Metagenome / Metatranscriptome Family F071586

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071586
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	49 residues
Representative Sequence	MKTFYLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRARFGISILGN
Number of Associated Samples	97
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.21 %
% of genes near scaffold ends (potentially truncated)	39.34 %
% of genes from short scaffolds (< 2000 bps)	81.15 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.311 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (18.852 % of family members)
Environment Ontology (ENVO)	Unclassified (31.967 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.262 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.25% β-sheet: 0.00% Coil/Unstructured: 46.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01618	MotA_ExbB	27.05
PF02472	ExbD	10.66
PF13432	TPR_16	3.28
PF13414	TPR_11	1.64
PF14559	TPR_19	1.64
PF12831	FAD_oxidored	0.82
PF13525	YfiO	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	10.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.31 %
Unclassified	root	N/A	28.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.31 %
Unclassified	root	N/A	28.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.31 %
Unclassified	root	N/A	28.69 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.52 %
Unclassified	root	N/A	28.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.66 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	37.70 %
Unclassified	root	N/A	28.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.70 %
Unclassified	root	N/A	28.69 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	5.74 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.70 %
Unclassified	root	N/A	28.69 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	5.74 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.70 %
Unclassified	root	N/A	28.69 %
Lysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter	5.74 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.70 %
Unclassified	root	N/A	28.69 %
Lysobacter daejeonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	5.74 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_104695020	Not Available	576	Open in IMG/M
3300000955\|JGI1027J12803_108817043	Not Available	936	Open in IMG/M
3300004114\|Ga0062593_100476013	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300004268\|Ga0066398_10058943	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300004479\|Ga0062595_101342924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300004798\|Ga0058859_11490322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1124	Open in IMG/M
3300004801\|Ga0058860_11975947	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300004803\|Ga0058862_12549182	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005093\|Ga0062594_101971523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300005166\|Ga0066674_10360751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300005180\|Ga0066685_10246715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1231	Open in IMG/M
3300005329\|Ga0070683_100075264	All Organisms → cellular organisms → Bacteria → Proteobacteria	3154	Open in IMG/M
3300005332\|Ga0066388_100207352	All Organisms → cellular organisms → Bacteria → Proteobacteria	2584	Open in IMG/M
3300005332\|Ga0066388_100584065	Not Available	1742	Open in IMG/M
3300005332\|Ga0066388_101350572	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300005332\|Ga0066388_105046902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300005340\|Ga0070689_100854292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300005354\|Ga0070675_101436816	Not Available	636	Open in IMG/M
