Basic Information | |
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Family ID | F071704 |
Family Type | Metagenome |
Number of Sequences | 122 |
Average Sequence Length | 43 residues |
Representative Sequence | MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISATTPVRQ |
Number of Associated Samples | 111 |
Number of Associated Scaffolds | 122 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 77.97 % |
% of genes near scaffold ends (potentially truncated) | 95.90 % |
% of genes from short scaffolds (< 2000 bps) | 90.98 % |
Associated GOLD sequencing projects | 107 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (62.295 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.934 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.508 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (51.639 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 40.85% β-sheet: 0.00% Coil/Unstructured: 59.15% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Peatland Freshwater Wetlands Freshwater Sediment Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Glacier Forefield Soil Grasslands Soil Surface Soil Peatlands Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Peat Soil Switchgrass Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
deeps_00063490 | 2199352024 | Soil | MDQRKVRNRILIFLVLAGVVAYVLVRLSGREPVAKIAAVSPVRDNLVSSIS |
JGIcombinedJ26739_1002672751 | 3300002245 | Forest Soil | MDQRKLRNRILLFLVVAAIVAYVLVRLSGREPVVKIAAVTPVRD |
JGIcombinedJ26739_1004407341 | 3300002245 | Forest Soil | MDKRFRNRTILLLIGAAVLAFVLVRLSGRQPVAKISAMIPGRQNIISSVTSNG |
JGI26337J50220_10368781 | 3300003370 | Bog Forest Soil | MDRRLRNRIVIFLVLAGVAAFVLVKLSGRQPVAKISAVAPIREDLASSI |
Ga0062385_103745531 | 3300004080 | Bog Forest Soil | MEKKLRNRVLLFLALAAIAAFVLVKISGRQPVAKIAATRPLRENIISSVSS |
Ga0062386_1005797031 | 3300004152 | Bog Forest Soil | MDKKLRNRTLLFLLLVGIVVFVLIHWSGRQPVAKISAVRPVRQNVVASITSN |
Ga0066388_1060629732 | 3300005332 | Tropical Forest Soil | MDRRLRNRILLFLLAAGILAYVLVLLSGRQPVTKLSATFPTREN |
Ga0066388_1077787622 | 3300005332 | Tropical Forest Soil | MERKLRNRILIFLALAAVVAFVLVKLSGRQPVAKIMAVKPVRENLVASVSSN |
Ga0070708_1009744521 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MDRRLRNRILLFLLAAGILAYVLVLLSGRQPVAKLSATYP |
Ga0066695_100878644 | 3300005553 | Soil | MDRRLRNRILLFLVLAAAAAYGLYRLSGRQPAAKIAA |
Ga0070717_108279162 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MDRRLRNRILLILLAAGILAYVLLLLSGRQPVAKLSA |
Ga0075028_1004326812 | 3300006050 | Watersheds | MDRKLRNRILIFLAIAGVVAYGLVRLSGRQPVAKISVIQPIRETLVS |
Ga0075029_1002870611 | 3300006052 | Watersheds | MDKKFRNRTLLLLLLAGILAFFLIRASGKQPVAKISAMQPVREDIVSSIS |
