Metagenome / Metatranscriptome Family F071646

Basic Information
Family ID	F071646
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	46 residues
Representative Sequence	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNCLDLENFI
Number of Associated Samples	52
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.21 %
% of genes near scaffold ends (potentially truncated)	58.20 %
% of genes from short scaffolds (< 2000 bps)	99.18 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Most Common Taxonomy
Group	Unclassified (98.361 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (22.951 % of family members)
Environment Ontology (ENVO)	Unclassified (95.082 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (72.951 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.05% β-sheet: 17.11% Coil/Unstructured: 61.84%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF12717	Cnd1	0.90

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.36 %
All Organisms	root	All Organisms	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.36 %
Viruses	superkingdom	All Organisms → Viruses	0.82 %
cellular organisms	root	All Organisms → cellular organisms	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.82 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001348\|JGI20154J14316_10059901	Not Available	1513	Open in IMG/M
3300001348\|JGI20154J14316_10074057	Not Available	1236	Open in IMG/M
3300001348\|JGI20154J14316_10125394	Not Available	748	Open in IMG/M
3300001348\|JGI20154J14316_10193569	Not Available	504	Open in IMG/M
3300001348\|JGI20154J14316_10194712	Not Available	501	Open in IMG/M
3300006164\|Ga0075441_10190534	Not Available	765	Open in IMG/M
3300006164\|Ga0075441_10236524	Not Available	674	Open in IMG/M
3300006164\|Ga0075441_10277463	Not Available	614	Open in IMG/M
3300006164\|Ga0075441_10277463	Not Available	614	Open in IMG/M
3300006164\|Ga0075441_10279706	Not Available	611	Open in IMG/M
3300006164\|Ga0075441_10307457	Not Available	578	Open in IMG/M
3300006164\|Ga0075441_10327690	Not Available	557	Open in IMG/M
3300006164\|Ga0075441_10331717	Not Available	553	Open in IMG/M
3300006164\|Ga0075441_10395728	Not Available	500	Open in IMG/M
3300006165\|Ga0075443_10376819	Not Available	529	Open in IMG/M
3300006165\|Ga0075443_10384374	Not Available	524	Open in IMG/M
3300006165\|Ga0075443_10385943	Not Available	523	Open in IMG/M
3300007957\|Ga0105742_1019220	Not Available	778	Open in IMG/M
3300009409\|Ga0114993_11206960	Not Available	532	Open in IMG/M
3300009420\|Ga0114994_10479246	Not Available	821	Open in IMG/M
3300009420\|Ga0114994_10870304	Not Available	584	Open in IMG/M
3300009432\|Ga0115005_11292056	Not Available	595	Open in IMG/M
3300009436\|Ga0115008_11509201	Not Available	520	Open in IMG/M
3300009436\|Ga0115008_11565783	Not Available	511	Open in IMG/M
3300009437\|Ga0115556_1335113	Not Available	532	Open in IMG/M
3300009440\|Ga0115561_1282350	Not Available	615	Open in IMG/M
3300009440\|Ga0115561_1327212	Not Available	564	Open in IMG/M
3300009440\|Ga0115561_1387638	Not Available	511	Open in IMG/M
3300009447\|Ga0115560_1334556	Not Available	574	Open in IMG/M