3300005355\|Ga0070671_100070741	All Organisms → cellular organisms → Bacteria → Proteobacteria	2911	Open in IMG/M
3300005436\|Ga0070713_100187803	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300005438\|Ga0070701_11051987	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300005466\|Ga0070685_11590780	Not Available	505	Open in IMG/M
3300005564\|Ga0070664_100903482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300005598\|Ga0066706_10743190	Not Available	778	Open in IMG/M
3300005713\|Ga0066905_102320285	Not Available	502	Open in IMG/M
3300005719\|Ga0068861_100279863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1436	Open in IMG/M
3300005764\|Ga0066903_100327684	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300005764\|Ga0066903_102779289	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300005764\|Ga0066903_104016636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300006028\|Ga0070717_10088880	All Organisms → cellular organisms → Bacteria → Proteobacteria	2605	Open in IMG/M
3300006028\|Ga0070717_10346491	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300006034\|Ga0066656_11104088	Not Available	510	Open in IMG/M
3300006173\|Ga0070716_100026834	All Organisms → cellular organisms → Bacteria	3087	Open in IMG/M
3300006237\|Ga0097621_100724915	Not Available	917	Open in IMG/M
3300006796\|Ga0066665_10951313	Not Available	662	Open in IMG/M
3300006871\|Ga0075434_100121879	All Organisms → cellular organisms → Bacteria	2623	Open in IMG/M
3300006903\|Ga0075426_10392828	Not Available	1023	Open in IMG/M
3300009038\|Ga0099829_10048425	All Organisms → cellular organisms → Bacteria	3137	Open in IMG/M
3300009088\|Ga0099830_10040948	All Organisms → cellular organisms → Bacteria	3210	Open in IMG/M
3300009090\|Ga0099827_10684322	Not Available	886	Open in IMG/M
3300009098\|Ga0105245_12596718	Not Available	560	Open in IMG/M
3300009148\|Ga0105243_10592507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1066	Open in IMG/M
3300009792\|Ga0126374_10471177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300009792\|Ga0126374_10977094	Not Available	662	Open in IMG/M
3300009792\|Ga0126374_11432296	Not Available	564	Open in IMG/M
3300010043\|Ga0126380_10166375	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300010046\|Ga0126384_10238043	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300010047\|Ga0126382_12350276	Not Available	516	Open in IMG/M
3300010048\|Ga0126373_10945983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300010048\|Ga0126373_12890271	Not Available	536	Open in IMG/M
3300010359\|Ga0126376_12305396	Not Available	584	Open in IMG/M
3300010360\|Ga0126372_10349300	Not Available	1326	Open in IMG/M
3300010360\|Ga0126372_12083698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300010360\|Ga0126372_12451033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300010361\|Ga0126378_10143348	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300010361\|Ga0126378_10312601	Not Available	1676	Open in IMG/M
3300010366\|Ga0126379_10915775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	979	Open in IMG/M
3300010366\|Ga0126379_12202333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300010373\|Ga0134128_10091150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	3469	Open in IMG/M
3300010373\|Ga0134128_10108005	All Organisms → cellular organisms → Bacteria	3161	Open in IMG/M
3300010376\|Ga0126381_100424826	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300010398\|Ga0126383_11365983	Not Available	798	Open in IMG/M
3300012096\|Ga0137389_10005559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	8086	Open in IMG/M
3300012207\|Ga0137381_10457047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1114	Open in IMG/M