Ga0070715_102398922 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MERKLRNRILIFLAAAGIVAYLLVRLSGRQPVARIMAVKPVRENLVASVSTNG |
Ga0070765_1011031221 | 3300006176 | Soil | MDRRLRNRIVILLLLAGAAAPFLVWLSGRKPAAKI |
Ga0070765_1013269322 | 3300006176 | Soil | MDRKLRNRILIFLVLAGIVAFALIRFSGRQPVAKIFAV |
Ga0070765_1022459731 | 3300006176 | Soil | MDRRLRNRILIFLALAGASALVLIKVSGRQPLAKISAVTPV |
Ga0075434_1004161001 | 3300006871 | Populus Rhizosphere | VDRRLRNRILIFLLLAGIAAIVLISLSGRQPVAKISAVMPV |
Ga0075426_114614231 | 3300006903 | Populus Rhizosphere | MERKLRNRILIFLVAAGIVAFLLVRLSGRQPIAKIMAVKPV |
Ga0075435_1008238861 | 3300007076 | Populus Rhizosphere | MERKLRNRVLIFLLVAGIVAFVLVRISGRQPVAKISAMTPKRQN |
Ga0099792_103630641 | 3300009143 | Vadose Zone Soil | MDRRLRNRIVIFLVLAAIVAFVLVRLSGRQPVAKISAVTP |
Ga0116218_13892102 | 3300009522 | Peatlands Soil | MDRKLRNRTLLLLGLAAVVAFVLIRVSGHQPVAKISATSPVRQNITLLIS |
Ga0116221_12757303 | 3300009523 | Peatlands Soil | MDKKLRNRVLVFLLLAGIVAFLLVRVSGRQPVAKIS |
Ga0126380_103937902 | 3300010043 | Tropical Forest Soil | MDRRLRNRILVFLLAAGILAYVLVLMSGRQPVAKLSATYATRE |
Ga0126380_107906711 | 3300010043 | Tropical Forest Soil | MERKLRNRILIFLALAAVVAFVLVRLSGRQPVARIMVVKPVRENLVASV |
Ga0126373_128621511 | 3300010048 | Tropical Forest Soil | MDRRLRNRILLFLLAAGISAYVLVLLSGRQPVAKLSATVPTRENIVSSVS |
Ga0134080_102227931 | 3300010333 | Grasslands Soil | MERKLRNRILIFLAAAGIVAYLLVRLSGRQPVAKVMAVRP |
Ga0126376_108901121 | 3300010359 | Tropical Forest Soil | MDRKLRNRILLFLVLAAIAATALISLSGRQPVAKISAVLPVRENI |
Ga0126372_101593391 | 3300010360 | Tropical Forest Soil | MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISATTPVRQNIVSSIISN |
Ga0126372_120773561 | 3300010360 | Tropical Forest Soil | MERKLRNRILIFLALAAVVAFVLVKLSGRQPVAKIMAVKPVREN |
Ga0126378_129817462 | 3300010361 | Tropical Forest Soil | MDRKLRNRTLLLLVLAGIIAFVLVRISGRQPVAKIAATRPVRQ |
Ga0126378_133235551 | 3300010361 | Tropical Forest Soil | MDRRLRNRILIFLFAAGVLAYVLVLLSGRQPVAKLSATYPTREN |
Ga0126377_124396871 | 3300010362 | Tropical Forest Soil | MDRRLRNRILFYLLGAGVLAYVLFLLSGRQPVAKLSAV |
Ga0126379_106414643 | 3300010366 | Tropical Forest Soil | MDKKLRNRTLLFLLAAGIVAFVLIKISERQPVAKIAAVRPFRQ |
Ga0134121_129293051 | 3300010401 | Terrestrial Soil | MDRRLRNKIVLFLLAAALVAYGLVWLSGRQPVAKIAAVTPM |
Ga0137393_116183412 | 3300011271 | Vadose Zone Soil | MDRRLRNRIVIFLILAAVVAIVLVRLSGRQPVAKISAVTP |
Ga0137363_112741071 | 3300012202 | Vadose Zone Soil | MDRRFRNRILIFLLLATVAAFALVELSGRKPVAKISAVTPTREN |
Ga0137362_104548871 | 3300012205 | Vadose Zone Soil | MDRRLRNRIILFLALAAVAAVILVRLSGRQPVAKISAVTPV |
Ga0137380_107792003 | 3300012206 | Vadose Zone Soil | MDRRLRNRILLFLVLAAAAAYGLYRLSGRQPAAKIA |
Ga0137390_101086861 | 3300012363 | Vadose Zone Soil | MDRRLRNRIVILLVLAGIVAYALVRLTGRQPVAKISAVTPVREN |