3300009447\|Ga0115560_1381215	Not Available	534	Open in IMG/M
3300009447\|Ga0115560_1382663	Not Available	533	Open in IMG/M
3300009447\|Ga0115560_1383779	Not Available	532	Open in IMG/M
3300009447\|Ga0115560_1383783	Not Available	532	Open in IMG/M
3300009447\|Ga0115560_1383784	Not Available	532	Open in IMG/M
3300009447\|Ga0115560_1383806	Not Available	532	Open in IMG/M
3300009447\|Ga0115560_1410221	Not Available	512	Open in IMG/M
3300009467\|Ga0115565_10480376	Not Available	558	Open in IMG/M
3300009495\|Ga0115571_1442726	Not Available	502	Open in IMG/M
3300009507\|Ga0115572_10500629	Not Available	674	Open in IMG/M
3300009507\|Ga0115572_10712783	Not Available	545	Open in IMG/M
3300009544\|Ga0115006_11837014	Not Available	555	Open in IMG/M
3300009705\|Ga0115000_10540692	Not Available	730	Open in IMG/M
3300009705\|Ga0115000_11033980	Not Available	500	Open in IMG/M
3300009706\|Ga0115002_10656735	Not Available	745	Open in IMG/M
3300019214\|Ga0180037_1200618	Not Available	531	Open in IMG/M
3300020165\|Ga0206125_10265407	Not Available	650	Open in IMG/M
3300020165\|Ga0206125_10290063	Not Available	614	Open in IMG/M
3300020165\|Ga0206125_10326503	Not Available	569	Open in IMG/M
3300020165\|Ga0206125_10334563	Not Available	560	Open in IMG/M
3300020165\|Ga0206125_10358254	Not Available	536	Open in IMG/M
3300020165\|Ga0206125_10363398	Not Available	531	Open in IMG/M
3300020175\|Ga0206124_10354305	Not Available	552	Open in IMG/M
3300020175\|Ga0206124_10375709	Not Available	532	Open in IMG/M
3300020175\|Ga0206124_10375709	Not Available	532	Open in IMG/M
3300020175\|Ga0206124_10385429	Not Available	523	Open in IMG/M
3300020182\|Ga0206129_10400942	Not Available	517	Open in IMG/M
3300020182\|Ga0206129_10400942	Not Available	517	Open in IMG/M
3300020187\|Ga0206130_10377091	Not Available	577	Open in IMG/M
3300020396\|Ga0211687_10361558	Not Available	564	Open in IMG/M
3300020595\|Ga0206126_10404602	Not Available	600	Open in IMG/M
3300021085\|Ga0206677_10232327	Not Available	772	Open in IMG/M
3300021085\|Ga0206677_10401987	Not Available	518	Open in IMG/M
3300021185\|Ga0206682_10186535	Not Available	954	Open in IMG/M
3300021185\|Ga0206682_10428111	Not Available	555	Open in IMG/M
3300021185\|Ga0206682_10428111	Not Available	555	Open in IMG/M
3300021185\|Ga0206682_10462655	Not Available	528	Open in IMG/M
3300021345\|Ga0206688_10970198	Not Available	566	Open in IMG/M
3300021365\|Ga0206123_10458369	Not Available	516	Open in IMG/M
3300021365\|Ga0206123_10458369	Not Available	516	Open in IMG/M
3300025830\|Ga0209832_1216195	Not Available	529	Open in IMG/M
3300025860\|Ga0209119_1262804	Not Available	632	Open in IMG/M
3300025874\|Ga0209533_1361835	Not Available	536	Open in IMG/M
3300025874\|Ga0209533_1361835	Not Available	536	Open in IMG/M
3300025874\|Ga0209533_1365892	Not Available	531	Open in IMG/M
3300025876\|Ga0209223_10463790	Not Available	524	Open in IMG/M
3300025876\|Ga0209223_10480842	Not Available	510	Open in IMG/M
3300025876\|Ga0209223_10487444	Not Available	505	Open in IMG/M
3300025880\|Ga0209534_10357611	Not Available	648	Open in IMG/M