3300012207\|Ga0137381_11119904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300012285\|Ga0137370_10047330	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300012350\|Ga0137372_10408153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1027	Open in IMG/M
3300012350\|Ga0137372_10876060	Not Available	639	Open in IMG/M
3300012353\|Ga0137367_10123651	All Organisms → cellular organisms → Bacteria	1898	Open in IMG/M
3300012353\|Ga0137367_10399231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300012354\|Ga0137366_10788615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300012359\|Ga0137385_10884321	Not Available	740	Open in IMG/M
3300012929\|Ga0137404_10667758	Not Available	938	Open in IMG/M
3300012960\|Ga0164301_10517580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300012971\|Ga0126369_11009797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300012971\|Ga0126369_11127629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300012971\|Ga0126369_11543248	Not Available	754	Open in IMG/M
3300012972\|Ga0134077_10344460	Not Available	634	Open in IMG/M
3300013307\|Ga0157372_10566084	Not Available	1325	Open in IMG/M
3300014968\|Ga0157379_11651988	Not Available	627	Open in IMG/M
3300015371\|Ga0132258_10545996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	2904	Open in IMG/M
3300016341\|Ga0182035_10884073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300018431\|Ga0066655_10176368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1298	Open in IMG/M
3300020078\|Ga0206352_11064970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300021560\|Ga0126371_10036433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	4641	Open in IMG/M
3300021560\|Ga0126371_10383894	Not Available	1544	Open in IMG/M
3300025315\|Ga0207697_10507806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300025321\|Ga0207656_10266423	Not Available	842	Open in IMG/M
3300025900\|Ga0207710_10235162	Not Available	913	Open in IMG/M
3300025904\|Ga0207647_10006916	All Organisms → cellular organisms → Bacteria → Proteobacteria	8223	Open in IMG/M
3300025914\|Ga0207671_10311611	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300025922\|Ga0207646_10182338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	1896	Open in IMG/M
3300025932\|Ga0207690_10698821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300025936\|Ga0207670_10468084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300025944\|Ga0207661_10370182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300025960\|Ga0207651_10582747	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300025961\|Ga0207712_10270469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1382	Open in IMG/M
3300026023\|Ga0207677_10119684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	1978	Open in IMG/M
3300026142\|Ga0207698_11912470	Not Available	608	Open in IMG/M
3300026142\|Ga0207698_12389668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300026329\|Ga0209375_1206890	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300026377\|Ga0257171_1037377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	833	Open in IMG/M
3300026497\|Ga0257164_1027832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300026538\|Ga0209056_10401814	Not Available	841	Open in IMG/M
3300027654\|Ga0209799_1003784	All Organisms → cellular organisms → Bacteria	3076	Open in IMG/M
3300028379\|Ga0268266_10120240	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300030967\|Ga0075399_10010482	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300030969\|Ga0075394_10026000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300030973\|Ga0075395_10044831	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300031122\|Ga0170822_12630042	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300031231\|Ga0170824_119447221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300031231\|Ga0170824_121408487	Not Available	521	Open in IMG/M