Ga0137395_107304352 | 3300012917 | Vadose Zone Soil | MDRRLRNRILIFLALAAIVAFALVRLSGRQPVAKISAVTPIRENVISSISS |
Ga0137394_109207721 | 3300012922 | Vadose Zone Soil | MDRRLRNRILLILLAAGILAYMLLLLSGRQPVAKLSAVTPTRENIVS |
Ga0137419_105213511 | 3300012925 | Vadose Zone Soil | MDRRLRNRILLILLAAGILAYLLLLLSGRQPVAKLSAVKPT |
Ga0137407_110690402 | 3300012930 | Vadose Zone Soil | MIGFQEFMDKKLRNRTLLFLLLAGIVAFVLIKVSGRQPVAKIS |
Ga0153915_102955831 | 3300012931 | Freshwater Wetlands | MERKLRNRILLFLLLAGVIAYLLVRISGRQPVAKI |
Ga0153915_122382142 | 3300012931 | Freshwater Wetlands | MERKLRNRILLFLLLAGVIAYLLVRISGRQPVAKIAAVLPARENLVASISSN |
Ga0137410_103071361 | 3300012944 | Vadose Zone Soil | MDRRLRNRVLIFLALAAIVAFALVRLSGRQPVAKISAVTPIRENVISSI |
Ga0137405_12048511 | 3300015053 | Vadose Zone Soil | MERKLRNRILIFLAAAGIVIFLAAAGIVAYLLVRLSGRQP |
Ga0167661_10466551 | 3300015167 | Glacier Forefield Soil | MDQRKVRNRILIFLALAAIVAYALVRLSGREPVVKIAAVMPVL |
Ga0167638_10315422 | 3300015197 | Glacier Forefield Soil | MDQRKLRNRILLFLLVAGIVAYALVRLSGREPVVKIAAVTPV |
Ga0137403_101554674 | 3300015264 | Vadose Zone Soil | LIFLLLAGIAAIVLISLSGRQPVAKISAVMPVRENIVASL |
Ga0182036_107084902 | 3300016270 | Soil | MDRRLRNRILIFLFAAGVLAYLLVLLSGRQPVAKLSA |
Ga0182033_111771161 | 3300016319 | Soil | MDRKLRNRTLLFLALAAVVAFVLVRLSGRQPVAKISATTPVRQNIVSSVS |
Ga0182040_107914781 | 3300016387 | Soil | MERKLRNRVLIFLLVAGIVAFVLVRMSGRQPVAKISAMTPKRQNIVSSISSN |
Ga0182037_116642982 | 3300016404 | Soil | MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKISATTPVRQNIVSSV |
Ga0182039_100402374 | 3300016422 | Soil | MDRKLRNRALLFLALAGIVAFALVRLSGRQPVAKISAT |
Ga0182039_118539141 | 3300016422 | Soil | MDRRLRNRILVFLLAAGILAYVLILLSGRQPVAKLSATY |
Ga0187802_104550312 | 3300017822 | Freshwater Sediment | MDRKLRNRTLLLLGLAAVVAFVLVRVSGRQPIAKISAARPVRQNIVSSTSSN |
Ga0187825_104201922 | 3300017930 | Freshwater Sediment | MDRRLTRRTLLLLALAAVVAFVLIRVSGRQPVAKISATSPV |
Ga0187801_101719643 | 3300017933 | Freshwater Sediment | MDERLQLIMDRKLRNRTLLLLGLAAVVAFVLIRVSGRQPVAKISATSPVRQNIMSSIG |
Ga0187803_101564691 | 3300017934 | Freshwater Sediment | MDRRLTRRTLLLLALAAVVAFVLIRVSGRQPVAKISATSPVRQ |
Ga0187785_107329922 | 3300017947 | Tropical Peatland | MDKTLRNRTLLFLLLAGIVAFVLVRVSGRQPVAKISAVRPVRQNIVSSI |
Ga0187817_101969581 | 3300017955 | Freshwater Sediment | MDKTLRNRLLVFLLVAGIVAYYLVWVSGRQPVAKISATTPV |
Ga0187779_109712992 | 3300017959 | Tropical Peatland | MAAQLQDFMERKLRNRVLIFLLVAGIVAFVLVRISGRQPVAKISAMTPMRQNIV |
Ga0187780_107340691 | 3300017973 | Tropical Peatland | MDKKLRNRLVVFLLLAGIVAFVLVRISGRQPVAKVSATTP |
Ga0187777_105275452 | 3300017974 | Tropical Peatland | MDKKLRNRTLFLLVLAGIVAFVLVRISGRQPVAKIAATRPVRQNIAS |