3300027553\|Ga0208947_1147037	Not Available	508	Open in IMG/M
3300027582\|Ga0208971_1077911	Not Available	821	Open in IMG/M
3300027714\|Ga0209815_1053591	All Organisms → Viruses → Predicted Viral	1453	Open in IMG/M
3300027714\|Ga0209815_1130296	Not Available	816	Open in IMG/M
3300027714\|Ga0209815_1130296	Not Available	816	Open in IMG/M
3300027714\|Ga0209815_1232665	Not Available	560	Open in IMG/M
3300027771\|Ga0209279_10197807	Not Available	599	Open in IMG/M
3300027838\|Ga0209089_10650223	Not Available	548	Open in IMG/M
3300027838\|Ga0209089_10650223	Not Available	548	Open in IMG/M
3300028194\|Ga0257106_1221179	Not Available	643	Open in IMG/M
3300028198\|Ga0257121_1210612	Not Available	616	Open in IMG/M
3300031175\|Ga0308020_1128451	Not Available	730	Open in IMG/M
3300031589\|Ga0307996_1191356	Not Available	533	Open in IMG/M
3300031605\|Ga0302132_10365093	Not Available	657	Open in IMG/M
3300031612\|Ga0308009_10355705	Not Available	536	Open in IMG/M
3300031621\|Ga0302114_10391884	Not Available	521	Open in IMG/M
3300031621\|Ga0302114_10395371	Not Available	518	Open in IMG/M
3300031629\|Ga0307985_10240694	Not Available	710	Open in IMG/M
3300031629\|Ga0307985_10254693	Not Available	688	Open in IMG/M
3300031629\|Ga0307985_10419621	Not Available	515	Open in IMG/M
3300031660\|Ga0307994_1087250	Not Available	1142	Open in IMG/M
3300031660\|Ga0307994_1093041	Not Available	1092	Open in IMG/M
3300031660\|Ga0307994_1178349	Not Available	688	Open in IMG/M
3300031660\|Ga0307994_1185052	Not Available	670	Open in IMG/M
3300031660\|Ga0307994_1199827	Not Available	634	Open in IMG/M
3300031660\|Ga0307994_1229155	Not Available	574	Open in IMG/M
3300031660\|Ga0307994_1240915	Not Available	554	Open in IMG/M
3300031660\|Ga0307994_1255674	Not Available	531	Open in IMG/M
3300031660\|Ga0307994_1275257	Not Available	504	Open in IMG/M
3300031683\|Ga0308006_10172709	Not Available	670	Open in IMG/M
3300031687\|Ga0308008_1129431	Not Available	586	Open in IMG/M
3300031689\|Ga0308017_1118023	Not Available	540	Open in IMG/M
3300031689\|Ga0308017_1118023	Not Available	540	Open in IMG/M
3300031706\|Ga0307997_10028453	All Organisms → cellular organisms → Eukaryota	2457	Open in IMG/M
3300031706\|Ga0307997_10132573	Not Available	966	Open in IMG/M
3300031706\|Ga0307997_10139293	Not Available	936	Open in IMG/M
3300031706\|Ga0307997_10192501	Not Available	758	Open in IMG/M
3300031706\|Ga0307997_10317783	Not Available	547	Open in IMG/M
3300031706\|Ga0307997_10318572	Not Available	546	Open in IMG/M
3300031706\|Ga0307997_10318572	Not Available	546	Open in IMG/M
3300031706\|Ga0307997_10328809	Not Available	535	Open in IMG/M
3300031706\|Ga0307997_10332681	Not Available	531	Open in IMG/M
3300031851\|Ga0315320_10732010	Not Available	631	Open in IMG/M
3300031851\|Ga0315320_10732010	Not Available	631	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	37.70%
Pelagic	Environmental → Aquatic → Marine → Pelagic	27.05%
Oceanic	Environmental → Aquatic → Marine → Oceanic	13.93%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	10.66%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.02%