3300031231\|Ga0170824_127828181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300031446\|Ga0170820_10244883	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300031474\|Ga0170818_115654778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300031573\|Ga0310915_10986681	Not Available	588	Open in IMG/M
3300031716\|Ga0310813_10016777	All Organisms → cellular organisms → Bacteria → Proteobacteria	4907	Open in IMG/M
3300031845\|Ga0318511_10253505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	790	Open in IMG/M
3300031890\|Ga0306925_11865152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300031947\|Ga0310909_10496614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300033475\|Ga0310811_10000796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	40372	Open in IMG/M
3300033475\|Ga0310811_10242171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → Lysobacter daejeonensis	2146	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.87%
Host-Associated	Host-Associated	22.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.87%
Plants	Host-Associated → Plants	19.67%
Human	Host-Associated → Human	2.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.56%
Digestive System	Host-Associated → Human → Digestive System	2.46%
Roots	Host-Associated → Plants → Roots	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.66%
Loam	Environmental → Terrestrial → Soil → Loam	17.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.92%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.46%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.46%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.46%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.46%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030973	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1046950201	3300000955	Soil	LIGVALAETEAAQGQTEDAQAQTEVDLRPRRARFGISILGT*
JGI1027J12803_1088170431	3300000955	Soil	MKKTFYLSVVIGVASAETEAAQGQTEDAQAQTQVDLRPRRVRFG
Ga0062593_1004760132	3300004114	Soil	MKTFHLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRAQFGISILSA*
Ga0066398_100589431	3300004268	Tropical Forest Soil	MKTCYLSVVIGVVLAEMEAAQGQTEEAQAGSEVDLRPRRARFGISILGN*
Ga0062595_1013429242	3300004479	Soil	MKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN*
Ga0058859_114903221	3300004798	Host-Associated	VLRLRGNTDMKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0058860_119759471	3300004801	Host-Associated	LSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0058862_125491821	3300004803	Host-Associated	LSVVIGEVLAEMEAAQGQTEEAQAQTEVDRRPRGARFGISILGN*
Ga0062594_1019715233	3300005093	Soil	MKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0066674_103607511	3300005166	Soil	TFHLSVVIGMALAEMEAAQGQTGDARVQEVDLHPRRARFGISTLGN*
Ga0066685_102467152	3300005180	Soil	MKKTFQMSVVIGVVLATMEAAQGQTEDAQAKTEIKLRLRRARFGISALDI*
Ga0070683_1000752645	3300005329	Corn Rhizosphere	MKTFYLSVVIGEVLAEMEAAQGQTEEAQAQTEVDRRPRGARFGISILGN*
Ga0066388_1002073522	3300005332	Tropical Forest Soil	MKKTFHLSVVIGVALAEMKAAQGQTEDAHAQEVDLRPRRARFGISTLGN*
Ga0066388_1005840652	3300005332	Tropical Forest Soil	MKKTFHLSVVIGVALAEMKAAQGQTDNAQAQEVDLRPRRARFGISTLGN*
Ga0066388_1013505722	3300005332	Tropical Forest Soil	MKKTFHLSVVIGVALAEMEAAQGQTEEAQAQEVDLRPRRARFGISILGI*
Ga0066388_1050469022	3300005332	Tropical Forest Soil	MKKTFHLSVVIGVVLAEMEAAQGQTEDAQAQEVDLRPRGSVSPS*
