPLDRA
Ga0070766_100607251	3300005921	Soil	MSVNDKVRIPIPVVPTPLKLRPAARRQHLLEMMRARVPHDRAAPKAP*
Ga0070716_1001344713	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVAAKDPAMKDNARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPK
Ga0070712_1002837713	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVAAKDPAMKDNARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKNS*
Ga0070765_1020501802	3300006176	Soil	MNVNDKVRIPSPVVPTPLKLRPAARRQHLLDMMRARVPSAPALPK
Ga0123355_108855543	3300009826	Termite Gut	MGIKEKARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLARSPHDRAPPKAP*
Ga0126384_113442021	3300010046	Tropical Forest Soil	MNATEKTTPRIPIPVVPTPLKLRPAARRQHLLDLMRARLPEPRS
Ga0126373_112091032	3300010048	Tropical Forest Soil	MKDLAMKDNKARVPVAVIPIPLKLRPAARRQHLLEMMRARVPLDRAPPKTS*
Ga0126376_126898112	3300010359	Tropical Forest Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRA
Ga0126378_131737612	3300010361	Tropical Forest Soil	MKDVAMKEKAHVPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0134121_101190104	3300010401	Terrestrial Soil	MTDKVRIPVPVIPTPLKLRPAARRQHLLDMMRARV
Ga0150983_110927352	3300011120	Forest Soil	MKDNLAMKDNKARIPVPVIPTPLKLRPAARRQHLLELMRARVPLDRAPPKTS*
Ga0137362_111760811	3300012205	Vadose Zone Soil	MSAANPKASIPVPVIPTPLKLRPAARRQHLLEMMRAR
Ga0137361_107832553	3300012362	Vadose Zone Soil	MMSAANSKASIPVPVIPTPLKLRPAARRQHLLEMMRARVPLD
Ga0137407_102044011	3300012930	Vadose Zone Soil	MMSAANPKASIPVPIIPTPLKLRPAARRQHLLEMMRARVPL
Ga0126375_107719431	3300012948	Tropical Forest Soil	MKDVAMKDKAARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAP
Ga0126369_104117473	3300012971	Tropical Forest Soil	MKDVAMKDKAARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLD
Ga0126369_135034441	3300012971	Tropical Forest Soil	DVAAKDLAMKDNARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKNS*
Ga0164308_107374113	3300012985	Soil	MNANDKVRIPIPVIPTPLKLRPAARRQHLLELMRARVPAGRAPPR
Ga0134078_101694883	3300014157	Grasslands Soil	MSANDKLGIPVPVIPTPLKLRPAARRQHLLEMMRARVPRDRAP
Ga0182035_107947543	3300016341	Soil	MKELVMKDKPRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRA
Ga0182035_121728332	3300016341	Soil	MKDKAARIPVPVIPTPLKLRPAARRQHLLEMMRARV
Ga0182034_100940971	3300016371	Soil	MKDLVMKDKLRIPVPVIPTPLKLRPAARRQHLLEM
Ga0182040_101070074	3300016387	Soil	MKDAAMKDKAHIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTP
Ga0187807_11109841	3300017926	Freshwater Sediment	MKDLAMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0187824_102255051	3300017927	Freshwater Sediment	MNVNDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRERPPPKAS
Ga0187809_103224351	3300017937	Freshwater Sediment	MKDVAMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0187779_100202644	3300017959	Tropical Peatland	MNATQKTPSIPIPVVATPLKLRPAARRQHLLDLMRARLPEPRSLPRKS
Ga0187783_104084763	3300017970	Tropical Peatland	MSANEKPGIPIPVVPTPLKLRPAARRQHLLDLMRARVPRD
Ga0187777_101795333	3300017974	Tropical Peatland	MKDVAAKDLAMKDNARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDR
Ga0187773_100684001	3300018064	Tropical Peatland	MNTNGKNRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRGRAPPKAS
Ga0179594_101365121	3300020170	Vadose Zone Soil	MSAANSKASIPVPVIPTPLKLRPAARRQHLLEMMRARVPLD
Ga0179594_102153293	3300020170	Vadose Zone Soil	MSAANPKASIPVPIIPTPLKLRPAARRQHLLEMMRA
Ga0210407_108896711	3300020579	Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRDRPPPKAS
Ga0213873_102129961	3300021358	Rhizosphere	MNTNEKPRIPAPVIPTPLKLGPAARRQHLLAMMRAHLTRRPPPKKS