Inlet	Environmental → Aquatic → Marine → Inlet	0.82%
Coastal	Environmental → Aquatic → Marine → Coastal	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	37.70%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	27.05%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.93%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	10.66%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	8.20%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.82%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.82%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.82%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	22.95%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	14.75%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	13.93%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	13.11%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	12.30%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	10.66%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	6.56%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.64%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.82%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.82%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.82%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001348	Pelagic Microbial community sample from North Sea - COGITO 998_met_04	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300007957	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_3.0um	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009432	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300009437	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414	Environmental	Open in IMG/M
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental	Open in IMG/M
3300009447	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509	Environmental	Open in IMG/M
3300009467	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009544	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300019214	Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental	Open in IMG/M
3300020187	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1	Environmental	Open in IMG/M
3300020396	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300021345	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300025830	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)	Environmental	Open in IMG/M
3300025860	Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)	Environmental	Open in IMG/M
3300025874	Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)	Environmental	Open in IMG/M
3300025876	Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)	Environmental	Open in IMG/M
3300025880	Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)	Environmental	Open in IMG/M
3300027553	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)	Environmental	Open in IMG/M
3300027582	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes)	Environmental	Open in IMG/M
3300027714	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)	Environmental	Open in IMG/M
3300027771	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental	Open in IMG/M