Ga0070689_1008542921	3300005340	Switchgrass Rhizosphere	KTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0070675_1014368162	3300005354	Miscanthus Rhizosphere	MKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGIPILGT*
Ga0070671_1000707411	3300005355	Switchgrass Rhizosphere	MKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0070713_1001878033	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKTFYLSVVIGVVLAEIEAAQGQTEEAQARTEVDLCPRRARFGISILGN*
Ga0070701_110519873	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	SVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0070685_115907802	3300005466	Switchgrass Rhizosphere	MKTFHLSVVISVVLAEMEAAQGQTEEAHAQTEVDLRPRRAQFGISI
Ga0070664_1009034823	3300005564	Corn Rhizosphere	LSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGIPILGT*
Ga0066706_107431901	3300005598	Soil	MKETFQMSIVIGAVVATMEAAQGQTEDAQAKTEIKLRLRRARFGISALDI*
Ga0066905_1023202851	3300005713	Tropical Forest Soil	MKTFYLSVVIGVVLAEMEAAQGQTEEAQAQSEVDLRPRRARFGISILGN*
Ga0068861_1002798631	3300005719	Switchgrass Rhizosphere	TDMKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT*
Ga0066903_1003276842	3300005764	Tropical Forest Soil	MKKTFHMSVVIGVVVAETEAAQGQTEQAQVSTEVDFGFRRARFGSSSLAN*
Ga0066903_1027792893	3300005764	Tropical Forest Soil	IVIGVVLAETEAAQGQTEDAQAPREVDLRTRRARFAISILSN*
Ga0066903_1040166361	3300005764	Tropical Forest Soil	MKKTFHLSVVIGMTLAETEAAQEQTKEAQAGMEVDSFRRRAWFGISIMGI*
Ga0070717_100888804	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKTFYLSVVIGVVLAEIEAAQGQTEEAQAQMEVDLRPRRARFGISILGN*
Ga0070717_103464914	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GNTEMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISIVGN*
Ga0066656_111040883	3300006034	Soil	MMKKTFHLSVVIGMALAEMEAAQGQTGDARVQEVDLHPRRARFGISTLGN*
Ga0070716_1000268341	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TEMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN*
Ga0097621_1007249151	3300006237	Miscanthus Rhizosphere	MKKTFHLSVVIGVALAGMKAAQGQTEDAHAQKADLRPRRARFGISMLGN*
Ga0066665_109513131	3300006796	Soil	MSIVIGAVVATMEAAQGQTEDAQAKTGVDLRLRRAWFGIPALDA*
Ga0075434_1001218795	3300006871	Populus Rhizosphere	MKKTFHLSVVMGAVLAEMEAAQGQTEDAHAHEVDLRPRRARFAISILSN*
Ga0075426_103928282	3300006903	Populus Rhizosphere	MKKTFHLSVVMGAVLAEMEAAQGQTEDAHAQEVDLRPRRARFAISILSN*
Ga0099829_100484251	3300009038	Vadose Zone Soil	MKKNFYWSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN*
Ga0099830_100409482	3300009088	Vadose Zone Soil	MKKNFYWSVVIGVVLAEIEAARGQTEEAQAQTEVDLRPRRARFGISILGN*
Ga0099827_106843221	3300009090	Vadose Zone Soil	MKTFYLSVVIGVVLAEIEAAQGQIEEAQAQTEVDLRPRRARFGISILGN*
Ga0105245_125967181	3300009098	Miscanthus Rhizosphere	MKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARVGISILGT
Ga0105243_105925073	3300009148	Miscanthus Rhizosphere	MKTFCLSVAIGKVLAETDAAQGQTEEAQAQTEVDLRPRRAQFGISILSA*
Ga0126374_104711772	3300009792	Tropical Forest Soil	MKIFHLPIVIGVVLAETEAAQGQTEDAHAQEVDLRPRRARFAISILSN*
Ga0126374_109770942	3300009792	Tropical Forest Soil	MRKTFHLSVVIGLVVAETEAAQGQTELAQASTEVDFRFRRARFGSSSLAY*
Ga0126374_114322961	3300009792	Tropical Forest Soil	MKKTFPLSVVIGVVLAKTEAAQEQTKNAQAQTELNLRLRRARFGVSILDT*
Ga0126380_101663753	3300010043	Tropical Forest Soil	MKTFYLSVVIGVVLAEMEAAQGQTEEAQAGSEVDLRPRRARFGISILGN*
Ga0126384_102380433	3300010046	Tropical Forest Soil	FHLSVVIGLVVAETEAAQGQTEQAQTSTKVDFRFRRARFGSSSLAN*
Ga0126382_123502761	3300010047	Tropical Forest Soil	MKKPFHLSVVIGLVVAETEAAQGQTELAQAPTEVDFRFRRARFGSSSLAY*
Ga0126373_109459832	3300010048	Tropical Forest Soil	MKKTFHLSVVIGMALAETEAAQEQTKEAQAGMEVDSLRRRAWFSISIMGI*
Ga0126373_128902711	3300010048	Tropical Forest Soil	MKKTLHLSVVIAVVLAETEAAQGQTEEAQAQTEVDPRSRRARFGISIVGN*
Ga0126376_123053961	3300010359	Tropical Forest Soil	MAMKRTFRLSVVIGVVLAETEAAQGQAEDAQAQTEVDLRPRRPRFGVSILGN*