Ga0187784_107356561 | 3300018062 | Tropical Peatland | MDKKLRNRTISLLVLAALLAFVLIHVSGRQPVAKISASRP |
Ga0187772_101413591 | 3300018085 | Tropical Peatland | MDRKLRNWTLLLLGLAAVVAFVLVRVSGRQPVAKI |
Ga0187771_100529544 | 3300018088 | Tropical Peatland | MDKRWRNRTLLLLGLAALAVIVLMRVSGRQPVAKISVTAPVRQDIVSSIIS |
Ga0179594_101333902 | 3300020170 | Vadose Zone Soil | MDQRKVRNRILICLVLAGVVAYVLVRLSGREPVAKIAAVSPVRDNV |
Ga0210403_110595271 | 3300020580 | Soil | MDRRLRNRILIFLVLAAVVAFALVRLSGRQPVAKISAVSPIRENVISSISS |
Ga0210399_110793561 | 3300020581 | Soil | MDRKLRNRILIFLVLAGIVAFTLIRFSGRQPVAKILAVTPIRANVVSSISSN |
Ga0210395_111361862 | 3300020582 | Soil | MLRNRVLILLGLAAIIAFVLVKVSGRQPVAKISATTPV |
Ga0210406_111340481 | 3300021168 | Soil | MDRRLRNRIVIFLVLAAIVAFVLVRLTGRQPVAKIAAVTP |
Ga0210408_102579203 | 3300021178 | Soil | MDKKLRNRTLLFLLLAGIVAFALIKYSGHQPVAKISA |
Ga0210408_110443691 | 3300021178 | Soil | MDRRLRNRIVIFLVLAAVVAFALVRLSGRQPVAKISAVTPVRENLISS |
Ga0210383_105160432 | 3300021407 | Soil | MDKKLRNRTLLFLLLVVIVVIVFIKVSGRQPAAKISAVKPFRENI |
Ga0210398_100240711 | 3300021477 | Soil | MDQRKLRNRILLFLVVAGIVAYVLVRLSGREPVAKIAAVTPVRDNLVSS |
Ga0210402_105197832 | 3300021478 | Soil | MLRNRVLILLGLAAIIAFVLVRVSGRQPVAKISATT |
Ga0224564_11161291 | 3300024271 | Soil | MDRRLRNRIVILLLLAGAAAPLLVWLSGRKPAAKISAMTP |
Ga0208321_10090881 | 3300025409 | Peatland | MDKKLRNRVFAFLLLAGIVAFLLVRISGRPPVAKISATTPVRRNIVASIS |
Ga0208036_10154041 | 3300025419 | Peatland | MDKKLRNRVFAFLLLAGIVAFLLVRISGRPPVAKIS |
Ga0207693_109915712 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MDRRLRNRILLILLAAGILAYVLLLLSGRQPVAKL |
Ga0207641_105940661 | 3300026088 | Switchgrass Rhizosphere | MDRRLRNRILLFLLAAGILAYVLVLLSGRKPVAKLSATYPTRENIV |
Ga0209470_13806051 | 3300026324 | Soil | MDRRLRNRLLFFLLAAAILAYLLFLLSGRQPVTKLSAVVPSHE |
Ga0179593_11459391 | 3300026555 | Vadose Zone Soil | MDKKLRNRTLLLLLLAGIVAFVLIKVSGRQPVAKISAVKPFRHNI |
Ga0179587_105038021 | 3300026557 | Vadose Zone Soil | MDRRLRNRILIFLALAAIAAFILVRLSGRQPVAKISAVLPIREN |
Ga0207781_10159431 | 3300026890 | Tropical Forest Soil | MDRKLRNRTLLFLALAGIVAFVLVRLSGRQPVAKISATTPVRQNIVSS |
Ga0207817_10061292 | 3300026979 | Tropical Forest Soil | MDRKLRNRTLLFLALAGIVAFVLVRLSGRQPVAKISATTPVRQNI |
Ga0207815_10059861 | 3300027014 | Tropical Forest Soil | MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISAT |
Ga0207819_10410751 | 3300027024 | Tropical Forest Soil | MDRKLRNRTILFLLLAGIVAFILVRASGRQPVAKISAMRPARENIVSSV |
Ga0209529_10263681 | 3300027334 | Forest Soil | MDRRLRNRILIFLLAATVLALILIKVSGRQPVAKISAVTPIRQNIIASIS |
Ga0209004_10133491 | 3300027376 | Forest Soil | MDKKLRNRTLLFLLLAGIVAFVLIKVSGRQPAAKISA |
Ga0209656_101676361 | 3300027812 | Bog Forest Soil | MEKKLRNRVLIFLLVAGIVAYVLVRVSGRQPVAKIT |