3300028198	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100	Environmental	Open in IMG/M
3300031175	Marine microbial communities from water near the shore, Antarctic Ocean - #349	Environmental	Open in IMG/M
3300031589	Marine microbial communities from David Island wharf, Antarctic Ocean - #35	Environmental	Open in IMG/M
3300031605	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1	Environmental	Open in IMG/M
3300031612	Marine microbial communities from water near the shore, Antarctic Ocean - #127	Environmental	Open in IMG/M
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental	Open in IMG/M
3300031629	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80	Environmental	Open in IMG/M
3300031660	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261	Environmental	Open in IMG/M
3300031683	Marine microbial communities from water near the shore, Antarctic Ocean - #69	Environmental	Open in IMG/M
3300031687	Marine microbial communities from water near the shore, Antarctic Ocean - #125	Environmental	Open in IMG/M
3300031689	Marine microbial communities from water near the shore, Antarctic Ocean - #280	Environmental	Open in IMG/M
3300031706	Marine microbial communities from David Island wharf, Antarctic Ocean - #36	Environmental	Open in IMG/M
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20154J14316_100599011	3300001348	Pelagic Marine	MDVEWSAVVELEHPWYQGATLYTITSDAAQNSKSYQRYLNCLDLAK
JGI20154J14316_100740573	3300001348	Pelagic Marine	MDVECSKLVELEHPWYQGVTLYTISRDAEHNTKSCQRYLDCLDLAKFV*
JGI20154J14316_101253941	3300001348	Pelagic Marine	EVSMDMERSTVVELDHPWYQGVTLYTISRRAEHNSKSY*
JGI20154J14316_101935691	3300001348	Pelagic Marine	MDMEWSTVVELDHPWYHGVTLYTISRGAQHNSTSYQRYLDCLDLAKFV*
JGI20154J14316_101947122	3300001348	Pelagic Marine	MDVKRSTLVELEHPWYRGVKLYTISSSAEHNSKSYQRHLDGLDLAKFI*
Ga0075441_101905341	3300006164	Marine	MDVEWSTVVELEHPWYQGVKLYTISRDAEHNSESQQRYLNCRDLENFI*
Ga0075441_102365241	3300006164	Marine	MDVEWSTVVELEHPWYRGVKSYTISRGAEHNSESQQRYRNCLDLENFILKI*
Ga0075441_102774631	3300006164	Marine	VSMDVEWSTVVELEHPWYQGVKLYTISSGAEHNSESYQRYCNCRDLENFI*
Ga0075441_102774632	3300006164	Marine	MDVEWSTVAELEHPWYQGVKLYTISRGAKHNIESYQRYRNCLDLENFI*
Ga0075441_102797061	3300006164	Marine	MDVEWSTVVELDNPWYRGVKLYTISRGAEHNSESQQRYLNCRDLENFI*
Ga0075441_103074571	3300006164	Marine	VEWSKLVELEHAWYQGVKLYTISRGAEHNSESYQRYRNC
Ga0075441_103276901	3300006164	Marine	MDVEWSTVVESEHPWYRGVKLYTISRGEAHNNESQQRYLDCLDLENFI*
Ga0075441_103317171	3300006164	Marine	MDVAWSKVVELEHPWYRGVKLYTINRGAVHNNESQQRYLNCRDLEKFI*
Ga0075441_103957281	3300006164	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNCRD
Ga0075443_103768191	3300006165	Marine	MDVEWSTVVELEHPWYQGVKLYTISSGAAHNNESQQRYLNCRDLENFI*
Ga0075443_103843742	3300006165	Marine	MDVEWSTVVELEHPWYRGVKLYTISKGAEHNSESYQRYLNCRDMENFI*
Ga0075443_103859431	3300006165	Marine	MDVEWSTVAELEHPWYQGVKLYTISRGAKHNSESYQRYRNCLDLENFI*
Ga0105742_10192201	3300007957	Estuary Water	MDMERSTLVELDHPWYNGVTLYTISGRAQHNSKSYQRYLDCL
Ga0114993_112069601	3300009409	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAKHNSESYQRYLNC
Ga0114994_104792461	3300009420	Marine	PETIVKGRWEVSMDMERSTLGELEHPWYQGITLYTISRGAEHNTKSDQRYLDCLDLAKFV
Ga0114994_108703041	3300009420	Marine	MDMEWSTLVELDHPWYQGVTLYTISRRAEHNSKSYQRYLNCLDLAKF
Ga0115005_112920561	3300009432	Marine	MTLGGVSMDVEWSIVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNCRDLENFI*
Ga0115008_115092011	3300009436	Marine	MDVEWSTLVELDHPWYRGVMLYTISRDTEHNSGSY
Ga0115008_115657831	3300009436	Marine	MDVERSTLVKLDHPWYQGVTLYTTSSGAAHNSKSYQRYLDC
Ga0115556_13351131	3300009437	Pelagic Marine	MDMEWSKLVKLDHPWYQGVKLFTTSRGAEHNTKSY
Ga0115561_12823501	3300009440	Pelagic Marine	KLVELEHPWYQGVTLYTFTRGAAHSSKSYQRYLDCLDLAKFV*
Ga0115561_13272122	3300009440	Pelagic Marine	MDMEWFKLVELDHPWYQGVTLYTISRGAEHNSKSYQRYLDCLDLAKFV*
Ga0115561_13876381	3300009440	Pelagic Marine	MDVEWSKLVELDHPWYQGVTLYIISSGAADNSKSYQRYLDSLDLAKFI*
Ga0115560_13345561	3300009447	Pelagic Marine	MDMEWSKRVELEHQWYQGVTLYIISRGAAHNSESYQRYLDCLDL
Ga0115560_13812151	3300009447	Pelagic Marine	MDMEWSTVVELDHPWYHGVTLYTTNRGAAHNSKSYTNDISIV
Ga0115560_13826631	3300009447	Pelagic Marine	WCWKVSMDMEWSKLVELDHPWYQGVTLYTISSGAEHNSGSYQRYLNCLDLAKFI*
Ga0115560_13837791	3300009447	Pelagic Marine	DMKWSKLVELDHLWYQGVTLYTISSGAAHNSKSYQR*
Ga0115560_13837831	3300009447	Pelagic Marine	MDLQWSKLVELDHPWYPGVKLYTISRGAEHNSKSYQRYLDCL
Ga0115560_13837841	3300009447	Pelagic Marine	DMERSTVVELDHPWYQGVTLYTISRRAEHNSKSY*
Ga0115560_13838061	3300009447	Pelagic Marine	MDMEWSKLVELEHPWYQGVKLYTIGRGAEHNSESYQR*
Ga0115560_14102211	3300009447	Pelagic Marine	KLVELDHPWYQGVMLYTTSRGAEHNSKSYQRYLKCLDLAKFI*
Ga0115565_104803761	3300009467	Pelagic Marine	MDMEWSKLVELEHPWYRGVKLYTISSGAEHNSESYQRYLNGLDLAKFI*
Ga0115571_14427261	3300009495	Pelagic Marine	KTFPKNAPGTIVKGRWEVSMDMEWSTLVELEHPWYQGVTLYTISRGAEHNSKSYQRYLDCLDLAKFV*
Ga0115572_105006291	3300009507	Pelagic Marine	MDVEWSKLVELEHPWYQGVKLYTISRGADHNSKSYQRALDCLDLAKFI*
Ga0115572_107127831	3300009507	Pelagic Marine	MDVEWSKLVELDHPWYQGVTLYTISSGAADNSKSYQRYLDGLDLAKFI*
Ga0115006_118370141	3300009544	Marine	MDVEWSKLVELEHAWYQGVKLYTISRGAEHNSESYQRYRNCRDLENFI*
Ga0115000_105406921	3300009705	Marine	TIFPKNASGTVVKGRWEVSMDMKWSKRVELEHPWYQGVKLYTISSGAEHSSKSYQRYLDGLDLAKFI*
Ga0115000_110339802	3300009705	Marine	MDVEWSKLVKLEHPWYQGVKLYTISRGAEHNSESYQR
Ga0115002_106567351	3300009706	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNCRDLTNFVQETYEEEE*
Ga0180037_12006181	3300019214	Estuarine	MDVEWFKLVELNHPWYRGVKLFTISRRAEHNSKSYQRYLDGLDLAKFI
Ga0206125_102654071	3300020165	Seawater	WSKLVELDHPWYQGVTLYTISRRAAHNSESYQRYLDHLDLAKFI
Ga0206125_102900631	3300020165	Seawater	EVSMDVECSKLVELEHPWYQGVTLYTISRDAEHNTKSCQRYLHCLDLAKFV
Ga0206125_103265031	3300020165	Seawater	MDMEWSTAVELEHPWYQGVRLYTISRRAAHNSESYQ
Ga0206125_103345631	3300020165	Seawater	SMDVKRSTLVELEHPWYRGVKLYTISSSAEHNSKSYQRHLDGLDLAKFI
Ga0206125_103582541	3300020165	Seawater	MDMKRSTVVELDHPWYQGVTLYTITSGAAHNSESYQRYLDCLDL
Ga0206125_103633981	3300020165	Seawater	MDMKRSKLVELEHPWYQGVTLYTFTRGAAHSSKSYQRYLDCLDLASSF
Ga0206124_103543051	3300020175	Seawater	MDMERSTLVELDHPWYQGVTLYILSRGAEHNSESYERYL
Ga0206124_103757091	3300020175	Seawater	MDVECSKLVELEHPWYQGVTLYTISRDAEHNTKSCQR
Ga0206124_103757092	3300020175	Seawater	EVSMDLQWSKLVELDHPWYPGVKLYTISRGAAHNSKSYQRYLDCLDLAKFV