Ga0213877_102670031	3300021372	Bulk Soil	MSANDKVRIPVPVIPTPLKLRPAARRQHLLEMMRARV
Ga0210385_100805961	3300021402	Soil	MSVNDKVRIPIPVVPTPLKLRPAARRQHLLEMMRARVPHDRAAPKAP
Ga0210384_100725641	3300021432	Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRERPPPKAS
Ga0213878_103123451	3300021444	Bulk Soil	MNANQKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRERPPPKA
Ga0187846_101075453	3300021476	Biofilm	MNANDKTRIPTPIVPTPLKLRPAARRQFLLEMMRARVPRERPPPKAS
Ga0210398_100525001	3300021477	Soil	MNGNEKSRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRDRAPPKAS
Ga0210398_101538001	3300021477	Soil	MNPNPKTSIPVPVIPTPLKLRPAARRQHLLEMMRARVPRERASPK
Ga0210402_104759113	3300021478	Soil	MSANKASIPVPVIPTPLKLRPAARRQHLLEMMRSRVRD
Ga0126371_115724873	3300021560	Tropical Forest Soil	MKDLAMKEKAARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKTS
Ga0126371_128323601	3300021560	Tropical Forest Soil	MKDVAMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRVPPKTS
Ga0126371_137597651	3300021560	Tropical Forest Soil	MNVNDKVRIPTPVVPTPLKLRPAARRQHLLDLMRARVPSAP
Ga0242642_10762382	3300022504	Soil	MKDVVMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0242659_11390791	3300022522	Soil	MNANDKTRIPTPVVPTPLKLRPAARWQFLLEMMRARVPRERPPPKAS
Ga0207665_111270021	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKDVAAKDPAMKDNARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKNS
Ga0209234_11514731	3300026295	Grasslands Soil	MSVANSKASIPIPVIPTPLKLRPAARRQHLLEMMRARVP
Ga0209155_10019859	3300026316	Soil	MSANDKLGIPVPVIPTPLKLRPAARRQHLLEMMRARVPRDRAPPKAS
Ga0209214_10485911	3300027071	Forest Soil	MNVTEKTPRIPIPVVPTPLKLRPAARRQHLLDLMRARLPEPRDLA
Ga0209003_10464662	3300027576	Forest Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRAPVKRDRPPAKAS
Ga0209003_11028201	3300027576	Forest Soil	MKDNVKVRIPVPVIPTPLKLRPAARRQHLLEMMRA
Ga0208988_10874481	3300027633	Forest Soil	MSAANPKASIPIPVIPTPLKLRPAARRQHLLEMMRARVPL
Ga0208990_11237153	3300027663	Forest Soil	MSAANPKASIPIPVIPTPLKLRPAARRQHLLEMMRARVPLDRSPPKTS
Ga0209060_103318511	3300027826	Surface Soil	MNANEKLRTPAPVIPTPLKLRPAARRQHLLEMMRARATIARPAPRKS
Ga0209274_106482491	3300027853	Soil	MKMSDKTRIPTPVVPTPLKLRPAARRQFLLEMMRSRVPQLRGSPR
Ga0209693_101395393	3300027855	Soil	MNVNDKVRIPTPVVPTPLKLRPAARRQHLLEMMRARVPSAPALPKKS
Ga0209167_104102801	3300027867	Surface Soil	MRSNEKLRIPVPVIPTPLKLRPAARRQHLLEMMRARLPERAAP
Ga0209167_106154623	3300027867	Surface Soil	MKMSDKTRIPTPVVPTPLKLRPAARRQFLLEMMRSRVPPH
Ga0302228_101016223	3300028808	Palsa	MNANDKVRIPAPVIPTPLKLRPAARRQHLLEMMRARVPGAPALPKK
Ga0222749_107786921	3300029636	Soil	MSANKASIPIPVIPTPLKLRPAARRQHLLEMMRSRVRDRAPPKA
Ga0222749_108108071	3300029636	Soil	MNVNDKTRIPTPVVPTPLKLRPAARRQFLLEMMRA
Ga0302302_12215803	3300029997	Palsa	MNANDKVRIPAPVIPTPLKLRPAARRQHLLEMMRARVPGAP
Ga0075372_108321582	3300030853	Soil	MNVNDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRARAPPKAS
Ga0170822_136635311	3300031122	Forest Soil	MNVNDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRDRAPPKAS
Ga0318516_104032261	3300031543	Soil	MKDLAMKDKASRIPVPVIPTPLKLRPAARRQHLLEMMRARVSLDH
Ga0318541_100405584	3300031545	Soil	MKDLAMTDHKARVPVPVIPTPLKLRPAARRQHLLEMMRAR
Ga0318541_100753254	3300031545	Soil	MKDLAMKHNKARVPVAVIPIPLKLRPAARLVVLHC
Ga0318571_101043983	3300031549	Soil	MKDLAMKEKAARIPVPVIPTPLKLRPAARRQHLLDMMRARVP
Ga0318571_101695441	3300031549	Soil	MKDLAMKHNKARVPVAVIPIPLKLRPAARRQHLLEMMRARVPLDRAPPKNS
Ga0318528_100181944	3300031561	Soil	MKDLVMKDKLRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRT
Ga0318573_103114293	3300031564	Soil	MKDVAMKDKARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKNS
Ga0318542_101913631	3300031668	Soil	MKDLAMKDNKARVPVAVIPIPLKLRPAARRQHLLEMMRARVPLDRAPPKNS
Ga0318542_103640393	3300031668	Soil	MKDLVMKDKLRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0318561_103373223	3300031679	Soil	MKDVAMKEKAHVPVPVIPTPLKLRPAARRMHLLEMMRARVPLDRAPPKTS
Ga0318560_101849072	3300031682	Soil	MKDLVMKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0307474_111506871	3300031718	Hardwood Forest Soil	MSVNEKARIPVPVVPTPLKLRPAARRQHLLELMRA
Ga0306917_100516531	3300031719	Soil	MKELVMKDKPRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDR
Ga0318493_100430794	3300031723	Soil	MKELVMKDKPRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0318501_104563821	3300031736	Soil	MKDLAMTDHKARVPVPVIPTPLKLRPAARRQHLLEMMR
Ga0318554_106902572	3300031765	Soil	MKDKAARIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDR
Ga0318521_100691314	3300031770	Soil	MKDLVMKDKLRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAP
Ga0318508_11655311	3300031780	Soil	MKDLAMKDNKARVPVAVIPIPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0318552_102282243	3300031782	Soil	MKDLAMKDNNQARVPVAVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPK
Ga0318497_102613363	3300031805	Soil	MKDVAMKDKARIPVPVIPTPLKLRPAARRQHLLDMM
Ga0307473_113547802	3300031820	Hardwood Forest Soil	MKDNVKVRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0318512_106059432	3300031846	Soil	MKDVAMKDKARIPVPVIPTPLKLRPAARRQHLLDMMRALS
Ga0318527_102625173	3300031859	Soil	MKDLVMKDKLRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDR
Ga0318527_104264782	3300031859	Soil	MKDVAMKEKAHVPVPVIPTPLKLRPAARRMHLLEMMRARVPLDRAPPKT
Ga0306925_102105654	3300031890	Soil	MKDLAMTDHKARVPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0318520_105515051	3300031897	Soil	MKDLAMTDHKARVPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKT
Ga0318520_109847491	3300031897	Soil	MKELVMKDKPRIPVPVIPTPLKLRPAARRQHLLEMMRARV
Ga0310916_106904931	3300031942	Soil	MKDLAMKDNNQARVPVAVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKTS
Ga0310909_104092842	3300031947	Soil	HPRDAVRLAMKDLVMKDKPRIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0307479_121696111	3300031962	Hardwood Forest Soil	MSAANSKASIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPK
Ga0318562_105052071	3300032008	Soil	MKDLAMKDNNQARVPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAP
Ga0310911_105980761	3300032035	Soil	MKDVAMTEKARIPVPVIPTPLKLRPAARRQHLLDMMRARVPLDRAPPKNS
Ga0318514_100193003	3300032066	Soil	PVPVIPTPLKLRPAARRQHLLEMMRARVPLDRAPPKTS
Ga0318553_102715803	3300032068	Soil	MKDAAMKDKAYIPVPVIPTPLKLRPAARRQHLLEMMRARVPLDRVPPKTS
Ga0306924_103345701	3300032076	Soil	MKELVMKDKPRIPVPVIPTPLKLRPAARRQHLLEMMRA
Ga0335078_118311191	3300032805	Soil	MSMNDKVRIPTPVIPTPLKLRPAARRQHLLEMMRARLPSGRDLPKKS
Ga0335070_101766941	3300032829	Soil	MNANDKTRIPTPVVPTPLKLRPAARRQFLLEMMRARVPRGRAPPKAS
Ga0335071_121490541	3300032897	Soil	MKDKARIPVPVIPTPLKLRPAARRQHLLEMMRARV
Ga0335072_110735313	3300032898	Soil	MNANEKTRIPTPVVATPLKLRPAARRQFLLEMMRARVP
Ga0335084_116758351	3300033004	Soil	MNANDKVRIPTPVIATPLKLRPAARRQHLLEMMRARVP
Ga0335077_113570943	3300033158	Soil	MSVNEKTRIPVPVIPTPLKLRPAARRQHLLEMMRARVPGGDRAPPK
Ga0318519_100756911	3300033290	Soil	MKDLAMKEKAARIPVPVIPTPLKLRPAARRQHLLDMMRARV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071576

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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