Ga0209166_103352013 | 3300027857 | Surface Soil | MERKLRNRILIFLVAAGIVAYLLVRLSGRQPVARIMAVKPVRENLVASVST |
Ga0209583_101587961 | 3300027910 | Watersheds | MDKKLRNRTLLFLLLAGFVAFVLIKVSGRQPVAKISAVKPFRQN |
Ga0265352_10124002 | 3300028021 | Soil | MERRLRNRIVISLLLAVVAAIFLVWLSGRKPAAKISAV |
Ga0268264_104285931 | 3300028381 | Switchgrass Rhizosphere | MDRRLRNRILVFLLAAGILAYVLVLLSGRQPVAKL |
Ga0308309_104099122 | 3300028906 | Soil | MDRRLRNRIVIFLLLAGVLALVLIKVSGRQPVAKISAVTPVRENI |
Ga0311368_103285612 | 3300029882 | Palsa | MERVLRNRILIFLVLAAVGAVVLIRLSGRQPVAKITAVRPVRQNIVAFI |
Ga0302178_104815831 | 3300030013 | Palsa | MERVLRNRILIFLVLAAVGAVVLIRLSGRQPVAKITAVRPVR |
Ga0302309_102890742 | 3300030687 | Palsa | MDHRLRNRILIFLALAAVAAYALVRLSGRQPVAKISAVTPIREN |
Ga0170818_1092418153 | 3300031474 | Forest Soil | MDRRLRNRILLILLAAGILAYMLLLLSGRQPVAKLSAVKP |
Ga0318573_103817141 | 3300031564 | Soil | MDRKLRNRTLVLLVVAGVIAFILVKLSGKQPVAKIAATVPVR |
Ga0318496_105052042 | 3300031713 | Soil | MDRKLRNRTLLFLALAAVVAFVLVRLSGRQPVAKISATTPVRQNIVSSVSS |
Ga0307476_106631681 | 3300031715 | Hardwood Forest Soil | MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISATTPVRQ |
Ga0307474_116314791 | 3300031718 | Hardwood Forest Soil | MDRRLRNRILIFLVLAGATALVLIRVSGRQPVAKISAVTPVRENIIASI |
Ga0307469_101390781 | 3300031720 | Hardwood Forest Soil | MDRRLRNRIVIFLVLAGIVAFALVRLSGRQPVAKISAVSPMRE |
Ga0307478_105546681 | 3300031823 | Hardwood Forest Soil | MDRRLRNRIVIFLALAAVAVFVLVRLTGRQPVAKIAAV |
Ga0310917_108766601 | 3300031833 | Soil | MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKI |
Ga0306925_114775601 | 3300031890 | Soil | MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKIS |
Ga0310910_101178053 | 3300031946 | Soil | MDRKLRNRTLVLLALAAVTAFILIRVSGRQPVAKIAATR |
Ga0310910_107159601 | 3300031946 | Soil | MDKKLRNRTLLFLLLAGIAVFAFIRLSNRQPVAKIAAVLPVRQNIV |
Ga0318530_102321101 | 3300031959 | Soil | MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKISATTPVRQNIVSSVSSN |
Ga0307479_103510311 | 3300031962 | Hardwood Forest Soil | MDRRLRNRIVIFLVLAAIVAFVLVRLTGRQPVAKIAA |
Ga0318549_103822541 | 3300032041 | Soil | MDRRLRNRILIFLFASGVLAYVLVLLSGRQPVAKL |
Ga0307471_1020679642 | 3300032180 | Hardwood Forest Soil | MDRRLRNRIVIFLVLAAVAVIVLVRLTGRQPVAKI |
Ga0306920_1012367762 | 3300032261 | Soil | MDRRLRNRILIFLFAAGVLAYLLVLLSGRQPVAKLSATYPPAKISSPP |
Ga0335079_100649885 | 3300032783 | Soil | MDRKLRNRIVFFLLGAGVVAFVLVKLSGRQPVAKISAVTPMREN |
Ga0335081_114200662 | 3300032892 | Soil | MDRKLRNRALILLGFAAIIAFALVRLSGRQPVAKIAATR |
Ga0310914_118954871 | 3300033289 | Soil | MDRKLRNRTLVLLALAAVTAFILIRVSGRQPVAKIA |
Ga0326728_102700033 | 3300033402 | Peat Soil | MDKKLRNRVLVFLLLAGIVAYLLVRISGRQPVAKISA |
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