Ga0206124_103854291	3300020175	Seawater	MDVEWSTVLELDHPWYRGVTLYTISRRAEHNSKSYQRYLDGLDLAKFV
Ga0206129_104009421	3300020182	Seawater	KLLELEHPWYQGVRLYTISSGAEHNSKSYQRYLDGLDLAKFI
Ga0206129_104009422	3300020182	Seawater	MDVEWSKRVELEHPWYQGVRLYTISSGAEHNSKSYQRYLDG
Ga0206130_103770911	3300020187	Seawater	MDMEWSKLVKLDHPWYRGVKLFTTSRGAEHNTKSY
Ga0211687_103615581	3300020396	Marine	MDMERSTVVELDHPWYRGVTLYTISRGAEHNSKSYQRYLDCLDLAKFV
Ga0206126_104046021	3300020595	Seawater	KDVGEVSMDMEWSTLVELEHPWYQGVTLYTISRDAAHNSRSY
Ga0206677_102323271	3300021085	Seawater	MDMEWSKLVKLDHPWYRGVKLFTTSRGAEHNTKSYQRYLD
Ga0206677_104019871	3300021085	Seawater	MDVEWSKLVELEHPWYQGVRLYTIISGAEHNSKSYQRYLDGLDLAKFI
Ga0206682_101865351	3300021185	Seawater	MDMEWFKLVELDHPWYPGVTLYTISRGAEHNSKSYQRYLDCLDLAKFV
Ga0206682_104281111	3300021185	Seawater	SMDMEWSKRVELDHPWYQGVTLYTISRRAEHNSKSYQRYLDCLDLAKFV
Ga0206682_104281112	3300021185	Seawater	MDMEWFKRVELDHPWYQGVTLYTISRRAEHNSKSYQRYLDCLDLAKF
Ga0206682_104626551	3300021185	Seawater	MDVEWSKLVELEHPWYQGVKLYTISSSAAHNSKSYQRYLDGLDLAKFI
Ga0206688_109701981	3300021345	Seawater	YIILYRYMHTSDVGEVSMDMEWSTVVELEHPWYQGVTLYTINRRVEHNSTSYQRYLNCLDLAKFI
Ga0206123_104583691	3300021365	Seawater	ELDHPWYQGVTLYTISSGAADNSKSYQRYLDSLDLAKFI
Ga0206123_104583692	3300021365	Seawater	MDVEWSKLVELDHPWYQGVTLYTISSGAADNSKSYQRYLDGLDL
Ga0209832_12161951	3300025830	Pelagic Marine	MDVEWSKLVELEHPWYQGVRLYIISRRAEHNSKLYQRYLDGLDLAKFI
Ga0209119_12628041	3300025860	Pelagic Marine	MDMEWSKLVKLDHPWYQGVKLFTTSRGAEHNTKSYQRYLDCLDLAKFV
Ga0209533_13618351	3300025874	Pelagic Marine	MDMEWSKLVKLDHPWYQGVKLFTTSRGAEHNTKSYQRY
Ga0209533_13618352	3300025874	Pelagic Marine	EVSMDMEWSKLVKLDHPWYQGVKLFTTSRGAEHNTKSYQRYLDCLDLAKFV
Ga0209533_13658921	3300025874	Pelagic Marine	CPDQKTFPKNAPGTIVKGRWEVSMDMEWSKLVELEHPWYQGVTLYTISRGAEHNSKSYQRYLDCLDLAKFV
Ga0209223_104637901	3300025876	Pelagic Marine	LVSSPDQKIFPKNAPGTIVKGRWEVSMDMEWSKLVELEHPWYQGVTLYTISRGAEHNSKSYQRYLDCLDLAKFV
Ga0209223_104808422	3300025876	Pelagic Marine	GVSMDMERSTAVELEHPWYQGVTLYTMNRGAAHNSESYQRYLNCLDLAKFI
Ga0209223_104874441	3300025876	Pelagic Marine	GTIVKRRWEVSMDVEWSKRVELEHPWYRGVKLYTISRGAEHNSKSQQRYLNCLDLAKFV
Ga0209534_103576111	3300025880	Pelagic Marine	MDVEWSTVLELDHPWYQGVTLYTISRRAEHNSKSYQRYLDGLDLAKFV
Ga0208947_11470371	3300027553	Marine	MDMEWSKLVELDHPWYQGVTLYTITSGAAHNSESYQRYLDCLDLAKFI
Ga0208971_10779112	3300027582	Marine	MDVEWSKLVELEHPWYQGVTLYTISSGAAHNSKSYQRYLDGLDLAKFI
Ga0209815_10535913	3300027714	Marine	VVELDNPWYRGVKLYTISRGAEHNSESQQRYLNCRDLENFI
Ga0209815_11302961	3300027714	Marine	MDVEWSTVVELEHPWYQGVKLYTVSSGAEHNSESQQR
Ga0209815_11302962	3300027714	Marine	MDVEWSTVVELEHPWYQGVKLYTVSSGAEHNSESYQRYLNCRDLENFV
Ga0209815_12326651	3300027714	Marine	MDVEWSKLVELEHAWYQGVKLYTISRGAEHNSESYQRYRNCLDLENFI
Ga0209279_101978072	3300027771	Marine	DVEWSTVVELEHPWYQGVKLYTVSRGAEHNSESQQRYLNCRDLENFV
Ga0209089_106502231	3300027838	Marine	NDVGGVSMDVEWSTVVELEHPWYQGVKLYTISRGAKHNSESYQRYLNCRDLENFI
Ga0209089_106502232	3300027838	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRY
Ga0257106_12211791	3300028194	Marine	MDVERSTLVELEHPWYRGVKLYTISSSAEHNSKSYQRHLDGLDLAKFI
Ga0257121_12106121	3300028198	Marine	MDMEWSKLVELEHPWYQGVRLYTIISGAAHKSKSYQRYLDCLDLAKFI
Ga0308020_11284512	3300031175	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESYQRYRNCRDLENFI
Ga0307996_11913561	3300031589	Marine	MDVEWSTVAELEHPWYQGVELYTISRGAEHNSESYQR
Ga0302132_103650931	3300031605	Marine	MDMEWSKLVKLDHPWYQGVKLFTTSRGAEHNTKSYQRYL
Ga0308009_103557051	3300031612	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESYQRYRN
Ga0302114_103918841	3300031621	Marine	MDVEWSKLVELEHPRYRGVTLYTISRRAEHNSKSYQRYLDCLDLAKFI
Ga0302114_103953711	3300031621	Marine	MDVEWSTLVELDHPWYQGVMLYTISRDTEHNSGSYQRYLNCLDVAKFI
Ga0307985_102406941	3300031629	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAKHNSESQ
Ga0307985_102546931	3300031629	Marine	MDVEWSKLVELEHPWYRGVKLYTISSGAEHNSESYQRYCNCRDLENFI
Ga0307985_104196211	3300031629	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYRKYLENFI
Ga0307994_10872502	3300031660	Marine	MDVEWSTLLELEHPWYRGVNLYTISRGAEHNSESQQRYLNCLDLENFI
Ga0307994_10930412	3300031660	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNCLDLENFI
Ga0307994_11783491	3300031660	Marine	MDVERSTVVELEHLWYQGVKLYTISRGAEHNSESYQRYRDCLDLENFI
Ga0307994_11850521	3300031660	Marine	MDVKWSTVVELEHPWYQGVKLYTISRGAEHNSESYYRYLNCLDLENFI
Ga0307994_11998271	3300031660	Marine	MDVERSTVVELEHPWYQGVKLYTTSRGAEHNSESQQRYRDCLDLENFI
Ga0307994_12291551	3300031660	Marine	MTLGGVSMDVEWPTVVELEHPWYQEVKLYTISRGAEHN
Ga0307994_12409151	3300031660	Marine	MDMEWSTVVELEHPWYQGVMLYTISSGAEHNSESQQR
Ga0307994_12556741	3300031660	Marine	MDVEWSTVVELEHPWYQGVKLYTISRSAEHNSESQQ
Ga0307994_12752571	3300031660	Marine	MDVKWSTVVELEHPWYQGVKLFTISRGAEHNSESYQRYLNCR
Ga0308006_101727091	3300031683	Marine	WGVSMDVEWSTVVELEHPWYQGVKLYTVSRGAEHNSESQQR
Ga0308008_11294311	3300031687	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYRKYLE
Ga0308017_11180231	3300031689	Marine	VGGVSMDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESYQRYRNCLDLENFI
Ga0308017_11180232	3300031689	Marine	MDVKWSTVVELEHPWYQGVKLYTISRGAKHNSESYQRYR
Ga0307997_100284534	3300031706	Marine	MDVAWSTVVELEHPWYRGVKLYTINRGAEHNSESQQRYLNCRDLANFI
Ga0307997_101325731	3300031706	Marine	MVVEWSTVVELEHPWYRGVRLYTISRGAEHNNESQQQQRYLNCHDLENFIQKTYEEEE
Ga0307997_101392931	3300031706	Marine	MVVEWSTVVELEHAWYQGVKLYTISRGAEHNSESQQRYRNCRDLEN
Ga0307997_101925011	3300031706	Marine	MDVEWSTVVGLEHPWYQGVKLYTISRGAEHNSESYQRYRNCRDLENFI
Ga0307997_103177831	3300031706	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGVAHNSESQQRYLNCR
Ga0307997_103185721	3300031706	Marine	MDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNC
Ga0307997_103185722	3300031706	Marine	WEVSMDVEWSTVVELEHPWYQGVKLYTISRGAEHNSESQQRYLNCLDLENFI
Ga0307997_103288091	3300031706	Marine	MDMEWSKLVELEHAWYQGVKLYTISRGAEHNSESYQRYRNCLDLENFI
Ga0307997_103326812	3300031706	Marine	MDVEWSTVVKLEHPWYRGVVLYTINRGAEHNSESYQRYRNCRDLE
Ga0315320_107320101	3300031851	Seawater	MDMEWFKLVEMEHPWYQGVTLYTISRRAEHNTKSYQRYLDGLDLAKFI
Ga0315320_107320102	3300031851	Seawater	PETIVKGRWEVSMDVERSKLVELDHPWYQGVTLYILSRGAEHNSESYQRYLDGLDLAKFI

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071646

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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