Ga0126372_103493001	3300010360	Tropical Forest Soil	MKNRFHLSVVIGVVLAETVAAQGLAEEAQAQTEVDLRPRRARFGISIPGN*
Ga0126372_120836981	3300010360	Tropical Forest Soil	MKKTFHLSVVIGMALAEMKAAQGQTEDAQAQEVDLRPRRARFGISTLGN*
Ga0126372_124510332	3300010360	Tropical Forest Soil	IVIGVVLAETEAAQEQTEDPQAPREVDLRTRRARFAISILSN*
Ga0126378_101433483	3300010361	Tropical Forest Soil	MKKTFHLSVVIGMTLAETEAAQEQTKEAQAGMEVDSLRRRAWFSISIMGI*
Ga0126378_103126012	3300010361	Tropical Forest Soil	MKKHLHLSIVIGVTVAETEAAQGQDEQAQVSTEVEFRFRRARFGSSSLAI*
Ga0126379_109157752	3300010366	Tropical Forest Soil	MKNRFHLSVVIGVVLAETVAAQGQTEEAQAQTEVDLRPRRVRFGISIPGN*
Ga0126379_122023332	3300010366	Tropical Forest Soil	KKTLHLSVVIAVVLAETEAVQGQTEEALAGTEVDPRPRRARFGIFIVGN*
Ga0134128_100911504	3300010373	Terrestrial Soil	MKTFHLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRAQFGISILSD*
Ga0134128_101080054	3300010373	Terrestrial Soil	MKTFYLSVVIGEVLAEMEAAQGQTEEAQAQTEVDRRPRRARFGISILGN*
Ga0126381_1004248262	3300010376	Tropical Forest Soil	MKKHLHLSIVIGVTVAETEAAQGQDEQAQASTEVEFRFRRARFGSSSLAI*
Ga0126383_113659831	3300010398	Tropical Forest Soil	MKTFYLSIVIGVLLVEMEAAQGQTEEAQAQTEVDLRPRRARFGISALGN*
Ga0137389_100055592	3300012096	Vadose Zone Soil	MKTFYLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRARFGISILGN*
Ga0137381_104570471	3300012207	Vadose Zone Soil	MKKTFQMSVVIGVVLATMEAAQGQTEDAQAKTEIKPRLRRARFGISALDI*
Ga0137381_111199042	3300012207	Vadose Zone Soil	MKTFYLSVAIGVVLAEIEAAQGLTEEAQAQAEVDLRPRGVRFGISILGN*
Ga0137370_100473301	3300012285	Vadose Zone Soil	MKKNFYWSVVIGVVLAEIEAALGQTEEAQAQTEVDLRLRRARFGISILGN*
Ga0137372_104081532	3300012350	Vadose Zone Soil	MKKIFQMSVVIGVVLATMEAAQGQTEDAQAKTEIKLRLRRARFGISALDI*
Ga0137372_108760602	3300012350	Vadose Zone Soil	MKKTFHMSIVIGVVLANTEGEQGQTEDAQAKTKIKPCLGRARFGISALDI*
Ga0137367_101236513	3300012353	Vadose Zone Soil	MKKTFHMSIVIGVVLANTEGEQGQTEDAQAKTKIKLCLGRARFGISALDI*
Ga0137367_103992311	3300012353	Vadose Zone Soil	MKKTLQMSVVTGVVLATMEAAQGQTEDAQAKTEVDLRLRRARSGISGLDI*
Ga0137366_107886152	3300012354	Vadose Zone Soil	MKKTFQMSVVIGLVLATMEAAQGQTEDAQAKTEIKLRLRRARFGISALDI*
Ga0137385_108843211	3300012359	Vadose Zone Soil	MKTFYLSVAIGVVLAEIEAAQGLTEEAQGEEEVDLRPRRARFGISILGN*
Ga0137404_106677581	3300012929	Vadose Zone Soil	MKKTFQMSVVIGVVLATMEAAQGQTEDAQAKTEIKLRLRRARFGIS
Ga0164301_105175802	3300012960	Soil	MKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRSARFGISILGN*
Ga0126369_110097972	3300012971	Tropical Forest Soil	MKIFHLPIVIGVVLAETEAAQGQTEDAQAPREVDLRTRRARFAISILSN*
Ga0126369_111276292	3300012971	Tropical Forest Soil	MKKTFHLSVVIGMTLAETEAAQEQTKEAQAGMEVDSFRRRAWFGISIMGL*
Ga0126369_115432481	3300012971	Tropical Forest Soil	MKETFHLSVVIGVVVAETEAAQGQTEPAQHRRKLTFASELRFGSSSLAN*
Ga0134077_103444601	3300012972	Grasslands Soil	MKKTFHLSVVIGVVVLETEAAQGQTEDAQAQTEIELRLRTARLGISVLGI*
Ga0157372_105660842	3300013307	Corn Rhizosphere	MKKTFHLSVVIGVALAETEAVQGQTEDAQAQTEVDLRAPTARFGISILGT*
Ga0157379_116519881	3300014968	Switchgrass Rhizosphere	MKTFCLSVAIGKVVAETDAAQGQTEEAQAQTEVDLRPRRAQFGISILSA*
Ga0132258_105459962	3300015371	Arabidopsis Rhizosphere	MKTFYLSVVMSVVLAEMETAQGQTKEAQAHTEVDLCPRRVRFGISILGK*
Ga0182035_108840733	3300016341	Soil	GNTEMKKTFHLSVVIGVVVAETEAAQGQTEPAQASTEVDFRFRRARFGSSSLAN
Ga0066655_101763681	3300018431	Grasslands Soil	MKKTFQMSVVIGVVLATMEAAQGQTEDAQAKTEIKLRLRRARFGISALDI
Ga0206352_110649701	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	PQKAAWETEMKTFYLSVVIGEVLAEMEAAQGQTEEAQAQTEVDRRPRGARFGISILGN
Ga0126371_100364334	3300021560	Tropical Forest Soil	MKKTFHMSVVIGVVVAETEAAQGQTEQAQVSTEVDFGFRRARFGSSSLAN
Ga0126371_103838943	3300021560	Tropical Forest Soil	MKKTFHLSVVIGVVVAETEAAQGQTEPAQASTEVDFRFRRARFGSSSLAN
Ga0207697_105078063	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	TDMKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT
Ga0207656_102664232	3300025321	Corn Rhizosphere	MKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFG
Ga0207710_102351622	3300025900	Switchgrass Rhizosphere	MKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRPRRAQFGISILSD
Ga0207647_100069167	3300025904	Corn Rhizosphere	MKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT
Ga0207671_103116113	3300025914	Corn Rhizosphere	WKTEMKTFHLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRAQFGISILSA
Ga0207646_101823381	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKKNFYWSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGI
Ga0207690_106988211	3300025932	Corn Rhizosphere	AVLRLRGNTDMKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT
Ga0207670_104680841	3300025936	Switchgrass Rhizosphere	RLRGNTDMKKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT
Ga0207661_103701822	3300025944	Corn Rhizosphere	MKTFYLSVVIGEVLAEMEAAQGQTEEAQAQTEVDLRPRRAQFGISILSA
Ga0207651_105827472	3300025960	Switchgrass Rhizosphere	MKKTFHLSVVIGVSLAETEAAQGQTEEAQAQTEVDLRPRRAQFGISILSA
Ga0207712_102704694	3300025961	Switchgrass Rhizosphere	MKTFHLSVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT
Ga0207677_101196841	3300026023	Miscanthus Rhizosphere	MKTFHLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRAQ
Ga0207698_119124701	3300026142	Corn Rhizosphere	MKTFHLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRAQFG
Ga0207698_123896681	3300026142	Corn Rhizosphere	SVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRAQFGISILSA
Ga0209375_12068901	3300026329	Soil	NTEMKKTFQMSVVIGVVLATMEAAQGQTEDAQAKTEIKLRLRRARFGISALDI
Ga0257171_10373771	3300026377	Soil	MKTFYLSVVIGVVLAEMEAAQGQTEEAQAQTEVDLRPRRARFGISILGN
Ga0257164_10278321	3300026497	Soil	MKKTFHLSVVIGVVLAETEAAQGQTEEAQAQTEIDLRPRRARFGISFLGN
Ga0209056_104018141	3300026538	Soil	MKETFQMSIVIGAVVATMEAAQGQTEDAQAKTGVDLRLRRAWFGIPALDA
Ga0209799_10037841	3300027654	Tropical Forest Soil	MKTCYLSVVIGVVLAEMEAAQGQTEEAQAGSEVDLRPRRARFGISILGN
Ga0268266_101202403	3300028379	Switchgrass Rhizosphere	MKKTFHLYVVIGVALAETEAAQGQTEDAQAQTEVDLRSRTARFGISILGT
Ga0075399_100104821	3300030967	Soil	NTEMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN
Ga0075394_100260001	3300030969	Soil	KTFHLSVVIGVVLAEMEAAQGQTEDAHAQEVDLGPRRARFGISNLGI
Ga0075395_100448315	3300030973	Soil	VVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN
Ga0170822_126300421	3300031122	Forest Soil	QRGNTEMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISIVGN
Ga0170824_1194472211	3300031231	Forest Soil	RQRGNTEMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN
Ga0170824_1214084871	3300031231	Forest Soil	MKKNFHLSVVIGRVVGPTEAAQGQTEEAQAQTEVDLRPRRARFGI
Ga0170824_1278281811	3300031231	Forest Soil	EMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISIVGN
Ga0170820_102448834	3300031446	Forest Soil	LSVVIGVVLAEMEAAQGQTEDAHAQEVDLGPRRARFGISNLGI
Ga0170818_1156547781	3300031474	Forest Soil	QHYVEFETAVTRQRGNTEMKTFYLSVVIGVVLAEIEAAQGQTEEAQAQTEVDLRPRRARFGISILGN
Ga0310915_109866811	3300031573	Soil	MKKTFHLSFVIAVVLAEAEVAQGQTEDAQARTQVDPCPRTARFGISIVGN
Ga0310813_100167776	3300031716	Soil	MKKTLHLSVVIGVALAEMKAAQGQTEDAHAQKADLRPRRARFGISMLGN
Ga0318511_102535052	3300031845	Soil	TRLCGNTEMKKTFHLSFVIAVVLAEAEVAQGQTEDAQARTQVDPCPRTARFGISIVGN
Ga0306925_118651522	3300031890	Soil	IAVVLAEAEVAQGQTEDAQARTQVDPCPRTARFGISIVGN
Ga0310909_104966141	3300031947	Soil	GNTEMKKTFHLSFVIAVVLAEAEVAQGQTEDAQARTQVDPCPRTARFGISIVGN
Ga0310811_1000079633	3300033475	Soil	SLKLPYKRGNTEMKKTLHLSVVIGVALAEMKAAQGQTEDAHAQKADLRPRRARFGISMLG
Ga0310811_102421713	3300033475	Soil	MKTFYLSVVIGEVLAEMEAAQGQTEEAQAQTEVDRRPRGARFGISILG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071586

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences